Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c110' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6995512-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 0.70 PID: 6851 Logging PID: 6852 Task: {'appstream': False, 'background': False, 'build_id': 6995512, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ebc0ac8bcac74aeaba74679a354cd83182a56444', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/music/urllib3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-3', 'project_dirname': 'urllib3', 'project_name': 'urllib3', 'project_owner': 'music', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/music/urllib3/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'music/urllib3--music', 'source_json': {}, 'source_type': None, 'submitter': 'music', 'tags': [], 'task_id': '6995512-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/music/urllib3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/music/urllib3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy'... Running: git checkout ebc0ac8bcac74aeaba74679a354cd83182a56444 -- cmd: ['git', 'checkout', 'ebc0ac8bcac74aeaba74679a354cd83182a56444', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy rc: 0 stdout: stderr: Note: switching to 'ebc0ac8bcac74aeaba74679a354cd83182a56444'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ebc0ac8 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/music/urllib3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.9M 100 25.9M 0 0 32.0M 0 --:--:-- --:--:-- --:--:-- 31.9M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1707280462.751361 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1707280462.751361 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy/ProDy.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1707280462.751361/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1707280462.751361/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/b00b8ad2ade6ce6b63d35fa4ca3093b696da347d8b51631af1443f208a0c6156/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/b00b8ad2ade6ce6b63d35fa4ca3093b696da347d8b51631af1443f208a0c6156/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 95 kB/s | 11 kB 00:00 local 56 MB/s | 74 MB 00:01 Dependencies resolved. ================================================================================ Package Architecture Version Repository Size ================================================================================ Installing: dnf5 x86_64 5.1.11-3.fc40 local 565 k dnf5-plugins x86_64 5.1.11-3.fc40 local 332 k Installing dependencies: fmt x86_64 10.2.1-3.fc40 local 125 k libdnf5 x86_64 5.1.11-3.fc40 local 957 k libdnf5-cli x86_64 5.1.11-3.fc40 local 224 k sdbus-cpp x86_64 1.4.0-2.fc40 local 110 k Transaction Summary ================================================================================ Install 6 Packages Total download size: 2.3 M Installed size: 6.3 M Downloading Packages: (1/6): fmt-10.2.1-3.fc40.x86_64.rpm 1.3 MB/s | 125 kB 00:00 (2/6): dnf5-plugins-5.1.11-3.fc40.x86_64.rpm 2.7 MB/s | 332 kB 00:00 (3/6): dnf5-5.1.11-3.fc40.x86_64.rpm 4.4 MB/s | 565 kB 00:00 (4/6): libdnf5-5.1.11-3.fc40.x86_64.rpm 24 MB/s | 957 kB 00:00 (5/6): libdnf5-cli-5.1.11-3.fc40.x86_64.rpm 12 MB/s | 224 kB 00:00 (6/6): sdbus-cpp-1.4.0-2.fc40.x86_64.rpm 9.0 MB/s | 110 kB 00:00 -------------------------------------------------------------------------------- Total 16 MB/s | 2.3 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-3.fc40.x86_64 1/6 Installing : libdnf5-5.1.11-3.fc40.x86_64 2/6 Installing : libdnf5-cli-5.1.11-3.fc40.x86_64 3/6 Installing : dnf5-5.1.11-3.fc40.x86_64 4/6 Installing : sdbus-cpp-1.4.0-2.fc40.x86_64 5/6 Installing : dnf5-plugins-5.1.11-3.fc40.x86_64 6/6 Running scriptlet: dnf5-plugins-5.1.11-3.fc40.x86_64 6/6 Installed: dnf5-5.1.11-3.fc40.x86_64 dnf5-plugins-5.1.11-3.fc40.x86_64 fmt-10.2.1-3.fc40.x86_64 libdnf5-5.1.11-3.fc40.x86_64 libdnf5-cli-5.1.11-3.fc40.x86_64 sdbus-cpp-1.4.0-2.fc40.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1707280462.751361/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-4.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.11-3.fc40.x86_64 dnf5-plugins-5.1.11-3.fc40.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 103.3 KiB/s | 7.8 KiB | 00m00s local 100% | 39.5 MiB/s | 14.9 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.26-2.fc40 local 8.3 MiB bzip2 i686 1.0.8-18.fc40 local 89.9 KiB coreutils i686 9.4-6.fc40 local 5.6 MiB cpio i686 2.15-1.fc40 local 1.1 MiB diffutils i686 3.10-5.fc40 local 1.6 MiB fedora-release noarch 40-0.30 local 0.0 B findutils i686 1:4.9.0-8.fc40 local 1.5 MiB gawk i686 5.3.0-3.fc40 local 1.7 MiB glibc-minimal-langpack i686 2.38.9000-39.fc40 local 0.0 B grep i686 3.11-7.fc40 local 1.0 MiB gzip i686 1.13-1.fc40 local 384.1 KiB info i686 7.1-2.fc40 local 360.4 KiB patch i686 2.7.6-24.fc40 local 297.9 KiB redhat-rpm-config noarch 282-1.fc40 local 183.2 KiB rpm-build i686 4.19.1-4.fc40 local 154.6 KiB sed i686 4.9-1.fc40 local 860.6 KiB shadow-utils i686 2:4.14.0-5.fc40 local 4.0 MiB tar i686 2:1.35-3.fc40 local 3.0 MiB unzip i686 6.0-63.fc40 local 392.2 KiB util-linux i686 2.40-0.1.fc40 local 3.4 MiB which i686 2.21-41.fc40 local 78.8 KiB xz i686 5.4.6-1.fc40 local 2.0 MiB Installing dependencies: alternatives i686 1.26-3.fc40 local 57.4 KiB ansible-srpm-macros noarch 1-14.fc40 local 35.7 KiB audit-libs i686 4.0-8.fc40 local 325.8 KiB authselect i686 1.5.0-3.fc40 local 163.6 KiB authselect-libs i686 1.5.0-3.fc40 local 991.0 KiB basesystem noarch 11-20.fc40 local 0.0 B binutils i686 2.41-32.fc40 local 24.4 MiB binutils-gold i686 2.41-32.fc40 local 2.1 MiB bzip2-libs i686 1.0.8-18.fc40 local 75.9 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 local 2.3 MiB coreutils-common i686 9.4-6.fc40 local 11.4 MiB cracklib i686 2.9.11-5.fc40 local 235.7 KiB crypto-policies noarch 20240201-1.git9f501f3.fc40 local 149.3 KiB curl i686 8.6.0-3.fc40 local 733.8 KiB cyrus-sasl-lib i686 2.1.28-19.fc40 local 2.5 MiB debugedit i686 5.0-14.fc40 local 188.7 KiB dwz i686 0.15-6.fc40 local 324.9 KiB ed i686 1.20-2.fc40 local 141.2 KiB efi-srpm-macros noarch 5-11.fc40 local 40.1 KiB elfutils i686 0.190-6.fc40 local 2.5 MiB elfutils-debuginfod-client i686 0.190-6.fc40 local 55.2 KiB elfutils-default-yama-scope noarch 0.190-6.fc40 local 1.8 KiB elfutils-libelf i686 0.190-6.fc40 local 1.0 MiB elfutils-libs i686 0.190-6.fc40 local 692.6 KiB fedora-gpg-keys noarch 40-0.2 local 123.2 KiB fedora-release-common noarch 40-0.30 local 19.1 KiB fedora-release-identity-basic noarch 40-0.30 local 694.0 B fedora-repos noarch 40-0.2 local 4.9 KiB fedora-repos-rawhide noarch 40-0.2 local 2.2 KiB file i686 5.45-3.fc40 local 94.5 KiB file-libs i686 5.45-3.fc40 local 9.9 MiB filesystem i686 3.18-8.fc40 local 88.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 local 55.3 KiB forge-srpm-macros noarch 0.2.0-3.fc40 local 37.4 KiB fpc-srpm-macros noarch 1.3-12.fc40 local 144.0 B gdb-minimal i686 14.1-8.fc40 local 12.9 MiB gdbm i686 1:1.23-6.fc40 local 449.8 KiB gdbm-libs i686 1:1.23-6.fc40 local 124.4 KiB ghc-srpm-macros noarch 1.6.1-5.fc40 local 369.0 B glibc i686 2.38.9000-39.fc40 local 5.5 MiB glibc-common i686 2.38.9000-39.fc40 local 1.0 MiB glibc-gconv-extra i686 2.38.9000-39.fc40 local 7.3 MiB gmp i686 1:6.2.1-8.fc40 local 721.7 KiB gnat-srpm-macros noarch 6-5.fc40 local 1.0 KiB go-srpm-macros noarch 3.3.1-3.fc40 local 60.6 KiB jansson i686 2.13.1-9.fc40 local 87.6 KiB kernel-srpm-macros noarch 1.0-22.fc40 local 1.9 KiB keyutils-libs i686 1.6.3-3.fc40 local 57.6 KiB krb5-libs i686 1.21.2-5.fc40 local 2.3 MiB libacl i686 2.3.2-1.fc40 local 39.3 KiB libarchive i686 3.7.2-3.fc40 local 982.4 KiB libattr i686 2.5.2-3.fc40 local 23.7 KiB libblkid i686 2.40-0.1.fc40 local 259.9 KiB libbrotli i686 1.1.0-3.fc40 local 855.4 KiB libcap i686 2.69-3.fc40 local 201.9 KiB libcap-ng i686 0.8.4-4.fc40 local 67.6 KiB libcom_err i686 1.47.0-4.fc40 local 58.4 KiB libcurl i686 8.6.0-3.fc40 local 800.9 KiB libeconf i686 0.5.2-3.fc40 local 55.2 KiB libevent i686 2.1.12-11.fc40 local 947.9 KiB libfdisk i686 2.40-0.1.fc40 local 410.7 KiB libffi i686 3.4.4-7.fc40 local 76.7 KiB libgcc i686 14.0.1-0.4.fc40 local 261.4 KiB libgomp i686 14.0.1-0.4.fc40 local 520.8 KiB libidn2 i686 2.3.7-1.fc40 local 324.3 KiB libmount i686 2.40-0.1.fc40 local 387.3 KiB libnghttp2 i686 1.59.0-2.fc40 local 165.4 KiB libnsl2 i686 2.0.1-1.fc40 local 57.1 KiB libpkgconf i686 1.9.5-4.fc40 local 80.7 KiB libpsl i686 0.21.5-3.fc40 local 71.8 KiB libpwquality i686 1.4.5-9.fc40 local 410.6 KiB libselinux i686 3.6-4.fc40 local 192.3 KiB libsemanage i686 3.6-3.fc40 local 304.0 KiB libsepol i686 3.6-3.fc40 local 865.5 KiB libsmartcols i686 2.40-0.1.fc40 local 180.1 KiB libssh i686 0.10.6-4.fc40 local 547.3 KiB libssh-config noarch 0.10.6-4.fc40 local 277.0 B libstdc++ i686 14.0.1-0.4.fc40 local 2.8 MiB libtasn1 i686 4.19.0-6.fc40 local 178.9 KiB libtirpc i686 1.3.4-1.rc2.fc40.2 local 209.9 KiB libunistring i686 1.1-7.fc40 local 1.7 MiB libutempter i686 1.2.1-13.fc40 local 56.1 KiB libuuid i686 2.40-0.1.fc40 local 32.9 KiB libverto i686 0.3.2-8.fc40 local 28.7 KiB libxcrypt i686 4.4.36-5.fc40 local 274.2 KiB libxml2 i686 2.12.5-1.fc40 local 1.8 MiB libzstd i686 1.5.5-5.fc40 local 711.2 KiB lua-libs i686 5.4.6-5.fc40 local 308.6 KiB lua-srpm-macros noarch 1-11.fc40 local 1.3 KiB lz4-libs i686 1.9.4-6.fc40 local 132.7 KiB mpfr i686 4.2.1-3.fc40 local 982.5 KiB ncurses-base noarch 6.4-12.20240127.fc40 local 326.2 KiB ncurses-libs i686 6.4-12.20240127.fc40 local 963.1 KiB ocaml-srpm-macros noarch 9-3.fc40 local 1.9 KiB openblas-srpm-macros noarch 2-16.fc40 local 104.0 B openldap i686 2.6.6-1.fc39 local 682.8 KiB openssl-libs i686 1:3.1.4-4.fc40 local 5.8 MiB p11-kit i686 0.25.3-4.fc40 local 2.3 MiB p11-kit-trust i686 0.25.3-4.fc40 local 357.7 KiB package-notes-srpm-macros noarch 0.5-11.fc40 local 1.6 KiB pam i686 1.6.0-1.fc40 local 1.7 MiB pam-libs i686 1.6.0-1.fc40 local 120.7 KiB pcre2 i686 10.42-2.fc40.2 local 648.1 KiB pcre2-syntax noarch 10.42-2.fc40.2 local 235.1 KiB perl-srpm-macros noarch 1-53.fc40 local 861.0 B pkgconf i686 1.9.5-4.fc40 local 78.3 KiB pkgconf-m4 noarch 1.9.5-4.fc40 local 13.9 KiB pkgconf-pkg-config i686 1.9.5-4.fc40 local 979.0 B popt i686 1.19-6.fc40 local 135.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 local 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 local 1.5 KiB python-srpm-macros noarch 3.12-7.fc40 local 50.1 KiB qt5-srpm-macros noarch 5.15.12-3.fc40 local 492.0 B qt6-srpm-macros noarch 6.6.1-5.fc40 local 456.0 B readline i686 8.2-8.fc40 local 457.5 KiB rpm i686 4.19.1-4.fc40 local 2.9 MiB rpm-build-libs i686 4.19.1-4.fc40 local 201.2 KiB rpm-libs i686 4.19.1-4.fc40 local 756.8 KiB rpm-sequoia i686 1.6.0-2.fc40 local 2.6 MiB rust-srpm-macros noarch 25.2-4.fc40 local 5.1 KiB setup noarch 2.14.5-2.fc40 local 720.4 KiB sqlite-libs i686 3.45.1-2.fc40 local 1.5 MiB systemd-libs i686 255.3-1.fc40 local 1.9 MiB util-linux-core i686 2.40-0.1.fc40 local 1.3 MiB xxhash-libs i686 0.8.2-2.fc40 local 115.8 KiB xz-libs i686 5.4.6-1.fc40 local 229.2 KiB zig-srpm-macros noarch 1-2.fc40 local 1.1 KiB zip i686 3.0-40.fc40 local 707.0 KiB zlib-ng-compat i686 2.1.6-2.fc40 local 145.4 KiB zstd i686 1.5.5-5.fc40 local 1.5 MiB Installing groups: build Transaction Summary: Installing: 152 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 173 MiB will be used (install 173 MiB, remove 0 B). [ 1/152] bzip2-0:1.0.8-18.fc40.i686 100% | 1.0 MiB/s | 52.6 KiB | 00m00s [ 2/152] cpio-0:2.15-1.fc40.i686 100% | 9.8 MiB/s | 290.5 KiB | 00m00s [ 3/152] diffutils-0:3.10-5.fc40.i686 100% | 15.8 MiB/s | 403.3 KiB | 00m00s [ 4/152] coreutils-0:9.4-6.fc40.i686 100% | 9.5 MiB/s | 1.2 MiB | 00m00s [ 5/152] fedora-release-0:40-0.30.noar 100% | 553.2 KiB/s | 10.0 KiB | 00m00s [ 6/152] bash-0:5.2.26-2.fc40.i686 100% | 14.3 MiB/s | 1.8 MiB | 00m00s [ 7/152] glibc-minimal-langpack-0:2.38 100% | 4.3 MiB/s | 97.5 KiB | 00m00s [ 8/152] findutils-1:4.9.0-8.fc40.i686 100% | 14.6 MiB/s | 494.4 KiB | 00m00s [ 9/152] gawk-0:5.3.0-3.fc40.i686 100% | 29.9 MiB/s | 1.0 MiB | 00m00s [ 10/152] grep-0:3.11-7.fc40.i686 100% | 18.0 MiB/s | 295.7 KiB | 00m00s [ 11/152] info-0:7.1-2.fc40.i686 100% | 13.9 MiB/s | 185.6 KiB | 00m00s [ 12/152] gzip-0:1.13-1.fc40.i686 100% | 9.9 MiB/s | 162.5 KiB | 00m00s [ 13/152] patch-0:2.7.6-24.fc40.i686 100% | 9.9 MiB/s | 141.9 KiB | 00m00s [ 14/152] redhat-rpm-config-0:282-1.fc4 100% | 7.3 MiB/s | 74.9 KiB | 00m00s [ 15/152] rpm-build-0:4.19.1-4.fc40.i68 100% | 5.4 MiB/s | 71.4 KiB | 00m00s [ 16/152] shadow-utils-2:4.14.0-5.fc40. 100% | 40.4 MiB/s | 1.3 MiB | 00m00s [ 17/152] tar-2:1.35-3.fc40.i686 100% | 21.8 MiB/s | 868.8 KiB | 00m00s [ 18/152] unzip-0:6.0-63.fc40.i686 100% | 11.7 MiB/s | 180.4 KiB | 00m00s [ 19/152] which-0:2.21-41.fc40.i686 100% | 3.7 MiB/s | 41.5 KiB | 00m00s [ 20/152] xz-0:5.4.6-1.fc40.i686 100% | 32.7 MiB/s | 535.6 KiB | 00m00s [ 21/152] sed-0:4.9-1.fc40.i686 100% | 3.5 MiB/s | 311.4 KiB | 00m00s [ 22/152] util-linux-0:2.40-0.1.fc40.i6 100% | 26.7 MiB/s | 1.2 MiB | 00m00s [ 23/152] filesystem-0:3.18-8.fc40.i686 100% | 36.8 MiB/s | 1.1 MiB | 00m00s [ 24/152] ncurses-libs-0:6.4-12.2024012 100% | 12.3 MiB/s | 353.9 KiB | 00m00s [ 25/152] bzip2-libs-0:1.0.8-18.fc40.i6 100% | 3.6 MiB/s | 41.1 KiB | 00m00s [ 26/152] glibc-0:2.38.9000-39.fc40.i68 100% | 38.4 MiB/s | 2.0 MiB | 00m00s [ 27/152] gmp-1:6.2.1-8.fc40.i686 100% | 15.0 MiB/s | 306.4 KiB | 00m00s [ 28/152] libacl-0:2.3.2-1.fc40.i686 100% | 1.8 MiB/s | 25.8 KiB | 00m00s [ 29/152] libattr-0:2.5.2-3.fc40.i686 100% | 1.4 MiB/s | 18.3 KiB | 00m00s [ 30/152] coreutils-common-0:9.4-6.fc40 100% | 51.9 MiB/s | 2.1 MiB | 00m00s [ 31/152] libselinux-0:3.6-4.fc40.i686 100% | 7.0 MiB/s | 92.5 KiB | 00m00s [ 32/152] libcap-0:2.69-3.fc40.i686 100% | 5.8 MiB/s | 83.6 KiB | 00m00s [ 33/152] fedora-release-common-0:40-0. 100% | 1.8 MiB/s | 20.5 KiB | 00m00s [ 34/152] mpfr-0:4.2.1-3.fc40.i686 100% | 20.1 MiB/s | 391.2 KiB | 00m00s [ 35/152] readline-0:8.2-8.fc40.i686 100% | 13.3 MiB/s | 218.4 KiB | 00m00s [ 36/152] glibc-common-0:2.38.9000-39.f 100% | 22.3 MiB/s | 387.5 KiB | 00m00s [ 37/152] openssl-libs-1:3.1.4-4.fc40.i 100% | 44.8 MiB/s | 2.1 MiB | 00m00s [ 38/152] pcre2-0:10.42-2.fc40.2.i686 100% | 15.2 MiB/s | 234.0 KiB | 00m00s [ 39/152] ansible-srpm-macros-0:1-14.fc 100% | 2.5 MiB/s | 20.8 KiB | 00m00s [ 40/152] ed-0:1.20-2.fc40.i686 100% | 6.1 MiB/s | 81.3 KiB | 00m00s [ 41/152] efi-srpm-macros-0:5-11.fc40.n 100% | 2.4 MiB/s | 22.3 KiB | 00m00s [ 42/152] dwz-0:0.15-6.fc40.i686 100% | 9.5 MiB/s | 145.7 KiB | 00m00s [ 43/152] file-0:5.45-3.fc40.i686 100% | 3.0 MiB/s | 48.8 KiB | 00m00s [ 44/152] fonts-srpm-macros-1:2.0.5-14. 100% | 2.6 MiB/s | 26.5 KiB | 00m00s [ 45/152] forge-srpm-macros-0:0.2.0-3.f 100% | 1.3 MiB/s | 18.7 KiB | 00m00s [ 46/152] fpc-srpm-macros-0:1.3-12.fc40 100% | 559.5 KiB/s | 7.8 KiB | 00m00s [ 47/152] ghc-srpm-macros-0:1.6.1-5.fc4 100% | 635.9 KiB/s | 8.3 KiB | 00m00s [ 48/152] gnat-srpm-macros-0:6-5.fc40.n 100% | 588.2 KiB/s | 8.8 KiB | 00m00s [ 49/152] kernel-srpm-macros-0:1.0-22.f 100% | 801.1 KiB/s | 9.6 KiB | 00m00s [ 50/152] go-srpm-macros-0:3.3.1-3.fc40 100% | 1.9 MiB/s | 27.5 KiB | 00m00s [ 51/152] lua-srpm-macros-0:1-11.fc40.n 100% | 616.2 KiB/s | 8.6 KiB | 00m00s [ 52/152] ocaml-srpm-macros-0:9-3.fc40. 100% | 756.1 KiB/s | 9.1 KiB | 00m00s [ 53/152] openblas-srpm-macros-0:2-16.f 100% | 576.9 KiB/s | 7.5 KiB | 00m00s [ 54/152] package-notes-srpm-macros-0:0 100% | 764.9 KiB/s | 9.9 KiB | 00m00s [ 55/152] perl-srpm-macros-0:1-53.fc40. 100% | 698.5 KiB/s | 8.4 KiB | 00m00s [ 56/152] pyproject-srpm-macros-0:1.12. 100% | 973.5 KiB/s | 13.6 KiB | 00m00s [ 57/152] python-srpm-macros-0:3.12-7.f 100% | 1.7 MiB/s | 23.8 KiB | 00m00s [ 58/152] qt5-srpm-macros-0:5.15.12-3.f 100% | 710.8 KiB/s | 8.5 KiB | 00m00s [ 59/152] qt6-srpm-macros-0:6.6.1-5.fc4 100% | 633.7 KiB/s | 8.9 KiB | 00m00s [ 60/152] rust-srpm-macros-0:25.2-4.fc4 100% | 1.0 MiB/s | 12.7 KiB | 00m00s [ 61/152] zig-srpm-macros-0:1-2.fc40.no 100% | 535.9 KiB/s | 8.0 KiB | 00m00s [ 62/152] rpm-0:4.19.1-4.fc40.i686 100% | 8.0 MiB/s | 510.3 KiB | 00m00s [ 63/152] zip-0:3.0-40.fc40.i686 100% | 4.4 MiB/s | 267.2 KiB | 00m00s [ 64/152] debugedit-0:5.0-14.fc40.i686 100% | 5.5 MiB/s | 79.5 KiB | 00m00s [ 65/152] elfutils-libelf-0:0.190-6.fc4 100% | 13.1 MiB/s | 200.8 KiB | 00m00s [ 66/152] elfutils-0:0.190-6.fc40.i686 100% | 24.6 MiB/s | 555.2 KiB | 00m00s [ 67/152] pkgconf-pkg-config-0:1.9.5-4. 100% | 794.2 KiB/s | 9.5 KiB | 00m00s [ 68/152] popt-0:1.19-6.fc40.i686 100% | 5.0 MiB/s | 61.7 KiB | 00m00s [ 69/152] rpm-build-libs-0:4.19.1-4.fc4 100% | 8.3 MiB/s | 101.8 KiB | 00m00s [ 70/152] rpm-libs-0:4.19.1-4.fc40.i686 100% | 20.7 MiB/s | 338.6 KiB | 00m00s [ 71/152] audit-libs-0:4.0-8.fc40.i686 100% | 9.5 MiB/s | 127.1 KiB | 00m00s [ 72/152] zstd-0:1.5.5-5.fc40.i686 100% | 15.5 MiB/s | 445.5 KiB | 00m00s [ 73/152] libeconf-0:0.5.2-3.fc40.i686 100% | 2.4 MiB/s | 32.1 KiB | 00m00s [ 74/152] libsemanage-0:3.6-3.fc40.i686 100% | 7.7 MiB/s | 126.0 KiB | 00m00s [ 75/152] libxcrypt-0:4.4.36-5.fc40.i68 100% | 9.8 MiB/s | 120.7 KiB | 00m00s [ 76/152] setup-0:2.14.5-2.fc40.noarch 100% | 14.5 MiB/s | 148.1 KiB | 00m00s [ 77/152] pam-libs-0:1.6.0-1.fc40.i686 100% | 2.9 MiB/s | 59.6 KiB | 00m00s [ 78/152] authselect-libs-0:1.5.0-3.fc4 100% | 17.8 MiB/s | 236.6 KiB | 00m00s [ 79/152] libcap-ng-0:0.8.4-4.fc40.i686 100% | 2.9 MiB/s | 33.0 KiB | 00m00s [ 80/152] libfdisk-0:2.40-0.1.fc40.i686 100% | 14.3 MiB/s | 176.1 KiB | 00m00s [ 81/152] libblkid-0:2.40-0.1.fc40.i686 100% | 3.2 MiB/s | 128.3 KiB | 00m00s [ 82/152] libmount-0:2.40-0.1.fc40.i686 100% | 14.4 MiB/s | 162.4 KiB | 00m00s [ 83/152] binutils-0:2.41-32.fc40.i686 100% | 27.2 MiB/s | 5.8 MiB | 00m00s [ 84/152] libutempter-0:1.2.1-13.fc40.i 100% | 1.9 MiB/s | 26.7 KiB | 00m00s [ 85/152] pam-0:1.6.0-1.fc40.i686 100% | 24.6 MiB/s | 530.0 KiB | 00m00s [ 86/152] libsmartcols-0:2.40-0.1.fc40. 100% | 2.0 MiB/s | 86.2 KiB | 00m00s [ 87/152] libuuid-0:2.40-0.1.fc40.i686 100% | 650.1 KiB/s | 30.6 KiB | 00m00s [ 88/152] systemd-libs-0:255.3-1.fc40.i 100% | 29.2 MiB/s | 747.1 KiB | 00m00s [ 89/152] xz-libs-0:5.4.6-1.fc40.i686 100% | 10.6 MiB/s | 118.9 KiB | 00m00s [ 90/152] zlib-ng-compat-0:2.1.6-2.fc40 100% | 1.6 MiB/s | 81.4 KiB | 00m00s [ 91/152] glibc-gconv-extra-0:2.38.9000 100% | 38.4 MiB/s | 1.7 MiB | 00m00s [ 92/152] libgcc-0:14.0.1-0.4.fc40.i686 100% | 9.0 MiB/s | 110.4 KiB | 00m00s [ 93/152] ncurses-base-0:6.4-12.2024012 100% | 6.9 MiB/s | 63.8 KiB | 00m00s [ 94/152] libsepol-0:3.6-3.fc40.i686 100% | 23.0 MiB/s | 354.0 KiB | 00m00s [ 95/152] basesystem-0:11-20.fc40.noarc 100% | 152.9 KiB/s | 7.2 KiB | 00m00s [ 96/152] util-linux-core-0:2.40-0.1.fc 100% | 3.8 MiB/s | 515.4 KiB | 00m00s [ 97/152] crypto-policies-0:20240201-1. 100% | 3.4 MiB/s | 69.0 KiB | 00m00s [ 98/152] fedora-repos-0:40-0.2.noarch 100% | 779.1 KiB/s | 9.3 KiB | 00m00s [ 99/152] ca-certificates-0:2023.2.62_v 100% | 28.1 MiB/s | 862.1 KiB | 00m00s [100/152] pcre2-syntax-0:10.42-2.fc40.2 100% | 10.7 MiB/s | 142.7 KiB | 00m00s [101/152] libarchive-0:3.7.2-3.fc40.i68 100% | 20.8 MiB/s | 448.1 KiB | 00m00s [102/152] alternatives-0:1.26-3.fc40.i6 100% | 1.6 MiB/s | 40.1 KiB | 00m00s [103/152] binutils-gold-0:2.41-32.fc40. 100% | 30.7 MiB/s | 849.3 KiB | 00m00s [104/152] jansson-0:2.13.1-9.fc40.i686 100% | 4.1 MiB/s | 45.8 KiB | 00m00s [105/152] elfutils-debuginfod-client-0: 100% | 928.8 KiB/s | 38.1 KiB | 00m00s [106/152] libstdc++-0:14.0.1-0.4.fc40.i 100% | 32.6 MiB/s | 935.5 KiB | 00m00s [107/152] libzstd-0:1.5.5-5.fc40.i686 100% | 21.4 MiB/s | 284.9 KiB | 00m00s [108/152] pkgconf-0:1.9.5-4.fc40.i686 100% | 3.8 MiB/s | 42.6 KiB | 00m00s [109/152] pkgconf-m4-0:1.9.5-4.fc40.noa 100% | 1.7 MiB/s | 13.8 KiB | 00m00s [110/152] libgomp-0:14.0.1-0.4.fc40.i68 100% | 23.3 MiB/s | 334.7 KiB | 00m00s [111/152] lua-libs-0:5.4.6-5.fc40.i686 100% | 11.2 MiB/s | 149.1 KiB | 00m00s [112/152] file-libs-0:5.45-3.fc40.i686 100% | 4.4 MiB/s | 771.3 KiB | 00m00s [113/152] elfutils-libs-0:0.190-6.fc40. 100% | 2.7 MiB/s | 288.3 KiB | 00m00s [114/152] rpm-sequoia-0:1.6.0-2.fc40.i6 100% | 29.3 MiB/s | 931.1 KiB | 00m00s [115/152] lz4-libs-0:1.9.4-6.fc40.i686 100% | 4.5 MiB/s | 69.8 KiB | 00m00s [116/152] authselect-0:1.5.0-3.fc40.i68 100% | 12.9 MiB/s | 145.0 KiB | 00m00s [117/152] gdbm-libs-1:1.23-6.fc40.i686 100% | 5.3 MiB/s | 59.6 KiB | 00m00s [118/152] gdbm-1:1.23-6.fc40.i686 100% | 8.6 MiB/s | 149.6 KiB | 00m00s [119/152] libnsl2-0:2.0.1-1.fc40.i686 100% | 3.0 MiB/s | 30.5 KiB | 00m00s [120/152] libpwquality-0:1.4.5-9.fc40.i 100% | 8.2 MiB/s | 109.0 KiB | 00m00s [121/152] libtirpc-0:1.3.4-1.rc2.fc40.2 100% | 9.0 MiB/s | 101.8 KiB | 00m00s [122/152] p11-kit-trust-0:0.25.3-4.fc40 100% | 12.2 MiB/s | 137.4 KiB | 00m00s [123/152] p11-kit-0:0.25.3-4.fc40.i686 100% | 17.7 MiB/s | 471.6 KiB | 00m00s [124/152] sqlite-libs-0:3.45.1-2.fc40.i 100% | 9.3 MiB/s | 748.9 KiB | 00m00s [125/152] fedora-gpg-keys-0:40-0.2.noar 100% | 10.6 MiB/s | 119.4 KiB | 00m00s [126/152] fedora-repos-rawhide-0:40-0.2 100% | 892.3 KiB/s | 8.9 KiB | 00m00s [127/152] elfutils-default-yama-scope-0 100% | 1.6 MiB/s | 12.9 KiB | 00m00s [128/152] libpkgconf-0:1.9.5-4.fc40.i68 100% | 3.3 MiB/s | 40.6 KiB | 00m00s [129/152] cracklib-0:2.9.11-5.fc40.i686 100% | 7.3 MiB/s | 82.3 KiB | 00m00s [130/152] libcom_err-0:1.47.0-4.fc40.i6 100% | 2.3 MiB/s | 26.3 KiB | 00m00s [131/152] libffi-0:3.4.4-7.fc40.i686 100% | 3.6 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00m00s [ 67/154] Installing libcap-0:2.69-3.fc 100% | 100.8 MiB/s | 206.4 KiB | 00m00s [ 68/154] Installing systemd-libs-0:255 100% | 275.7 MiB/s | 1.9 MiB | 00m00s [ 69/154] Installing libsmartcols-0:2.4 100% | 177.0 MiB/s | 181.2 KiB | 00m00s [ 70/154] Installing libsepol-0:3.6-3.f 100% | 282.0 MiB/s | 866.4 KiB | 00m00s [ 71/154] Installing libselinux-0:3.6-4 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 72/154] Installing sed-0:4.9-1.fc40.i 100% | 141.4 MiB/s | 868.8 KiB | 00m00s [ 73/154] Installing findutils-1:4.9.0- 100% | 212.5 MiB/s | 1.5 MiB | 00m00s [ 74/154] Installing libmount-0:2.40-0. 100% | 189.7 MiB/s | 388.5 KiB | 00m00s [ 75/154] Installing alternatives-0:1.2 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [ 76/154] Installing jansson-0:2.13.1-9 100% | 86.9 MiB/s | 88.9 KiB | 00m00s [ 77/154] Installing lua-libs-0:5.4.6-5 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 78/154] Installing libcom_err-0:1.47. 100% | 58.1 MiB/s | 59.5 KiB | 00m00s [ 79/154] Installing libtasn1-0:4.19.0- 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Installing libgomp-0:14.0.1-0 100% | 255.0 MiB/s | 522.2 KiB | 00m00s [102/154] Installing libpkgconf-0:1.9.5 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [103/154] Installing pkgconf-0:1.9.5-4. 100% | 78.9 MiB/s | 80.8 KiB | 00m00s [104/154] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [105/154] Installing libffi-0:3.4.4-7.f 100% | 76.3 MiB/s | 78.1 KiB | 00m00s [106/154] Installing p11-kit-0:0.25.3-4 100% | 193.2 MiB/s | 2.3 MiB | 00m00s [107/154] Installing p11-kit-trust-0:0. 100% | 39.0 MiB/s | 359.4 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.i686 [108/154] Installing openssl-libs-1:3.1 100% | 288.2 MiB/s | 5.8 MiB | 00m00s [109/154] Installing coreutils-0:9.4-6. 100% | 209.2 MiB/s | 5.6 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar 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00m00s [119/154] Installing libevent-0:2.1.12- 100% | 232.4 MiB/s | 951.7 KiB | 00m00s [120/154] Installing openldap-0:2.6.6-1 100% | 223.5 MiB/s | 686.5 KiB | 00m00s [121/154] Installing keyutils-libs-0:1. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [122/154] Installing libverto-0:0.3.2-8 100% | 29.8 MiB/s | 30.5 KiB | 00m00s [123/154] Installing krb5-libs-0:1.21.2 100% | 179.3 MiB/s | 2.3 MiB | 00m00s [124/154] Installing libtirpc-0:1.3.4-1 100% | 103.3 MiB/s | 211.6 KiB | 00m00s [125/154] Installing libnsl2-0:2.0.1-1. 100% | 28.4 MiB/s | 58.2 KiB | 00m00s [126/154] Installing pam-0:1.6.0-1.fc40 100% | 90.9 MiB/s | 1.7 MiB | 00m00s [127/154] Installing libssh-0:0.10.6-4. 100% | 178.8 MiB/s | 549.4 KiB | 00m00s [128/154] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.2 KiB | 00m00s [129/154] Installing libbrotli-0:1.1.0- 100% | 209.4 MiB/s | 857.7 KiB | 00m00s [130/154] Installing libnghttp2-0:1.59. 100% | 162.6 MiB/s | 166.6 KiB | 00m00s [131/154] Installing libcurl-0:8.6.0-3. 100% | 261.1 MiB/s | 802.0 KiB | 00m00s [132/154] Installing elfutils-debuginfo 100% | 55.7 MiB/s | 57.1 KiB | 00m00s [133/154] Installing elfutils-libs-0:0. 100% | 226.1 MiB/s | 694.5 KiB | 00m00s [134/154] Installing binutils-gold-0:2. 100% | 141.1 MiB/s | 2.1 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.41-32.fc40.i686 >>> Stop post-install scriptlet: binutils-gold-0:2.41-32.fc40.i686 [135/154] Installing binutils-0:2.41-32 100% | 268.8 MiB/s | 24.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.41-32.fc40.i686 >>> Stop post-install scriptlet: binutils-0:2.41-32.fc40.i686 [136/154] Installing elfutils-0:0.190-6 100% | 251.2 MiB/s | 2.5 MiB | 00m00s [137/154] Installing gdb-minimal-0:14.1 100% | 275.3 MiB/s | 12.9 MiB | 00m00s [138/154] Installing debugedit-0:5.0-14 100% | 93.4 MiB/s | 191.4 KiB | 00m00s [139/154] Installing rpm-build-libs-0:4 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [140/154] Installing curl-0:8.6.0-3.fc4 100% | 47.9 MiB/s | 736.2 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1-4.fc40.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.1-4.fc40.i686 [141/154] Installing rpm-0:4.19.1-4.fc4 100% | 95.2 MiB/s | 2.4 MiB | 00m00s [142/154] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/154] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/154] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/154] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [146/154] Installing forge-srpm-macros- 100% | 37.7 MiB/s | 38.6 KiB | 00m00s [147/154] Installing go-srpm-macros-0:3 100% | 60.2 MiB/s | 61.6 KiB | 00m00s [148/154] Installing python-srpm-macros 100% | 50.1 MiB/s | 51.3 KiB | 00m00s [149/154] Installing redhat-rpm-config- 100% | 61.7 MiB/s | 189.6 KiB | 00m00s [150/154] Installing rpm-build-0:4.19.1 100% | 53.0 MiB/s | 162.9 KiB | 00m00s [151/154] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [152/154] Installing util-linux-0:2.40- 100% | 129.2 MiB/s | 3.5 MiB | 00m00s [153/154] Installing which-0:2.21-41.fc 100% | 39.6 MiB/s | 81.1 KiB | 00m00s [154/154] Installing info-0:7.1-2.fc40. 100% | 228.6 KiB/s | 360.8 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.1-4.fc40.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.1-4.fc40.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.i686 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.i686 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.i686 Warning: skipped PGP checks for 152 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.i686 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0-8.fc40.i686 authselect-1.5.0-3.fc40.i686 authselect-libs-1.5.0-3.fc40.i686 basesystem-11-20.fc40.noarch bash-5.2.26-2.fc40.i686 binutils-2.41-32.fc40.i686 binutils-gold-2.41-32.fc40.i686 bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.4-6.fc40.i686 coreutils-common-9.4-6.fc40.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240201-1.git9f501f3.fc40.noarch curl-8.6.0-3.fc40.i686 cyrus-sasl-lib-2.1.28-19.fc40.i686 debugedit-5.0-14.fc40.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20-2.fc40.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.190-6.fc40.i686 elfutils-debuginfod-client-0.190-6.fc40.i686 elfutils-default-yama-scope-0.190-6.fc40.noarch elfutils-libelf-0.190-6.fc40.i686 elfutils-libs-0.190-6.fc40.i686 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.30.noarch fedora-release-common-40-0.30.noarch fedora-release-identity-basic-40-0.30.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-3.fc40.i686 file-libs-5.45-3.fc40.i686 filesystem-3.18-8.fc40.i686 findutils-4.9.0-8.fc40.i686 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.2.0-3.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.1-8.fc40.i686 gdbm-1.23-6.fc40.i686 gdbm-libs-1.23-6.fc40.i686 ghc-srpm-macros-1.6.1-5.fc40.noarch glibc-2.38.9000-39.fc40.i686 glibc-common-2.38.9000-39.fc40.i686 glibc-gconv-extra-2.38.9000-39.fc40.i686 glibc-minimal-langpack-2.38.9000-39.fc40.i686 gmp-6.2.1-8.fc40.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.3.1-3.fc40.noarch grep-3.11-7.fc40.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-22.fc40.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.2-5.fc40.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.2-3.fc40.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40-0.1.fc40.i686 libbrotli-1.1.0-3.fc40.i686 libcap-2.69-3.fc40.i686 libcap-ng-0.8.4-4.fc40.i686 libcom_err-1.47.0-4.fc40.i686 libcurl-8.6.0-3.fc40.i686 libeconf-0.5.2-3.fc40.i686 libevent-2.1.12-11.fc40.i686 libfdisk-2.40-0.1.fc40.i686 libffi-3.4.4-7.fc40.i686 libgcc-14.0.1-0.4.fc40.i686 libgomp-14.0.1-0.4.fc40.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40-0.1.fc40.i686 libnghttp2-1.59.0-2.fc40.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-1.9.5-4.fc40.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-9.fc40.i686 libselinux-3.6-4.fc40.i686 libsemanage-3.6-3.fc40.i686 libsepol-3.6-3.fc40.i686 libsmartcols-2.40-0.1.fc40.i686 libssh-0.10.6-4.fc40.i686 libssh-config-0.10.6-4.fc40.noarch libstdc++-14.0.1-0.4.fc40.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc2.fc40.2.i686 libunistring-1.1-7.fc40.i686 libutempter-1.2.1-13.fc40.i686 libuuid-2.40-0.1.fc40.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.5-1.fc40.i686 libzstd-1.5.5-5.fc40.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-11.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-3.fc40.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.6-1.fc39.i686 openssl-libs-3.1.4-4.fc40.i686 p11-kit-0.25.3-4.fc40.i686 p11-kit-trust-0.25.3-4.fc40.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.0-1.fc40.i686 pam-libs-1.6.0-1.fc40.i686 patch-2.7.6-24.fc40.i686 pcre2-10.42-2.fc40.2.i686 pcre2-syntax-10.42-2.fc40.2.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-1.9.5-4.fc40.i686 pkgconf-m4-1.9.5-4.fc40.noarch pkgconf-pkg-config-1.9.5-4.fc40.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-7.fc40.noarch qt5-srpm-macros-5.15.12-3.fc40.noarch qt6-srpm-macros-6.6.1-5.fc40.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-282-1.fc40.noarch rpm-4.19.1-4.fc40.i686 rpm-build-4.19.1-4.fc40.i686 rpm-build-libs-4.19.1-4.fc40.i686 rpm-libs-4.19.1-4.fc40.i686 rpm-sequoia-1.6.0-2.fc40.i686 rust-srpm-macros-25.2-4.fc40.noarch sed-4.9-1.fc40.i686 setup-2.14.5-2.fc40.noarch shadow-utils-4.14.0-5.fc40.i686 sqlite-libs-3.45.1-2.fc40.i686 systemd-libs-255.3-1.fc40.i686 tar-1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40-0.1.fc40.i686 util-linux-core-2.40-0.1.fc40.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-5.4.6-1.fc40.i686 xz-libs-5.4.6-1.fc40.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.6-2.fc40.i686 zstd-1.5.5-5.fc40.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1707280462.751361/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-iwfkrmcd/ProDy/ProDy.spec) Config(child) 0 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-3.fc40.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1707280462.751361/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1707280462.751361/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1707280462.751361/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-4.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.11-3.fc40.x86_64 dnf5-plugins-5.1.11-3.fc40.x86_64 Finish: chroot init Start: build phase for ProDy-2.4.1-3.fc40.src.rpm Start: build setup for ProDy-2.4.1-3.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-3.fc40.src.rpm Updating and loading repositories: Copr repository 100% | 34.5 KiB/s | 1.5 KiB | 00m00s local 100% | 108.3 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc i686 14.0.1-0.4.fc40 local 100.8 MiB gcc-c++ i686 14.0.1-0.4.fc40 local 38.6 MiB python3-biopython i686 1.83-3.fc40 local 29.1 MiB python3-devel i686 3.12.1-4.fc40 local 1.2 MiB python3-matplotlib i686 3.8.2-4.fc40 local 20.2 MiB python3-nose noarch 1.3.7-45.fc40 local 1.2 MiB python3-numpy i686 1:1.26.2-4.fc40 local 36.8 MiB python3-scipy i686 1.11.3-6.fc40 local 64.7 MiB python3-setuptools noarch 69.0.3-2.fc40 local 7.1 MiB python3-urllib3 noarch 2.2.0-2.fc40 copr_base 950.4 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-12.fc40 local 192.7 KiB annobin-docs noarch 12.38-1.fc40 local 95.6 KiB annobin-plugin-gcc i686 12.38-1.fc40 local 965.8 KiB cairo i686 1.18.0-3.fc40 local 1.8 MiB cpp i686 14.0.1-0.4.fc40 local 35.3 MiB default-fonts-core-sans noarch 4.0-12.fc40 local 11.9 KiB dejavu-sans-fonts noarch 2.37-23.fc40 local 5.5 MiB expat i686 2.5.0-5.fc40 local 277.2 KiB flex i686 2.6.4-16.fc40 local 787.3 KiB flexiblas i686 3.4.1-3.fc40 local 46.7 KiB flexiblas-netlib i686 3.4.1-3.fc40 local 11.0 MiB flexiblas-openblas-openmp i686 3.4.1-3.fc40 local 26.6 KiB fontconfig i686 2.15.0-3.fc40 local 758.7 KiB fonts-filesystem noarch 1:2.0.5-14.fc40 local 0.0 B freetype i686 2.13.2-5.fc40 local 850.6 KiB fribidi i686 1.0.13-4.fc40 local 363.2 KiB gc i686 8.2.2-6.fc40 local 251.3 KiB gcc-plugin-annobin i686 14.0.1-0.4.fc40 local 55.8 KiB glib2 i686 2.79.1-1.fc40 local 14.8 MiB glibc-devel i686 2.38.9000-39.fc40 local 32.1 KiB glibc-headers-x86 noarch 2.38.9000-39.fc40 local 2.2 MiB gnutls i686 3.8.3-2.fc40 local 3.3 MiB google-noto-fonts-common noarch 20240101-1.fc40 local 17.4 KiB google-noto-sans-vf-fonts noarch 20240101-1.fc40 local 1.2 MiB graphite2 i686 1.3.14-15.fc40 local 194.4 KiB guile30 i686 3.0.7-12.fc40 local 47.4 MiB harfbuzz i686 8.3.0-5.fc40 local 2.7 MiB jbigkit-libs i686 2.1-29.fc40 local 112.1 KiB kernel-headers i686 6.8.0-0.rc3.26.fc40 local 6.2 MiB lcms2 i686 2.16-3.fc40 local 459.2 KiB libX11 i686 1.8.7-3.fc40 local 1.3 MiB libX11-common noarch 1.8.7-3.fc40 local 1.1 MiB libXau i686 1.0.11-6.fc40 local 62.1 KiB libXext i686 1.3.6-1.fc40 local 97.0 KiB libXft i686 2.3.8-6.fc40 local 163.6 KiB libXrender i686 0.9.11-6.fc40 local 53.3 KiB libasan i686 14.0.1-0.4.fc40 local 1.7 MiB libatomic i686 14.0.1-0.4.fc40 local 27.5 KiB libb2 i686 0.98.1-11.fc40 local 53.4 KiB libgfortran i686 14.0.1-0.4.fc40 local 2.9 MiB libimagequant i686 4.0.3-3.fc40 local 753.8 KiB libjpeg-turbo i686 3.0.2-1.fc40 local 836.9 KiB liblerc i686 4.0.0-6.fc40 local 638.9 KiB libmpc i686 1.3.1-5.fc40 local 168.0 KiB libpng i686 2:1.6.40-3.fc40 local 253.2 KiB libqhull_r i686 1:8.0.2-4.fc40 local 510.7 KiB libquadmath i686 14.0.1-0.4.fc40 local 513.2 KiB libraqm i686 0.8.0-7.fc40 local 23.9 KiB libstdc++-devel i686 14.0.1-0.4.fc40 local 14.2 MiB libtiff i686 4.6.0-2.fc40 local 1.2 MiB libubsan i686 14.0.1-0.4.fc40 local 538.6 KiB libwebp i686 1.3.2-4.fc40 local 830.2 KiB libxcb i686 1.16-4.fc40 local 1.1 MiB libxcrypt-devel i686 4.4.36-5.fc40 local 30.3 KiB libxslt i686 1.1.39-3.fc40 local 503.4 KiB m4 i686 1.4.19-9.fc40 local 596.2 KiB make i686 1:4.4.1-6.fc40 local 1.8 MiB mpdecimal i686 2.5.1-9.fc40 local 200.1 KiB nettle i686 3.9.1-6.fc40 local 780.2 KiB openblas i686 0.3.26-1.fc40 local 96.0 KiB openblas-openmp i686 0.3.26-1.fc40 local 22.0 MiB openjpeg2 i686 2.5.0-7.fc40 local 468.6 KiB pixman i686 0.43.0-3.fc40 local 753.7 KiB pyproject-rpm-macros noarch 1.12.0-1.fc40 local 98.8 KiB python-pip-wheel noarch 23.3.2-1.fc40 local 1.5 MiB python-rpm-macros noarch 3.12-7.fc40 local 22.1 KiB python3 i686 3.12.1-4.fc40 local 31.0 KiB python3-appdirs noarch 1.4.4-13.fc40 local 69.0 KiB python3-brotli i686 1.1.0-3.fc40 local 854.8 KiB python3-cairo i686 1.25.1-3.fc40 local 485.9 KiB python3-charset-normalizer noarch 3.3.2-3.fc40 local 312.7 KiB python3-contourpy i686 1.2.0-3.fc40 local 773.9 KiB python3-cycler noarch 0.11.0-11.fc40 local 38.2 KiB python3-dateutil noarch 1:2.8.2-13.fc40 local 877.8 KiB python3-fonttools i686 4.47.2-4.fc40 local 18.0 MiB python3-fs noarch 2.4.16-7.fc40 local 1.3 MiB python3-idna noarch 3.6-3.fc40 local 502.3 KiB python3-kiwisolver i686 1.4.5-3.fc40 local 160.0 KiB python3-libs i686 3.12.1-4.fc40 local 40.2 MiB python3-lxml i686 4.9.4-1.fc40 local 5.5 MiB python3-matplotlib-data noarch 3.8.2-4.fc40 local 740.9 KiB python3-matplotlib-data-fonts noarch 3.8.2-4.fc40 local 7.9 MiB python3-matplotlib-tk i686 3.8.2-4.fc40 local 118.6 KiB python3-numpy-f2py i686 1:1.26.2-4.fc40 local 1.9 MiB python3-olefile noarch 0.47-3.fc40 local 343.2 KiB python3-packaging noarch 23.2-4.fc40 local 421.1 KiB python3-pillow i686 10.2.0-3.fc40 local 3.2 MiB python3-pillow-tk i686 10.2.0-3.fc40 local 53.6 KiB python3-pooch noarch 1.5.2-15.fc40 local 548.7 KiB python3-pyparsing noarch 3.1.1-3.fc40 local 1.0 MiB python3-requests noarch 2.31.0-3.fc40 local 462.4 KiB python3-rpm-generators noarch 14-10.fc40 local 81.7 KiB python3-rpm-macros noarch 3.12-7.fc40 local 6.4 KiB python3-six noarch 1.16.0-14.fc40 local 117.7 KiB python3-tkinter i686 3.12.1-4.fc40 local 2.2 MiB tcl i686 1:8.6.13-2.fc40 local 4.3 MiB tk i686 1:8.6.13-3.fc40 local 3.7 MiB tzdata noarch 2024a-2.fc40 local 1.6 MiB xml-common noarch 0.6.3-63.fc40 local 78.4 KiB Transaction Summary: Installing: 109 packages Total size of inbound packages is 163 MiB. Need to download 163 MiB. After this operation 593 MiB will be used (install 593 MiB, remove 0 B). [ 1/109] gcc-c++-0:14.0.1-0.4.fc40.i68 100% | 27.6 MiB/s | 14.2 MiB | 00m01s [ 2/109] python3-devel-0:3.12.1-4.fc40 100% | 12.7 MiB/s | 273.8 KiB | 00m00s [ 3/109] gcc-0:14.0.1-0.4.fc40.i686 100% | 56.7 MiB/s | 36.5 MiB | 00m01s [ 4/109] python3-nose-0:1.3.7-45.fc40. 100% | 8.2 MiB/s | 320.9 KiB | 00m00s [ 5/109] python3-matplotlib-0:3.8.2-4. 100% | 23.0 MiB/s | 4.3 MiB | 00m00s [ 6/109] python3-numpy-1:1.26.2-4.fc40 100% | 54.8 MiB/s | 6.8 MiB | 00m00s [ 7/109] python3-setuptools-0:69.0.3-2 100% | 40.4 MiB/s | 1.4 MiB | 00m00s [ 8/109] python3-urllib3-0:2.2.0-2.fc4 100% | 3.4 MiB/s | 242.1 KiB | 00m00s [ 9/109] cpp-0:14.0.1-0.4.fc40.i686 100% | 59.4 MiB/s | 11.9 MiB | 00m00s [ 10/109] glibc-devel-0:2.38.9000-39.fc 100% | 9.6 MiB/s | 108.6 KiB | 00m00s [ 11/109] libasan-0:14.0.1-0.4.fc40.i68 100% | 31.4 MiB/s | 514.8 KiB | 00m00s [ 12/109] libatomic-0:14.0.1-0.4.fc40.i 100% | 2.0 MiB/s | 20.0 KiB | 00m00s [ 13/109] libmpc-0:1.3.1-5.fc40.i686 100% | 6.3 MiB/s | 77.6 KiB | 00m00s [ 14/109] libubsan-0:14.0.1-0.4.fc40.i6 100% | 17.2 MiB/s | 228.8 KiB | 00m00s [ 15/109] make-1:4.4.1-6.fc40.i686 100% | 28.8 MiB/s | 589.4 KiB | 00m00s [ 16/109] python3-scipy-0:1.11.3-6.fc40 100% | 31.2 MiB/s | 16.1 MiB | 00m01s [ 17/109] libstdc++-devel-0:14.0.1-0.4. 100% | 38.2 MiB/s | 2.6 MiB | 00m00s [ 18/109] python3-0:3.12.1-4.fc40.i686 100% | 2.6 MiB/s | 26.7 KiB | 00m00s [ 19/109] flex-0:2.6.4-16.fc40.i686 100% | 4.7 MiB/s | 284.6 KiB | 00m00s [ 20/109] dejavu-sans-fonts-0:2.37-23.f 100% | 26.0 MiB/s | 1.3 MiB | 00m00s [ 21/109] freetype-0:2.13.2-5.fc40.i686 100% | 14.6 MiB/s | 419.8 KiB | 00m00s [ 22/109] libqhull_r-1:8.0.2-4.fc40.i68 100% | 4.2 MiB/s | 215.0 KiB | 00m00s [ 23/109] python3-cairo-0:1.25.1-3.fc40 100% | 6.3 MiB/s | 130.0 KiB | 00m00s [ 24/109] python3-contourpy-0:1.2.0-3.f 100% | 13.5 MiB/s | 263.4 KiB | 00m00s [ 25/109] python3-cycler-0:0.11.0-11.fc 100% | 1.6 MiB/s | 20.9 KiB | 00m00s [ 26/109] python3-libs-0:3.12.1-4.fc40. 100% | 41.6 MiB/s | 9.0 MiB | 00m00s [ 27/109] python3-dateutil-1:2.8.2-13.f 100% | 21.0 MiB/s | 344.7 KiB | 00m00s [ 28/109] python3-kiwisolver-0:1.4.5-3. 100% | 4.8 MiB/s | 73.1 KiB | 00m00s [ 29/109] python3-matplotlib-data-0:3.8 100% | 9.7 MiB/s | 508.0 KiB | 00m00s [ 30/109] python3-matplotlib-tk-0:3.8.2 100% | 4.3 MiB/s | 48.3 KiB | 00m00s [ 31/109] python3-packaging-0:23.2-4.fc 100% | 9.4 MiB/s | 115.5 KiB | 00m00s [ 32/109] python3-biopython-0:1.83-3.fc 100% | 5.6 MiB/s | 9.0 MiB | 00m02s [ 33/109] python3-fonttools-0:4.47.2-4. 100% | 21.7 MiB/s | 2.8 MiB | 00m00s [ 34/109] python3-pillow-0:10.2.0-3.fc4 100% | 25.1 MiB/s | 898.4 KiB | 00m00s [ 35/109] python3-pyparsing-0:3.1.1-3.f 100% | 5.8 MiB/s | 261.1 KiB | 00m00s [ 36/109] libgfortran-0:14.0.1-0.4.fc40 100% | 24.7 MiB/s | 833.8 KiB | 00m00s [ 37/109] python3-pooch-0:1.5.2-15.fc40 100% | 7.4 MiB/s | 113.5 KiB | 00m00s [ 38/109] python3-idna-0:3.6-3.fc40.noa 100% | 7.0 MiB/s | 100.8 KiB | 00m00s [ 39/109] python3-numpy-f2py-1:1.26.2-4 100% | 6.3 MiB/s | 414.8 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00m00s [ 53/109] cairo-0:1.18.0-3.fc40.i686 100% | 24.7 MiB/s | 757.3 KiB | 00m00s [ 54/109] python3-six-0:1.16.0-14.fc40. 100% | 2.1 MiB/s | 40.9 KiB | 00m00s [ 55/109] python3-brotli-0:1.1.0-3.fc40 100% | 17.6 MiB/s | 341.6 KiB | 00m00s [ 56/109] python3-fs-0:2.4.16-7.fc40.no 100% | 10.6 MiB/s | 272.4 KiB | 00m00s [ 57/109] python3-lxml-0:4.9.4-1.fc40.i 100% | 29.3 MiB/s | 1.4 MiB | 00m00s [ 58/109] python3-pillow-tk-0:10.2.0-3. 100% | 2.7 MiB/s | 29.9 KiB | 00m00s [ 59/109] python3-tkinter-0:3.12.1-4.fc 100% | 19.8 MiB/s | 385.1 KiB | 00m00s [ 60/109] lcms2-0:2.16-3.fc40.i686 100% | 13.8 MiB/s | 197.5 KiB | 00m00s [ 61/109] harfbuzz-0:8.3.0-5.fc40.i686 100% | 5.6 MiB/s | 1.0 MiB | 00m00s [ 62/109] libimagequant-0:4.0.3-3.fc40. 100% | 15.4 MiB/s | 332.0 KiB | 00m00s [ 63/109] python3-matplotlib-data-fonts 100% | 18.9 MiB/s | 2.3 MiB | 00m00s [ 64/109] libraqm-0:0.8.0-7.fc40.i686 100% | 805.5 KiB/s | 20.1 KiB | 00m00s [ 65/109] libtiff-0:4.6.0-2.fc40.i686 100% | 15.7 MiB/s | 370.8 KiB | 00m00s [ 66/109] libjpeg-turbo-0:3.0.2-1.fc40. 100% | 6.4 MiB/s | 256.2 KiB | 00m00s [ 67/109] libxcb-0:1.16-4.fc40.i686 100% | 11.3 MiB/s | 253.5 KiB | 00m00s [ 68/109] openjpeg2-0:2.5.0-7.fc40.i686 100% | 5.8 MiB/s | 201.2 KiB | 00m00s [ 69/109] python3-olefile-0:0.47-3.fc40 100% | 4.2 MiB/s | 72.9 KiB | 00m00s [ 70/109] libwebp-0:1.3.2-4.fc40.i686 100% | 5.6 MiB/s | 296.5 KiB | 00m00s [ 71/109] flexiblas-0:3.4.1-3.fc40.i686 100% | 1.9 MiB/s | 24.9 KiB | 00m00s [ 72/109] flexiblas-openblas-openmp-0:3 100% | 1.3 MiB/s | 17.8 KiB | 00m00s [ 73/109] python3-appdirs-0:1.4.4-13.fc 100% | 1.3 MiB/s | 23.0 KiB | 00m00s [ 74/109] libquadmath-0:14.0.1-0.4.fc40 100% | 9.9 MiB/s | 232.2 KiB | 00m00s [ 75/109] python3-requests-0:2.31.0-3.f 100% | 8.6 MiB/s | 140.8 KiB | 00m00s [ 76/109] graphite2-0:1.3.14-15.fc40.i6 100% | 5.0 MiB/s | 96.5 KiB | 00m00s [ 77/109] gc-0:8.2.2-6.fc40.i686 100% | 4.4 MiB/s | 112.2 KiB | 00m00s [ 78/109] fontconfig-0:2.15.0-3.fc40.i6 100% | 12.9 MiB/s | 264.2 KiB | 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Finish: build setup for ProDy-2.4.1-3.fc40.src.rpm Start: rpmbuild ProDy-2.4.1-3.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1705881600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.tOGCqi + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + rm -rf /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.NU0w2u + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-i686-cpython-312 creating build/lib.linux-i686-cpython-312/prody copying prody/__init__.py -> build/lib.linux-i686-cpython-312/prody creating build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/select.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-i686-cpython-312/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-i686-cpython-312/prody/atomic creating build/lib.linux-i686-cpython-312/prody/database copying prody/database/uniprot.py -> build/lib.linux-i686-cpython-312/prody/database copying prody/database/quartataweb.py -> build/lib.linux-i686-cpython-312/prody/database copying prody/database/pfam.py -> build/lib.linux-i686-cpython-312/prody/database copying prody/database/goa.py -> build/lib.linux-i686-cpython-312/prody/database copying prody/database/dali.py -> build/lib.linux-i686-cpython-312/prody/database copying prody/database/cath.py -> build/lib.linux-i686-cpython-312/prody/database copying prody/database/__init__.py -> build/lib.linux-i686-cpython-312/prody/database creating build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-i686-cpython-312/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-i686-cpython-312/prody/dynamics creating build/lib.linux-i686-cpython-312/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-i686-cpython-312/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-i686-cpython-312/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-i686-cpython-312/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-i686-cpython-312/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-i686-cpython-312/prody/ensemble creating build/lib.linux-i686-cpython-312/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-i686-cpython-312/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-i686-cpython-312/prody/kdtree creating build/lib.linux-i686-cpython-312/prody/measure copying prody/measure/transform.py -> build/lib.linux-i686-cpython-312/prody/measure copying prody/measure/measure.py -> build/lib.linux-i686-cpython-312/prody/measure copying prody/measure/contacts.py -> build/lib.linux-i686-cpython-312/prody/measure copying prody/measure/__init__.py -> build/lib.linux-i686-cpython-312/prody/measure creating build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/header.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-i686-cpython-312/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-i686-cpython-312/prody/proteins creating build/lib.linux-i686-cpython-312/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-i686-cpython-312/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-i686-cpython-312/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-i686-cpython-312/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-i686-cpython-312/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-i686-cpython-312/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-i686-cpython-312/prody/sequence creating build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-i686-cpython-312/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-i686-cpython-312/prody/trajectory creating build/lib.linux-i686-cpython-312/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-i686-cpython-312/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-i686-cpython-312/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-i686-cpython-312/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-i686-cpython-312/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-i686-cpython-312/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-i686-cpython-312/prody/chromatin creating build/lib.linux-i686-cpython-312/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-i686-cpython-312/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-i686-cpython-312/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-i686-cpython-312/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-i686-cpython-312/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-i686-cpython-312/prody/compounds creating build/lib.linux-i686-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-i686-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-i686-cpython-312/prody/domain_decomposition creating build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-i686-cpython-312/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-i686-cpython-312/prody/utilities creating build/lib.linux-i686-cpython-312/prody/apps copying prody/apps/apptools.py -> build/lib.linux-i686-cpython-312/prody/apps copying prody/apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/apps creating build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps creating build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps creating build/lib.linux-i686-cpython-312/prody/tests copying prody/tests/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests creating build/lib.linux-i686-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-i686-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-i686-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-i686-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-i686-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-i686-cpython-312/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/apps creating build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic creating build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/datafiles creating build/lib.linux-i686-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics creating build/lib.linux-i686-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble creating build/lib.linux-i686-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-i686-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/kdtree creating build/lib.linux-i686-cpython-312/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-i686-cpython-312/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-i686-cpython-312/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-i686-cpython-312/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/measure creating build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins creating build/lib.linux-i686-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence creating build/lib.linux-i686-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-i686-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-i686-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/trajectory creating build/lib.linux-i686-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities creating build/lib.linux-i686-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-i686-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-i686-cpython-312/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-i686-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-i686-cpython-312/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/prody creating build/temp.linux-i686-cpython-312/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-i686-cpython-312/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/dynamics/rtbtools.cpython-312-i386-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-i686-cpython-312/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/dynamics/smtools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/dynamics/smtools.cpython-312-i386-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-i686-cpython-312/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-i686-cpython-312/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/sequence/msatools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/sequence/msatools.cpython-312-i386-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-i686-cpython-312/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/sequence/msaio.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/sequence/msaio.cpython-312-i386-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-i686-cpython-312/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/sequence/seqtools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/sequence/seqtools.cpython-312-i386-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-i686-cpython-312/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-i686-cpython-312/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-i686-cpython-312/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/kdtree/KDTree.o build/temp.linux-i686-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/kdtree/_CKDTree.cpython-312-i386-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-i686-cpython-312/prody/proteins creating build/temp.linux-i686-cpython-312/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-i686-cpython-312/prody/proteins/ccealign/ccealignmodule.o g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/proteins/ccealign.cpython-312-i386-linux-gnu.so + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SIFN1R + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 ++ dirname /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12 creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-312/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-312/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-312/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-312/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-312/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-312/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-312/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-312/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-312/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-312/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-312/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-312/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-312/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-312/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-312/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-312/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps copying build/lib.linux-i686-cpython-312/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-312/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-312/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-312/prody/utilities/TreeConstruction.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/catchall.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/drawtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/eigtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/laptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/legacy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/seqtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities copying build/lib.linux-i686-cpython-312/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-312/prody/domain_decomposition/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-312/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds copying build/lib.linux-i686-cpython-312/prody/compounds/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds copying build/lib.linux-i686-cpython-312/prody/compounds/bird.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds copying build/lib.linux-i686-cpython-312/prody/compounds/ccd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds copying build/lib.linux-i686-cpython-312/prody/compounds/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds copying build/lib.linux-i686-cpython-312/prody/compounds/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-312/prody/chromatin/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-312/prody/chromatin/cluster.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-312/prody/chromatin/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-312/prody/chromatin/hic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-312/prody/chromatin/norm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-312/prody/chromatin/straw.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-312/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/seqtools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/msaio.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/msatools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence copying build/lib.linux-i686-cpython-312/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/ccealign.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/cifheader.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/emdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/fixer.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/starfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/waterbridges.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins copying build/lib.linux-i686-cpython-312/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure copying build/lib.linux-i686-cpython-312/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure copying build/lib.linux-i686-cpython-312/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure copying build/lib.linux-i686-cpython-312/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure copying build/lib.linux-i686-cpython-312/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-312/prody/kdtree/_CKDTree.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-312/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-312/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-312/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-312/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-312/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-312/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-312/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/smtools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/rtbtools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/adaptive.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/bildfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/entropy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/essa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/exgnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/imanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/mechstiff.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/perturb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-312/prody/dynamics/vmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/cath.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/dali.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/goa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/quartataweb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database copying build/lib.linux-i686-cpython-312/prody/database/uniprot.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database creating /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/acceptor.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/angle.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/crossterm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/dihedral.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/donor.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/improper.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/nbexclusion.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic copying build/lib.linux-i686-cpython-312/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/fixer.py to fixer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/measure.py to measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/prody/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmpu6wdldh8.py' /usr/bin/python3 /tmp/tmpu6wdldh8.py /usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmpu6wdldh8.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12/site-packages/ProDy-2.4.1-py3.12.egg-info running install_scripts Installing evol script to /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin Installing prody script to /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + rm -rfv /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + rm -f /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin/evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.12-prody + cp -pr ./evol ./python3.12-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.12-prody ./python3.12-evol + for i in prody-3.12 + touch -r ./python3.12-prody prody-3.12 + install -p prody-3.12 /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + install -p ./prody /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + install -p ./python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + ln -sf /usr/bin/python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin/prody-3.12 + for i in evol-3.12 + touch -r ./python3.12-evol evol-3.12 + install -p evol-3.12 /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + install -p ./evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + install -p ./python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin + ln -sf /usr/bin/python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/bin/evol-3.12 + cd .. + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.1-3.fc40 --unique-debug-suffix -2.4.1-3.fc40.i386 --unique-debug-src-base ProDy-2.4.1-3.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-3.fc40.i386 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/debug/usr/lib/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/lib/python3.12 using python3.12 /usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: python3-ProDy-2.4.1-3.fc40.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Xcp263 + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/share/doc/python3-ProDy + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1/README.rst /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.O7MBWM + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/share/licenses/python3-ProDy + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol warning: absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Provides: ProDy = 0:2.4.1-3.fc40 python-ProDy = 2.4.1-3.fc40 python3-ProDy = 2.4.1-3.fc40 python3-ProDy(x86-32) = 2.4.1-3.fc40 python3.12-ProDy = 2.4.1-3.fc40 python3.12dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(biopython) python3.12dist(numpy) >= 1.10 python3.12dist(pyparsing) python3.12dist(scipy) python3.12dist(setuptools) Obsoletes: python-ProDy < 2.4.1-3.fc40 Processing files: ProDy-debugsource-2.4.1-3.fc40.i686 Provides: ProDy-debugsource = 2.4.1-3.fc40 ProDy-debugsource(x86-32) = 2.4.1-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-3.fc40.i686 Provides: debuginfo(build-id) = 50c9ed63c7e3601fa93cc3bd5728225639935bfc debuginfo(build-id) = 5df369eb1fd9b85cfb113bc2fa4976931b797e28 debuginfo(build-id) = 6691171a1285acfa4c0a903689976340fd3ece8e debuginfo(build-id) = 66a2d55047785aa40d2a1fd07249025ad2f92531 debuginfo(build-id) = b80f45f97927db3e17a27e4c94adf86a4cf3747f debuginfo(build-id) = e15fe6e9d2f8e6cb21a8a983e9fcab6d7576a06e debuginfo(build-id) = f590af11fa97c717886c5893160b3597f3825e53 python-ProDy-debuginfo = 2.4.1-3.fc40 python3-ProDy-debuginfo = 2.4.1-3.fc40 python3-ProDy-debuginfo(x86-32) = 2.4.1-3.fc40 python3.12-ProDy-debuginfo = 2.4.1-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-32) = 2.4.1-3.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-3.fc40.i686.rpm Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-3.fc40.i686.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-3.fc40.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.IzsyyF + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-2.4.1-3.fc40.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.nDrLEQ + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + rm -rf ProDy-2.4.1 ProDy-2.4.1.gemspec + RPM_EC=0 RPM build warnings: ++ jobs -p + exit 0 absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Finish: rpmbuild ProDy-2.4.1-3.fc40.src.rpm Finish: build phase for ProDy-2.4.1-3.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1707280462.751361/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-3.fc40.src.rpm) Config(child) 1 minutes 41 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "i686" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "i686" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "i686" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "3.fc40", "arch": "src" } ] } RPMResults finished