Warning: Permanently added '3.238.82.129' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10717051-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.8 PID: 10386 Logging PID: 10388 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 10717051, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7d77e50e6e734352308a976e8732b6c8fea85d59', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mtasaka/ruby-40-updates-rebuild-01/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.2.0-2', 'project_dirname': 'ruby-40-updates-rebuild-01', 'project_name': 'ruby-40-updates-rebuild-01', 'project_owner': 'mtasaka', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mtasaka/ruby-40-updates-rebuild-01/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/mtasaka/ruby-40-updates-01/fedora-rawhide-x86_64/', 'id': 'copr_mtasaka_ruby_40_updates_01', 'name': 'Additional repo copr_mtasaka_ruby_40_updates_01'}], 'sandbox': 'mtasaka/ruby-40-updates-rebuild-01--mtasaka', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'mtasaka', 'tags': [], 'task_id': '10717051-fedora-rawhide-x86_64', 'timeout': 172800, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mtasaka/ruby-40-updates-rebuild-01/openbabel /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mtasaka/ruby-40-updates-rebuild-01/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel'... Running: git checkout 7d77e50e6e734352308a976e8732b6c8fea85d59 -- cmd: ['git', 'checkout', '7d77e50e6e734352308a976e8732b6c8fea85d59', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel rc: 0 stdout: stderr: Note: switching to '7d77e50e6e734352308a976e8732b6c8fea85d59'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7d77e50 automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-2-0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o openbabel-openbabel-3-2-0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mtasaka/ruby-40-updates-rebuild-01/openbabel/openbabel-openbabel-3-2-0.tar.gz/md5/7ff7d2b8de07fa0507a7826f62d7045a/openbabel-openbabel-3-2-0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 36.06M 100 36.06M 0 0 424.0M 0 0 INFO: Reading stdout from command: md5sum openbabel-openbabel-3-2-0.tar.gz Running (timeout=172800): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1784028058.078625 -r /var/lib/copr-rpmbuild/results/configs/child.cfg tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: mock.py version 6.7 starting (python version = 3.14.5, NVR = mock-6.7-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1784028058.078625 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel/openbabel.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1784028058.078625/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-2672fd15-c5e6-4b60-a4f2-9a98b917074b INFO: Checking that 0455222b9eb078a2d057efbdf2b03d433d7329b0ba1cff85c15fc294ce15a773 image matches host's architecture INFO: Copy content of container 0455222b9eb078a2d057efbdf2b03d433d7329b0ba1cff85c15fc294ce15a773 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1784028058.078625/root INFO: mounting 0455222b9eb078a2d057efbdf2b03d433d7329b0ba1cff85c15fc294ce15a773 with podman image mount INFO: image 0455222b9eb078a2d057efbdf2b03d433d7329b0ba1cff85c15fc294ce15a773 as /var/lib/containers/storage/overlay/ed9438e0a4ff2bdb20d9aa103a4f92015b8041f6e943d27c67742c1df0014524/merged INFO: umounting image 0455222b9eb078a2d057efbdf2b03d433d7329b0ba1cff85c15fc294ce15a773 (/var/lib/containers/storage/overlay/ed9438e0a4ff2bdb20d9aa103a4f92015b8041f6e943d27c67742c1df0014524/merged) with podman image umount INFO: Removing image mock-bootstrap-2672fd15-c5e6-4b60-a4f2-9a98b917074b INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.91-3.fc45.x86_64 rpm-sequoia-1.10.2-4.fc45.x86_64 dnf5-5.4.2.1-6.fc45.x86_64 dnf5-plugins-5.4.2.1-6.fc45.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo copr_mtasaka_ruby_40_u 100% | 21.7 KiB/s | 22.1 KiB | 00m01s fedora 100% | 16.4 MiB/s | 21.7 MiB | 00m01s Copr repository 100% | 411.3 KiB/s | 524.8 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 0:5.3.15-1.fc45 fedora 8.5 MiB bzip2 x86_64 0:1.0.8-23.fc44 fedora 95.0 KiB coreutils x86_64 0:9.11-4.fc45 fedora 5.9 MiB cpio x86_64 0:2.15-9.fc44 fedora 1.1 MiB diffutils x86_64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:45-0.8 fedora 4.2 KiB findutils x86_64 1:4.11.0-1.fc45 fedora 1.9 MiB gawk x86_64 0:5.4.0-3.fc45 fedora 2.2 MiB glibc-minimal-langpack x86_64 0:2.43.9000-22.fc45 fedora 0.0 B grep x86_64 0:3.12-3.fc44 fedora 1.0 MiB gzip x86_64 0:1.14-3.fc45 fedora 401.6 KiB info x86_64 0:7.3-2.fc45 fedora 372.4 KiB patch x86_64 0:2.8-4.fc44 fedora 226.6 KiB redhat-rpm-config noarch 0:344-5.fc45 fedora 184.2 KiB rpm-build x86_64 0:6.0.91-3.fc45 fedora 312.2 KiB sed x86_64 0:4.10-1.fc45 fedora 939.4 KiB shadow-utils x86_64 2:4.19.3-3.fc45 fedora 4.0 MiB tar x86_64 2:1.35-8.fc44 fedora 3.0 MiB unzip x86_64 0:6.0-69.fc44 fedora 445.8 KiB util-linux x86_64 0:2.42.2-1.fc45 fedora 3.7 MiB which x86_64 0:2.25-1.fc45 fedora 83.6 KiB xz x86_64 1:5.8.3-1.fc45 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc45 fedora 3.5 KiB add-determinism x86_64 0:0.7.3-2.fc45 fedora 2.2 MiB alternatives x86_64 0:1.33-5.fc44 fedora 62.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs x86_64 0:4.1.4-2.fc45 fedora 390.5 KiB binutils x86_64 0:2.46.50-12.fc45 fedora 28.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc45 fedora 1.2 KiB bzip2-libs x86_64 0:1.0.8-23.fc44 fedora 80.5 KiB ca-certificates noarch 0:2025.2.80_v9.0.304-8.fc45 fedora 2.6 MiB cmake-srpm-macros noarch 0:4.3.0-4.fc45 fedora 524.0 B coreutils-common x86_64 0:9.11-4.fc45 fedora 10.9 MiB crypto-policies noarch 0:20260713-1.gitc42da77.fc45 fedora 134.3 KiB curl x86_64 0:8.21.0-1.fc45 fedora 487.9 KiB cyrus-sasl-lib x86_64 0:2.1.28-36.fc45 fedora 2.3 MiB debugedit x86_64 0:5.3-2.fc45 fedora 220.8 KiB dwz x86_64 0:0.17-1.fc45 fedora 291.1 KiB ed x86_64 0:1.22.5-2.fc45 fedora 149.7 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils x86_64 0:0.195-2.fc45 fedora 3.0 MiB elfutils-debuginfod-client x86_64 0:0.195-2.fc45 fedora 79.8 KiB elfutils-libelf x86_64 0:0.195-2.fc45 fedora 1.2 MiB elfutils-libs x86_64 0:0.195-2.fc45 fedora 715.4 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc45 fedora 1.9 KiB fedora-gpg-keys noarch 0:45-0.1 fedora 133.4 KiB fedora-release noarch 0:45-0.8 fedora 0.0 B fedora-release-identity-basic noarch 0:45-0.8 fedora 664.0 B fedora-repos noarch 0:45-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 0:45-0.1 fedora 2.2 KiB file x86_64 0:5.47-3.fc45 fedora 101.2 KiB file-libs x86_64 0:5.47-3.fc45 fedora 12.2 MiB filesystem x86_64 0:3.18-58.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-58.fc45 fedora 38.2 KiB fips-provider x86_64 0:1.5.2-1.fc45 fedora 4.8 MiB fonts-srpm-macros noarch 1:5.0.0-3.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal x86_64 0:17.2-1.fc45 fedora 14.2 MiB gdbm-libs x86_64 1:1.23-11.fc44 fedora 129.6 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc x86_64 0:2.43.9000-22.fc45 fedora 7.0 MiB glibc-common x86_64 0:2.43.9000-22.fc45 fedora 1.0 MiB glibc-gconv-extra x86_64 0:2.43.9000-22.fc45 fedora 7.7 MiB gmp x86_64 1:6.3.0-5.fc44 fedora 815.2 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-3.fc45 fedora 655.0 KiB gnupg2 x86_64 0:2.4.9-16.fc45 fedora 6.5 MiB gnupg2-dirmngr x86_64 0:2.4.9-16.fc45 fedora 634.0 KiB gnupg2-gpg-agent x86_64 0:2.4.9-16.fc45 fedora 686.6 KiB gnupg2-gpgconf x86_64 0:2.4.9-16.fc45 fedora 249.7 KiB gnupg2-keyboxd x86_64 0:2.4.9-16.fc45 fedora 201.2 KiB gnupg2-verify x86_64 0:2.4.9-16.fc45 fedora 360.3 KiB gnutls x86_64 0:3.8.13-1.fc45 fedora 3.8 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs x86_64 0:1.6.2-11.fc45 fedora 56.6 KiB jansson x86_64 0:2.14-4.fc44 fedora 88.9 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c x86_64 0:0.18-8.fc44 fedora 82.6 KiB kernel-srpm-macros noarch 0:1.0-29.fc45 fedora 1.9 KiB keyutils-libs x86_64 0:1.6.3-7.fc44 fedora 54.2 KiB krb5-libs x86_64 0:1.22.2-8.fc45 fedora 2.4 MiB libacl x86_64 0:2.4.0-1.fc45 fedora 43.9 KiB libarchive x86_64 0:3.8.8-2.fc45 fedora 1.0 MiB libassuan x86_64 0:2.5.7-5.fc44 fedora 163.8 KiB libattr x86_64 0:2.6.0-1.fc45 fedora 24.3 KiB libblkid x86_64 0:2.42.2-1.fc45 fedora 282.2 KiB libbrotli x86_64 0:1.2.0-4.fc45 fedora 865.0 KiB libcap x86_64 0:2.78-1.fc45 fedora 212.1 KiB libcap-ng x86_64 0:0.9.3-2.fc45 fedora 68.8 KiB libcbor x86_64 0:0.14.0-2.fc45 fedora 83.5 KiB libcom_err x86_64 0:1.47.4-1.fc45 fedora 63.0 KiB libcurl x86_64 0:8.21.0-1.fc45 fedora 1.1 MiB libeconf x86_64 0:0.7.9-3.fc44 fedora 64.8 KiB libevent x86_64 0:2.1.12-18.fc45 fedora 978.8 KiB libfdisk x86_64 0:2.42.2-1.fc45 fedora 392.2 KiB libffi x86_64 0:3.5.2-2.fc44 fedora 87.7 KiB libfido2 x86_64 0:1.17.0-3.fc45 fedora 256.5 KiB libfsverity x86_64 0:1.7-3.fc45 fedora 24.4 KiB libgcc x86_64 0:16.1.1-4.fc45 fedora 270.7 KiB libgcrypt x86_64 0:1.12.2-1.fc45 fedora 1.7 MiB libgomp x86_64 0:16.1.1-4.fc45 fedora 577.4 KiB libgpg-error x86_64 0:1.61-1.fc45 fedora 949.8 KiB libidn2 x86_64 0:2.3.8-3.fc44 fedora 556.4 KiB libksba x86_64 0:1.8.0-1.fc45 fedora 431.1 KiB liblastlog2 x86_64 0:2.42.2-1.fc45 fedora 37.6 KiB libmount x86_64 0:2.42.2-1.fc45 fedora 404.8 KiB libnghttp2 x86_64 0:1.69.0-3.fc45 fedora 166.2 KiB libnghttp3 x86_64 0:1.17.0-1.fc45 fedora 163.2 KiB libpkgconf x86_64 0:2.5.1-1.fc45 fedora 90.1 KiB libpsl x86_64 0:0.23.0-1.fc45 fedora 80.4 KiB libselinux x86_64 0:3.11-1.fc45 copr_base 205.2 KiB libselinux-utils x86_64 0:3.11-1.fc45 copr_base 306.0 KiB libsemanage x86_64 0:3.11-1.fc45 fedora 316.4 KiB libsepol x86_64 0:3.11-1.fc45 fedora 866.2 KiB libsmartcols x86_64 0:2.42.2-1.fc45 fedora 188.5 KiB libssh x86_64 0:0.12.0-3.fc45 fedora 719.2 KiB libssh-config noarch 0:0.12.0-3.fc45 fedora 277.0 B libstdc++ x86_64 0:16.1.1-4.fc45 fedora 3.1 MiB libtasn1 x86_64 0:4.21.0-1.fc45 fedora 180.6 KiB libtool-ltdl x86_64 0:2.5.4-10.fc44 fedora 70.0 KiB libunistring x86_64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 x86_64 0:1.0.30-1.fc45 fedora 180.1 KiB libuuid x86_64 0:2.42.2-1.fc45 fedora 37.3 KiB libverto x86_64 0:0.3.2-12.fc44 fedora 25.3 KiB libxcrypt x86_64 0:4.5.2-3.fc44 fedora 293.2 KiB libxml2 x86_64 0:2.13.9-2.fc45 fedora 1.8 MiB libzstd x86_64 0:1.5.7-5.fc44 fedora 956.1 KiB linkdupes x86_64 0:0.7.3-2.fc45 fedora 780.9 KiB lua-libs x86_64 0:5.5.0-1.fc45 fedora 297.9 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs x86_64 0:1.10.0-4.fc44 fedora 157.3 KiB mpfr x86_64 0:4.2.2-3.fc44 fedora 849.1 KiB ncurses-base noarch 0:6.6-2.fc45 fedora 329.7 KiB ncurses-libs x86_64 0:6.6-2.fc45 fedora 968.8 KiB nettle x86_64 0:3.10.1-3.fc44 fedora 794.3 KiB ngtcp2 x86_64 0:1.22.1-2.fc45 fedora 334.3 KiB ngtcp2-crypto-ossl x86_64 0:1.22.1-2.fc45 fedora 51.6 KiB npth x86_64 0:1.8-4.fc44 fedora 49.5 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap x86_64 0:2.6.13-2.fc45 fedora 677.9 KiB openssl-libs x86_64 1:4.0.1-3.fc45 fedora 6.7 MiB p11-kit x86_64 0:0.26.4-1.fc45 fedora 2.6 MiB p11-kit-trust x86_64 0:0.26.4-1.fc45 fedora 478.4 KiB package-notes-srpm-macros noarch 0:0.20-1.fc45 fedora 1.6 KiB pam-libs x86_64 0:1.7.2-3.fc45 fedora 134.5 KiB pcre2 x86_64 0:10.47-1.fc44.1 fedora 718.6 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf x86_64 0:2.5.1-1.fc45 fedora 92.7 KiB pkgconf-m4 noarch 0:2.5.1-1.fc45 fedora 14.3 KiB pkgconf-pkg-config x86_64 0:2.5.1-1.fc45 fedora 989.0 B policycoreutils x86_64 0:3.11-1.fc45 fedora 892.9 KiB popt x86_64 0:1.19-10.fc44 fedora 132.6 KiB publicsuffix-list-dafsa noarch 0:20260624-1.fc45 fedora 71.3 KiB pyproject-srpm-macros noarch 0:1.22.2-1.fc45 fedora 3.2 KiB python-srpm-macros noarch 0:3.15-1.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.1-1.fc45 fedora 472.0 B readline x86_64 0:8.3-4.fc44 fedora 519.5 KiB redhat-systemd-presets noarch 0:102-2.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-2.fc45 fedora 16.9 KiB rpm x86_64 0:6.0.91-3.fc45 fedora 3.1 MiB rpm-build-libs x86_64 0:6.0.91-3.fc45 fedora 288.4 KiB rpm-libs x86_64 0:6.0.91-3.fc45 fedora 1.1 MiB rpm-plugin-selinux x86_64 0:6.0.91-3.fc45 fedora 11.9 KiB rpm-sequoia x86_64 0:1.10.2-4.fc45 fedora 2.4 MiB rpm-sign-libs x86_64 0:6.0.91-3.fc45 fedora 39.7 KiB rust-srpm-macros noarch 0:28.4-3.fc44 fedora 5.5 KiB selinux-policy noarch 0:45.8-1.fc45 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.8-1.fc45 fedora 18.9 MiB setup noarch 0:2.15.1-1.fc45 fedora 725.6 KiB sqlite-libs x86_64 0:3.53.3-1.fc45 fedora 1.6 MiB systemd-libs x86_64 0:261.1-2.fc45 fedora 2.7 MiB systemd-standalone-sysusers x86_64 0:261.1-2.fc45 fedora 940.4 KiB tpm2-tss x86_64 0:4.1.3-10.fc45 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.6-1.fc45 fedora 8.6 KiB util-linux-core x86_64 0:2.42.2-1.fc45 fedora 1.5 MiB xxhash-libs x86_64 0:0.8.3-4.fc44 fedora 94.0 KiB xz-libs x86_64 1:5.8.3-1.fc45 fedora 217.7 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip x86_64 0:3.0-45.fc44 fedora 698.0 KiB zlib-ng-compat x86_64 0:2.3.3-5.fc45 fedora 165.6 KiB zstd x86_64 0:1.5.7-5.fc44 fedora 502.4 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 188 packages Total size of inbound packages is 72 MiB. Need to download 72 MiB. After this operation, 230 MiB extra will be used (install 230 MiB, remove 0 B). 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rpm-build-0:6.0.91-3.fc45.x86 100% | 77.7 MiB/s | 159.0 KiB | 00m00s [ 15/188] sed-0:4.10-1.fc45.x86_64 100% | 116.9 MiB/s | 359.1 KiB | 00m00s [ 16/188] shadow-utils-2:4.19.3-3.fc45. 100% | 202.6 MiB/s | 1.4 MiB | 00m00s [ 17/188] tar-2:1.35-8.fc44.x86_64 100% | 121.1 MiB/s | 868.2 KiB | 00m00s [ 18/188] unzip-0:6.0-69.fc44.x86_64 100% | 27.8 MiB/s | 199.6 KiB | 00m00s [ 19/188] which-0:2.25-1.fc45.x86_64 100% | 20.5 MiB/s | 42.0 KiB | 00m00s [ 20/188] xz-1:5.8.3-1.fc45.x86_64 100% | 213.3 MiB/s | 655.2 KiB | 00m00s [ 21/188] gawk-0:5.4.0-3.fc45.x86_64 100% | 233.3 MiB/s | 1.2 MiB | 00m00s [ 22/188] util-linux-0:2.42.2-1.fc45.x8 100% | 157.9 MiB/s | 1.3 MiB | 00m00s [ 23/188] filesystem-0:3.18-58.fc45.x86 100% | 181.6 MiB/s | 1.8 MiB | 00m00s [ 24/188] glibc-0:2.43.9000-22.fc45.x86 100% | 221.2 MiB/s | 2.4 MiB | 00m00s [ 25/188] ncurses-libs-0:6.6-2.fc45.x86 100% | 37.2 MiB/s | 343.2 KiB | 00m00s [ 26/188] bzip2-libs-0:1.0.8-23.fc44.x8 100% | 8.6 MiB/s | 43.8 KiB | 00m00s [ 27/188] coreutils-common-0:9.11-4.fc4 100% | 361.1 MiB/s | 2.2 MiB | 00m00s [ 28/188] gmp-1:6.3.0-5.fc44.x86_64 100% | 52.5 MiB/s | 322.5 KiB | 00m00s [ 29/188] libacl-0:2.4.0-1.fc45.x86_64 100% | 4.5 MiB/s | 27.4 KiB | 00m00s [ 30/188] libattr-0:2.6.0-1.fc45.x86_64 100% | 17.5 MiB/s | 17.9 KiB | 00m00s [ 31/188] libcap-0:2.78-1.fc45.x86_64 100% | 43.7 MiB/s | 89.4 KiB | 00m00s [ 32/188] openssl-libs-1:4.0.1-3.fc45.x 100% | 333.7 MiB/s | 2.3 MiB | 00m00s [ 33/188] fedora-repos-0:45-0.1.noarch 100% | 1.5 MiB/s | 9.2 KiB | 00m00s [ 34/188] systemd-libs-0:261.1-2.fc45.x 100% | 115.2 MiB/s | 943.5 KiB | 00m00s [ 35/188] redhat-systemd-presets-0:102- 100% | 4.1 MiB/s | 8.4 KiB | 00m00s [ 36/188] glibc-common-0:2.43.9000-22.f 100% | 197.3 MiB/s | 404.1 KiB | 00m00s [ 37/188] pcre2-0:10.47-1.fc44.1.x86_64 100% | 135.6 MiB/s | 277.7 KiB | 00m00s [ 38/188] ed-0:1.22.5-2.fc45.x86_64 100% | 41.7 MiB/s | 85.4 KiB | 00m00s [ 39/188] R-srpm-macros-0:1.3.7-2.fc45. 100% | 10.8 MiB/s | 11.0 KiB | 00m00s [ 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00m00s [ 79/188] readline-0:8.3-4.fc44.x86_64 100% | 56.1 MiB/s | 229.8 KiB | 00m00s [ 80/188] rpm-build-libs-0:6.0.91-3.fc4 100% | 66.2 MiB/s | 135.7 KiB | 00m00s [ 81/188] rpm-libs-0:6.0.91-3.fc45.x86_ 100% | 155.5 MiB/s | 477.7 KiB | 00m00s [ 82/188] zstd-0:1.5.7-5.fc44.x86_64 100% | 47.0 MiB/s | 192.5 KiB | 00m00s [ 83/188] audit-libs-0:4.1.4-2.fc45.x86 100% | 46.0 MiB/s | 141.3 KiB | 00m00s [ 84/188] libeconf-0:0.7.9-3.fc44.x86_6 100% | 17.7 MiB/s | 36.2 KiB | 00m00s [ 85/188] libsemanage-0:3.11-1.fc45.x86 100% | 62.1 MiB/s | 127.2 KiB | 00m00s [ 86/188] libxcrypt-0:4.5.2-3.fc44.x86_ 100% | 128.1 MiB/s | 131.2 KiB | 00m00s [ 87/188] pam-libs-0:1.7.2-3.fc45.x86_6 100% | 28.5 MiB/s | 58.4 KiB | 00m00s [ 88/188] setup-0:2.15.1-1.fc45.noarch 100% | 76.9 MiB/s | 157.5 KiB | 00m00s [ 89/188] xz-libs-1:5.8.3-1.fc45.x86_64 100% | 56.8 MiB/s | 116.4 KiB | 00m00s [ 90/188] mpfr-0:4.2.2-3.fc44.x86_64 100% | 174.7 MiB/s | 357.8 KiB | 00m00s [ 91/188] libcap-ng-0:0.9.3-2.fc45.x86_ 100% | 11.2 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add-determinism-0:0.7.3-2.fc4 100% | 278.2 MiB/s | 854.6 KiB | 00m00s [105/188] linkdupes-0:0.7.3-2.fc45.x86_ 100% | 84.2 MiB/s | 344.7 KiB | 00m00s [106/188] file-libs-0:5.47-3.fc45.x86_6 100% | 170.3 MiB/s | 872.0 KiB | 00m00s [107/188] curl-0:8.21.0-1.fc45.x86_64 100% | 59.7 MiB/s | 244.5 KiB | 00m00s [108/188] elfutils-libs-0:0.195-2.fc45. 100% | 92.0 MiB/s | 282.7 KiB | 00m00s [109/188] elfutils-debuginfod-client-0: 100% | 45.5 MiB/s | 46.6 KiB | 00m00s [110/188] libzstd-0:1.5.7-5.fc44.x86_64 100% | 118.5 MiB/s | 364.2 KiB | 00m00s [111/188] libxml2-0:2.13.9-2.fc45.x86_6 100% | 139.6 MiB/s | 714.8 KiB | 00m00s [112/188] lz4-libs-0:1.10.0-4.fc44.x86_ 100% | 19.0 MiB/s | 77.7 KiB | 00m00s [113/188] libgomp-0:16.1.1-4.fc45.x86_6 100% | 128.3 MiB/s | 394.2 KiB | 00m00s [114/188] lua-libs-0:5.5.0-1.fc45.x86_6 100% | 70.1 MiB/s | 143.6 KiB | 00m00s [115/188] rpm-sign-libs-0:6.0.91-3.fc45 100% | 13.2 MiB/s | 27.0 KiB | 00m00s [116/188] rpm-sequoia-0:1.10.2-4.fc45.x 100% | 305.2 MiB/s | 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p11-kit-0:0.26.4-1.fc45.x86_6 100% | 136.7 MiB/s | 559.8 KiB | 00m00s [143/188] cyrus-sasl-lib-0:2.1.28-36.fc 100% | 159.8 MiB/s | 818.1 KiB | 00m00s [144/188] libevent-0:2.1.12-18.fc45.x86 100% | 56.0 MiB/s | 286.6 KiB | 00m00s [145/188] libtool-ltdl-0:2.5.4-10.fc44. 100% | 9.0 MiB/s | 37.0 KiB | 00m00s [146/188] libffi-0:3.5.2-2.fc44.x86_64 100% | 13.8 MiB/s | 42.4 KiB | 00m00s [147/188] gdbm-libs-1:1.23-11.fc44.x86_ 100% | 28.7 MiB/s | 58.8 KiB | 00m00s [148/188] libblkid-0:2.42.2-1.fc45.x86_ 100% | 65.2 MiB/s | 133.5 KiB | 00m00s [149/188] libuuid-0:2.42.2-1.fc45.x86_6 100% | 26.7 MiB/s | 27.3 KiB | 00m00s [150/188] libmount-0:2.42.2-1.fc45.x86_ 100% | 86.3 MiB/s | 176.8 KiB | 00m00s [151/188] libsmartcols-0:2.42.2-1.fc45. 100% | 43.1 MiB/s | 88.3 KiB | 00m00s [152/188] libfdisk-0:2.42.2-1.fc45.x86_ 100% | 165.4 MiB/s | 169.3 KiB | 00m00s [153/188] liblastlog2-0:2.42.2-1.fc45.x 100% | 12.0 MiB/s | 24.6 KiB | 00m00s [154/188] alternatives-0:1.33-5.fc44.x8 100% | 3.3 MiB/s | 40.8 KiB | 00m00s [155/188] binutils-0:2.46.50-12.fc45.x8 100% | 294.8 MiB/s | 6.2 MiB | 00m00s [156/188] jansson-0:2.14-4.fc44.x86_64 100% | 5.8 MiB/s | 47.1 KiB | 00m00s [157/188] pkgconf-pkg-config-0:2.5.1-1. 100% | 9.2 MiB/s | 9.5 KiB | 00m00s [158/188] pkgconf-0:2.5.1-1.fc45.x86_64 100% | 23.8 MiB/s | 48.7 KiB | 00m00s [159/188] pkgconf-m4-0:2.5.1-1.fc45.noa 100% | 13.4 MiB/s | 13.8 KiB | 00m00s [160/188] libpkgconf-0:2.5.1-1.fc45.x86 100% | 41.7 MiB/s | 42.7 KiB | 00m00s [161/188] p11-kit-trust-0:0.26.4-1.fc45 100% | 71.4 MiB/s | 146.3 KiB | 00m00s [162/188] fedora-release-0:45-0.8.noarc 100% | 6.2 MiB/s | 12.7 KiB | 00m00s [163/188] systemd-standalone-sysusers-0 100% | 202.2 MiB/s | 414.1 KiB | 00m00s [164/188] xxhash-libs-0:0.8.3-4.fc44.x8 100% | 4.0 MiB/s | 41.2 KiB | 00m00s [165/188] gdb-minimal-0:17.2-1.fc45.x86 100% | 263.3 MiB/s | 4.7 MiB | 00m00s [166/188] fedora-release-identity-basic 100% | 2.6 MiB/s | 13.4 KiB | 00m00s [167/188] libcurl-0:8.21.0-1.fc45.x86_6 100% | 117.6 MiB/s | 481.5 KiB | 00m00s [168/188] krb5-libs-0:1.22.2-8.fc45.x86 100% | 156.9 MiB/s | 803.6 KiB | 00m00s [169/188] libbrotli-0:1.2.0-4.fc45.x86_ 100% | 113.0 MiB/s | 347.1 KiB | 00m00s [170/188] libnghttp2-0:1.69.0-3.fc45.x8 100% | 75.2 MiB/s | 77.0 KiB | 00m00s [171/188] libnghttp3-0:1.17.0-1.fc45.x8 100% | 36.4 MiB/s | 74.6 KiB | 00m00s [172/188] libpsl-0:0.23.0-1.fc45.x86_64 100% | 32.9 MiB/s | 67.4 KiB | 00m00s [173/188] libssh-0:0.12.0-3.fc45.x86_64 100% | 142.7 MiB/s | 292.2 KiB | 00m00s [174/188] ngtcp2-0:1.22.1-2.fc45.x86_64 100% | 76.9 MiB/s | 157.5 KiB | 00m00s [175/188] ngtcp2-crypto-ossl-0:1.22.1-2 100% | 27.0 MiB/s | 27.7 KiB | 00m00s [176/188] keyutils-libs-0:1.6.3-7.fc44. 100% | 15.4 MiB/s | 31.5 KiB | 00m00s [177/188] libcom_err-0:1.47.4-1.fc45.x8 100% | 26.0 MiB/s | 26.6 KiB | 00m00s [178/188] libverto-0:0.3.2-12.fc44.x86_ 100% | 20.6 MiB/s | 21.1 KiB | 00m00s [179/188] publicsuffix-list-dafsa-0:202 100% | 59.5 MiB/s | 60.9 KiB | 00m00s [180/188] libfido2-0:1.17.0-3.fc45.x86_ 100% | 104.3 MiB/s | 106.8 KiB | 00m00s [181/188] libssh-config-0:0.12.0-3.fc45 100% | 8.5 MiB/s | 8.7 KiB | 00m00s [182/188] libcbor-0:0.14.0-2.fc45.x86_6 100% | 17.9 MiB/s | 36.6 KiB | 00m00s [183/188] policycoreutils-0:3.11-1.fc45 100% | 25.5 MiB/s | 261.0 KiB | 00m00s [184/188] selinux-policy-targeted-0:45. 100% | 323.9 MiB/s | 6.8 MiB | 00m00s [185/188] selinux-policy-0:45.8-1.fc45. 100% | 3.6 MiB/s | 33.3 KiB | 00m00s [186/188] rpm-plugin-selinux-0:6.0.91-3 100% | 5.8 MiB/s | 17.9 KiB | 00m00s [187/188] libselinux-utils-0:3.11-1.fc4 100% | 598.9 KiB/s | 111.4 KiB | 00m00s [188/188] libselinux-0:3.11-1.fc45.x86_ 100% | 316.4 KiB/s | 100.9 KiB | 00m00s -------------------------------------------------------------------------------- [188/188] Total 100% | 132.0 MiB/s | 71.8 MiB | 00m01s Running transaction Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. [ 1/190] Verify package files 100% | 712.0 B/s | 188.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-58.fc45.x86_64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-58.fc45.x86_64 >>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root/var/cache/dnf/copr_base-7dfcf63a2820cef1/packages/libselinux-3.11-1.fc45.x86_64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID dbd88c5df1967439: NOKEY >>> [RPM] failed to open /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root/etc/group for id/name lookup: No such file or directory [ 2/190] Prepare transaction 100% | 3.4 KiB/s | 188.0 B | 00m00s [ 3/190] Installing libgcc-0:16.1.1-4. 100% | 266.0 MiB/s | 272.4 KiB | 00m00s [ 4/190] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/190] Installing redhat-systemd-pre 100% | 0.0 B/s | 18.1 KiB | 00m00s [ 6/190] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/190] Installing publicsuffix-list- 100% | 0.0 B/s | 72.0 KiB | 00m00s [ 8/190] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 9/190] Installing fedora-gpg-keys-0: 100% | 59.3 MiB/s | 182.1 KiB | 00m00s [ 10/190] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 11/190] Installing fedora-repos-0:45- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 12/190] Installing fedora-release-com 100% | 7.3 MiB/s | 7.4 KiB | 00m00s [ 13/190] Installing fedora-release-0:4 100% | 20.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.1-1.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.1-1.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/190] Installing setup-0:2.15.1-1.f 100% | 39.7 MiB/s | 731.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/190] Installing filesystem-0:3.18- 100% | 2.5 MiB/s | 253.6 KiB | 00m00s [ 16/190] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/190] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 18/190] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 19/190] Installing coreutils-common-0 100% | 391.3 MiB/s | 11.0 MiB | 00m00s [ 20/190] Installing ncurses-base-0:6.6 100% | 86.7 MiB/s | 355.3 KiB | 00m00s [ 21/190] Installing bash-0:5.3.15-1.fc 100% | 201.8 MiB/s | 8.5 MiB | 00m00s [ 22/190] Installing glibc-common-0:2.4 100% | 39.6 MiB/s | 1.0 MiB | 00m00s [ 23/190] Installing glibc-gconv-extra- 100% | 299.5 MiB/s | 7.8 MiB | 00m00s [ 24/190] Installing glibc-0:2.43.9000- 100% | 146.2 MiB/s | 7.0 MiB | 00m00s [ 25/190] Installing ncurses-libs-0:6.6 100% | 238.0 MiB/s | 974.7 KiB | 00m00s [ 26/190] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/190] Installing zlib-ng-compat-0:2 100% | 162.5 MiB/s | 166.4 KiB | 00m00s [ 28/190] Installing bzip2-libs-0:1.0.8 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 29/190] Installing libgpg-error-0:1.6 100% | 38.9 MiB/s | 955.7 KiB | 00m00s [ 30/190] Installing libstdc++-0:16.1.1 100% | 385.7 MiB/s | 3.1 MiB | 00m00s [ 31/190] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB | 00m00s [ 32/190] Installing libgcrypt-0:1.12.2 100% | 331.7 MiB/s | 1.7 MiB | 00m00s [ 33/190] Installing readline-0:8.3-4.f 100% | 254.7 MiB/s | 521.6 KiB | 00m00s [ 34/190] Installing gmp-1:6.3.0-5.fc44 100% | 266.1 MiB/s | 817.5 KiB | 00m00s [ 35/190] Installing systemd-libs-0:261 100% | 340.3 MiB/s | 2.7 MiB | 00m00s [ 36/190] Installing xz-libs-1:5.8.3-1. 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [ 37/190] Installing libzstd-0:1.5.7-5. 100% | 311.6 MiB/s | 957.4 KiB | 00m00s [ 38/190] Installing elfutils-libelf-0: 100% | 388.6 MiB/s | 1.2 MiB | 00m00s [ 39/190] Installing libuuid-0:2.42.2-1 100% | 0.0 B/s | 38.2 KiB | 00m00s [ 40/190] Installing libacl-0:2.4.0-1.f 100% | 0.0 B/s | 44.7 KiB | 00m00s [ 41/190] Installing popt-0:1.19-10.fc4 100% | 68.0 MiB/s | 139.3 KiB | 00m00s [ 42/190] Installing sqlite-libs-0:3.53 100% | 323.8 MiB/s | 1.6 MiB | 00m00s [ 43/190] Installing npth-0:1.8-4.fc44. 100% | 0.0 B/s | 50.6 KiB | 00m00s [ 44/190] Installing libblkid-0:2.42.2- 100% | 276.6 MiB/s | 283.2 KiB | 00m00s [ 45/190] Installing elfutils-libs-0:0. 100% | 350.2 MiB/s | 717.2 KiB | 00m00s [ 46/190] Installing libsepol-0:3.11-1. 100% | 282.3 MiB/s | 867.2 KiB | 00m00s [ 47/190] Installing gnupg2-gpgconf-0:2 100% | 10.2 MiB/s | 251.8 KiB | 00m00s [ 48/190] Installing libattr-0:2.6.0-1. 100% | 24.7 MiB/s | 25.2 KiB | 00m00s [ 49/190] Installing pcre2-0:10.47-1.fc 100% | 351.6 MiB/s | 720.0 KiB | 00m00s [ 50/190] Installing libselinux-0:3.11- 100% | 201.6 MiB/s | 206.5 KiB | 00m00s [ 51/190] Installing grep-0:3.12-3.fc44 100% | 38.6 MiB/s | 1.0 MiB | 00m00s [ 52/190] Installing sed-0:4.10-1.fc45. 100% | 37.0 MiB/s | 947.8 KiB | 00m00s [ 53/190] Installing findutils-1:4.11.0 100% | 72.5 MiB/s | 2.0 MiB | 00m00s [ 54/190] Installing libxcrypt-0:4.5.2- 100% | 144.5 MiB/s | 295.9 KiB | 00m00s [ 55/190] Installing libtasn1-0:4.21.0- 100% | 178.2 MiB/s | 182.4 KiB | 00m00s [ 56/190] Installing libunistring-0:1.1 100% | 346.9 MiB/s | 1.7 MiB | 00m00s [ 57/190] Installing libidn2-0:2.3.8-3. 100% | 68.7 MiB/s | 562.6 KiB | 00m00s [ 58/190] Installing crypto-policies-0: 100% | 38.9 MiB/s | 159.5 KiB | 00m00s [ 59/190] Installing xz-1:5.8.3-1.fc45. 100% | 48.5 MiB/s | 1.4 MiB | 00m00s [ 60/190] Installing libmount-0:2.42.2- 100% | 198.2 MiB/s | 405.9 KiB | 00m00s [ 61/190] Installing gnupg2-verify-0:2. 100% | 16.1 MiB/s | 361.7 KiB | 00m00s [ 62/190] Installing dwz-0:0.17-1.fc45. 100% | 13.0 MiB/s | 292.5 KiB | 00m00s [ 63/190] Installing mpfr-0:4.2.2-3.fc4 100% | 276.9 MiB/s | 850.8 KiB | 00m00s [ 64/190] Installing gawk-0:5.4.0-3.fc4 100% | 79.5 MiB/s | 2.2 MiB | 00m00s [ 65/190] Installing libksba-0:1.8.0-1. 100% | 211.8 MiB/s | 433.7 KiB | 00m00s [ 66/190] Installing unzip-0:6.0-69.fc4 100% | 19.1 MiB/s | 449.3 KiB | 00m00s [ 67/190] Installing file-libs-0:5.47-3 100% | 641.4 MiB/s | 12.2 MiB | 00m00s [ 68/190] Installing file-0:5.47-3.fc45 100% | 4.6 MiB/s | 102.7 KiB | 00m00s [ 69/190] Installing diffutils-0:3.12-5 100% | 60.5 MiB/s | 1.6 MiB | 00m00s [ 70/190] Installing libeconf-0:0.7.9-3 100% | 64.9 MiB/s | 66.4 KiB | 00m00s [ 71/190] Installing libcap-ng-0:0.9.3- 100% | 69.0 MiB/s | 70.6 KiB | 00m00s [ 72/190] Installing audit-libs-0:4.1.4 100% | 383.9 MiB/s | 393.1 KiB | 00m00s [ 73/190] Installing pam-libs-0:1.7.2-3 100% | 133.7 MiB/s | 136.9 KiB | 00m00s [ 74/190] Installing libcap-0:2.78-1.fc 100% | 9.6 MiB/s | 217.2 KiB | 00m00s [ 75/190] Installing libsemanage-0:3.11 100% | 310.7 MiB/s | 318.1 KiB | 00m00s [ 76/190] Installing lua-libs-0:5.5.0-1 100% | 292.4 MiB/s | 299.4 KiB | 00m00s [ 77/190] Installing json-c-0:0.18-8.fc 100% | 81.9 MiB/s | 83.9 KiB | 00m00s [ 78/190] Installing libffi-0:3.5.2-2.f 100% | 87.0 MiB/s | 89.1 KiB | 00m00s [ 79/190] Installing p11-kit-0:0.26.4-1 100% | 85.0 MiB/s | 2.6 MiB | 00m00s [ 80/190] Installing libsmartcols-0:2.4 100% | 185.0 MiB/s | 189.5 KiB | 00m00s [ 81/190] Installing alternatives-0:1.3 100% | 2.8 MiB/s | 63.6 KiB | 00m00s [ 82/190] Installing p11-kit-trust-0:0. 100% | 16.7 MiB/s | 480.1 KiB | 00m00s [ 83/190] Installing ngtcp2-0:1.22.1-2. 100% | 164.0 MiB/s | 335.8 KiB | 00m00s [ 84/190] Installing util-linux-core-0: 100% | 53.7 MiB/s | 1.5 MiB | 00m00s [ 85/190] Installing liblastlog2-0:2.42 100% | 7.8 MiB/s | 39.8 KiB | 00m00s [ 86/190] Installing zip-0:3.0-45.fc44. 100% | 27.4 MiB/s | 701.9 KiB | 00m00s [ 87/190] Installing gnupg2-keyboxd-0:2 100% | 33.0 MiB/s | 202.5 KiB | 00m00s [ 88/190] Installing libpsl-0:0.23.0-1. 100% | 79.6 MiB/s | 81.5 KiB | 00m00s [ 89/190] Installing tar-2:1.35-8.fc44. 100% | 99.3 MiB/s | 3.0 MiB | 00m00s [ 90/190] Installing linkdupes-0:0.7.3- 100% | 33.2 MiB/s | 782.3 KiB | 00m00s [ 91/190] Installing libselinux-utils-0 100% | 13.6 MiB/s | 320.4 KiB | 00m00s [ 92/190] Installing libfdisk-0:2.42.2- 100% | 192.1 MiB/s | 393.4 KiB | 00m00s [ 93/190] Installing fips-provider-0:1. 100% | 372.6 MiB/s | 4.8 MiB | 00m00s [ 94/190] Installing openssl-libs-1:4.0 100% | 351.3 MiB/s | 6.7 MiB | 00m00s [ 95/190] Installing coreutils-0:9.11-4 100% | 137.8 MiB/s | 5.9 MiB | 00m00s [ 96/190] Installing ca-certificates-0: 100% | 2.1 MiB/s | 2.4 MiB | 00m01s [ 97/190] Installing gzip-0:1.14-3.fc45 100% | 15.9 MiB/s | 407.2 KiB | 00m00s [ 98/190] Installing util-linux-0:2.42. 100% | 85.4 MiB/s | 3.8 MiB | 00m00s [ 99/190] Installing policycoreutils-0: 100% | 26.5 MiB/s | 921.4 KiB | 00m00s [100/190] Installing selinux-policy-0:4 100% | 1.9 MiB/s | 34.5 KiB | 00m00s [101/190] Installing selinux-policy-tar 100% | 215.3 MiB/s | 15.1 MiB | 00m00s [102/190] Installing rpm-sequoia-0:1.10 100% | 347.3 MiB/s | 2.4 MiB | 00m00s [103/190] Installing libfsverity-0:1.7- 100% | 0.0 B/s | 25.4 KiB | 00m00s [104/190] Installing libevent-0:2.1.12- 100% | 319.9 MiB/s | 982.6 KiB | 00m00s [105/190] Installing ngtcp2-crypto-ossl 100% | 0.0 B/s | 52.5 KiB | 00m00s [106/190] Installing zstd-0:1.5.7-5.fc4 100% | 19.8 MiB/s | 506.0 KiB | 00m00s [107/190] Installing libxml2-0:2.13.9-2 100% | 65.0 MiB/s | 1.8 MiB | 00m00s [108/190] Installing libusb1-0:1.0.30-1 100% | 25.4 MiB/s | 181.8 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-10.fc45.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-10.fc45.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [109/190] Installing tpm2-tss-0:4.1.3-1 100% | 270.3 MiB/s | 1.6 MiB | 00m00s [110/190] Installing ima-evm-utils-libs 100% | 56.5 MiB/s | 57.9 KiB | 00m00s [111/190] Installing gnupg2-gpg-agent-0 100% | 23.3 MiB/s | 690.6 KiB | 00m00s [112/190] Installing nettle-0:3.10.1-3. 100% | 259.6 MiB/s | 797.4 KiB | 00m00s [113/190] Installing gnutls-0:3.8.13-1. 100% | 384.9 MiB/s | 3.8 MiB | 00m00s [114/190] Installing bzip2-0:1.0.8-23.f 100% | 4.2 MiB/s | 99.5 KiB | 00m00s [115/190] Installing add-determinism-0: 100% | 77.9 MiB/s | 2.2 MiB | 00m00s [116/190] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [117/190] Installing cpio-0:2.15-9.fc44 100% | 46.0 MiB/s | 1.1 MiB | 00m00s [118/190] Installing ed-0:1.22.5-2.fc45 100% | 6.7 MiB/s | 152.0 KiB | 00m00s [119/190] Installing patch-0:2.8-4.fc44 100% | 10.1 MiB/s | 228.1 KiB | 00m00s [120/190] Installing lz4-libs-0:1.10.0- 100% | 154.6 MiB/s | 158.4 KiB | 00m00s [121/190] Installing libarchive-0:3.8.8 100% | 326.1 MiB/s | 1.0 MiB | 00m00s [122/190] Installing libgomp-0:16.1.1-4 100% | 282.6 MiB/s | 578.8 KiB | 00m00s [123/190] Installing libtool-ltdl-0:2.5 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [124/190] Installing gdbm-libs-1:1.23-1 100% | 128.3 MiB/s | 131.3 KiB | 00m00s [125/190] Installing cyrus-sasl-lib-0:2 100% | 83.5 MiB/s | 2.3 MiB | 00m00s [126/190] Installing openldap-0:2.6.13- 100% | 221.9 MiB/s | 681.7 KiB | 00m00s [127/190] Installing gnupg2-dirmngr-0:2 100% | 21.4 MiB/s | 636.7 KiB | 00m00s [128/190] Installing gnupg2-0:2.4.9-16. 100% | 162.6 MiB/s | 6.5 MiB | 00m00s [129/190] Installing gpgverify-0:2.2-4. 100% | 0.0 B/s | 9.4 KiB | 00m00s [130/190] Installing jansson-0:2.14-4.f 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [131/190] Installing libpkgconf-0:2.5.1 100% | 89.1 MiB/s | 91.3 KiB | 00m00s [132/190] Installing pkgconf-0:2.5.1-1. 100% | 4.2 MiB/s | 95.2 KiB | 00m00s [133/190] Installing pkgconf-pkg-config 100% | 84.4 KiB/s | 1.8 KiB | 00m00s [134/190] Installing systemd-standalone 100% | 38.3 MiB/s | 941.0 KiB | 00m00s [135/190] Installing rpm-libs-0:6.0.91- 100% | 274.8 MiB/s | 1.1 MiB | 00m00s [136/190] Installing rpm-sign-libs-0:6. 100% | 39.5 MiB/s | 40.5 KiB | 00m00s [137/190] Installing rpm-build-libs-0:6 100% | 282.4 MiB/s | 289.2 KiB | 00m00s [138/190] Installing xxhash-libs-0:0.8. 100% | 93.2 MiB/s | 95.4 KiB | 00m00s [139/190] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [140/190] Installing libnghttp2-0:1.69. 100% | 163.4 MiB/s | 167.3 KiB | 00m00s [141/190] Installing libnghttp3-0:1.17. 100% | 160.8 MiB/s | 164.7 KiB | 00m00s [142/190] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.6 KiB | 00m00s [143/190] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.0 KiB | 00m00s [144/190] Installing libverto-0:0.3.2-1 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [145/190] Installing krb5-libs-0:1.22.2 100% | 298.4 MiB/s | 2.4 MiB | 00m00s [146/190] Installing libcbor-0:0.14.0-2 100% | 82.9 MiB/s | 84.9 KiB | 00m00s [147/190] Installing libfido2-0:1.17.0- 100% | 252.0 MiB/s | 258.1 KiB | 00m00s [148/190] Installing libssh-0:0.12.0-3. 100% | 352.2 MiB/s | 721.3 KiB | 00m00s [149/190] Installing libcurl-0:8.21.0-1 100% | 351.4 MiB/s | 1.1 MiB | 00m00s [150/190] Installing elfutils-debuginfo 100% | 3.5 MiB/s | 82.1 KiB | 00m00s [151/190] Installing elfutils-0:0.195-2 100% | 103.0 MiB/s | 3.0 MiB | 00m00s [152/190] Installing binutils-0:2.46.50 100% | 310.5 MiB/s | 28.3 MiB | 00m00s [153/190] Installing gdb-minimal-0:17.2 100% | 232.2 MiB/s | 14.2 MiB | 00m00s [154/190] Installing debugedit-0:5.3-2. 100% | 9.5 MiB/s | 224.1 KiB | 00m00s [155/190] Installing curl-0:8.21.0-1.fc 100% | 15.5 MiB/s | 490.6 KiB | 00m00s [156/190] Installing rpm-0:6.0.91-3.fc4 100% | 59.6 MiB/s | 2.5 MiB | 00m00s [157/190] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [158/190] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [159/190] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [160/190] Installing lua-srpm-macros-0: 100% | 380.5 KiB/s | 1.9 KiB | 00m00s [161/190] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.6 KiB | 00m00s [162/190] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [163/190] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [164/190] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [165/190] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [166/190] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [167/190] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [168/190] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [169/190] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [170/190] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [171/190] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [172/190] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [173/190] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [174/190] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [175/190] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [176/190] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [177/190] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [178/190] Installing redhat-rpm-config- 100% | 93.0 MiB/s | 190.4 KiB | 00m00s [179/190] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [180/190] Installing rpm-build-0:6.0.91 100% | 12.1 MiB/s | 322.2 KiB | 00m00s [181/190] Installing erlang-srpm-macros 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [182/190] Installing pyproject-srpm-mac 100% | 0.0 B/s | 3.8 KiB | 00m00s [183/190] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [184/190] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [185/190] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [186/190] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [187/190] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.9 KiB | 00m00s [188/190] Installing which-0:2.25-1.fc4 100% | 3.5 MiB/s | 85.8 KiB | 00m00s [189/190] Installing shadow-utils-2:4.1 100% | 102.8 MiB/s | 4.1 MiB | 00m00s [190/190] Installing info-0:7.3-2.fc45. 100% | 53.2 KiB/s | 372.8 KiB | 00m07s Warning: skipped OpenPGP checks for 2 packages from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc45.noarch add-determinism-0.7.3-2.fc45.x86_64 alternatives-1.33-5.fc44.x86_64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.1.4-2.fc45.x86_64 bash-5.3.15-1.fc45.x86_64 binutils-2.46.50-12.fc45.x86_64 build-reproducibility-srpm-macros-0.7.3-2.fc45.noarch bzip2-1.0.8-23.fc44.x86_64 bzip2-libs-1.0.8-23.fc44.x86_64 ca-certificates-2025.2.80_v9.0.304-8.fc45.noarch cmake-srpm-macros-4.3.0-4.fc45.noarch coreutils-9.11-4.fc45.x86_64 coreutils-common-9.11-4.fc45.x86_64 cpio-2.15-9.fc44.x86_64 crypto-policies-20260713-1.gitc42da77.fc45.noarch curl-8.21.0-1.fc45.x86_64 cyrus-sasl-lib-2.1.28-36.fc45.x86_64 debugedit-5.3-2.fc45.x86_64 diffutils-3.12-5.fc44.x86_64 dwz-0.17-1.fc45.x86_64 ed-1.22.5-2.fc45.x86_64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.195-2.fc45.x86_64 elfutils-debuginfod-client-0.195-2.fc45.x86_64 elfutils-libelf-0.195-2.fc45.x86_64 elfutils-libs-0.195-2.fc45.x86_64 erlang-srpm-macros-0.3.11-1.fc45.noarch fedora-gpg-keys-45-0.1.noarch fedora-release-45-0.8.noarch fedora-release-common-45-0.8.noarch fedora-release-identity-basic-45-0.8.noarch fedora-repos-45-0.1.noarch fedora-repos-rawhide-45-0.1.noarch file-5.47-3.fc45.x86_64 file-libs-5.47-3.fc45.x86_64 filesystem-3.18-58.fc45.x86_64 filesystem-srpm-macros-3.18-58.fc45.noarch findutils-4.11.0-1.fc45.x86_64 fips-provider-1.5.2-1.fc45.x86_64 fonts-srpm-macros-5.0.0-3.fc45.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.4.0-3.fc45.x86_64 gdb-minimal-17.2-1.fc45.x86_64 gdbm-libs-1.23-11.fc44.x86_64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43.9000-22.fc45.x86_64 glibc-common-2.43.9000-22.fc45.x86_64 glibc-gconv-extra-2.43.9000-22.fc45.x86_64 glibc-minimal-langpack-2.43.9000-22.fc45.x86_64 gmp-6.3.0-5.fc44.x86_64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc45.noarch gnulib-l10n-20241231-3.fc45.noarch gnupg2-2.4.9-16.fc45.x86_64 gnupg2-dirmngr-2.4.9-16.fc45.x86_64 gnupg2-gpg-agent-2.4.9-16.fc45.x86_64 gnupg2-gpgconf-2.4.9-16.fc45.x86_64 gnupg2-keyboxd-2.4.9-16.fc45.x86_64 gnupg2-verify-2.4.9-16.fc45.x86_64 gnutls-3.8.13-1.fc45.x86_64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.x86_64 gzip-1.14-3.fc45.x86_64 ima-evm-utils-libs-1.6.2-11.fc45.x86_64 info-7.3-2.fc45.x86_64 jansson-2.14-4.fc44.x86_64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.x86_64 kernel-srpm-macros-1.0-29.fc45.noarch keyutils-libs-1.6.3-7.fc44.x86_64 krb5-libs-1.22.2-8.fc45.x86_64 libacl-2.4.0-1.fc45.x86_64 libarchive-3.8.8-2.fc45.x86_64 libassuan-2.5.7-5.fc44.x86_64 libattr-2.6.0-1.fc45.x86_64 libblkid-2.42.2-1.fc45.x86_64 libbrotli-1.2.0-4.fc45.x86_64 libcap-2.78-1.fc45.x86_64 libcap-ng-0.9.3-2.fc45.x86_64 libcbor-0.14.0-2.fc45.x86_64 libcom_err-1.47.4-1.fc45.x86_64 libcurl-8.21.0-1.fc45.x86_64 libeconf-0.7.9-3.fc44.x86_64 libevent-2.1.12-18.fc45.x86_64 libfdisk-2.42.2-1.fc45.x86_64 libffi-3.5.2-2.fc44.x86_64 libfido2-1.17.0-3.fc45.x86_64 libfsverity-1.7-3.fc45.x86_64 libgcc-16.1.1-4.fc45.x86_64 libgcrypt-1.12.2-1.fc45.x86_64 libgomp-16.1.1-4.fc45.x86_64 libgpg-error-1.61-1.fc45.x86_64 libidn2-2.3.8-3.fc44.x86_64 libksba-1.8.0-1.fc45.x86_64 liblastlog2-2.42.2-1.fc45.x86_64 libmount-2.42.2-1.fc45.x86_64 libnghttp2-1.69.0-3.fc45.x86_64 libnghttp3-1.17.0-1.fc45.x86_64 libpkgconf-2.5.1-1.fc45.x86_64 libpsl-0.23.0-1.fc45.x86_64 libselinux-3.11-1.fc45.x86_64 libselinux-utils-3.11-1.fc45.x86_64 libsemanage-3.11-1.fc45.x86_64 libsepol-3.11-1.fc45.x86_64 libsmartcols-2.42.2-1.fc45.x86_64 libssh-0.12.0-3.fc45.x86_64 libssh-config-0.12.0-3.fc45.noarch libstdc++-16.1.1-4.fc45.x86_64 libtasn1-4.21.0-1.fc45.x86_64 libtool-ltdl-2.5.4-10.fc44.x86_64 libunistring-1.1-11.fc44.x86_64 libusb1-1.0.30-1.fc45.x86_64 libuuid-2.42.2-1.fc45.x86_64 libverto-0.3.2-12.fc44.x86_64 libxcrypt-4.5.2-3.fc44.x86_64 libxml2-2.13.9-2.fc45.x86_64 libzstd-1.5.7-5.fc44.x86_64 linkdupes-0.7.3-2.fc45.x86_64 lua-libs-5.5.0-1.fc45.x86_64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.x86_64 mpfr-4.2.2-3.fc44.x86_64 ncurses-base-6.6-2.fc45.noarch ncurses-libs-6.6-2.fc45.x86_64 nettle-3.10.1-3.fc44.x86_64 ngtcp2-1.22.1-2.fc45.x86_64 ngtcp2-crypto-ossl-1.22.1-2.fc45.x86_64 npth-1.8-4.fc44.x86_64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.13-2.fc45.x86_64 openssl-libs-4.0.1-3.fc45.x86_64 p11-kit-0.26.4-1.fc45.x86_64 p11-kit-trust-0.26.4-1.fc45.x86_64 package-notes-srpm-macros-0.20-1.fc45.noarch pam-libs-1.7.2-3.fc45.x86_64 patch-2.8-4.fc44.x86_64 pcre2-10.47-1.fc44.1.x86_64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc45.x86_64 pkgconf-m4-2.5.1-1.fc45.noarch pkgconf-pkg-config-2.5.1-1.fc45.x86_64 policycoreutils-3.11-1.fc45.x86_64 popt-1.19-10.fc44.x86_64 publicsuffix-list-dafsa-20260624-1.fc45.noarch pyproject-srpm-macros-1.22.2-1.fc45.noarch python-srpm-macros-3.15-1.fc45.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.1-1.fc45.noarch readline-8.3-4.fc44.x86_64 redhat-rpm-config-344-5.fc45.noarch redhat-systemd-presets-102-2.fc45.noarch redhat-systemd-presets-common-102-2.fc45.noarch rpm-6.0.91-3.fc45.x86_64 rpm-build-6.0.91-3.fc45.x86_64 rpm-build-libs-6.0.91-3.fc45.x86_64 rpm-libs-6.0.91-3.fc45.x86_64 rpm-plugin-selinux-6.0.91-3.fc45.x86_64 rpm-sequoia-1.10.2-4.fc45.x86_64 rpm-sign-libs-6.0.91-3.fc45.x86_64 rust-srpm-macros-28.4-3.fc44.noarch sed-4.10-1.fc45.x86_64 selinux-policy-45.8-1.fc45.noarch selinux-policy-targeted-45.8-1.fc45.noarch setup-2.15.1-1.fc45.noarch shadow-utils-4.19.3-3.fc45.x86_64 sqlite-libs-3.53.3-1.fc45.x86_64 systemd-libs-261.1-2.fc45.x86_64 systemd-standalone-sysusers-261.1-2.fc45.x86_64 tar-1.35-8.fc44.x86_64 tpm2-tss-4.1.3-10.fc45.x86_64 tree-sitter-srpm-macros-0.4.6-1.fc45.noarch unzip-6.0-69.fc44.x86_64 util-linux-2.42.2-1.fc45.x86_64 util-linux-core-2.42.2-1.fc45.x86_64 which-2.25-1.fc45.x86_64 xxhash-libs-0.8.3-4.fc44.x86_64 xz-5.8.3-1.fc45.x86_64 xz-libs-5.8.3-1.fc45.x86_64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.x86_64 zlib-ng-compat-2.3.3-5.fc45.x86_64 zstd-1.5.7-5.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1782604800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-2.fc45.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-uzesat48/openbabel/openbabel.spec) Config(child) 0 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.2.0-2.fc45.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1784028058.078625/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1784028058.078625/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.91-3.fc45.x86_64 rpm-sequoia-1.10.2-4.fc45.x86_64 dnf5-5.4.2.1-6.fc45.x86_64 dnf5-plugins-5.4.2.1-6.fc45.x86_64 Finish: chroot init Start: build phase for openbabel-3.2.0-2.fc45.src.rpm Start: build setup for openbabel-3.2.0-2.fc45.src.rpm Building target platforms: x86_64 Building for target x86_64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1782604800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-2.fc45.src.rpm Updating and loading repositories: fedora 100% | 15.7 KiB/s | 11.9 KiB | 00m01s Additional repo copr_mtasaka_ruby_40_u 100% | 2.2 KiB/s | 1.5 KiB | 00m01s Copr repository 100% | 2.2 KiB/s | 1.5 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: ImageMagick x86_64 1:7.1.2.27-1.fc45 fedora 88.0 KiB boost-devel x86_64 0:1.90.0-11.fc45 fedora 142.7 MiB cmake x86_64 0:4.3.0-4.fc45 fedora 40.4 MiB desktop-file-utils x86_64 0:0.28-7.fc45 fedora 222.2 KiB dos2unix x86_64 0:7.5.5-1.fc45 fedora 831.2 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB gcc-c++ x86_64 0:16.1.1-4.fc45 fedora 46.8 MiB inchi-devel x86_64 0:1.0.6-14.fc44 fedora 97.0 KiB libxml2-devel x86_64 0:2.13.9-2.fc45 fedora 3.2 MiB make x86_64 1:4.4.1-12.fc44 fedora 1.8 MiB perl-devel x86_64 4:5.42.2-524.fc45 fedora 3.8 MiB perl-generators noarch 0:1.16-9.fc44 fedora 21.8 KiB python3-devel x86_64 0:3.15.0~b3-1.fc45 fedora 2.4 MiB python3-setuptools noarch 0:83.0.0-1.fc45 fedora 7.3 MiB rapidjson-devel x86_64 0:1.1.0^20241222git24b5e7a-4.fc44 fedora 785.8 KiB ruby-devel x86_64 0:4.0.6-35.100.fc45 copr_mtasaka_ruby_40_updates_01 1.6 MiB swig x86_64 0:4.4.1-7.fc45 copr_base 6.1 MiB wxGTK-devel x86_64 0:3.2.9-2.fc44 fedora 74.3 KiB Installing dependencies: ImageMagick-libs x86_64 1:7.1.2.27-1.fc45 fedora 9.0 MiB LibRaw x86_64 0:0.22.1-1.fc45 fedora 2.6 MiB SDL3 x86_64 0:3.4.12-1.fc45 fedora 3.2 MiB abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB adobe-mappings-cmap noarch 0:20231115-5.fc44 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 0:20231115-5.fc44 fedora 582.1 KiB adobe-mappings-pdf noarch 0:20190401-12.fc44 fedora 4.4 MiB adwaita-cursor-theme noarch 0:50.0-1.fc45 fedora 11.4 MiB adwaita-icon-theme noarch 0:50.0-1.fc45 fedora 1.1 MiB adwaita-icon-theme-legacy noarch 0:46.2-7.fc45 fedora 2.1 MiB alsa-lib x86_64 0:1.2.16.1-1.fc45 fedora 1.5 MiB annobin-docs noarch 0:13.24-1.fc45 fedora 99.7 KiB annobin-plugin-gcc x86_64 0:13.24-1.fc45 fedora 708.9 KiB at-spi2-atk x86_64 0:2.61.0-1.fc45 fedora 284.1 KiB at-spi2-atk-devel x86_64 0:2.61.0-1.fc45 fedora 1.6 KiB at-spi2-core x86_64 0:2.61.0-1.fc45 fedora 1.6 MiB at-spi2-core-devel x86_64 0:2.61.0-1.fc45 fedora 4.5 MiB atk x86_64 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fedora 1.1 MiB libxcb-devel x86_64 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel x86_64 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon x86_64 0:1.13.1-2.fc44 fedora 432.2 KiB libxkbcommon-devel x86_64 0:1.13.1-2.fc44 fedora 393.4 KiB libxshmfence x86_64 0:1.3.2-8.fc44 fedora 12.3 KiB libxslt x86_64 0:1.1.43-7.fc45 fedora 471.8 KiB libyaml x86_64 0:0.2.5-18.fc44 fedora 138.5 KiB libyuv x86_64 0:0-0.62.20260213git6067afd.fc45 fedora 683.6 KiB libzip x86_64 0:1.11.4-4.fc45 fedora 143.8 KiB llvm-filesystem x86_64 0:22.1.8-10.fc45 fedora 0.0 B llvm-libs x86_64 0:22.1.8-10.fc45 fedora 140.5 MiB lm_sensors-libs x86_64 0:3.6.0-24.fc44 fedora 85.7 KiB lzo x86_64 0:2.10-16.fc44 fedora 174.8 KiB lzo-devel x86_64 0:2.10-16.fc44 fedora 212.2 KiB lzo-minilzo x86_64 0:2.10-16.fc44 fedora 36.6 KiB mesa-dri-drivers x86_64 0:26.1.4-1.fc45 fedora 52.3 MiB mesa-filesystem x86_64 0:26.1.4-1.fc45 fedora 3.6 KiB mesa-libEGL x86_64 0:26.1.4-1.fc45 fedora 394.5 KiB mesa-libGL x86_64 0:26.1.4-1.fc45 fedora 370.1 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KiB perl-AutoSplit noarch 0:5.74-524.fc45 fedora 23.1 KiB perl-B x86_64 0:1.89-524.fc45 fedora 501.2 KiB perl-Benchmark noarch 0:1.27-524.fc45 fedora 36.4 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-524.fc45 fedora 25.4 KiB perl-Data-Dumper x86_64 0:2.192-523.fc45 fedora 115.5 KiB perl-Devel-PPPort x86_64 0:3.73-522.fc44 fedora 889.6 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 x86_64 0:2.59-521.fc44 fedora 59.6 KiB perl-DynaLoader x86_64 0:1.57-524.fc45 fedora 32.1 KiB perl-Encode x86_64 4:3.24-524.fc45 fedora 4.7 MiB perl-Errno x86_64 0:1.38-524.fc45 fedora 8.4 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-ExtUtils-Command noarch 2:7.78-1.fc45 fedora 9.6 KiB perl-ExtUtils-Constant noarch 0:0.25-524.fc45 fedora 85.9 KiB perl-ExtUtils-Install noarch 0:2.22-521.fc44 fedora 85.5 KiB perl-ExtUtils-MakeMaker noarch 2:7.78-1.fc45 fedora 739.7 KiB perl-ExtUtils-Manifest noarch 1:1.75-521.fc44 fedora 84.8 KiB perl-ExtUtils-ParseXS noarch 1:3.63-1.fc45 fedora 721.6 KiB perl-Fcntl x86_64 0:1.20-524.fc45 fedora 48.7 KiB perl-Fedora-VSP noarch 0:0.001-38.fc44 fedora 39.7 KiB perl-File-Basename noarch 0:2.86-524.fc45 fedora 14.0 KiB perl-File-Compare noarch 0:1.100.800-524.fc45 fedora 5.6 KiB perl-File-Copy noarch 0:2.41-524.fc45 fedora 19.7 KiB perl-File-Find noarch 0:1.44-524.fc45 fedora 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-524.fc45 fedora 12.5 KiB perl-FileHandle noarch 0:2.05-524.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-524.fc45 fedora 11.2 KiB perl-HTTP-Tiny noarch 0:0.096-2.fc45 fedora 162.4 KiB perl-Hash-Util x86_64 0:0.32-524.fc45 fedora 54.9 KiB perl-Hash-Util-FieldHash x86_64 0:1.27-524.fc45 fedora 62.5 KiB perl-IO x86_64 0:1.55-524.fc45 fedora 147.3 KiB perl-IO-Socket-IP noarch 0:0.44-1.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.099-1.fc45 fedora 726.9 KiB perl-IPC-Open3 noarch 0:1.24-524.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 x86_64 0:3.16-521.fc44 fedora 41.9 KiB perl-Net-SSLeay x86_64 0:1.96-3.fc45 fedora 1.3 MiB perl-POSIX x86_64 0:2.23-524.fc45 fedora 229.4 KiB perl-PathTools x86_64 0:3.95-1.fc45 fedora 179.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.48-2.fc45 fedora 565.9 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.70-2.fc44 fedora 144.8 KiB perl-SelectSaver noarch 0:1.02-524.fc45 fedora 2.2 KiB perl-Socket x86_64 4:2.041-1.fc45 fedora 120.7 KiB perl-Storable x86_64 1:3.41-1.fc45 fedora 235.1 KiB perl-Symbol noarch 0:1.09-524.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-Test-Harness noarch 1:3.52-5.fc44 fedora 560.8 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9780-1.fc45 fedora 115.7 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.35-1.fc45 fedora 268.2 KiB perl-base noarch 0:2.27-524.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-fields noarch 0:2.27-524.fc45 fedora 11.9 KiB perl-if noarch 0:0.61.000-524.fc45 fedora 5.8 KiB perl-interpreter x86_64 4:5.42.2-524.fc45 fedora 118.7 KiB perl-lib x86_64 0:0.65-524.fc45 fedora 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs x86_64 4:5.42.2-524.fc45 fedora 11.6 MiB perl-locale noarch 0:1.13-524.fc45 fedora 6.1 KiB perl-macros noarch 4:5.42.2-524.fc45 fedora 5.5 KiB perl-mro x86_64 0:1.29-524.fc45 fedora 41.4 KiB perl-overload noarch 0:1.40-524.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.02-524.fc45 fedora 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-524.fc45 fedora 3.9 KiB perl-version x86_64 9:0.99.34-1.fc45 fedora 128.7 KiB pixman x86_64 0:0.46.2-3.fc44 fedora 718.2 KiB pixman-devel x86_64 0:0.46.2-3.fc44 fedora 56.1 KiB pulseaudio-libs x86_64 0:17.0-10.fc45 fedora 3.4 MiB pyproject-rpm-macros noarch 0:1.22.2-1.fc45 fedora 147.2 KiB python-pip-wheel noarch 0:26.1.2-1.fc45 fedora 1.2 MiB python-rpm-macros noarch 0:3.15-1.fc45 fedora 28.0 KiB python3 x86_64 0:3.15.0~b3-1.fc45 fedora 28.7 KiB python3-libs x86_64 0:3.15.0~b3-1.fc45 fedora 48.0 MiB python3-numpy x86_64 1:2.5.1-1.fc45 fedora 42.8 MiB python3-numpy-f2py x86_64 1:2.5.1-1.fc45 fedora 2.1 MiB python3-packaging noarch 0:26.2-2.fc45 fedora 1.0 MiB python3-pyparsing noarch 0:3.1.2-17.fc45 fedora 1.0 MiB python3-rpm-generators noarch 0:14-15.fc45 fedora 81.7 KiB python3-rpm-macros noarch 0:3.15-1.fc45 fedora 6.5 KiB rav1e-libs x86_64 0:0.8.1-3.fc44 fedora 3.1 MiB rhash x86_64 0:1.4.5-4.fc44 fedora 354.8 KiB ruby x86_64 0:4.0.6-35.100.fc45 copr_mtasaka_ruby_40_updates_01 97.9 KiB ruby-default-gems noarch 0:4.0.6-35.100.fc45 copr_mtasaka_ruby_40_updates_01 64.3 KiB ruby-libs x86_64 0:4.0.6-35.100.fc45 copr_mtasaka_ruby_40_updates_01 15.4 MiB rubygem-psych x86_64 0:5.3.1-35.100.fc45 copr_mtasaka_ruby_40_updates_01 142.9 KiB rubygems noarch 0:4.0.16-35.100.fc45 copr_mtasaka_ruby_40_updates_01 1.5 MiB rubypick noarch 0:1.1.1-24.fc44 fedora 4.4 KiB sdl2-compat x86_64 0:2.32.70-1.fc45 fedora 412.3 KiB shared-mime-info x86_64 0:2.5.1-1.fc45 fedora 6.6 MiB spirv-tools-libs x86_64 0:2026.2-2.fc45 fedora 6.3 MiB svt-av1-libs x86_64 0:3.1.2-2.fc44 fedora 5.6 MiB sysprof-capture-devel x86_64 0:51~alpha-1.fc45 fedora 823.3 KiB systemd-devel x86_64 0:261.1-2.fc45 fedora 623.2 KiB systemd-rpm-macros noarch 0:261.1-2.fc45 fedora 8.5 KiB systemtap-sdt-devel x86_64 0:5.5-2.fc45 fedora 184.5 KiB systemtap-sdt-dtrace x86_64 0:5.5-2.fc45 fedora 181.1 KiB tzdata noarch 0:2026b-1.fc45 fedora 1.2 MiB urw-base35-bookman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-c059-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 0:20200910-28.fc45 fedora 84.3 KiB urw-base35-fonts noarch 0:20200910-28.fc45 fedora 5.3 KiB urw-base35-fonts-common noarch 0:20200910-28.fc45 fedora 37.4 KiB urw-base35-gothic-fonts noarch 0:20200910-28.fc45 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 0:20200910-28.fc45 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 0:20200910-28.fc45 fedora 2.4 MiB urw-base35-p052-fonts noarch 0:20200910-28.fc45 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 0:20200910-28.fc45 fedora 64.9 KiB urw-base35-z003-fonts noarch 0:20200910-28.fc45 fedora 390.8 KiB vim-filesystem noarch 2:9.2.780-1.fc45 fedora 40.0 B vulkan-loader x86_64 0:1.4.350.0-1.fc45 fedora 594.0 KiB wayland-devel x86_64 0:1.25.0-1.fc45 fedora 711.8 KiB webkit2gtk4.1 x86_64 0:2.53.4-1.fc45 fedora 93.2 MiB wxBase x86_64 0:3.2.9-2.fc44 fedora 3.0 MiB wxBase-devel x86_64 0:3.2.9-2.fc44 fedora 6.7 MiB wxGTK x86_64 0:3.2.9-2.fc44 fedora 16.7 MiB wxGTK-gl x86_64 0:3.2.9-2.fc44 fedora 102.4 KiB wxGTK-i18n noarch 0:3.2.9-2.fc44 fedora 5.7 MiB wxGTK-media x86_64 0:3.2.9-2.fc44 fedora 86.3 KiB wxGTK-webview x86_64 0:3.2.9-2.fc44 fedora 199.7 KiB xdg-dbus-proxy x86_64 0:0.1.7-1.fc45 fedora 90.6 KiB xkeyboard-config noarch 0:2.47-1.fc45 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB xprop x86_64 0:1.2.8-5.fc44 fedora 54.5 KiB xz-devel x86_64 1:5.8.3-1.fc45 fedora 258.8 KiB zlib-ng-compat-devel x86_64 0:2.3.3-5.fc45 fedora 107.0 KiB Transaction Summary: Installing: 465 packages Total size of inbound packages is 402 MiB. Need to download 402 MiB. After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B). 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python-rpm-macros-0:3.15-1.fc 100% | 9.7 MiB/s | 19.9 KiB | 00m00s [460/465] python3-rpm-generators-0:14-1 100% | 9.3 MiB/s | 28.5 KiB | 00m00s [461/465] python3-rpm-macros-0:3.15-1.f 100% | 4.0 MiB/s | 12.3 KiB | 00m00s [462/465] cmake-rpm-macros-0:4.3.0-4.fc 100% | 6.6 MiB/s | 13.6 KiB | 00m00s [463/465] ninja-build-0:1.13.2-4.fc45.x 100% | 66.4 MiB/s | 204.0 KiB | 00m00s [464/465] swig-0:4.4.1-7.fc45.x86_64 100% | 269.1 KiB/s | 1.6 MiB | 00m06s [465/465] libselinux-devel-0:3.11-1.fc4 100% | 22.9 KiB/s | 122.4 KiB | 00m05s -------------------------------------------------------------------------------- [465/465] Total 100% | 49.2 MiB/s | 402.0 MiB | 00m08s Running transaction [ 1/467] Verify package files 100% | 340.0 B/s | 465.0 B | 00m01s >>> Running %pretrans scriptlet: xkeyboard-config-0:2.47-1.fc45.noarch >>> Finished %pretrans scriptlet: xkeyboard-config-0:2.47-1.fc45.noarch >>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root/var/cache/dnf/copr_mtasaka_ruby_40_updates_01-b7eb792a53767e81/packages/ruby-devel-4.0.6-35.100.fc45.x86_64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 1505479e596dc27a: NOKEY >>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1784028058.078625/root/var/cache/dnf/copr_base-7dfcf63a2820cef1/packages/swig-4.4.1-7.fc45.x86_64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID dbd88c5df1967439: NOKEY [ 2/467] Prepare transaction 100% | 1.9 KiB/s | 465.0 B | 00m00s [ 3/467] Installing glib2-0:2.89.1-1.f 100% | 259.4 MiB/s | 15.3 MiB | 00m00s [ 4/467] Installing xorg-x11-proto-dev 100% | 256.5 MiB/s | 1.8 MiB | 00m00s [ 5/467] Installing boost-container-0: 100% | 68.7 MiB/s | 70.3 KiB | 00m00s [ 6/467] Installing libicu-0:78.3-7.fc 100% | 406.9 MiB/s | 37.8 MiB | 00m00s [ 7/467] Installing libjpeg-turbo-0:3. 100% | 404.0 MiB/s | 827.4 KiB | 00m00s [ 8/467] Installing expat-0:2.8.1-1.fc 100% | 14.6 MiB/s | 329.5 KiB | 00m00s [ 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100% | 240.4 MiB/s | 7.5 MiB | 00m00s [457/467] Installing perl-generators-0: 100% | 22.6 MiB/s | 23.2 KiB | 00m00s [458/467] Installing gcc-c++-0:16.1.1-4 100% | 316.6 MiB/s | 46.9 MiB | 00m00s [459/467] Installing annobin-plugin-gcc 100% | 53.4 MiB/s | 710.5 KiB | 00m00s [460/467] Installing gcc-plugin-annobin 100% | 4.8 MiB/s | 58.5 KiB | 00m00s [461/467] Installing ruby-devel-0:4.0.6 100% | 206.4 MiB/s | 1.7 MiB | 00m00s [462/467] Installing desktop-file-utils 100% | 8.2 MiB/s | 226.0 KiB | 00m00s [463/467] Installing eigen3-devel-0:5.0 100% | 311.0 MiB/s | 9.6 MiB | 00m00s [464/467] Installing rapidjson-devel-0: 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [465/467] Installing systemd-rpm-macros 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [466/467] Installing swig-0:4.4.1-7.fc4 100% | 124.8 MiB/s | 6.2 MiB | 00m00s [467/467] Installing dos2unix-0:7.5.5-1 100% | 1.5 MiB/s | 845.0 KiB | 00m01s Warning: skipped OpenPGP checks for 9 packages from repositories: copr_base, copr_mtasaka_ruby_40_updates_01 Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1782604800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-2.fc45.src.rpm Updating and loading repositories: fedora 100% | 14.6 KiB/s | 11.9 KiB | 00m01s Additional repo copr_mtasaka_ruby_40_u 100% | 2.0 KiB/s | 1.5 KiB | 00m01s Copr repository 100% | 2.0 KiB/s | 1.5 KiB | 00m01s Repositories loaded. Nothing to do. Package "ImageMagick-1:7.1.2.27-1.fc45.x86_64" is already installed. Package "boost-devel-1.90.0-11.fc45.x86_64" is already installed. Package "cmake-4.3.0-4.fc45.x86_64" is already installed. Package "desktop-file-utils-0.28-7.fc45.x86_64" is already installed. Package "dos2unix-7.5.5-1.fc45.x86_64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "gcc-c++-16.1.1-4.fc45.x86_64" is already installed. Package "inchi-devel-1.0.6-14.fc44.x86_64" is already installed. Package "libxml2-devel-2.13.9-2.fc45.x86_64" is already installed. Package "make-1:4.4.1-12.fc44.x86_64" is already installed. Package "perl-devel-4:5.42.2-524.fc45.x86_64" is already installed. Package "perl-generators-1.16-9.fc44.noarch" is already installed. Package "python3-devel-3.15.0~b3-1.fc45.x86_64" is already installed. Package "python3-setuptools-83.0.0-1.fc45.noarch" is already installed. Package "rapidjson-devel-1.1.0^20241222git24b5e7a-4.fc44.x86_64" is already installed. Package "ruby-devel-4.0.6-35.100.fc45.x86_64" is already installed. Package "swig-4.4.1-7.fc45.x86_64" is already installed. Package "wxGTK-devel-3.2.9-2.fc44.x86_64" is already installed. Finish: build setup for openbabel-3.2.0-2.fc45.src.rpm Start: rpmbuild openbabel-3.2.0-2.fc45.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1782604800 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.0I4x4L Creating(rpmbuild.env): /builddir/build/BUILD/openbabel-3.2.0-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/openbabel-3.2.0-build" RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="x86_64" RPM_OS="linux" RPM_BUILD_NCPUS="4" RPM_SPECPARTS_DIR="/builddir/build/BUILD/openbabel-3.2.0-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="openbabel" RPM_PACKAGE_VERSION="3.2.0" RPM_PACKAGE_RELEASE="2.fc45" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/openbabel-3.2.0-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.khBF36 + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + cd /builddir/build/BUILD/openbabel-3.2.0-build + rm -rf openbabel-openbabel-3-2-0 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-2-0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-2-0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (openbabel-perl.patch): + echo 'Patch #0 (openbabel-perl.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 patching file scripts/CMakeLists.txt Patch #1 (openbabel-plugindir.patch): + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 patching file CMakeLists.txt Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file openbabel-3.pc.cmake + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + magick src/GUI/babel.xpm -transparent white babel.png + pushd doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html + '[' -f roundtrip.html ']' ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YwXyYI + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd openbabel-openbabel-3-2-0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib64/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib64/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG:BOOL=ON -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -DEigen3_DIR:PATH=/usr/share/cmake/eigen3 -DRUBY_INSTDIR:PATH=/usr/lib64/ruby/vendor_ruby -- The C compiler identification is GNU 16.1.1 -- The CXX compiler identification is GNU 16.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.13.9") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.9") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for xdrstdio_create -- Looking for xdrstdio_create - not found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/16/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,cobol,algol68,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugzilla.redhat.com/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-16.1.1-build/gcc-16.1.1-20260703/obj-x86_64-redhat-linux/isl-install --enable-offload-targets=nvptx-none,amdgcn-amdhsa --enable-offload-defaulted --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-tls=gnu2 --with-arch_32=i686 --build=x86_64-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1 --disable-libssp Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 16.1.1 20260703 (Red Hat 16.1.1-4) (GCC) -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Perl: /usr/bin/perl (found version "5.42.2") -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found suitable version "1.90.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter -- Found SWIG: /usr/bin/swig (found version "4.4.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.4.1", minimum required is "2.0") -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter Development Development.Module Development.Embed -- Python bindings will be compiled -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.42.2") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found version "4.0.6") found components: Interpreter Development -- Ruby bindings will be compiled -- Configuring done (4.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR PYTHON_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [0/2] /usr/bin/cmake -P /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/CMakeFiles/VerifyGlobs.cmake [1/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h [2/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h [3/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/phmodel.txt PhModelData PhModelData > phmodeldata.h [4/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h [5/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h [6/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/resdata.txt ResidueData ResidueData > resdata.h [7/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/types.txt TypesData TypesData > types.h [8/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h [9/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h [10/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF src/CMakeFiles/openbabel.dir/base.cpp.o.d -o src/CMakeFiles/openbabel.dir/base.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/base.cpp [11/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF src/CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o src/CMakeFiles/openbabel.dir/bitvec.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bitvec.cpp [12/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF src/CMakeFiles/openbabel.dir/bond.cpp.o.d -o src/CMakeFiles/openbabel.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp: In constructor ‘OpenBabel::OBBond::OBBond()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ [13/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF src/CMakeFiles/openbabel.dir/atom.cpp.o.d -o src/CMakeFiles/openbabel.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [14/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bondtyper.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [15/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF src/CMakeFiles/openbabel.dir/alias.cpp.o.d -o src/CMakeFiles/openbabel.dir/alias.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/alias.h:20, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [16/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -MF src/CMakeFiles/openbabel.dir/macrocycle.cpp.o.d -o src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [17/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF src/CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [18/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF src/CMakeFiles/openbabel.dir/chains.cpp.o.d -o src/CMakeFiles/openbabel.dir/chains.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [19/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF src/CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [20/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF src/CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o src/CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [21/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF src/CMakeFiles/openbabel.dir/canon.cpp.o.d -o src/CMakeFiles/openbabel.dir/canon.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [22/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF src/CMakeFiles/openbabel.dir/data.cpp.o.d -o src/CMakeFiles/openbabel.dir/data.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [23/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF src/CMakeFiles/openbabel.dir/elements.cpp.o.d -o src/CMakeFiles/openbabel.dir/elements.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/elements.cpp [24/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [25/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF src/CMakeFiles/openbabel.dir/format.cpp.o.d -o src/CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/format.cpp [26/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF src/CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprint.cpp [27/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF src/CMakeFiles/openbabel.dir/grid.cpp.o.d -o src/CMakeFiles/openbabel.dir/grid.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp: In member function ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ [28/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF src/CMakeFiles/openbabel.dir/griddata.cpp.o.d -o src/CMakeFiles/openbabel.dir/griddata.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:31, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::GetOriginVector(double*) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:194:24: warning: ‘void OpenBabel::OBFloatGrid::GetMin(double*)’ is deprecated: Use GetMin() instead [-Wdeprecated-declarations] 194 | d->floatGrid.GetMin(o); | ~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:132:10: note: declared here 132 | void GetMin(double *a) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::SetLimits(const double*, const double*, const double*, const double*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:235:27: warning: ‘void OpenBabel::OBFloatGrid::SetLimits(const double*, const double*, const double*, const double*)’ is deprecated: Use vector version instead [-Wdeprecated-declarations] 235 | d->floatGrid.SetLimits(origin, x, y, z); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:229:10: note: declared here 229 | void SetLimits(const double origin[3], const double x[3], const double y[3], | ^~~~~~~~~ [29/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF src/CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o src/CMakeFiles/openbabel.dir/graphsym.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [30/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF src/CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o src/CMakeFiles/openbabel.dir/kekulize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp: In function ‘bool OpenBabel::NeedsDoubleBond(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:100:15: warning: unused variable ‘nbr’ [-Wunused-variable] 100 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ [31/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF src/CMakeFiles/openbabel.dir/generic.cpp.o.d -o src/CMakeFiles/openbabel.dir/generic.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [32/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF src/CMakeFiles/openbabel.dir/locale.cpp.o.d -o src/CMakeFiles/openbabel.dir/locale.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/locale.cpp [33/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF src/CMakeFiles/openbabel.dir/matrix.cpp.o.d -o src/CMakeFiles/openbabel.dir/matrix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/matrix.cpp [34/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF src/CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [35/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF src/CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o src/CMakeFiles/openbabel.dir/molchrg.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [36/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF src/CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o src/CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:435:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 435 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:437:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 437 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:447:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 447 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:457:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 457 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintEnergy()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:526:53: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 526 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:543:54: warning: ‘static double OpenBabel::OBForceField::VectorAngleDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 543 | theta = OBForceField::VectorAngleDerivative(da, db, dc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1585:19: note: declared here 1585 | static double VectorAngleDerivative(vector3 &a, vector3 &b, vector3 &c); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:562:56: warning: ‘static double OpenBabel::OBForceField::VectorTorsionDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 562 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1618:19: note: declared here 1618 | static double VectorTorsionDerivative(vector3 &a, vector3 &b, vector3 &c, vector3 &d); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:709:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:717:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:725:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:733:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 733 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:741:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 741 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 749 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::SystematicRotorSearchInitialize(unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1224:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1224 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1345:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1345 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1393:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1393 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1397:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1397 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1410 | for (int i=0; i >&, std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1619:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1619 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1638:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1638 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1678:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1678 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddIgnore(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:624:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM [(double *)&constraint + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddIgnore(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:621:20: note: ‘constraint’ declared here 621 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1433:29: warning: ‘minj’ may be used uninitialized [-Wmaybe-uninitialized] 1433 | rotorKey[idx + 1] = minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1359:21: note: ‘minj’ was declared here 1359 | unsigned int j, minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1450:11: warning: ‘minE’ may be used uninitialized [-Wmaybe-uninitialized] 1450 | if (minE < best_minE) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1360:22: note: ‘minE’ was declared here 1360 | double currentE, minE, best_minE; | ^~~~ [37/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF src/CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o src/CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstream.h:333, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp:54: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h: In instantiation of ‘bool zlib_stream::basic_zip_streambuf::zip_to_stream(char_type*, std::streamsize) [with charT = char; traits = std::char_traits; char_type = char; std::streamsize = long int]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:126:9: required from ‘zlib_stream::basic_zip_streambuf::int_type zlib_stream::basic_zip_streambuf::overflow(int_type) [with charT = char; traits = std::char_traits; int_type = int]’ 126 | if (zip_to_stream(this->pbase(), w)) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:118:1: required from here 118 | basic_zip_streambuf::overflow(int_type c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:242:44: warning: variable ‘total_written_byte_size’ set but not used [-Wunused-but-set-variable=] 242 | std::streamsize written_byte_size = 0, total_written_byte_size = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ [38/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF src/CMakeFiles/openbabel.dir/oberror.cpp.o.d -o src/CMakeFiles/openbabel.dir/oberror.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/oberror.cpp [39/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF src/CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [40/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF src/CMakeFiles/openbabel.dir/obutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/obutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [41/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF src/CMakeFiles/openbabel.dir/op.cpp.o.d -o src/CMakeFiles/openbabel.dir/op.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/op.cpp [42/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF src/CMakeFiles/openbabel.dir/mol.cpp.o.d -o src/CMakeFiles/openbabel.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::NumHvyAtoms() const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: warning: unnecessary parentheses in declaration of ‘i’ [-Wparentheses] 811 | vector::const_iterator(i); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: note: remove parentheses 811 | vector::const_iterator(i); | ^~~ | - - /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:1229:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1229 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘bool OpenBabel::OBMol::ConvertZeroBonds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3935:31: warning: unused variable ‘b’ [-Wunused-variable] 3935 | FOR_BONDS_OF_ATOM(b, bgn) { bcount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3937:31: warning: unused variable ‘b’ [-Wunused-variable] 3937 | FOR_BONDS_OF_ATOM(b, end) { ecount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ [43/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF src/CMakeFiles/openbabel.dir/obiter.cpp.o.d -o src/CMakeFiles/openbabel.dir/obiter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ [44/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF src/CMakeFiles/openbabel.dir/patty.cpp.o.d -o src/CMakeFiles/openbabel.dir/patty.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/patty.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [45/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF src/CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [46/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF src/CMakeFiles/openbabel.dir/plugin.cpp.o.d -o src/CMakeFiles/openbabel.dir/plugin.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/plugin.cpp [47/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF src/CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o src/CMakeFiles/openbabel.dir/parsmart.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In member function ‘bool OpenBabel::OBSmartsPattern::Init(const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1775 | if (strlen(buffer) > MaxSmartsLength) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1778:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1778 | delete[] _buffer; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In destructor ‘virtual OpenBabel::OBSmartsPattern::~OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [48/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF src/CMakeFiles/openbabel.dir/rand.cpp.o.d -o src/CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp:429:15: warning: ‘void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)’ defined but not used [-Wunused-function] 429 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ [49/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF src/CMakeFiles/openbabel.dir/query.cpp.o.d -o src/CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [50/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF src/CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ [51/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp: In member function ‘void OpenBabel::OBReactionFacadePrivate::FindComponents()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:122:15: warning: unused variable ‘atm’ [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ [52/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:425:5: warning: multi-line comment [-Wcomment] 425 | // / \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:970:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 970 | for (i=0; i&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:1473:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1473 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1480 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2022 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2032:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2032 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2047:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2047 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2053 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2120:98: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2120 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2251:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2251 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2253 | for (k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2277 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2588 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::flipSmall(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2998:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2998 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3037 | for (i=0; i, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3116:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:26: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘bool OpenBabel::compareAtoms(int, int, std::vector*>)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3306:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3306 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3314:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3314 | for (i=0; i*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3324 | for (int i=0; i&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3340:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const __gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘const int’} [-Wsign-compare] 3340 | if (l <= maxValues[i]) { /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TSimpleMolecule::correctOverlapped()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3389:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3389 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3442 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3452 | for (i=0; i*, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3555:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3555 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4231:19: warning: variable ‘nBondsOld’ set but not used [-Wunused-but-set-variable=] 4231 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:15: warning: variable ‘test1’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:21: warning: variable ‘test2’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:40: warning: variable ‘xCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:48: warning: variable ‘yCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4430:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4430 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4433 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4606 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4611 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4616 | for (i=0; i*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4651:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 4651 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4652:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4652 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4681:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4681 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4868:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4868 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4869:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4869 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4870:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4870 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4871:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4871 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4872:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4872 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4873:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4873 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4874:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4874 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5047:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 5047 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4855:9: warning: variable ‘cycleNumber’ set but not used [-Wunused-but-set-variable=] 4855 | int cycleNumber; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5210:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5210 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5211:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5211 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5241:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5241 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5286 | for (i=0; i*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5320:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5320 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5337:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5337 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5367 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5377 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5408:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5408 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5421:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5421 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5437:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5437 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5676:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5676 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5724:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5724 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5727 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5735 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5807 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5837 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5903 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5915 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5931 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5954 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5969 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6009 | for (i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6016 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6035 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6043 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6044 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6045 | for (i=0; i::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 6367 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6368:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6368 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6555:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6555 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6600 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6602:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6602 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6608 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6618:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6618 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6621:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6621 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6632:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6632 | if (k == 1) for (i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6651 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6852:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6852 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6854:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6854 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6859 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6873 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6881 | for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6896 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6689:26: warning: variable ‘n4’ set but not used [-Wunused-but-set-variable=] 6689 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6969:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6969 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7033:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7033 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘int OpenBabel::groupRedraw(OBMol*, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7168:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7168 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7176 | for (int i=0; i&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7218 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7221:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7221 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7242:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7242 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7245:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7245 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4348:16: warning: ‘r1’ may be used uninitialized [-Wmaybe-uninitialized] 4348 | xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; | ~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4235:12: note: ‘r1’ was declared here 4235 | double r1; | ^~ [53/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF src/CMakeFiles/openbabel.dir/residue.cpp.o.d -o src/CMakeFiles/openbabel.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [54/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF src/CMakeFiles/openbabel.dir/ring.cpp.o.d -o src/CMakeFiles/openbabel.dir/ring.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In constructor ‘OpenBabel::OBRingSearch::OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In destructor ‘OpenBabel::OBRingSearch::~OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ [55/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF src/CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘void OpenBabel::OBRotamerList::AddRotamer(std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:410:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 412 | while (angle > 360.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:543:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 545 | while (angle > 360.0) | ^~~~~ [56/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF src/CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [57/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF src/CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o src/CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tokenst.cpp [58/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF src/CMakeFiles/openbabel.dir/rotor.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp: In member function ‘bool OpenBabel::OBRotorList::SetEvalAtoms(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:335:28: warning: ‘void OpenBabel::OBRotor::SetEvalAtoms(OpenBabel::OBBitVec&)’ is deprecated [-Wdeprecated-declarations] 335 | rotor->SetEvalAtoms(eval); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:435:10: note: declared here 435 | void SetEvalAtoms(OBBitVec &bv) { _evalatoms = bv; } | ^~~~~~~~~~~~ [59/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF src/CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o src/CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp: In member function ‘bool OpenBabel::TautomerImpl::IsPropagationValid(OpenBabel::OBMol*, const std::vector&, const std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:407:13: warning: variable ‘numSingleBond’ set but not used [-Wunused-but-set-variable=] 407 | int numSingleBond = 0, numDoubleBond = 0, numUnassigned = 0; | ^~~~~~~~~~~~~ [60/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF src/CMakeFiles/openbabel.dir/transform.cpp.o.d -o src/CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [61/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF src/CMakeFiles/openbabel.dir/typer.cpp.o.d -o src/CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [62/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ [63/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/dlhandler_unix.cpp [64/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF src/CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:189:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:361:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 361 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ [65/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ [66/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [67/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF src/CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:250:12: warning: unused variable ‘score’ [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:352:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable=] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:812:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 812 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:877:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 877 | if (iniche > -1) | ~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1042:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1042 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1057:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1057 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1070:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1070 | if (imax == -1) | ~~~~~^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1087:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1087 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1013:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 1013 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1176 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1185:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1185 | if (iround < imax) | ~~~~~~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1193:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1193 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1218:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1218 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:23: warning: unused variable ‘lowest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:37: warning: unused variable ‘highest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:25: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBConformerSearch::NextGeneration()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBConformerSearch::NextGeneration()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:16: note: ‘generator’ declared here 473 | OBRandomMT generator{}; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘OpenBabel::OBConformerSearch::MakeSelection()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:568:31: warning: ‘highest’ may be used uninitialized [-Wmaybe-uninitialized] 568 | double sum = 0.0, lowest, highest; | ^~~~~~~ [68/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [69/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [70/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:284:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1028:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1028 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1033:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1033 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:99: warning: expression does not compute the number of elements in this array; element type is ‘const float’, not ‘double’ [-Wsizeof-array-div] 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:100: note: add parentheses around ‘sizeof (double)’ to silence this warning 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1241:24: note: array ‘dashpattern’ declared here 1241 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘min_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:14: note: ‘min_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘max_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:21: note: ‘max_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘min_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:14: note: ‘min_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘max_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:21: note: ‘max_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘min_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:14: note: ‘min_z’ was declared here 436 | double min_z, max_z; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘max_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:21: note: ‘max_z’ was declared here 436 | double min_z, max_z; | ^~~~~ [71/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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/usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetranonplanar.cpp [73/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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-isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [75/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/squareplanar.cpp [76/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [77/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetrahedral.cpp [78/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [79/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [80/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cansmidescriptor.cpp [81/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cmpdfilter.cpp [82/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [83/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF src/CMakeFiles/openbabel.dir/math/align.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/align.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [84/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [85/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [86/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [87/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp: In function ‘bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2795:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2951 | return true; | ^~~~~~ [88/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [89/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [90/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ [91/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF src/CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o src/CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:55: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 55 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:56: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 56 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:642:3: warning: multi-line comment [-Wcomment] 642 | // \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::SetAromaticRingBounds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:458:14: warning: variable ‘angle’ set but not used [-Wunused-but-set-variable=] 458 | double angle = 180.0 - (360.0 / size); | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:31: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:16: note: ‘generator’ declared here 1059 | OBRandomMT generator{}; | ^~~~~~~~~ [92/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: warning: ‘MEM[(const struct OBFFVDWCalculationGhemical &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGhemical &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ [93/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:29: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGaff &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGaff::OBFFElectrostaticCalculationGaff(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:72:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1055:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ [94/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addfilename.cpp [95/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addinindex.cpp [96/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addpolarh.cpp [97/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:40: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:58: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:41: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:60: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:42: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:62: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:43: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:64: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:39: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:56: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:39: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:56: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:49: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:76: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:12: note: ‘index’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘first_rj’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:29: note: ‘first_rj’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:44: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_theta’ may be used uninitialized [-Wmaybe-uninitialized] 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rab’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rbc’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ may be used uninitialized [-Wmaybe-uninitialized] 61 | class OBFFTorsionCalculationMMFF94 : public OBFFCalculation4 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: warning: ‘MEM[(const struct OBFFVDWCalculationMMFF94 &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationMMFF94::OBFFVDWCalculationMMFF94(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:78:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3616:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: warning: ‘MEM[(const struct OBFFElectrostaticCalculationMMFF94 &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationMMFF94::OBFFElectrostaticCalculationMMFF94(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:89:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3678:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4336:13: warning: ‘etot’ may be used uninitialized [-Wmaybe-uninitialized] 4336 | delta = (Energy() - etot); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:12: note: ‘etot’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:31: In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4308:15: /usr/include/bits/stdio2.h:68:35: warning: ‘ebond’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:18: note: ‘ebond’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4312:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eangle’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:25: note: ‘eangle’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4320:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eoop’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:33: note: ‘eoop’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4316:15: /usr/include/bits/stdio2.h:68:35: warning: ‘estbn’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:39: note: ‘estbn’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4324:15: /usr/include/bits/stdio2.h:68:35: warning: ‘etor’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:46: note: ‘etor’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4328:15: /usr/include/bits/stdio2.h:68:35: warning: ‘evdw’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:52: note: ‘evdw’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4332:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eeq’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:58: note: ‘eeq’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~ [98/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addnonpolarh.cpp [99/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [100/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp: In member function ‘virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:91:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ [101/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delpolarh.cpp [102/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delnonpolarh.cpp [103/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen2D.cpp [104/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘void OpenBabel::OBFFElectrostaticCalculationUFF::Compute()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:516:49: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 516 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:37: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:54: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: warning: ‘MEM[(const struct OBFFElectrostaticCalculationUFF &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rij’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rjk’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rik’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: warning: ‘MEM[(const struct OBFFTorsionCalculationUFF &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationUFF::OBFFTorsionCalculationUFF(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:53:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1341:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1334:15: warning: ‘torsioncalc.V’ may be used uninitialized [-Wmaybe-uninitialized] 1334 | if (fabs(torsioncalc.V) < 2e-6) // don't bother calcuating this torsion | ~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘torsioncalc.V’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1339:48: warning: ‘torsioncalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 1339 | torsioncalc.cosNPhi0 = cos(torsioncalc.n * DEG_TO_RAD * phi0); /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘torsioncalc.n’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘anglecalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘anglecalc.n’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ [105/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [106/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp: In member function ‘virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:282:10: warning: unused variable ‘done’ [-Wunused-variable] 282 | bool done = true; | ^~~~ [107/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [108/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [109/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/largest.cpp [110/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/loader.cpp [111/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp: In member function ‘virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:95:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 95 | if(!pConv) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:98:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 98 | if(pConv->IsFirstInput()) | ^~ [112/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/phmodel.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/optransform.h:19, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [113/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [114/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/readconformers.cpp [115/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [116/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/xout.cpp [117/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:15: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.h:18, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp: In member function ‘virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [118/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/sort.cpp [119/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp: In member function ‘void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ [120/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp: In member function ‘virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ [121/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [122/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [123/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [124/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [125/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [126/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ [127/538] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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src/CMakeFiles/openbabel.dir/mol.cpp.o src/CMakeFiles/openbabel.dir/obconversion.cpp.o src/CMakeFiles/openbabel.dir/oberror.cpp.o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o src/CMakeFiles/openbabel.dir/obiter.cpp.o src/CMakeFiles/openbabel.dir/obutil.cpp.o src/CMakeFiles/openbabel.dir/op.cpp.o src/CMakeFiles/openbabel.dir/parsmart.cpp.o src/CMakeFiles/openbabel.dir/patty.cpp.o src/CMakeFiles/openbabel.dir/phmodel.cpp.o src/CMakeFiles/openbabel.dir/plugin.cpp.o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o src/CMakeFiles/openbabel.dir/query.cpp.o src/CMakeFiles/openbabel.dir/rand.cpp.o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o src/CMakeFiles/openbabel.dir/residue.cpp.o src/CMakeFiles/openbabel.dir/ring.cpp.o src/CMakeFiles/openbabel.dir/rotamer.cpp.o src/CMakeFiles/openbabel.dir/rotor.cpp.o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o src/CMakeFiles/openbabel.dir/tautomer.cpp.o src/CMakeFiles/openbabel.dir/tokenst.cpp.o src/CMakeFiles/openbabel.dir/transform.cpp.o src/CMakeFiles/openbabel.dir/typer.cpp.o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o src/CMakeFiles/openbabel.dir/confsearch.cpp.o src/CMakeFiles/openbabel.dir/distgeom.cpp.o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o src/CMakeFiles/openbabel.dir/math/align.cpp.o src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lm -ldl /usr/lib64/libz.so && : [128/538] /usr/bin/cmake -E cmake_symlink_library lib64/libopenbabel.so.8.0.0 lib64/libopenbabel.so.8 lib64/libopenbabel.so && : [129/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -python -c++ -doxygen -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel/openbabel-python.cpp -DHAVE_EIGEN3 -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-python.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bitvec.h:59: Warning 560: Unknown Doxygen command: users. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:631: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [130/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [131/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl/openbabel-perl.cpp -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-perl.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [132/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -ruby -c++ -small -O -templatereduce -naturalvar -autorename -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-ruby.i && sed -e '' -e's/void Init_OpenBabel/void Init_openbabel/' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.cpp && /usr/bin/cmake -E remove /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [133/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [134/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [135/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In constructor ‘OpenBabel::OBSmilesParser::OBSmilesParser(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:291:10: warning: ‘OpenBabel::OBSmilesParser::_preserve_aromaticity’ will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:289:9: warning: ‘int OpenBabel::OBSmilesParser::_rxnrole’ [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:669:15: warning: variable ‘atom’ set but not used [-Wunused-but-set-variable=] 669 | OBAtom* atom; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2232:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2232 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2717:10: warning: variable ‘symbol’ set but not used [-Wunused-but-set-variable=] 2717 | char symbol[10]; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2721:10: warning: unused variable ‘normalValence’ [-Wunused-variable] 2721 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2722:10: warning: unused variable ‘writeExplicitHydrogen’ [-Wunused-variable] 2722 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3171:22: warning: unused variable ‘bond_order’ [-Wunused-variable] 3171 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3166:20: warning: unused variable ‘nbr_bond_order’ [-Wunused-variable] 3166 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3318:11: warning: unused variable ‘bo’ [-Wunused-variable] 3318 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3931:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3931 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3937 | for (int i=0; i >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2897 | snprintf(tcount, 10, "%d", hcount); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:23: In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2889 | snprintf(tcount, 10, "%d", i); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:32: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:31: note: directive argument in the range [-2147483648, 99] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 12 bytes into a destination of size 8 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [136/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:794:10: warning: unused variable ‘ch’ [-Wunused-variable] 794 | char ch = ifs.peek(); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:86:15: warning: ‘bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)’ defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ [137/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/getinchi.cpp [138/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [139/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 51 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 64 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 77 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 90 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 103 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 116 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 119 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 121 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 134 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 137 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 139 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 152 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 155 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 170 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 173 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 188 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 191 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 193 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 209 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 226 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 240 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 243 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 245 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 257 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 260 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 262 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 274 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 277 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 279 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 291 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 294 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 296 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 298 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 310 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 313 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 315 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 317 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 329 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 332 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 334 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 336 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 348 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 351 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 353 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 355 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 367 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 370 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 372 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 374 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 385 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 388 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 390 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 392 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 394 | if (val <= 3) return 3; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:776:20: warning: variable ‘count’ set but not used [-Wunused-but-set-variable=] 776 | unsigned int count = 0; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1502:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 1502 | bool chiralWatch=false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:22: note: directive argument in the range [-2147483648, 2147483547] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/iomanip:47, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:27: In function ‘snprintf’, inlined from ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map, std::allocator > >*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a1_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:31: note: ‘a1_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a2_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:42: note: ‘a2_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ [140/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:612:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 612 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 681 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:17: In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:70: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 701 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:29: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32761 [-Wstringop-truncation] 299 | strncpy(integerBuffer, buffer+columnAsSpecifiedInPDB-1, 5); | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32756 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32751 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32746 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32741 [-Wstringop-truncation] [141/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 118 | for (int i=0; iGetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:200:54: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 200 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [145/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF src/formats/CMakeFiles/molreport.dir/molreport.cpp.o.d -o src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molreport.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [146/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnulformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nulformat.cpp [147/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/commandpainter.cpp [148/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 113 | ostream& ofs = *pConv->GetOutStream(); | ^~~ [149/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MNAformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MNAformat.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MNAformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [150/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF src/formats/CMakeFiles/textformat.dir/textformat.cpp.o.d -o src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/textformat.cpp [151/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [152/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:173:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable=] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:807:17: warning: unused variable ‘title’ [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ [153/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/titleformat.cpp [154/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:248:18: warning: unused variable ‘n’ [-Wunused-variable] 248 | unsigned int n=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:273:8: warning: unused variable ‘ret’ [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ [155/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pngformat.cpp [156/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ [157/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:99:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable=] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ [158/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [159/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [160/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcastepformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘pressure’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:12: note: ‘pressure’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘volume’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:22: note: ‘volume’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:16: In function ‘snprintf’, inlined from ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:211:17: /usr/include/bits/stdio2.h:68:35: warning: ‘enthalpy’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:30: note: ‘enthalpy’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ [161/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [162/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [163/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ [164/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:147:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable=] 147 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:311:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 311 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:331:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 331 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [165/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [166/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ [167/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:432:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 432 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:479:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 479 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausscubeformat.cpp:114:17: warning: unused variable ‘title’ [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ [168/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp: In member function ‘virtual bool OpenBabel::GaussianZMatrixInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gausszmatformat.cpp:149:34: warning: unused variable ‘atom’ [-Wunused-variable] 149 | FOR_ATOMS_OF_MOL(atom, mol) | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:417:45: note: in definition of macro ‘FOR_ATOMS_OF_MOL’ 417 | #define FOR_ATOMS_OF_MOL(a,m) for (auto a : impl::MolGetAtoms(m)) | ^ [169/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgulpformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp: In member function ‘OpenBabel::GULPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:360:14: warning: ‘enthalpy_eV’ may be used uninitialized [-Wmaybe-uninitialized] 360 | double en_kcal_per_mole = enthalpy_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:96:12: note: ‘enthalpy_eV’ was declared here 96 | double enthalpy_eV, pv_eV; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:361:14: warning: ‘pv_eV’ may be used uninitialized [-Wmaybe-uninitialized] 361 | double pv_kcal_per_mole = pv_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gulpformat.cpp:96:25: note: ‘pv_eV’ was declared here 96 | double enthalpy_eV, pv_eV; | ^~~~~ [170/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dhinformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/hinformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/hinformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [171/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:589:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 589 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:233:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable=] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:521:11: warning: ‘lowFreqModesBegin’ may be used uninitialized [-Wmaybe-uninitialized] 521 | if (numFreq < lowFreqModesBegin) // imaginary frequency | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:244:9: note: ‘lowFreqModesBegin’ was declared here 244 | int lowFreqModesBegin; // the number of the first low frequency mode | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:523:11: warning: ‘lowFreqModesEnd’ may be used uninitialized [-Wmaybe-uninitialized] 523 | if (numFreq > lowFreqModesEnd) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:245:9: note: ‘lowFreqModesEnd’ was declared here 245 | int lowFreqModesEnd; // the number of the last low frequency mode | ^~~~~~~~~~~~~~~ [172/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Djaguarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/jaguarformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/jaguarformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [173/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolproformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molproformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/molproformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [174/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for(i=start+1; (i=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:306:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 306 | else if (vs[0][0] == '1') | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:423:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 423 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:571:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 571 | if (energies.size() != molecule->NumConformers()) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:932:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 932 | if (atoi(buffer) != natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:111:20: warning: ‘OpenBabel::BETA_ORBITAL_PATTERN’ defined but not used [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadCoordinates(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:202:13: warning: ‘coordinates’ may be used uninitialized [-Wmaybe-uninitialized] 202 | double* coordinates; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:957:21: warning: ‘nbeads’ may be used uninitialized [-Wmaybe-uninitialized] 957 | if (bead_number != nbeads) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:900:18: note: ‘nbeads’ was declared here 900 | unsigned int nbeads; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp: In member function ‘OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::basic_istream >*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:772:5: warning: ‘energy’ may be used uninitialized [-Wmaybe-uninitialized] 772 | if (energy == 0) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nwchemformat.cpp:750:12: note: ‘energy’ was declared here 750 | double energy; | ^~~~~~ [179/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/turbomoleformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/turbomoleformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [180/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsiestaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp: In member function ‘virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:92:10: warning: variable ‘coordsAreAngstrom’ set but not used [-Wunused-but-set-variable=] 92 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:98:12: warning: variable ‘size’ set but not used [-Wunused-but-set-variable=] 98 | size_t size; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/siestaformat.cpp:102:30: warning: unused variable ‘numSpecies’ [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ [181/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxsfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/xsfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/xsfformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [182/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dzindoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/zindoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/zindoformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [183/538] /usr/bin/g++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/APIInterface.cpp [184/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/CSRformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/CSRformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [185/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp: In member function ‘OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/PQSformat.cpp:234:24: warning: ‘__strncat_chk’ output may be truncated copying between 0 and 255 bytes from a string of length 255 [-Wstringop-truncation] 234 | strncat(full_coord_path, coord_file, | ^ [186/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dvaspformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:461:17: warning: unused variable ‘freqnum’ [-Wunused-variable] 461 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:678:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 678 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp: In member function ‘OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:420:21: warning: ‘fermi’ may be used uninitialized [-Wmaybe-uninitialized] 420 | dos->SetData(fermi, energies, densities, integration); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:402:14: note: ‘fermi’ was declared here 402 | double fermi; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:566:14: warning: ‘enthalpy_eV’ may be used uninitialized [-Wmaybe-uninitialized] 566 | double en_kcal_per_mole = enthalpy_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:173:12: note: ‘enthalpy_eV’ was declared here 173 | double enthalpy_eV, pv_eV; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:567:14: warning: ‘pv_eV’ may be used uninitialized [-Wmaybe-uninitialized] 567 | double pv_kcal_per_mole = pv_eV * EV_TO_KCAL_PER_MOL; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/vaspformat.cpp:173:25: note: ‘pv_eV’ was declared here 173 | double enthalpy_eV, pv_eV; | ^~~~~ [187/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dalchemyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/alchemyformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/alchemyformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [188/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp: In member function ‘OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:166:12: warning: ‘atoms’ may be used uninitialized [-Wmaybe-uninitialized] 166 | } else if ( pmol->NumAtoms() != atoms ) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:95:18: note: ‘atoms’ was declared here 95 | unsigned int atoms, bonds, tmp; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:162:5: warning: ‘bonds’ may be used uninitialized [-Wmaybe-uninitialized] 162 | if ( pmol->NumBonds() != bonds ) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acrformat.cpp:95:25: note: ‘bonds’ was declared here 95 | unsigned int atoms, bonds, tmp; | ^~~~~ [189/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Damberformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/amberformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/amberformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [190/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbalstformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/balstformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/balstformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [191/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbgfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/bgfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/bgfformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [192/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessukformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:813:26: warning: catching polymorphic type ‘class std::regex_error’ by value [-Wcatch-value=] 813 | } catch (regex_error ex) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:907:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable=] 907 | bool ok=false; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessukformat.cpp:1222:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable=] 1222 | bool ok; | ^~ [193/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dboxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/boxformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/boxformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [194/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dorcaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:385:33: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 385 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:400:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:412:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 412 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:131:12: warning: unused variable ‘energy’ [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:138:9: warning: variable ‘nModeAll’ set but not used [-Wunused-but-set-variable=] 138 | int nModeAll = 0; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp: In member function ‘std::string OpenBabel::OrcaOutputFormat::checkColumns(std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/orcaformat.cpp:759:26: warning: catching polymorphic type ‘class std::regex_error’ by value [-Wcatch-value=] 759 | } catch (regex_error ex) { | ^~ [195/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:260:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (depth > maxdepth) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:264:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 264 | for (i=0; i<=MAXFRAGS; i++) strngs[i]=(char *)calloc(MAXFRAGS,sizeof(char)); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:289:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 289 | if (jflag) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:293:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 293 | nt = 1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1287:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1287 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1417:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1417 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1418:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:1431:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1431 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp: In member function ‘OpenBabel::MCDLFormat::solve(int, int (*) [4], int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:247:32: warning: ‘jump’ may be used uninitialized [-Wmaybe-uninitialized] 247 | int numdups = 0, dupfrag, jump; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:404:17: warning: ‘dupfrag’ may be used uninitialized [-Wmaybe-uninitialized] 404 | if (ix[i] > dupfrag) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/MCDLformat.cpp:247:23: note: ‘dupfrag’ was declared here 247 | int numdups = 0, dupfrag, jump; | ^~~~~~~ [196/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacaoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacaoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacaoformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [197/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacheformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacheformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cacheformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [198/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcccformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cccformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cccformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [199/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF src/formats/CMakeFiles/carformat.dir/carformat.cpp.o.d -o src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/carformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/carformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [200/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchem3dformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chem3dformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chem3dformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [201/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawct_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawct.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawct.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [202/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemtoolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemtoolformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [203/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:339:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 339 | for(unsigned i=0;iNumAtoms();++idx) | ~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:478:27: warning: variable ‘hasElement’ set but not used [-Wunused-but-set-variable=] 478 | bool isAlias=false, hasElement=false; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:622:17: warning: ‘bgnIdx’ may be used uninitialized [-Wmaybe-uninitialized] 622 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:581:11: note: ‘bgnIdx’ was declared here 581 | int bgnIdx, endIdx ; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:622:28: warning: ‘endIdx’ may be used uninitialized [-Wmaybe-uninitialized] 622 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/chemdrawcdx.cpp:581:19: note: ‘endIdx’ was declared here 581 | int bgnIdx, endIdx ; | ^~~~~~ [204/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcofformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp: In member function ‘virtual bool OpenBabel::COFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:137:22: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 137 | if(vs.size() < offset+9) | ~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 184 | for(int j=0 ; j< natoms ; j++) | ~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp: In member function ‘virtual bool OpenBabel::COFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/cofformat.cpp:372:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 372 | for( int j=0; j