Warning: Permanently added '3.87.200.236' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6995512-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.70 PID: 7355 Logging PID: 7356 Task: {'appstream': False, 'background': False, 'build_id': 6995512, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ebc0ac8bcac74aeaba74679a354cd83182a56444', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/music/urllib3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-3', 'project_dirname': 'urllib3', 'project_name': 'urllib3', 'project_owner': 'music', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/music/urllib3/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'music/urllib3--music', 'source_json': {}, 'source_type': None, 'submitter': 'music', 'tags': [], 'task_id': '6995512-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/music/urllib3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/music/urllib3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy'... Running: git checkout ebc0ac8bcac74aeaba74679a354cd83182a56444 -- cmd: ['git', 'checkout', 'ebc0ac8bcac74aeaba74679a354cd83182a56444', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy rc: 0 stdout: stderr: Note: switching to 'ebc0ac8bcac74aeaba74679a354cd83182a56444'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ebc0ac8 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/music/urllib3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz /usr/bin/tail: Dload Upload Total Spent Left Speed /var/lib/copr-rpmbuild/main.log: file truncated 100 25.9M 100 25.9M 0 0 277M 0 --:--:-- --:--:-- --:--:-- 279M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1707280564.371572 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1707280564.371572 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy/ProDy.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1707280564.371572/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1707280564.371572/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/8267e1989b72e3e396679505f133317e9e8858878d00a47dab2e7750d6d0a236/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/8267e1989b72e3e396679505f133317e9e8858878d00a47dab2e7750d6d0a236/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 284 kB/s | 11 kB 00:00 fedora 51 MB/s | 72 MB 00:01 Dependencies resolved. ================================================================================ Package Architecture Version Repository Size ================================================================================ Installing: dnf5 aarch64 5.1.11-3.fc40 fedora 535 k dnf5-plugins aarch64 5.1.11-3.fc40 fedora 314 k Installing dependencies: fmt aarch64 10.2.1-3.fc40 fedora 121 k libdnf5 aarch64 5.1.11-3.fc40 fedora 871 k libdnf5-cli aarch64 5.1.11-3.fc40 fedora 211 k sdbus-cpp aarch64 1.4.0-2.fc40 fedora 101 k Transaction Summary ================================================================================ Install 6 Packages Total download size: 2.1 M Installed size: 6.8 M Downloading Packages: (1/6): fmt-10.2.1-3.fc40.aarch64.rpm 6.4 MB/s | 121 kB 00:00 (2/6): dnf5-5.1.11-3.fc40.aarch64.rpm 25 MB/s | 535 kB 00:00 (3/6): libdnf5-5.1.11-3.fc40.aarch64.rpm 197 MB/s | 871 kB 00:00 (4/6): libdnf5-cli-5.1.11-3.fc40.aarch64.rpm 49 MB/s | 211 kB 00:00 (5/6): dnf5-plugins-5.1.11-3.fc40.aarch64.rpm 12 MB/s | 314 kB 00:00 (6/6): sdbus-cpp-1.4.0-2.fc40.aarch64.rpm 43 MB/s | 101 kB 00:00 -------------------------------------------------------------------------------- Total 12 MB/s | 2.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-3.fc40.aarch64 1/6 Installing : libdnf5-5.1.11-3.fc40.aarch64 2/6 Installing : libdnf5-cli-5.1.11-3.fc40.aarch64 3/6 Installing : dnf5-5.1.11-3.fc40.aarch64 4/6 Installing : sdbus-cpp-1.4.0-2.fc40.aarch64 5/6 Installing : dnf5-plugins-5.1.11-3.fc40.aarch64 6/6 Running scriptlet: dnf5-plugins-5.1.11-3.fc40.aarch64 6/6 Installed: dnf5-5.1.11-3.fc40.aarch64 dnf5-plugins-5.1.11-3.fc40.aarch64 fmt-10.2.1-3.fc40.aarch64 libdnf5-5.1.11-3.fc40.aarch64 libdnf5-cli-5.1.11-3.fc40.aarch64 sdbus-cpp-1.4.0-2.fc40.aarch64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1707280564.371572/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-4.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.11-3.fc40.aarch64 dnf5-plugins-5.1.11-3.fc40.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 342.7 KiB/s | 11.0 KiB | 00m00s Copr repository 100% | 56.2 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 179.1 KiB/s | 8.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.26-2.fc40 fedora 8.3 MiB bzip2 aarch64 1.0.8-18.fc40 fedora 427.5 KiB coreutils aarch64 9.4-6.fc40 fedora 20.8 MiB cpio aarch64 2.15-1.fc40 fedora 1.2 MiB diffutils aarch64 3.10-5.fc40 fedora 2.1 MiB fedora-release-common noarch 40-0.29 fedora 19.1 KiB findutils aarch64 1:4.9.0-8.fc40 fedora 1.7 MiB gawk aarch64 5.3.0-3.fc40 fedora 4.2 MiB glibc-minimal-langpack aarch64 2.38.9000-39.fc40 fedora 0.0 B grep aarch64 3.11-7.fc40 fedora 1.1 MiB gzip aarch64 1.13-1.fc40 fedora 488.8 KiB info aarch64 7.1-2.fc40 fedora 613.5 KiB patch aarch64 2.7.6-24.fc40 fedora 390.5 KiB redhat-rpm-config noarch 281-1.fc40 fedora 183.2 KiB rpm-build aarch64 4.19.1-4.fc40 fedora 1.2 MiB sed aarch64 4.9-1.fc40 fedora 1.0 MiB shadow-utils aarch64 2:4.14.0-4.fc40 fedora 7.1 MiB tar aarch64 2:1.35-3.fc40 fedora 3.1 MiB unzip aarch64 6.0-63.fc40 fedora 726.4 KiB util-linux aarch64 2.40-0.1.fc40 fedora 17.4 MiB which aarch64 2.21-41.fc40 fedora 248.1 KiB xz aarch64 5.4.6-1.fc40 fedora 2.3 MiB Installing dependencies: alternatives aarch64 1.26-3.fc40 fedora 218.2 KiB ansible-srpm-macros noarch 1-14.fc40 fedora 35.7 KiB audit-libs aarch64 4.0-8.fc40 fedora 547.2 KiB authselect aarch64 1.5.0-3.fc40 fedora 312.4 KiB authselect-libs aarch64 1.5.0-3.fc40 fedora 1.1 MiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils aarch64 2.41-32.fc40 fedora 32.8 MiB binutils-gold aarch64 2.41-32.fc40 fedora 3.1 MiB bzip2-libs aarch64 1.0.8-18.fc40 fedora 200.7 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 fedora 2.3 MiB coreutils-common aarch64 9.4-6.fc40 fedora 11.4 MiB cracklib aarch64 2.9.11-5.fc40 fedora 934.6 KiB crypto-policies noarch 20240201-1.git9f501f3.fc40 fedora 149.3 KiB curl aarch64 8.6.0-3.fc40 fedora 866.6 KiB cyrus-sasl-lib aarch64 2.1.28-19.fc40 fedora 3.1 MiB debugedit aarch64 5.0-14.fc40 fedora 498.8 KiB dwz aarch64 0.15-6.fc40 fedora 386.7 KiB ed aarch64 1.20-2.fc40 fedora 282.3 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils aarch64 0.190-6.fc40 fedora 5.0 MiB elfutils-debuginfod-client aarch64 0.190-6.fc40 fedora 396.7 KiB elfutils-default-yama-scope noarch 0.190-6.fc40 fedora 1.8 KiB elfutils-libelf aarch64 0.190-6.fc40 fedora 1.1 MiB elfutils-libs aarch64 0.190-6.fc40 fedora 1.0 MiB fedora-gpg-keys noarch 40-0.2 fedora 123.2 KiB fedora-release noarch 40-0.29 fedora 0.0 B fedora-release-identity-basic noarch 40-0.29 fedora 694.0 B fedora-repos noarch 40-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 40-0.2 fedora 2.2 KiB file aarch64 5.45-3.fc40 fedora 267.4 KiB file-libs aarch64 5.45-3.fc40 fedora 10.0 MiB filesystem aarch64 3.18-8.fc40 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.2.0-3.fc40 fedora 37.4 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal aarch64 14.1-8.fc40 fedora 12.1 MiB gdbm aarch64 1:1.23-6.fc40 fedora 928.2 KiB gdbm-libs aarch64 1:1.23-6.fc40 fedora 425.8 KiB ghc-srpm-macros noarch 1.6.1-5.fc40 fedora 369.0 B glibc aarch64 2.38.9000-39.fc40 fedora 9.7 MiB glibc-common aarch64 2.38.9000-39.fc40 fedora 2.6 MiB glibc-gconv-extra aarch64 2.38.9000-39.fc40 fedora 49.0 MiB gmp aarch64 1:6.2.1-8.fc40 fedora 721.2 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.3.1-3.fc40 fedora 60.6 KiB jansson aarch64 2.13.1-9.fc40 fedora 220.4 KiB kernel-srpm-macros noarch 1.0-22.fc40 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-3.fc40 fedora 226.3 KiB krb5-libs aarch64 1.21.2-5.fc40 fedora 3.4 MiB libacl aarch64 2.3.2-1.fc40 fedora 196.0 KiB libarchive aarch64 3.7.2-3.fc40 fedora 1.0 MiB libattr aarch64 2.5.2-3.fc40 fedora 196.5 KiB libblkid aarch64 2.40-0.1.fc40 fedora 392.9 KiB libbrotli aarch64 1.1.0-3.fc40 fedora 1.1 MiB libcap aarch64 2.69-3.fc40 fedora 1.4 MiB libcap-ng aarch64 0.8.4-4.fc40 fedora 417.0 KiB libcom_err aarch64 1.47.0-4.fc40 fedora 239.2 KiB libcurl aarch64 8.6.0-3.fc40 fedora 856.8 KiB libeconf aarch64 0.5.2-3.fc40 fedora 204.0 KiB libevent aarch64 2.1.12-11.fc40 fedora 1.5 MiB libfdisk aarch64 2.40-0.1.fc40 fedora 483.2 KiB libffi aarch64 3.4.4-7.fc40 fedora 281.4 KiB libgcc aarch64 14.0.1-0.4.fc40 fedora 350.1 KiB libgomp aarch64 14.0.1-0.4.fc40 fedora 565.5 KiB libidn2 aarch64 2.3.7-1.fc40 fedora 457.1 KiB libmount aarch64 2.40-0.1.fc40 fedora 484.2 KiB libnghttp2 aarch64 1.59.0-2.fc40 fedora 262.1 KiB libnsl2 aarch64 2.0.1-1.fc40 fedora 221.9 KiB libpkgconf aarch64 1.9.5-4.fc40 fedora 198.0 KiB libpsl aarch64 0.21.5-3.fc40 fedora 196.5 KiB libpwquality aarch64 1.4.5-9.fc40 fedora 1.1 MiB libselinux aarch64 3.6-4.fc40 fedora 265.1 KiB libsemanage aarch64 3.6-3.fc40 fedora 361.4 KiB libsepol aarch64 3.6-3.fc40 fedora 874.0 KiB libsmartcols aarch64 2.40-0.1.fc40 fedora 288.8 KiB libssh aarch64 0.10.6-4.fc40 fedora 581.2 KiB libssh-config noarch 0.10.6-4.fc40 fedora 277.0 B libstdc++ aarch64 14.0.1-0.4.fc40 fedora 2.8 MiB libtasn1 aarch64 4.19.0-6.fc40 fedora 283.7 KiB libtirpc aarch64 1.3.4-1.rc2.fc40.2 fedora 274.6 KiB libunistring aarch64 1.1-7.fc40 fedora 1.9 MiB libutempter aarch64 1.2.1-13.fc40 fedora 417.6 KiB libuuid aarch64 2.40-0.1.fc40 fedora 197.6 KiB libverto aarch64 0.3.2-8.fc40 fedora 197.4 KiB libxcrypt aarch64 4.4.36-5.fc40 fedora 398.9 KiB libxml2 aarch64 2.12.5-1.fc40 fedora 2.2 MiB libzstd aarch64 1.5.5-5.fc40 fedora 795.8 KiB lua-libs aarch64 5.4.6-5.fc40 fedora 393.0 KiB lua-srpm-macros noarch 1-11.fc40 fedora 1.3 KiB lz4-libs aarch64 1.9.4-6.fc40 fedora 261.4 KiB mpfr aarch64 4.2.1-3.fc40 fedora 818.7 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs aarch64 6.4-12.20240127.fc40 fedora 2.2 MiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-16.fc40 fedora 104.0 B openldap aarch64 2.6.6-1.fc39 fedora 1.0 MiB openssl-libs aarch64 1:3.1.4-4.fc40 fedora 7.2 MiB p11-kit aarch64 0.25.3-4.fc40 fedora 2.8 MiB p11-kit-trust aarch64 0.25.3-4.fc40 fedora 655.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam aarch64 1.6.0-1.fc40 fedora 11.0 MiB pam-libs aarch64 1.6.0-1.fc40 fedora 607.0 KiB pcre2 aarch64 10.42-2.fc40.2 fedora 905.6 KiB pcre2-syntax noarch 10.42-2.fc40.2 fedora 235.1 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf aarch64 1.9.5-4.fc40 fedora 235.7 KiB pkgconf-m4 noarch 1.9.5-4.fc40 fedora 13.9 KiB pkgconf-pkg-config aarch64 1.9.5-4.fc40 fedora 990.0 B popt aarch64 1.19-6.fc40 fedora 272.8 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 fedora 1.5 KiB python-srpm-macros noarch 3.12-7.fc40 fedora 50.1 KiB qt5-srpm-macros noarch 5.15.12-3.fc40 fedora 492.0 B qt6-srpm-macros noarch 6.6.1-5.fc40 fedora 456.0 B readline aarch64 8.2-8.fc40 fedora 689.1 KiB rpm aarch64 4.19.1-4.fc40 fedora 4.0 MiB rpm-build-libs aarch64 4.19.1-4.fc40 fedora 262.4 KiB rpm-libs aarch64 4.19.1-4.fc40 fedora 861.7 KiB rpm-sequoia aarch64 1.6.0-2.fc40 fedora 2.2 MiB rust-srpm-macros noarch 25.2-4.fc40 fedora 5.1 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs aarch64 3.45.1-2.fc40 fedora 1.5 MiB systemd-libs aarch64 255.3-1.fc40 fedora 2.5 MiB util-linux-core aarch64 2.40-0.1.fc40 fedora 6.1 MiB xxhash-libs aarch64 0.8.2-2.fc40 fedora 212.2 KiB xz-libs aarch64 5.4.6-1.fc40 fedora 265.6 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip aarch64 3.0-40.fc40 fedora 1.1 MiB zlib-ng-compat aarch64 2.1.6-2.fc40 fedora 261.7 KiB zstd aarch64 1.5.5-5.fc40 fedora 1.6 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 152 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation 305 MiB will be used (install 305 MiB, remove 0 B). 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Importing PGP key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary The key was successfully imported. Importing PGP key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F23996F23218640CB44CBE75CF5AC418B8E74C From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary The key was successfully imported. 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KiB | 00m00s [148/154] Installing python-srpm-macros 100% | 50.1 MiB/s | 51.3 KiB | 00m00s [149/154] Installing redhat-rpm-config- 100% | 61.7 MiB/s | 189.6 KiB | 00m00s [150/154] Installing rpm-build-0:4.19.1 100% | 301.0 MiB/s | 1.2 MiB | 00m00s [151/154] Installing pyproject-srpm-mac 100% | 1.0 MiB/s | 2.1 KiB | 00m00s [152/154] Installing util-linux-0:2.40- 100% | 398.0 MiB/s | 17.5 MiB | 00m00s [153/154] Installing which-0:2.21-41.fc 100% | 81.5 MiB/s | 250.3 KiB | 00m00s [154/154] Installing info-0:7.1-2.fc40. 100% | 450.1 KiB/s | 613.9 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.aarch64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.aarch64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.aarch64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.aarch64 >>> Running post-transaction scriptlet: rpm-0:4.19.1-4.fc40.aarch64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1-4.fc40.aarch64 >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.aarch64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.aarch64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.aarch64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.aarch64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.aarch64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0-8.fc40.aarch64 authselect-1.5.0-3.fc40.aarch64 authselect-libs-1.5.0-3.fc40.aarch64 basesystem-11-20.fc40.noarch bash-5.2.26-2.fc40.aarch64 binutils-2.41-32.fc40.aarch64 binutils-gold-2.41-32.fc40.aarch64 bzip2-1.0.8-18.fc40.aarch64 bzip2-libs-1.0.8-18.fc40.aarch64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.4-6.fc40.aarch64 coreutils-common-9.4-6.fc40.aarch64 cpio-2.15-1.fc40.aarch64 cracklib-2.9.11-5.fc40.aarch64 crypto-policies-20240201-1.git9f501f3.fc40.noarch curl-8.6.0-3.fc40.aarch64 cyrus-sasl-lib-2.1.28-19.fc40.aarch64 debugedit-5.0-14.fc40.aarch64 diffutils-3.10-5.fc40.aarch64 dwz-0.15-6.fc40.aarch64 ed-1.20-2.fc40.aarch64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.190-6.fc40.aarch64 elfutils-debuginfod-client-0.190-6.fc40.aarch64 elfutils-default-yama-scope-0.190-6.fc40.noarch elfutils-libelf-0.190-6.fc40.aarch64 elfutils-libs-0.190-6.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-3.fc40.aarch64 file-libs-5.45-3.fc40.aarch64 filesystem-3.18-8.fc40.aarch64 findutils-4.9.0-8.fc40.aarch64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.2.0-3.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.aarch64 gdb-minimal-14.1-8.fc40.aarch64 gdbm-1.23-6.fc40.aarch64 gdbm-libs-1.23-6.fc40.aarch64 ghc-srpm-macros-1.6.1-5.fc40.noarch glibc-2.38.9000-39.fc40.aarch64 glibc-common-2.38.9000-39.fc40.aarch64 glibc-gconv-extra-2.38.9000-39.fc40.aarch64 glibc-minimal-langpack-2.38.9000-39.fc40.aarch64 gmp-6.2.1-8.fc40.aarch64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.3.1-3.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-7.fc40.aarch64 gzip-1.13-1.fc40.aarch64 info-7.1-2.fc40.aarch64 jansson-2.13.1-9.fc40.aarch64 kernel-srpm-macros-1.0-22.fc40.noarch keyutils-libs-1.6.3-3.fc40.aarch64 krb5-libs-1.21.2-5.fc40.aarch64 libacl-2.3.2-1.fc40.aarch64 libarchive-3.7.2-3.fc40.aarch64 libattr-2.5.2-3.fc40.aarch64 libblkid-2.40-0.1.fc40.aarch64 libbrotli-1.1.0-3.fc40.aarch64 libcap-2.69-3.fc40.aarch64 libcap-ng-0.8.4-4.fc40.aarch64 libcom_err-1.47.0-4.fc40.aarch64 libcurl-8.6.0-3.fc40.aarch64 libeconf-0.5.2-3.fc40.aarch64 libevent-2.1.12-11.fc40.aarch64 libfdisk-2.40-0.1.fc40.aarch64 libffi-3.4.4-7.fc40.aarch64 libgcc-14.0.1-0.4.fc40.aarch64 libgomp-14.0.1-0.4.fc40.aarch64 libidn2-2.3.7-1.fc40.aarch64 libmount-2.40-0.1.fc40.aarch64 libnghttp2-1.59.0-2.fc40.aarch64 libnsl2-2.0.1-1.fc40.aarch64 libpkgconf-1.9.5-4.fc40.aarch64 libpsl-0.21.5-3.fc40.aarch64 libpwquality-1.4.5-9.fc40.aarch64 libselinux-3.6-4.fc40.aarch64 libsemanage-3.6-3.fc40.aarch64 libsepol-3.6-3.fc40.aarch64 libsmartcols-2.40-0.1.fc40.aarch64 libssh-0.10.6-4.fc40.aarch64 libssh-config-0.10.6-4.fc40.noarch libstdc++-14.0.1-0.4.fc40.aarch64 libtasn1-4.19.0-6.fc40.aarch64 libtirpc-1.3.4-1.rc2.fc40.2.aarch64 libunistring-1.1-7.fc40.aarch64 libutempter-1.2.1-13.fc40.aarch64 libuuid-2.40-0.1.fc40.aarch64 libverto-0.3.2-8.fc40.aarch64 libxcrypt-4.4.36-5.fc40.aarch64 libxml2-2.12.5-1.fc40.aarch64 libzstd-1.5.5-5.fc40.aarch64 lua-libs-5.4.6-5.fc40.aarch64 lua-srpm-macros-1-11.fc40.noarch lz4-libs-1.9.4-6.fc40.aarch64 mpfr-4.2.1-3.fc40.aarch64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.aarch64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.4-4.fc40.aarch64 p11-kit-0.25.3-4.fc40.aarch64 p11-kit-trust-0.25.3-4.fc40.aarch64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.0-1.fc40.aarch64 pam-libs-1.6.0-1.fc40.aarch64 patch-2.7.6-24.fc40.aarch64 pcre2-10.42-2.fc40.2.aarch64 pcre2-syntax-10.42-2.fc40.2.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-1.9.5-4.fc40.aarch64 pkgconf-m4-1.9.5-4.fc40.noarch pkgconf-pkg-config-1.9.5-4.fc40.aarch64 popt-1.19-6.fc40.aarch64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-7.fc40.noarch qt5-srpm-macros-5.15.12-3.fc40.noarch qt6-srpm-macros-6.6.1-5.fc40.noarch readline-8.2-8.fc40.aarch64 redhat-rpm-config-281-1.fc40.noarch rpm-4.19.1-4.fc40.aarch64 rpm-build-4.19.1-4.fc40.aarch64 rpm-build-libs-4.19.1-4.fc40.aarch64 rpm-libs-4.19.1-4.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 rust-srpm-macros-25.2-4.fc40.noarch sed-4.9-1.fc40.aarch64 setup-2.14.5-2.fc40.noarch shadow-utils-4.14.0-4.fc40.aarch64 sqlite-libs-3.45.1-2.fc40.aarch64 systemd-libs-255.3-1.fc40.aarch64 tar-1.35-3.fc40.aarch64 unzip-6.0-63.fc40.aarch64 util-linux-2.40-0.1.fc40.aarch64 util-linux-core-2.40-0.1.fc40.aarch64 which-2.21-41.fc40.aarch64 xxhash-libs-0.8.2-2.fc40.aarch64 xz-5.4.6-1.fc40.aarch64 xz-libs-5.4.6-1.fc40.aarch64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.aarch64 zlib-ng-compat-2.1.6-2.fc40.aarch64 zstd-1.5.5-5.fc40.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1707280564.371572/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ua6dk5hq/ProDy/ProDy.spec) Config(child) 0 minutes 36 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-3.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1707280564.371572/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1707280564.371572/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1707280564.371572/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-4.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.11-3.fc40.aarch64 dnf5-plugins-5.1.11-3.fc40.aarch64 Finish: chroot init Start: build phase for ProDy-2.4.1-3.fc40.src.rpm Start: build setup for ProDy-2.4.1-3.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-3.fc40.src.rpm Updating and loading repositories: fedora 100% | 119.2 KiB/s | 11.0 KiB | 00m00s Copr repository 100% | 89.3 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 260.3 KiB/s | 9.4 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc aarch64 14.0.1-0.4.fc40 fedora 93.1 MiB gcc-c++ aarch64 14.0.1-0.4.fc40 fedora 35.0 MiB python3-biopython aarch64 1.83-3.fc40 fedora 30.5 MiB python3-devel aarch64 3.12.1-4.fc40 fedora 1.2 MiB python3-matplotlib aarch64 3.8.2-4.fc40 fedora 21.1 MiB python3-nose noarch 1.3.7-45.fc40 fedora 1.2 MiB python3-numpy aarch64 1:1.26.2-4.fc40 fedora 41.6 MiB python3-scipy aarch64 1.11.3-6.fc40 fedora 72.1 MiB python3-setuptools noarch 68.2.2-3.fc40 fedora 7.1 MiB python3-urllib3 noarch 2.2.0-2.fc40 copr_base 950.4 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-12.fc40 fedora 192.7 KiB annobin-docs noarch 12.38-1.fc40 fedora 95.6 KiB annobin-plugin-gcc aarch64 12.38-1.fc40 fedora 1.1 MiB cairo aarch64 1.18.0-3.fc40 fedora 2.0 MiB cpp aarch64 14.0.1-0.4.fc40 fedora 31.7 MiB default-fonts-core-sans noarch 4.0-11.fc40 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-23.fc40 fedora 5.5 MiB expat aarch64 2.5.0-5.fc40 fedora 526.7 KiB flex aarch64 2.6.4-16.fc40 fedora 945.3 KiB flexiblas aarch64 3.4.1-3.fc40 fedora 46.7 KiB flexiblas-netlib aarch64 3.4.1-3.fc40 fedora 9.5 MiB flexiblas-openblas-openmp aarch64 3.4.1-3.fc40 fedora 195.3 KiB fontconfig aarch64 2.15.0-3.fc40 fedora 2.4 MiB fonts-filesystem noarch 1:2.0.5-14.fc40 fedora 0.0 B freetype aarch64 2.13.2-4.fc40 fedora 942.9 KiB fribidi aarch64 1.0.13-4.fc40 fedora 673.1 KiB gc aarch64 8.2.2-6.fc40 fedora 850.3 KiB gcc-plugin-annobin aarch64 14.0.1-0.4.fc40 fedora 197.0 KiB glib2 aarch64 2.79.1-1.fc40 fedora 16.3 MiB glibc-devel aarch64 2.38.9000-39.fc40 fedora 2.2 MiB gnutls aarch64 3.8.3-2.fc40 fedora 3.4 MiB google-noto-fonts-common noarch 20240101-1.fc40 fedora 17.4 KiB google-noto-sans-vf-fonts noarch 20240101-1.fc40 fedora 1.2 MiB graphite2 aarch64 1.3.14-15.fc40 fedora 495.7 KiB guile30 aarch64 3.0.7-12.fc40 fedora 52.0 MiB harfbuzz aarch64 8.3.0-5.fc40 fedora 2.9 MiB jbigkit-libs aarch64 2.1-29.fc40 fedora 437.5 KiB kernel-headers aarch64 6.8.0-0.rc3.26.fc40 fedora 6.1 MiB lcms2 aarch64 2.16-3.fc40 fedora 484.8 KiB libX11 aarch64 1.8.7-3.fc40 fedora 1.3 MiB libX11-common noarch 1.8.7-3.fc40 fedora 1.1 MiB libXau aarch64 1.0.11-6.fc40 fedora 242.8 KiB libXext aarch64 1.3.6-1.fc40 fedora 209.9 KiB libXft aarch64 2.3.8-6.fc40 fedora 256.4 KiB libXrender aarch64 0.9.11-6.fc40 fedora 198.1 KiB libasan aarch64 14.0.1-0.4.fc40 fedora 1.6 MiB libatomic aarch64 14.0.1-0.4.fc40 fedora 196.8 KiB libb2 aarch64 0.98.1-11.fc40 fedora 202.1 KiB libgfortran aarch64 14.0.1-0.4.fc40 fedora 1.5 MiB libimagequant aarch64 4.0.3-3.fc40 fedora 730.5 KiB libjpeg-turbo aarch64 2.1.4-6.fc40 fedora 579.9 KiB liblerc aarch64 4.0.0-6.fc40 fedora 610.4 KiB libmpc aarch64 1.3.1-5.fc40 fedora 280.7 KiB libpng aarch64 2:1.6.40-3.fc40 fedora 333.6 KiB libqhull_r aarch64 1:8.0.2-4.fc40 fedora 583.4 KiB libraqm aarch64 0.8.0-7.fc40 fedora 196.6 KiB libstdc++-devel aarch64 14.0.1-0.4.fc40 fedora 14.3 MiB libtiff aarch64 4.6.0-2.fc40 fedora 1.7 MiB libubsan aarch64 14.0.1-0.4.fc40 fedora 539.2 KiB libwebp aarch64 1.3.2-4.fc40 fedora 1.2 MiB libxcb aarch64 1.16-4.fc40 fedora 5.0 MiB libxcrypt-devel aarch64 4.4.36-5.fc40 fedora 30.3 KiB libxslt aarch64 1.1.39-3.fc40 fedora 865.6 KiB m4 aarch64 1.4.19-9.fc40 fedora 668.5 KiB make aarch64 1:4.4.1-6.fc40 fedora 1.8 MiB mpdecimal aarch64 2.5.1-9.fc40 fedora 328.7 KiB nettle aarch64 3.9.1-6.fc40 fedora 953.6 KiB openblas aarch64 0.3.26-1.fc40 fedora 96.0 KiB openblas-openmp aarch64 0.3.26-1.fc40 fedora 19.3 MiB openjpeg2 aarch64 2.5.0-7.fc40 fedora 537.1 KiB pixman aarch64 0.43.0-3.fc40 fedora 718.3 KiB pyproject-rpm-macros noarch 1.12.0-1.fc40 fedora 98.8 KiB python-pip-wheel noarch 23.3.2-1.fc40 fedora 1.5 MiB python-rpm-macros noarch 3.12-7.fc40 fedora 22.1 KiB python3 aarch64 3.12.1-4.fc40 fedora 211.8 KiB python3-appdirs noarch 1.4.4-13.fc40 fedora 69.0 KiB python3-brotli aarch64 1.1.0-3.fc40 fedora 912.0 KiB python3-cairo aarch64 1.25.1-3.fc40 fedora 584.4 KiB python3-charset-normalizer noarch 3.3.2-3.fc40 fedora 312.7 KiB python3-contourpy aarch64 1.2.0-3.fc40 fedora 872.5 KiB python3-cycler noarch 0.11.0-11.fc40 fedora 38.2 KiB python3-dateutil noarch 1:2.8.2-13.fc40 fedora 877.8 KiB python3-fonttools aarch64 4.47.2-4.fc40 fedora 18.4 MiB python3-fs noarch 2.4.16-7.fc40 fedora 1.3 MiB python3-idna noarch 3.6-3.fc40 fedora 502.3 KiB python3-kiwisolver aarch64 1.4.5-3.fc40 fedora 289.3 KiB python3-libs aarch64 3.12.1-4.fc40 fedora 51.9 MiB python3-lxml aarch64 4.9.4-1.fc40 fedora 5.7 MiB python3-matplotlib-data noarch 3.8.2-4.fc40 fedora 740.9 KiB python3-matplotlib-data-fonts noarch 3.8.2-4.fc40 fedora 7.9 MiB python3-matplotlib-tk aarch64 3.8.2-4.fc40 fedora 299.5 KiB python3-numpy-f2py aarch64 1:1.26.2-4.fc40 fedora 2.6 MiB python3-olefile noarch 0.47-3.fc40 fedora 343.2 KiB python3-packaging noarch 23.2-4.fc40 fedora 421.1 KiB python3-pillow aarch64 10.2.0-3.fc40 fedora 4.1 MiB python3-pillow-tk aarch64 10.2.0-3.fc40 fedora 234.4 KiB python3-pooch noarch 1.5.2-15.fc40 fedora 548.7 KiB python3-pyparsing noarch 3.1.1-3.fc40 fedora 1.0 MiB python3-requests noarch 2.31.0-3.fc40 fedora 462.4 KiB python3-rpm-generators noarch 14-10.fc40 fedora 81.7 KiB python3-rpm-macros noarch 3.12-7.fc40 fedora 6.4 KiB python3-six noarch 1.16.0-14.fc40 fedora 117.7 KiB python3-tkinter aarch64 3.12.1-4.fc40 fedora 2.3 MiB tcl aarch64 1:8.6.13-2.fc40 fedora 4.6 MiB tk aarch64 1:8.6.13-3.fc40 fedora 4.0 MiB tzdata noarch 2023d-3.fc40 fedora 1.6 MiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB Transaction Summary: Installing: 107 packages Total size of inbound packages is 157 MiB. Need to download 142 MiB. After this operation 619 MiB will be used (install 619 MiB, remove 0 B). [ 1/107] python3-devel-0:3.12.1-4.fc40 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/107] python3-setuptools-0:68.2.2-3 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/107] python3-0:3.12.1-4.fc40.aarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/107] python3-libs-0:3.12.1-4.fc40. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/107] python3-packaging-0:23.2-4.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/107] expat-0:2.5.0-5.fc40.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 7/107] libb2-0:0.98.1-11.fc40.aarch6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 8/107] mpdecimal-0:2.5.1-9.fc40.aarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 9/107] python-pip-wheel-0:23.3.2-1.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 10/107] tzdata-0:2023d-3.fc40.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 11/107] gnutls-0:3.8.3-2.fc40.aarch64 100% | 0.0 B/s | 0.0 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python3-numpy-1:1.26.2-4.fc40 100% | 141.6 MiB/s | 6.7 MiB | 00m00s [ 24/107] glibc-devel-0:2.38.9000-39.fc 100% | 27.1 MiB/s | 610.5 KiB | 00m00s [ 25/107] libasan-0:14.0.1-0.4.fc40.aar 100% | 78.6 MiB/s | 482.7 KiB | 00m00s [ 26/107] libatomic-0:14.0.1-0.4.fc40.a 100% | 1.9 MiB/s | 23.4 KiB | 00m00s [ 27/107] cpp-0:14.0.1-0.4.fc40.aarch64 100% | 166.8 MiB/s | 10.7 MiB | 00m00s [ 28/107] libmpc-0:1.3.1-5.fc40.aarch64 100% | 5.0 MiB/s | 72.4 KiB | 00m00s [ 29/107] libubsan-0:14.0.1-0.4.fc40.aa 100% | 27.6 MiB/s | 197.8 KiB | 00m00s [ 30/107] make-1:4.4.1-6.fc40.aarch64 100% | 71.7 MiB/s | 587.7 KiB | 00m00s [ 31/107] flex-0:2.6.4-16.fc40.aarch64 100% | 59.6 MiB/s | 305.2 KiB | 00m00s [ 32/107] libstdc++-devel-0:14.0.1-0.4. 100% | 142.1 MiB/s | 2.7 MiB | 00m00s [ 33/107] freetype-0:2.13.2-4.fc40.aarc 100% | 79.3 MiB/s | 406.0 KiB | 00m00s [ 34/107] python3-scipy-0:1.11.3-6.fc40 100% | 114.7 MiB/s | 15.6 MiB | 00m00s [ 35/107] libqhull_r-1:8.0.2-4.fc40.aar 100% | 10.0 MiB/s | 195.3 KiB | 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checks for 1 package(s). Finish: build setup for ProDy-2.4.1-3.fc40.src.rpm Start: rpmbuild ProDy-2.4.1-3.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1705881600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DEwrpA + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + rm -rf /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.tEDlfG + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-aarch64-cpython-312 creating build/lib.linux-aarch64-cpython-312/prody copying prody/__init__.py -> build/lib.linux-aarch64-cpython-312/prody creating build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/select.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-aarch64-cpython-312/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/atomic creating build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/uniprot.py -> build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/quartataweb.py -> build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/pfam.py -> build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/goa.py -> build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/dali.py -> build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/cath.py -> build/lib.linux-aarch64-cpython-312/prody/database copying prody/database/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/database creating build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/dynamics creating build/lib.linux-aarch64-cpython-312/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-aarch64-cpython-312/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-aarch64-cpython-312/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-aarch64-cpython-312/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-aarch64-cpython-312/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/ensemble creating build/lib.linux-aarch64-cpython-312/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-aarch64-cpython-312/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/kdtree creating build/lib.linux-aarch64-cpython-312/prody/measure copying prody/measure/transform.py -> build/lib.linux-aarch64-cpython-312/prody/measure copying prody/measure/measure.py -> build/lib.linux-aarch64-cpython-312/prody/measure copying prody/measure/contacts.py -> build/lib.linux-aarch64-cpython-312/prody/measure copying prody/measure/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/measure creating build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/header.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-aarch64-cpython-312/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/proteins creating build/lib.linux-aarch64-cpython-312/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-aarch64-cpython-312/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-aarch64-cpython-312/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-aarch64-cpython-312/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-aarch64-cpython-312/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-aarch64-cpython-312/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/sequence creating build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/trajectory creating build/lib.linux-aarch64-cpython-312/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-aarch64-cpython-312/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-aarch64-cpython-312/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-aarch64-cpython-312/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-aarch64-cpython-312/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-aarch64-cpython-312/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/chromatin creating build/lib.linux-aarch64-cpython-312/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-aarch64-cpython-312/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-aarch64-cpython-312/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-aarch64-cpython-312/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-aarch64-cpython-312/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/compounds creating build/lib.linux-aarch64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-aarch64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/domain_decomposition creating build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-aarch64-cpython-312/prody/utilities creating build/lib.linux-aarch64-cpython-312/prody/apps copying prody/apps/apptools.py -> build/lib.linux-aarch64-cpython-312/prody/apps copying prody/apps/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/apps creating build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps creating build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps creating build/lib.linux-aarch64-cpython-312/prody/tests copying prody/tests/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests creating build/lib.linux-aarch64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-aarch64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-aarch64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-aarch64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-aarch64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-aarch64-cpython-312/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/apps creating build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/atomic creating build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles creating build/lib.linux-aarch64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-aarch64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-aarch64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-aarch64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-aarch64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/dynamics creating build/lib.linux-aarch64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-aarch64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-aarch64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-aarch64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-aarch64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/ensemble creating build/lib.linux-aarch64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-aarch64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/kdtree creating build/lib.linux-aarch64-cpython-312/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-aarch64-cpython-312/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-aarch64-cpython-312/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-aarch64-cpython-312/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/measure creating build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/proteins creating build/lib.linux-aarch64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-aarch64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-aarch64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-aarch64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-aarch64-cpython-312/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/sequence creating build/lib.linux-aarch64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-aarch64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-aarch64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/trajectory creating build/lib.linux-aarch64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-aarch64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-aarch64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-aarch64-cpython-312/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-aarch64-cpython-312/prody/tests/utilities creating build/lib.linux-aarch64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-aarch64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-aarch64-cpython-312/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-aarch64-cpython-312/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/prody creating build/temp.linux-aarch64-cpython-312/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-aarch64-cpython-312/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/dynamics/rtbtools.cpython-312-aarch64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-aarch64-cpython-312/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/dynamics/smtools.cpython-312-aarch64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-aarch64-cpython-312/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-aarch64-cpython-312/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/sequence/msatools.cpython-312-aarch64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-aarch64-cpython-312/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/sequence/msaio.cpython-312-aarch64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-aarch64-cpython-312/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/sequence/seqtools.cpython-312-aarch64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-aarch64-cpython-312/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTree.o build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/kdtree/_CKDTree.cpython-312-aarch64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-aarch64-cpython-312/prody/proteins creating build/temp.linux-aarch64-cpython-312/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-aarch64-cpython-312/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/prody/proteins/ccealign.cpython-312-aarch64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.98UOa6 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64 creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-312/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-312/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-312/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-aarch64-cpython-312/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-aarch64-cpython-312/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-aarch64-cpython-312/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-aarch64-cpython-312/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-312/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-312/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-312/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-312/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-aarch64-cpython-312/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-aarch64-cpython-312/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-312/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-312/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-312/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-aarch64-cpython-312/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-aarch64-cpython-312/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-aarch64-cpython-312/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-312/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-312/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-312/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-312/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-aarch64-cpython-312/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-312/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-312/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-312/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-312/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-aarch64-cpython-312/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-aarch64-cpython-312/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-aarch64-cpython-312/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-aarch64-cpython-312/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-aarch64-cpython-312/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps copying build/lib.linux-aarch64-cpython-312/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-aarch64-cpython-312/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-aarch64-cpython-312/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-aarch64-cpython-312/prody/utilities/TreeConstruction.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/catchall.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/drawtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/eigtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/laptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/legacy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/seqtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-aarch64-cpython-312/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-aarch64-cpython-312/prody/domain_decomposition/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-aarch64-cpython-312/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/domain_decomposition creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-312/prody/compounds/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-312/prody/compounds/bird.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-312/prody/compounds/ccd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-312/prody/compounds/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-aarch64-cpython-312/prody/compounds/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-312/prody/chromatin/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-312/prody/chromatin/cluster.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-312/prody/chromatin/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-312/prody/chromatin/hic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-312/prody/chromatin/norm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-aarch64-cpython-312/prody/chromatin/straw.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-aarch64-cpython-312/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/seqtools.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/msaio.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/msatools.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-aarch64-cpython-312/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/ccealign.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/cifheader.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/emdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/fixer.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/starfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/waterbridges.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-aarch64-cpython-312/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-312/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-312/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-312/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-aarch64-cpython-312/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-aarch64-cpython-312/prody/kdtree/_CKDTree.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-aarch64-cpython-312/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-aarch64-cpython-312/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-312/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-312/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-312/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-312/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-aarch64-cpython-312/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/smtools.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/rtbtools.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/adaptive.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/bildfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/entropy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/essa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/exgnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/imanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/mechstiff.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/perturb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-aarch64-cpython-312/prody/dynamics/vmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/cath.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/dali.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/goa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/quartataweb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-aarch64-cpython-312/prody/database/uniprot.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/acceptor.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/angle.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/crossterm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/dihedral.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/donor.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/improper.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/nbexclusion.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-aarch64-cpython-312/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/fixer.py to fixer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure/measure.py to measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/prody/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmp44q8f21x.py' /usr/bin/python3 /tmp/tmp44q8f21x.py /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmp44q8f21x.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12/site-packages/ProDy-2.4.1-py3.12.egg-info running install_scripts Installing evol script to /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin Installing prody script to /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + rm -rfv /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + rm -f /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin/evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.12-prody + cp -pr ./evol ./python3.12-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.12-prody ./python3.12-evol + for i in prody-3.12 + touch -r ./python3.12-prody prody-3.12 + install -p prody-3.12 /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + install -p ./prody /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + install -p ./python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + ln -sf /usr/bin/python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin/prody-3.12 + for i in evol-3.12 + touch -r ./python3.12-evol evol-3.12 + install -p evol-3.12 /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + install -p ./evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + install -p ./python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin + ln -sf /usr/bin/python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/bin/evol-3.12 + cd .. + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-3.fc40 --unique-debug-suffix -2.4.1-3.fc40.aarch64 --unique-debug-src-base ProDy-2.4.1-3.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-3.fc40.aarch64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/lib64/python3.12 using python3.12 /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: python3-ProDy-2.4.1-3.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xviY7X + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/share/doc/python3-ProDy + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1/README.rst /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.bVqeAp + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/share/licenses/python3-ProDy + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol warning: absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Provides: ProDy = 0:2.4.1-3.fc40 python-ProDy = 2.4.1-3.fc40 python3-ProDy = 2.4.1-3.fc40 python3-ProDy(aarch-64) = 2.4.1-3.fc40 python3.12-ProDy = 2.4.1-3.fc40 python3.12dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(biopython) python3.12dist(numpy) >= 1.10 python3.12dist(pyparsing) python3.12dist(scipy) python3.12dist(setuptools) Obsoletes: python-ProDy < 2.4.1-3.fc40 Processing files: ProDy-debugsource-2.4.1-3.fc40.aarch64 Provides: ProDy-debugsource = 2.4.1-3.fc40 ProDy-debugsource(aarch-64) = 2.4.1-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-3.fc40.aarch64 Provides: debuginfo(build-id) = 0f2e1075b41c12f1537dfa664cce0ebc524de6c1 debuginfo(build-id) = 1424158ab283b712f754c012515c2a08ff4e2bea debuginfo(build-id) = 3012071d178d88b38054977e4b8e7158508d694d debuginfo(build-id) = 9c7eab7b1d0a492325a32a61862fcefd836dba52 debuginfo(build-id) = a64b5cab3c5436bd9b9954a19c5e27823da80717 debuginfo(build-id) = cf8b7a9d08a059c43b69b02db99ba24baa5de197 debuginfo(build-id) = d4cede8f64a8350905129585ba9dd11f9fc88367 python-ProDy-debuginfo = 2.4.1-3.fc40 python3-ProDy-debuginfo = 2.4.1-3.fc40 python3-ProDy-debuginfo(aarch-64) = 2.4.1-3.fc40 python3.12-ProDy-debuginfo = 2.4.1-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(aarch-64) = 2.4.1-3.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-3.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-3.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-3.fc40.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ARLBTK + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.c82bl9 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + rm -rf ProDy-2.4.1 ProDy-2.4.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Finish: rpmbuild ProDy-2.4.1-3.fc40.src.rpm Finish: build phase for ProDy-2.4.1-3.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1707280564.371572/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-3.fc40.src.rpm) Config(child) 1 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "aarch64" }, { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "aarch64" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "src" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "aarch64" } ] } RPMResults finished