/**
 * Deep Research side panel — open/close, form, job rendering, library.
 */
import * as jobs from './jobs.js?v=20260630researchthumb';
import themeModule from '../theme.js';
import createResearchSynapse from '../researchSynapse.js';
import spinnerModule from '../spinner.js';
import { sortModelIds } from '../modelSort.js';

// Rotating research textarea placeholders — pick one at random each
// time the panel is rendered so the example keeps feeling fresh.
const _RESEARCH_HINTS = [
  "e.g. Trace Odysseus's ten-year journey home from Troy — every island, monster, and detour, and why each one cost him",
  "e.g. Compare Rust and Go for building a high-throughput web API in 2026",
  "e.g. Fact-check whether honey actually never spoils",
  "e.g. How to roast a duck so the skin stays crispy",
  "e.g. The collapse of Bronze Age civilizations — leading theories and the evidence behind each",
  "e.g. Best M.2 NVMe SSDs under $200 for a home AI workstation",
  "e.g. Why do cats knead with their paws? Cover the leading behavioural explanations",
  "e.g. Side effects and benefits of long-term creatine supplementation",
  "e.g. How does end-to-end encryption work in Signal, step by step",
  "e.g. The history of the printing press in East Asia, 700 CE → 1600 CE",
];
function _pickResearchHint() {
  const i = Math.floor(Math.random() * _RESEARCH_HINTS.length);
  // Escape double-quotes so we can safely splice into a placeholder="…" attribute.
  return _RESEARCH_HINTS[i].replace(/"/g, '&quot;');
}

// jobId -> { synapse, status } — survives across _renderJobs() rebuilds so
// the SVG keeps its accumulated nodes/edges between progress events.
const _jobSynapses = new Map();
// Which foldable job sections ('active' / 'past') the user has collapsed — kept
// across re-renders so the panel doesn't re-expand on every job-state change.
const _collapsedSections = new Set();

// Persisted preference to minimize (hide) the per-job synapse "tree" visual.
// Stored globally so it survives the frequent _renderJobs() card rebuilds and
// applies to every running job.
const _SYNAPSE_MIN_KEY = 'research.synapseMinimized';
let _synapseMinimized = (() => { try { return localStorage.getItem(_SYNAPSE_MIN_KEY) === '1'; } catch { return false; } })();
const _vizCollapseIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round" stroke-linejoin="round"><polyline points="18 15 12 9 6 15"/></svg>';
const _vizExpandIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round" stroke-linejoin="round"><polyline points="6 9 12 15 18 9"/></svg>';
function _toggleSynapseMinimized() {
  _synapseMinimized = !_synapseMinimized;
  try { localStorage.setItem(_SYNAPSE_MIN_KEY, _synapseMinimized ? '1' : '0'); } catch {}
  // Apply live to all rendered cards without forcing a full rebuild.
  document.querySelectorAll('.research-job-synapse-host')
    .forEach(h => h.classList.toggle('synapse-collapsed', _synapseMinimized));
  document.querySelectorAll('.research-synapse-toggle').forEach(b => {
    b.classList.toggle('active', _synapseMinimized);
    b.title = _synapseMinimized ? 'Show visualization' : 'Minimize visualization';
    b.innerHTML = _synapseMinimized ? _vizExpandIcon : _vizCollapseIcon;
  });
}

let _open = false;
let _onDocKeydown = null;
let _apiBase = '';
let _endpoints = [];
let _expandedJobId = null;
let _markdownModule = null;
let _sessionModule = null;
let _settingsCollapsed = false;
const _SETTINGS_KEY = 'odysseus-research-settings';
const _COLLAPSE_KEY = 'odysseus-research-settings-collapsed';

try { _settingsCollapsed = localStorage.getItem(_COLLAPSE_KEY) === '1'; } catch {}

function _saveSettingsToStorage() {
  try {
    localStorage.setItem(_SETTINGS_KEY, JSON.stringify({
      max_rounds: document.getElementById('research-rounds')?.value || '0',
      search_provider: document.getElementById('research-search-provider')?.value || '',
      endpoint_id: document.getElementById('research-endpoint')?.value || '',
      model: document.getElementById('research-model')?.value || '',
      category: document.getElementById('research-category')?.value || '',
    }));
  } catch {}
}

function _loadSettingsFromStorage() {
  try {
    const raw = localStorage.getItem(_SETTINGS_KEY);
    return raw ? JSON.parse(raw) : null;
  } catch { return null; }
}

function _showBadge() {
  const btn = document.getElementById('tool-research-btn');
  if (!btn || btn.querySelector('.research-badge')) return;
  const dot = document.createElement('span');
  dot.className = 'research-badge';
  btn.appendChild(dot);
}

function _clearBadge() {
  const dot = document.querySelector('#tool-research-btn .research-badge');
  if (dot) dot.remove();
}

// Live sidebar/rail feedback — mirrors the cookbook pattern. While
// research jobs are running, the rail button pulses; errors flag red;
// nothing running clears it. Panel-independent so it works with the
// modal closed. Called from _renderJobs on every job-state change.
function _syncResearchRail() {
  let running = 0, errored = 0, runningJob = null;
  try {
    for (const j of jobs.getJobs()) {
      if (j.status === 'running' || j.status === 'queued') {
        running++;
        if (j.status === 'running' && !runningJob) runningJob = j;
      } else if (j.status === 'error') errored++;
    }
  } catch { return; }
  const railBtn = document.getElementById('rail-research');
  const toolBtn = document.getElementById('tool-research-btn');
  const active = running > 0 || errored > 0;
  // Shared flag so sessions.js:_updateRailNotifs (which lights the same
  // rail button for INLINE research mode) ORs with us instead of
  // clobbering — otherwise a session re-render would clear our dot.
  window._researchJobsActive = active;
  if (railBtn) {
    railBtn.classList.remove('rail-notify', 'rail-notify-success', 'rail-notify-error', 'research-notif-active');
    if (active) {
      railBtn.classList.add('rail-notify', errored ? 'rail-notify-error' : 'rail-notify-success', 'research-notif-active');
    }
  }
  if (toolBtn) {
    toolBtn.classList.toggle('research-notif-active', active);
    toolBtn.style.opacity = active ? '1' : '';
    // Sidebar feedback while running — a small pulsing dot + round text,
    // same style as Cookbook's running indicator (no glow).
    let wrap = toolBtn.querySelector('.research-sb-running');
    if (running > 0) {
      if (!wrap) {
        wrap = document.createElement('span');
        wrap.className = 'research-sb-running';
        wrap.innerHTML = '<span class="research-sb-status"></span><span class="research-sb-dot"></span>';
        toolBtn.appendChild(wrap);
      }
      const round = runningJob && runningJob.progress && runningJob.progress.round;
      // Just the round as "R1", "R2", … (empty until the first round lands).
      // Only update when we actually have a round — don't blank it out on
      // progress ticks that lack one, or it flickers on/off between rounds.
      if (round) wrap.querySelector('.research-sb-status').textContent = `R${round}`;
    } else if (wrap) {
      wrap.remove();
    }
  }
  // Orbiting edge animation: faster when a job is running, slower while idle
  // (ambient). The rAF loop in _ensureOrbit drives --research-orbit-angle on
  // the pane element — CSS-only @property animation silently no-op'd in some
  // browsers, so JS drives it for universal compatibility.
  _orbitSpeedDegPerSec = running > 0 ? 60 : 22;  // 6s/rev vs ~16s/rev
  _ensureOrbit();
  if (window._syncRailDynamic) window._syncRailDynamic();
}

// ── Orbit-angle rAF driver ─────────────────────────────────────
// Universally-supported alternative to a CSS @property angle animation.
// Walks --research-orbit-angle on the #research-pane element every frame
// while the panel is open. Stops itself when the pane is gone.
let _orbitRAF = null;
let _orbitAngle = 0;
let _orbitLastTs = 0;
let _orbitSpeedDegPerSec = 22;  // idle ambient default
function _ensureOrbit() {
  if (_orbitRAF) return;
  _orbitLastTs = 0;
  const tick = (ts) => {
    const pane = document.getElementById('research-pane');
    if (!pane) { _orbitRAF = null; return; }  // panel closed → stop loop
    if (_orbitLastTs) {
      const dt = (ts - _orbitLastTs) / 1000;
      _orbitAngle = (_orbitAngle + _orbitSpeedDegPerSec * dt) % 360;
      pane.style.setProperty('--research-orbit-angle', _orbitAngle.toFixed(2) + 'deg');
    }
    _orbitLastTs = ts;
    _orbitRAF = requestAnimationFrame(tick);
  };
  _orbitRAF = requestAnimationFrame(tick);
}

/** Fetch the count of saved research items and populate the header chip. */
async function _updateResearchCount() {
  const el = document.getElementById('research-stats');
  if (!el) return;
  try {
    const res = await fetch('/api/research/library?limit=1', { credentials: 'same-origin' });
    if (!res.ok) return;
    const data = await res.json();
    const n = data.total || 0;
    el.textContent = n + (n === 1 ? ' research' : ' research');
  } catch {}
}

const _searchIcon = '<svg width="14" height="14" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2"><circle cx="11" cy="11" r="8"/><path d="M21 21l-4.35-4.35"/><line x1="11" y1="8" x2="11" y2="14"/><line x1="8" y1="11" x2="14" y2="11"/></svg>';
const _closeIcon = '<svg width="18" height="18" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round" stroke-linejoin="round"><polyline points="6 9 12 15 18 9"/></svg>';
const _playIcon = '<svg width="14" height="14" viewBox="0 0 24 24" fill="currentColor"><polygon points="5,3 19,12 5,21"/></svg>';
const _cancelIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round" stroke-linejoin="round"><line x1="18" y1="6" x2="6" y2="18"/><line x1="6" y1="6" x2="18" y2="18"/></svg>';
const _trashIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><polyline points="3 6 5 6 21 6"/><path d="M19 6v14a2 2 0 01-2 2H7a2 2 0 01-2-2V6m3 0V4a2 2 0 012-2h4a2 2 0 012 2v2"/></svg>';
const _externalIcon = '<svg width="11" height="11" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M18 13v6a2 2 0 01-2 2H5a2 2 0 01-2-2V8a2 2 0 012-2h6"/><polyline points="15 3 21 3 21 9"/><line x1="10" y1="14" x2="21" y2="3"/></svg>';
const _copyIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><rect x="9" y="9" width="13" height="13" rx="2"/><path d="M5 15H4a2 2 0 01-2-2V4a2 2 0 012-2h9a2 2 0 012 2v1"/></svg>';
const _retryIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><polyline points="23 4 23 10 17 10"/><path d="M20.49 15a9 9 0 11-2.12-9.36L23 10"/></svg>';
const _chevronIcon = '<svg width="10" height="10" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round" stroke-linejoin="round"><polyline points="6 9 12 15 18 9"/></svg>';
const _editIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M11 4H4a2 2 0 0 0-2 2v14a2 2 0 0 0 2 2h14a2 2 0 0 0 2-2v-7"/><path d="M18.5 2.5a2.121 2.121 0 0 1 3 3L12 15l-4 1 1-4 9.5-9.5z"/></svg>';
const _chatIcon = '<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M21 15a2 2 0 0 1-2 2H7l-4 4V5a2 2 0 0 1 2-2h14a2 2 0 0 1 2 2z"/></svg>';

export function init(apiBase, markdownMod, sessionMod) {
  _apiBase = apiBase;
  _markdownModule = markdownMod;
  _sessionModule = sessionMod;
  jobs.init(apiBase);
  jobs.setRenderCallback(_renderJobs);
  jobs.onComplete(() => { if (!_open) _showBadge(); });
}

export function isOpen() { return _open; }
export function toggle() {
  if (_open) {
    // If minimized, restore instead of closing
    const overlay = document.getElementById('research-overlay');
    if (overlay && overlay.style.display === 'none') {
      overlay.style.display = '';
      const btn = document.getElementById('tool-research-btn');
      if (btn) btn.classList.remove('minimized');
      return;
    }
    closePanel();
  } else {
    openPanel();
  }
}

export function openPanel(focusJobId) {
  if (_open) {
    const overlay = document.getElementById('research-overlay');
    if (overlay && overlay.style.display === 'none') {
      overlay.style.display = '';
      const btn = document.getElementById('tool-research-btn');
      if (btn) btn.classList.remove('minimized');
    }
    document.body.classList.add('research-panel-view');
    if (focusJobId) _focusJob(focusJobId);
    return;
  }
  _open = true;

  const container = document.getElementById('chat-container');
  if (!container) return;

  document.body.classList.add('research-panel-view');
  const btn = document.getElementById('tool-research-btn');
  if (btn) btn.classList.add('active');

  const overlay = document.createElement('div');
  overlay.id = 'research-overlay';
  overlay.className = 'modal research-overlay';

  // Match doclib/gallery/calendar modal sizing exactly so research feels like
  // the rest of the modal family (centered, ~640px, 85vh).
  const pane = document.createElement('div');
  pane.id = 'research-pane';
  pane.className = 'modal-content doclib-modal-content research-pane';
  // Mobile: full-screen so the content has room and the jobs list can scroll
  // inside it. Desktop: centered ~640px / 85vh modal like the rest.
  pane.style.cssText = (window.innerWidth <= 768)
    ? 'width:100vw;max-width:100vw;height:90dvh;max-height:90dvh;border-radius:14px 14px 0 0;background:var(--bg);'
    : 'width:min(640px, 92vw);max-height:85vh;background:var(--bg);';
  pane.innerHTML = _buildPanelHTML();

  overlay.appendChild(pane);
  document.body.appendChild(overlay);

  overlay.addEventListener('click', (e) => {
    if (e.target === overlay) closePanel();
  });

  // Document-level ESC handler — overlay-only listener never fired because
  // overlay isn't focused. Tracked in module scope so closePanel can detach.
  _onDocKeydown = (e) => {
    if (e.key === 'Escape' && _open) {
      e.preventDefault();
      closePanel();
    }
  };
  document.addEventListener('keydown', _onDocKeydown);

  // Make the pane draggable by its header — same pattern as Library/Calendar.
  const paneHeader = pane.querySelector('.research-pane-header');
  if (themeModule && themeModule.makeDraggable && paneHeader) {
    themeModule.makeDraggable(pane, paneHeader);
  }

  _wireEvents(pane);
  _loadEndpoints().then(_restoreSavedSettings);
  _clearBadge();
  _updateResearchCount();
  jobs.refreshLibrary?.({ force: true });

  if ('Notification' in window && Notification.permission === 'default') {
    try { Notification.requestPermission(); } catch {}
  }

  if (focusJobId) _focusJob(focusJobId);
}

// Scroll to + highlight a research job card by session id. Used by the
// chat anchor-link delegate ([Topic](#research-<session_id>)).
function _focusJob(jobId) {
  if (!jobId) return;
  // jobs may still be loading from /api/research/active — retry a few times.
  let tries = 0;
  const tryFocus = () => {
    const card = document.querySelector(`[data-job-id="${jobId}"]`);
    if (card) {
      card.scrollIntoView({ behavior: 'smooth', block: 'center' });
      card.classList.add('research-card-flash');
      setTimeout(() => card.classList.remove('research-card-flash'), 2000);
      return;
    }
    if (tries++ < 8) setTimeout(tryFocus, 400);
  };
  setTimeout(tryFocus, 200);
}

export function closePanel() {
  if (!_open) return;
  _open = false;

  if (_onDocKeydown) {
    document.removeEventListener('keydown', _onDocKeydown);
    _onDocKeydown = null;
  }

  document.body.classList.remove('research-panel-view');
  const btn = document.getElementById('tool-research-btn');
  if (btn) btn.classList.remove('active');

  const overlay = document.getElementById('research-overlay');
  if (overlay) overlay.remove();
}

function _buildPanelHTML() {
  const searchProviders = ['', 'searxng', 'duckduckgo', 'tavily', 'brave', 'google', 'serper'];
  const providerOpts = searchProviders.map(p =>
    `<option value="${p}">${p || 'Default'}</option>`
  ).join('');

  let roundOpts = '<option value="0" selected>Auto</option>';
  for (let i = 1; i <= 20; i++) {
    roundOpts += `<option value="${i}">${i}</option>`;
  }

  const settingsHidden = _settingsCollapsed ? ' style="display:none"' : '';
  const chevronCls = _settingsCollapsed ? ' collapsed' : '';

  return `
    <div class="modal-header research-pane-header">
      <h4><span style="position:relative;top:-1px;left:6px;display:inline-flex;vertical-align:middle;">${_searchIcon}</span><span style="margin-left:6px;">Deep Research</span></h4>
      <div class="research-pane-header-actions">
        <button id="research-panel-minimize" class="modal-minimize-btn" type="button" title="Minimize"><svg width="14" height="14" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round"><line x1="5" y1="18" x2="19" y2="18"/></svg></button>
        <button id="research-panel-close" class="close-btn" title="Close">&#x2716;</button>
      </div>
    </div>
    <div class="modal-body research-pane-body" data-no-swipe-dismiss>
      <div class="research-new-job">
        <div style="display:flex;align-items:center;gap:8px;margin-bottom:2px;">
          <h2 style="margin:0;padding:0;line-height:1;display:inline-flex;align-items:center;gap:6px;"><svg width="14" height="14" viewBox="0 0 24 24" fill="none" stroke="var(--accent, var(--red))" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" style="flex-shrink:0;"><path d="M6 18h8"/><path d="M3 22h18"/><path d="M14 22a7 7 0 1 0 0-14h-1"/><path d="M9 14h2"/><path d="M9 12a2 2 0 0 1-2-2V6h4v4a2 2 0 0 1-2 2Z"/><path d="M12 6V3a1 1 0 0 0-1-1H9a1 1 0 0 0-1 1v3"/></svg>Research <span id="research-stats" class="memory-count" style="font-size:0.6em;opacity:0.6;font-weight:normal"></span></h2>
        </div>
        <p class="memory-desc doclib-desc" style="margin-top:2px;display:flex;align-items:center;gap:6px;flex-wrap:wrap;">
          <span>Multi-step web research with an LLM-in-the-loop agent</span>
          <span id="research-no-past-hint" style="display:none;font:inherit;opacity:1;position:static;">All past research found in: <button type="button" class="research-library-link" style="background:none;border:none;padding:0;font:inherit;color:var(--accent, var(--red));cursor:pointer;text-decoration:underline;">Library, Research</button></span>
        </p>
        <textarea id="research-query" class="research-query" placeholder="${_pickResearchHint()}" rows="4"></textarea>
        <button id="research-settings-toggle" class="research-settings-toggle${chevronCls}">
          <svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" style="vertical-align:-2px;margin-right:4px;opacity:0.85;flex-shrink:0;"><circle cx="12" cy="12" r="3"/><path d="M19.4 15a1.65 1.65 0 0 0 .33 1.82l.06.06a2 2 0 0 1 0 2.83 2 2 0 0 1-2.83 0l-.06-.06a1.65 1.65 0 0 0-1.82-.33 1.65 1.65 0 0 0-1 1.51V21a2 2 0 0 1-2 2 2 2 0 0 1-2-2v-.09A1.65 1.65 0 0 0 9 19.4a1.65 1.65 0 0 0-1.82.33l-.06.06a2 2 0 0 1-2.83 0 2 2 0 0 1 0-2.83l.06-.06a1.65 1.65 0 0 0 .33-1.82 1.65 1.65 0 0 0-1.51-1H3a2 2 0 0 1-2-2 2 2 0 0 1 2-2h.09A1.65 1.65 0 0 0 4.6 9a1.65 1.65 0 0 0-.33-1.82l-.06-.06a2 2 0 0 1 0-2.83 2 2 0 0 1 2.83 0l.06.06a1.65 1.65 0 0 0 1.82.33H9a1.65 1.65 0 0 0 1-1.51V3a2 2 0 0 1 2-2 2 2 0 0 1 2 2v.09a1.65 1.65 0 0 0 1 1.51 1.65 1.65 0 0 0 1.82-.33l.06-.06a2 2 0 0 1 2.83 0 2 2 0 0 1 0 2.83l-.06.06a1.65 1.65 0 0 0-.33 1.82V9a1.65 1.65 0 0 0 1.51 1H21a2 2 0 0 1 2 2 2 2 0 0 1-2 2h-.09a1.65 1.65 0 0 0-1.51 1z"/></svg>Settings<span class="research-settings-chevron">${_chevronIcon}</span>
        </button>
        <div id="research-settings-body" class="research-settings-row"${settingsHidden}>
          <label class="research-setting">
            <span class="research-setting-label">Rounds <span class="hwfit-help-chip hwfit-help-chip-inline" title="How many search → read → reflect rounds the agent runs. More rounds = deeper coverage, longer wait, more tokens.">?</span></span>
            <select id="research-rounds">${roundOpts}</select>
          </label>
          <label class="research-setting">
            <span class="research-setting-label">Format <span class="hwfit-help-chip hwfit-help-chip-inline" title="Auto lets the LLM pick the output shape. Override when you specifically want a Compare table, How-to, Product, or Fact-check.">?</span></span>
            <select id="research-category">
              <option value="" selected>Auto</option>
              <option value="product">Product</option>
              <option value="comparison">Compare</option>
              <option value="howto">How-to</option>
              <option value="factcheck">Fact-check</option>
            </select>
          </label>
          <label class="research-setting">
            <span class="research-setting-label">Search engine</span>
            <select id="research-search-provider">${providerOpts}</select>
          </label>
          <label class="research-setting">
            <span class="research-setting-label">Endpoint</span>
            <select id="research-endpoint"><option value="">Default</option></select>
          </label>
          <label class="research-setting">
            <span class="research-setting-label">Model</span>
            <select id="research-model"><option value="">Default</option></select>
          </label>
        </div>
        <div class="research-controls-row">
          <button id="research-add-btn" class="research-add-btn"><span class="research-add-plus">+</span> Queue</button>
          <button id="research-start-btn" class="research-start-btn">${_playIcon} Start</button>
        </div>
      </div>
      <div id="research-jobs-list" class="research-jobs-list" data-no-swipe-dismiss></div>
    </div>
  `;
}

/** Fade/slide a card out, then run the removal — matches cookbook's smooth exit. */
function _animateOutThenRemove(el, removeFn) {
  if (!el || !el.style) { removeFn(); return; }
  el.style.transition = 'opacity 0.3s ease, transform 0.3s ease';
  el.style.opacity = '0';
  el.style.transform = 'translateX(-10px)';
  setTimeout(removeFn, 320);
}

/** Dismiss the mobile keyboard by stealing focus into a throwaway readonly
 *  input (blur() alone is often ignored on Firefox mobile). */
function _dismissKeyboard(input) {
  try {
    if (input) input.blur();
    const tmp = document.createElement('input');
    tmp.setAttribute('readonly', 'readonly');
    tmp.style.cssText = 'position:fixed;top:0;left:0;width:1px;height:1px;opacity:0;border:0;padding:0;';
    document.body.appendChild(tmp);
    tmp.focus();
    setTimeout(() => { try { tmp.blur(); tmp.remove(); } catch {} }, 60);
  } catch {}
}

/** Reset the category selector back to "Auto" (called after each start). */
function _resetCategoryToAuto() {
  const sel = document.getElementById('research-category');
  if (sel) sel.value = '';
}

function _wireEvents(pane) {
  pane.querySelector('#research-panel-close').addEventListener('click', closePanel);
  pane.querySelector('#research-panel-minimize')?.addEventListener('click', () => {
    const overlay = document.getElementById('research-overlay');
    if (overlay) overlay.style.display = 'none';
    const btn = document.getElementById('tool-research-btn');
    if (btn) btn.classList.add('minimized');
  });
  pane.querySelector('#research-start-btn').addEventListener('click', _handleStart);
  pane.querySelector('#research-add-btn').addEventListener('click', _handleAdd);

  pane.querySelector('#research-settings-toggle').addEventListener('click', () => {
    const body = document.getElementById('research-settings-body');
    const btn = document.getElementById('research-settings-toggle');
    if (!body || !btn) return;
    _settingsCollapsed = !_settingsCollapsed;
    body.style.display = _settingsCollapsed ? 'none' : '';
    btn.classList.toggle('collapsed', _settingsCollapsed);
    try { localStorage.setItem('odysseus-research-settings-collapsed', _settingsCollapsed ? '1' : '0'); } catch {}
  });

  const queryInput = pane.querySelector('#research-query');
  queryInput.addEventListener('keydown', (e) => {
    if (e.key === 'Enter' && (e.ctrlKey || e.metaKey)) {
      e.preventDefault();
      _handleStart();
    }
  });

  const endpointSelect = pane.querySelector('#research-endpoint');
  endpointSelect.addEventListener('change', () => _populateModels(endpointSelect.value));

  _renderJobs();
}

function _readSettings() {
  const category = document.getElementById('research-category')?.value || undefined;
  const settings = {
    max_rounds: parseInt(document.getElementById('research-rounds')?.value || '0', 10),
    search_provider: document.getElementById('research-search-provider')?.value || undefined,
    endpoint_id: document.getElementById('research-endpoint')?.value || undefined,
    model: document.getElementById('research-model')?.value || undefined,
    category: category || undefined,
  };
  const epSel = document.getElementById('research-endpoint');
  if (epSel && epSel.value) {
    const opt = epSel.options[epSel.selectedIndex];
    settings._endpointName = opt?.textContent || '';
  }
  const modelSel = document.getElementById('research-model');
  if (modelSel && modelSel.value) settings._modelName = modelSel.value;
  Object.keys(settings).forEach(k => { if (!settings[k]) delete settings[k]; });
  return settings;
}

function _handleAdd() {
  const queryEl = document.getElementById('research-query');
  const query = (queryEl?.value || '').trim();
  if (!query) { queryEl?.focus(); return; }
  _saveSettingsToStorage();
  jobs.addToQueue(query, _readSettings());
  queryEl.value = '';
  queryEl.focus();
}

// Move a job's data back into the compose form so user can edit and re-queue
function _editJob(job) {
  const queryEl = document.getElementById('research-query');
  if (queryEl) {
    queryEl.value = job.query || '';
    queryEl.focus();
    queryEl.setSelectionRange(queryEl.value.length, queryEl.value.length);
  }
  // Restore category
  const cat = job.category || '';
  const catSel = document.getElementById('research-category');
  if (catSel) catSel.value = cat;
  // Restore settings
  const s = job.settings || {};
  const roundsEl = document.getElementById('research-rounds');
  if (roundsEl && s.max_rounds) roundsEl.value = s.max_rounds;
  const spEl = document.getElementById('research-search-provider');
  if (spEl && s.search_provider) spEl.value = s.search_provider;
  const epEl = document.getElementById('research-endpoint');
  if (epEl && s.endpoint_id) epEl.value = s.endpoint_id;
  const mEl = document.getElementById('research-model');
  if (mEl && s.model) mEl.value = s.model;
  // Remove the old job so clicking Start/Queue makes a fresh one
  jobs.removeJob(job.id);
  // Scroll the form into view
  queryEl?.scrollIntoView({ behavior: 'smooth', block: 'center' });
}

async function _handleStart() {
  const queryEl = document.getElementById('research-query');
  const startBtn = document.getElementById('research-start-btn');
  const query = (queryEl?.value || '').trim();

  // "Start All" mode: more than one job queued → let the user pick parallel
  // vs sequential before launching. Queue any freshly-typed query first so
  // it joins the batch, then open the picker anchored to this button.
  const queuedCount = jobs.getJobs().filter(j => j.status === 'queued').length;
  if (queuedCount > 1) {
    if (query) { _saveSettingsToStorage(); jobs.addToQueue(query, _readSettings()); queryEl.value = ''; }
    _resetCategoryToAuto();
    if (window.innerWidth <= 768) _dismissKeyboard(queryEl);
    const total = jobs.getJobs().filter(j => j.status === 'queued').length;
    _promptParallelOrSequential(total, startBtn);
    return;
  }

  // Visual + spinner feedback while the launch request is in flight
  const _setBusy = (busy) => {
    if (!startBtn) return;
    if (busy) {
      startBtn.disabled = true;
      startBtn.dataset._origHTML = startBtn.dataset._origHTML || startBtn.innerHTML;
      startBtn.innerHTML = '';
      try {
        const _wp = spinnerModule.createWhirlpool(14);
        _wp.element.style.cssText += ';vertical-align:middle;margin-right:5px;position:relative;top:-1px;';
        startBtn.appendChild(_wp.element);
      } catch {}
      startBtn.appendChild(document.createTextNode('Starting'));
      startBtn.classList.add('research-start-busy');
    } else {
      startBtn.disabled = false;
      startBtn.classList.remove('research-start-busy');
      if (startBtn.dataset._origHTML) {
        startBtn.innerHTML = startBtn.dataset._origHTML;
      }
    }
  };

  // Show busy briefly for click feedback. Don't await the full launch —
  // the per-job card immediately shows "Starting..." progress, and the
  // backend POST can take a while.
  _setBusy(true);
  setTimeout(() => _setBusy(false), 1500);

  const _mobile = window.innerWidth <= 768;
  if (!query) {
    jobs.startAllQueued();
    _resetCategoryToAuto();
    if (_mobile) _dismissKeyboard(queryEl);
    return;
  }
  _saveSettingsToStorage();
  const settings = _readSettings();
  queryEl.value = '';
  // Mobile: drop the keyboard after sending; desktop: keep focus for fast follow-ups.
  if (_mobile) _dismissKeyboard(queryEl); else queryEl.focus();
  _resetCategoryToAuto();
  jobs.startJob(query, settings).catch((e) => {
    if (typeof uiModule !== 'undefined' && uiModule?.showError) uiModule.showError('Failed to start research');
    queryEl.value = query; // restore so user can retry
  });
}

function _restoreSavedSettings() {
  const saved = _loadSettingsFromStorage();
  if (!saved) return;
  if (saved.category !== undefined) {
    const catSel = document.getElementById('research-category');
    if (catSel) catSel.value = saved.category;
  }
  // Rounds intentionally defaults to "Auto" on every open — don't restore.
  // Users can pick a specific cap each time if needed.
  const search = document.getElementById('research-search-provider');
  if (search && saved.search_provider !== undefined) search.value = saved.search_provider;
  const ep = document.getElementById('research-endpoint');
  if (ep && saved.endpoint_id) {
    ep.value = saved.endpoint_id;
    _populateModels(saved.endpoint_id);
    if (saved.model) {
      setTimeout(() => {
        const model = document.getElementById('research-model');
        if (model) model.value = saved.model;
      }, 50);
    }
  }
}

async function _loadEndpoints() {
  try {
    const res = await fetch(`${_apiBase}/api/model-endpoints`, { credentials: 'same-origin' });
    if (!res.ok) return;
    _endpoints = await res.json();
    const sel = document.getElementById('research-endpoint');
    if (!sel) return;
    _endpoints.filter(e => e.is_enabled && e.model_type === 'llm').forEach(ep => {
      const opt = document.createElement('option');
      opt.value = ep.id;
      opt.textContent = ep.name || ep.base_url;
      sel.appendChild(opt);
    });
  } catch {}
}

function _populateModels(endpointId) {
  const sel = document.getElementById('research-model');
  if (!sel) return;
  sel.innerHTML = '<option value="">Default</option>';
  if (!endpointId) return;
  const ep = _endpoints.find(e => e.id === endpointId);
  if (!ep || !ep.models) return;
  sortModelIds(ep.models).forEach(m => {
    const opt = document.createElement('option');
    opt.value = m;
    opt.textContent = m;
    sel.appendChild(opt);
  });
}

// ── Job rendering ──

function _renderJobs() {
  // Keep the rail/sidebar indicator in sync on every job-state change,
  // even when the panel is closed (no container yet).
  _syncResearchRail();
  const container = document.getElementById('research-jobs-list');
  if (!container) return;

  const allJobs = jobs.getJobs();
  if (!allJobs.length) {
    // No empty-state text in the body — the query box above is the call to
    // action. But still surface the "All past research found in: Library,
    // Research" hint under the main title, since the Past section won't
    // render to host it (this is exactly the case the dynamic hint targets).
    container.innerHTML = '';
    const noPastHint = document.getElementById('research-no-past-hint');
    if (noPastHint) {
      noPastHint.style.display = '';
      if (!noPastHint.dataset._wired) {
        noPastHint.dataset._wired = '1';
        noPastHint.querySelector('.research-library-link')?.addEventListener('click', (e) => {
          e.stopPropagation();
          closePanel();
          if (window.documentModule && window.documentModule.openLibrary) {
            window.documentModule.openLibrary({ tab: 'research' });
          }
        });
      }
    }
    return;
  }

  container.innerHTML = '';

  const active = allJobs.filter(j => j.status === 'queued' || j.status === 'running' || j.status === 'error' || j.status === 'cancelled');
  const past = allJobs.filter(j => j.status === 'done' && j._fromLibrary);
  const recentDone = allJobs.filter(j => j.status === 'done' && !j._fromLibrary).reverse();

  // Keep the header "(N research)" chip in sync with the Past-section count.
  // _updateResearchCount fetches the library total only, which under-counts
  // when there's a session-completed job not yet persisted to the library.
  const statsEl = document.getElementById('research-stats');
  if (statsEl) {
    const n = recentDone.length + past.length;
    statsEl.textContent = n + ' research';
  }

  // The main Start button doubles as "Start All (N)" when more than one job
  // is queued — clicking it then opens the parallel/sequential picker. No
  // separate queue-bar button (that was the redundant second button).
  const queued = active.filter(j => j.status === 'queued');
  const startBtn = document.getElementById('research-start-btn');
  if (startBtn && !startBtn.classList.contains('research-start-busy')) {
    startBtn.innerHTML = queued.length > 1
      ? `${_playIcon} Start All (${queued.length})`
      : `${_playIcon} Start`;
    startBtn.dataset._origHTML = startBtn.innerHTML;
  }

  // Dynamic Past hint: when the Past section won't render (no past items),
  // surface the "All past research found in: Library, Research" line under
  // the main Research title instead, so the link is always discoverable.
  const noPastHint = document.getElementById('research-no-past-hint');
  if (noPastHint) {
    const hasPast = past.length + recentDone.length > 0;
    noPastHint.style.display = hasPast ? 'none' : '';
    if (!hasPast && !noPastHint.dataset._wired) {
      noPastHint.dataset._wired = '1';
      noPastHint.querySelector('.research-library-link')?.addEventListener('click', (e) => {
        e.stopPropagation();
        closePanel();
        if (window.documentModule && window.documentModule.openLibrary) {
          window.documentModule.openLibrary({ tab: 'research' });
        }
      });
    }
  }

  // Clean up synapses for jobs that finished or disappeared. complete()
  // marks the SVG green for ~800ms before destroy removes it.
  const liveIds = new Set(allJobs.filter(j => j.status === 'running').map(j => j.id));
  for (const [jobId, entry] of _jobSynapses) {
    if (liveIds.has(jobId)) continue;
    try { entry.synapse.complete(); } catch {}
    setTimeout(() => { try { entry.synapse.destroy(); } catch {} }, 800);
    _jobSynapses.delete(jobId);
  }

  // Group into foldable sections: "Active" (in-progress) and "Past research"
  // (everything done — this session + library). Each has a clickable title
  // that collapses its body. Collapsed state persists across re-renders via
  // the module-level _collapsedSections set.
  const _addSection = (key, title, arr) => {
    if (!arr.length) return;
    const collapsed = _collapsedSections.has(key);
    const sec = document.createElement('div');
    sec.className = 'research-section' + (collapsed ? ' collapsed' : '');
    const header = document.createElement('div');
    header.className = 'research-section-header';
    // Status dot on the right (visible even when folded):
    //  • Active = pulsing accent glow (work in progress)
    //  • any failed/cancelled job in Active = solid red
    //  • Past (done) = solid green (success)
    let dotColor, dotPulse = false;
    if (key === 'active') {
      const failed = arr.some(j => j.status === 'error' || j.status === 'cancelled');
      if (failed) { dotColor = '#f44336'; }
      else { dotColor = 'var(--accent, var(--red))'; dotPulse = true; }
    } else {
      dotColor = 'var(--color-success)';
    }
    // Both sections carry a "Clear all" button in the header (cookbook-running
    // section style); it clears all research and must not toggle the fold.
    const clearAllHtml = '<button class="research-section-clear" title="Clear all research">' + _cancelIcon + ' Clear all</button>';
    header.innerHTML =
      '<span class="research-section-title">' + title + '</span>'
      + '<span class="research-section-count memory-count">' + arr.length + ' research</span>'
      + '<span class="research-section-right">'
      +   clearAllHtml
      +   '<span class="research-section-dot' + (dotPulse ? ' pulsing' : '') + '" style="background:' + dotColor + ';"></span>'
      +   '<svg class="research-section-chevron" width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round"><polyline points="6 9 12 15 18 9"/></svg>'
      + '</span>';
    if (key === 'past') {
      const hint = document.createElement('span');
      hint.className = 'research-library-hint';
      hint.innerHTML = '<span>All past research found in:</span> <button type="button" class="research-library-link">Library, Research</button>';
      hint.querySelector('.research-library-link').addEventListener('click', (e) => {
        e.stopPropagation();
        // Close the research panel first so the Library opens ABOVE it on mobile
        // (otherwise it stacks under the full-screen panel).
        closePanel();
        if (window.documentModule && window.documentModule.openLibrary) {
          window.documentModule.openLibrary({ tab: 'research' });
        }
      });
      header.appendChild(hint);
    }
    header.addEventListener('click', () => {
      const nowCollapsed = sec.classList.toggle('collapsed');
      if (nowCollapsed) _collapsedSections.add(key); else _collapsedSections.delete(key);
    });
    header.querySelector('.research-section-clear')?.addEventListener('click', (e) => {
      e.stopPropagation();
      // Gracefully fade + collapse the whole section block(s) out, then clear.
      container.querySelectorAll('.research-section').forEach(s => {
        s.style.transition = 'opacity 0.3s ease, transform 0.3s ease';
        s.style.opacity = '0';
        s.style.transform = 'translateX(-10px)';
      });
      setTimeout(() => jobs.clearAll(), 320);
    });
    const body = document.createElement('div');
    body.className = 'research-section-body';
    arr.forEach(j => body.appendChild(_buildJobCard(j)));
    sec.appendChild(header);
    sec.appendChild(body);
    container.appendChild(sec);
  };

  // ("Clear all" lives inside the Past research section header — see _addSection.)

  _addSection('active', 'Active', active);
  _addSection('past', 'Past research', recentDone.concat(past));
}

/** Pick parallel vs sequential as a small popover anchored to the
 *  Start-All button. Drops down by default; flips to drop-up if there
 *  isn't enough room below the button. Outside-click / Esc dismiss. */
function _promptParallelOrSequential(count, anchorBtn) {
  // Strip any prior instance so a second click closes-then-reopens cleanly.
  const existing = document.getElementById('research-run-mode-popover');
  if (existing) { existing.remove(); return; }
  if (!anchorBtn) return;

  const rect = anchorBtn.getBoundingClientRect();
  const pop = document.createElement('div');
  pop.id = 'research-run-mode-popover';
  pop.className = 'research-run-mode-popover';
  // Same parallel / sequential glyphs the model-comparison picker uses.
  const ICON_PARALLEL = '<svg width="16" height="16" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round"><line x1="4" y1="6" x2="20" y2="6"/><line x1="4" y1="12" x2="20" y2="12"/><line x1="4" y1="18" x2="20" y2="18"/></svg>';
  const ICON_SEQUENTIAL = '<svg width="16" height="16" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round"><line x1="8" y1="6" x2="20" y2="6"/><line x1="8" y1="12" x2="20" y2="12"/><line x1="8" y1="18" x2="20" y2="18"/><circle cx="4" cy="6" r="1.5" fill="currentColor"/><circle cx="4" cy="12" r="1.5" fill="currentColor"/><circle cx="4" cy="18" r="1.5" fill="currentColor"/></svg>';
  pop.innerHTML =
    '<button class="research-run-mode-row" data-mode="parallel">' + ICON_PARALLEL + '<span class="rrm-title">Parallel</span></button>'
    + '<button class="research-run-mode-row" data-mode="sequential">' + ICON_SEQUENTIAL + '<span class="rrm-title">Sequential</span></button>';
  document.body.appendChild(pop);

  // Position: prefer dropping down from the button's bottom-right corner.
  // If there isn't enough room below the viewport, flip to drop-up above.
  const popHeight = pop.offsetHeight;
  const margin = 6;
  const spaceBelow = window.innerHeight - rect.bottom;
  const goUp = spaceBelow < popHeight + margin && rect.top > popHeight + margin;
  const top = goUp ? (rect.top - popHeight - margin) : (rect.bottom + margin);
  // Right-align to the button so the menu doesn't extend off-screen on the right
  const right = Math.max(8, window.innerWidth - rect.right);
  pop.style.top = `${Math.round(top)}px`;
  pop.style.right = `${Math.round(right)}px`;
  pop.classList.add(goUp ? 'rrm-up' : 'rrm-down');

  const close = () => {
    pop.remove();
    document.removeEventListener('click', onDocClick, true);
    document.removeEventListener('keydown', onKey, true);
  };
  const onDocClick = (e) => {
    if (pop.contains(e.target) || e.target === anchorBtn) return;
    close();
  };
  const onKey = (e) => {
    if (e.key === 'Escape') { e.preventDefault(); close(); }
  };
  setTimeout(() => {
    document.addEventListener('click', onDocClick, true);
    document.addEventListener('keydown', onKey, true);
  }, 0);

  pop.querySelectorAll('.research-run-mode-row').forEach(b => {
    b.addEventListener('click', () => {
      const mode = b.dataset.mode;
      close();
      if (mode === 'parallel') jobs.startAllQueued();
      else jobs.startAllQueuedSequential();
    });
  });
}

function _buildJobCard(job) {
  const card = document.createElement('div');
  card.className = `research-job-card ${job.status}${job._fromLibrary ? ' from-library' : ''}`;
  card.dataset.jobId = job.id;
  if (job.category) card.dataset.category = job.category;

  const elapsed = jobs.formatElapsed(job.elapsed || 0);
  const isExpanded = _expandedJobId === job.id;
  const modelTag = (job.modelName || job.settings?._modelName)
    ? `<span class="research-job-model">${_esc(job.modelName || job.settings._modelName)}</span>` : '';

  if (job.status === 'queued') {
    const rounds = job.settings?.max_rounds;
    const roundsLabel = !rounds ? 'Auto rounds' : `${rounds} rounds`;
    const epName = job.settings?._endpointName || '';
    const mName = job.settings?._modelName || '';
    const meta = [mName, epName, roundsLabel].filter(Boolean).join(' -- ');
    card.innerHTML = `
      <div class="research-job-header">
        <span class="research-job-query">${_esc(job.query)}</span>${job.category ? `<span class="research-cat-badge">${_esc(job.category)}</span>` : ""}
      </div>
      <div class="research-job-queued-meta">${_esc(meta)}</div>
      <div class="research-job-actions">
        <button class="research-job-action" data-action="start" title="Start">${_playIcon} Start</button>
        <button class="research-job-action" data-action="edit" title="Edit query">${_editIcon} Edit</button>
        <button class="research-job-action research-job-action-dim" data-action="remove" title="Remove">${_cancelIcon}</button>
      </div>
    `;
    card.querySelector('[data-action="start"]').addEventListener('click', (e) => {
      e.stopPropagation(); jobs.startQueued(job.id);
    });
    card.querySelector('[data-action="edit"]').addEventListener('click', (e) => {
      e.stopPropagation(); _editJob(job);
    });
    card.querySelector('[data-action="remove"]').addEventListener('click', (e) => {
      e.stopPropagation(); jobs.removeJob(job.id);
    });

  } else if (job.status === 'running') {
    // Auto mode (max_rounds=0/undefined) — show round number without total,
    // and base the progress bar on a heuristic cap of 8 rounds.
    const userMaxR = job.settings?.max_rounds || 0;
    const phaseMaxR = userMaxR || 0;  // 0 = formatPhase shows "Round X" without total
    const phase = jobs.formatPhase(job.progress, phaseMaxR);
    const round = job.progress?.round || 0;
    const barCap = userMaxR || 8;
    const pct = Math.min(100, Math.round((round / barCap) * 100));
    card.innerHTML = `
      <div class="research-job-header">
        <span class="research-job-query">${_esc(job.query)}</span>${job.category ? `<span class="research-cat-badge">${_esc(job.category)}</span>` : ""}
        ${modelTag}
        <span class="research-job-time">${elapsed}</span>
        <button class="research-synapse-toggle${_synapseMinimized ? ' active' : ''}" title="${_synapseMinimized ? 'Show visualization' : 'Minimize visualization'}">${_synapseMinimized ? _vizExpandIcon : _vizCollapseIcon}</button>
        <button class="research-job-cancel" title="Cancel research">${_cancelIcon}</button>
      </div>
      <div class="research-job-phase">${phase}</div>
      <div class="research-job-synapse-host${_synapseMinimized ? ' synapse-collapsed' : ''}" data-synapse-host="${job.id}"></div>
      <div class="research-progress-bar"><div class="research-progress-fill" style="width:${pct}%"></div></div>
    `;
    card.querySelector('.research-job-cancel').addEventListener('click', (e) => {
      e.stopPropagation(); jobs.cancelJob(job.id);
    });
    card.querySelector('.research-synapse-toggle')?.addEventListener('click', (e) => {
      e.stopPropagation(); _toggleSynapseMinimized();
    });
    // Click anywhere on the header (title/model/time) toggles the visualization
    // too — the cancel/synapse buttons stopPropagation so they keep their own.
    const _runHdr = card.querySelector('.research-job-header');
    if (_runHdr) {
      _runHdr.style.cursor = 'pointer';
      _runHdr.addEventListener('click', () => _toggleSynapseMinimized());
    }
    // Attach (or re-attach) the live synapse visualization. Created once per
    // job so animations/state persist across the _renderJobs() rebuilds that
    // fire on every progress event.
    const host = card.querySelector('.research-job-synapse-host');
    let entry = _jobSynapses.get(job.id);
    if (!entry) {
      const synapse = createResearchSynapse(host, {
        query: job.query || '',
        startedAt: job.startedAt || (Date.now() - (job.elapsed || 0) * 1000),
        compact: true,
      });
      entry = { synapse, status: 'running' };
      _jobSynapses.set(job.id, entry);
    } else {
      // Move the existing element into the freshly-rendered host
      host.appendChild(entry.synapse.element);
    }
    // Push the current progress state
    if (job.progress) {
      entry.synapse.setPhase(job.progress.phase, job.progress);
      if (typeof job.progress.round === 'number') entry.synapse.setRound(job.progress.round);
      if (typeof job.progress.total_sources === 'number') entry.synapse.setSourceCount(job.progress.total_sources);
    }

  } else if (job.status === 'done') {
    // Library-loaded jobs have sources=null but pre-set sourceCount; fresh jobs
    // populate sources directly. Prefer the pre-set count if present.
    const srcCount = job.sources?.length ?? job.sourceCount ?? 0;
    // 0 sources = the research couldn't gather/extract anything — flag it.
    const failed = srcCount === 0;
    if (failed) card.classList.add('research-job-failed');
    const doneBadge = failed
      ? `<span class="research-cat-badge research-cat-failed">${_cancelIcon} no results</span>`
      : (job.category ? `<span class="research-cat-badge">${_esc(job.category)}</span>` : `<span class="research-cat-badge research-cat-standard">standard</span>`);
    const failNote = failed
      ? `<div class="research-job-failnote">Couldn't extract anything — try rephrasing the question, or switch the search engine in Settings.</div>`
      : '';
    const thumbSource = (job.sources || []).find(s => s && (s.image || s.og_image));
    const thumbUrl = job.thumbnail || thumbSource?.image || thumbSource?.og_image || '';
    const thumbnail = thumbUrl
      ? `<img class="research-job-thumb" src="${_esc(thumbUrl)}" alt="" loading="lazy" referrerpolicy="no-referrer">`
      : '<span class="research-job-thumb research-job-thumb-empty" aria-hidden="true"></span>';
    card.innerHTML = `
      <div class="research-job-header">
        <span class="research-job-query">${_esc(job.query)}</span>${doneBadge}
        ${modelTag}
        <span class="research-job-meta">${elapsed} -- ${srcCount} sources</span>
      </div>
      ${failNote}
      <div class="research-job-actions">
        ${thumbnail}
        <button class="research-job-action research-job-action-report" data-action="report" title="Visual report">${_externalIcon} Visual Report</button>
        <button class="research-job-action" data-action="chat" title="Open follow-up chat with this research as context">${_chatIcon} Discuss</button>
        <button class="research-job-action research-job-action-dim" data-action="copy" title="Copy report to clipboard">${_copyIcon}</button>
        <button class="research-job-action research-job-action-dim" data-action="dismiss" title="Clear from list">${_cancelIcon}</button>
        <button class="research-job-action research-job-action-dim" data-action="delete" title="Delete from disk">${_trashIcon} Delete</button>
      </div>
      ${isExpanded ? `<div class="research-job-result">${_renderResult(job)}</div>` : ''}
    `;
    // Clicking anywhere on the card (except the action buttons, which
    // stopPropagation) opens the visual report — same as the Visual Report btn.
    card.style.cursor = 'pointer';
    card.addEventListener('click', () => {
      window.open(`${_apiBase}/api/research/report/${job.id}`, '_blank');
    });
    card.querySelector('[data-action="copy"]').addEventListener('click', async (e) => {
      e.stopPropagation();
      const btn = e.currentTarget; // capture before await — currentTarget becomes null after
      if (!job.result) await _ensureResult(job);
      _copyResult(job, btn);
    });
    card.querySelector('[data-action="report"]').addEventListener('click', (e) => {
      e.stopPropagation();
      window.open(`${_apiBase}/api/research/report/${job.id}`, '_blank');
    });
    card.querySelector('[data-action="chat"]').addEventListener('click', (e) => {
      e.stopPropagation();
      _chatAboutResearch(job.id, e.currentTarget);
    });
    card.querySelector('[data-action="delete"]').addEventListener('click', async (e) => {
      e.stopPropagation();
      if (window.styledConfirm) {
        const ok = await window.styledConfirm('Delete this research? This permanently removes it from disk.', { confirmText: 'Delete', danger: true });
        if (!ok) return;
      }
      try { await fetch(`${_apiBase}/api/research/${job.id}`, { method: 'DELETE', credentials: 'same-origin' }); } catch {}
      _animateOutThenRemove(card, () => jobs.removeJob(job.id));
    });
    card.querySelector('[data-action="dismiss"]').addEventListener('click', (e) => {
      e.stopPropagation();
      _animateOutThenRemove(card, () => jobs.removeJob(job.id));
    });

  } else {
    const errMsg = job.errorMsg ? `<div class="research-job-error">${_esc(job.errorMsg)}</div>` : '';
    card.innerHTML = `
      <div class="research-job-header">
        <span class="research-job-query">${_esc(job.query)}</span>${job.category ? `<span class="research-cat-badge">${_esc(job.category)}</span>` : ""}
        <span class="research-job-status">${job.status}</span>
      </div>
      ${errMsg}
      <div class="research-job-actions">
        <button class="research-job-action" data-action="retry" title="Retry">${_retryIcon} Retry</button>
        <button class="research-job-action" data-action="edit" title="Edit and retry">${_editIcon} Edit</button>
        <button class="research-job-action research-job-action-dim" data-action="dismiss" title="Dismiss">${_cancelIcon}</button>
      </div>
    `;
    card.querySelector('[data-action="retry"]').addEventListener('click', (e) => {
      e.stopPropagation(); jobs.retryJob(job.id);
    });
    card.querySelector('[data-action="edit"]').addEventListener('click', (e) => {
      e.stopPropagation(); _editJob(job);
    });
    card.querySelector('[data-action="dismiss"]').addEventListener('click', (e) => {
      e.stopPropagation(); jobs.removeJob(job.id);
    });
  }

  return card;
}

const _CAT_ICONS = {
  product:    '<svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><rect x="3" y="8" width="18" height="13" rx="2"/><path d="M7 8V5a5 5 0 0 1 10 0v3"/></svg>',
  comparison: '<svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M8 3v18"/><path d="M16 3v18"/><path d="M3 8h5"/><path d="M16 16h5"/></svg>',
  howto:      '<svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M9 11l3 3L22 4"/><path d="M21 12v7a2 2 0 0 1-2 2H5a2 2 0 0 1-2-2V5a2 2 0 0 1 2-2h11"/></svg>',
  landscape:  '<svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><rect x="3" y="3" width="7" height="7"/><rect x="14" y="3" width="7" height="7"/><rect x="14" y="14" width="7" height="7"/><rect x="3" y="14" width="7" height="7"/></svg>',
  factcheck:  '<svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M12 22s8-4 8-10V5l-8-3-8 3v7c0 6 8 10 8 10z"/><path d="M9 12l2 2 4-4"/></svg>',
};

const _CAT_LABELS = {
  product: 'Product',
  comparison: 'Comparison',
  howto: 'How-to Guide',
  landscape: 'Landscape',
  factcheck: 'Fact-check',
};

function _renderResult(job) {
  if (!job.result) return '<div class="research-job-loading">Loading result...</div>';
  const cat = job.category || '';
  const catIcon = _CAT_ICONS[cat] || '';
  const catLabel = _CAT_LABELS[cat] || '';

  let html = '';

  // Category hero banner — only for completed, known-category results
  if (cat && catIcon) {
    html += `
      <div class="research-hero research-hero-${cat}">
        <span class="research-hero-icon">${catIcon}</span>
        <div class="research-hero-text">
          <div class="research-hero-label">${catLabel}</div>
          <div class="research-hero-query">${_esc(job.query)}</div>
        </div>
      </div>
    `;
  }

  if (job.sources?.length) {
    html += '<div class="research-job-sources">';
    for (const s of job.sources.slice(0, 10)) {
      const title = _esc(s.title || s.url || '');
      const url = _safeSourceHref(s.url);
      html += url
        ? `<a href="${url}" target="_blank" rel="noopener" class="research-source-link">${title}</a>`
        : `<span class="research-source-link">${title}</span>`;
    }
    if (job.sources.length > 10) html += `<span class="research-source-more">+${job.sources.length - 10} more</span>`;
    html += '</div>';
  }

  const bodyCls = `research-job-report-body${cat ? ' research-body-' + cat : ''}`;
  if (_markdownModule) {
    html += `<div class="${bodyCls}">${_markdownModule.renderContent(job.result)}</div>`;
  } else {
    html += `<div class="${bodyCls}"><pre>${_esc(job.result)}</pre></div>`;
  }
  return html;
}

async function _ensureResult(job) {
  if (job.result) return;
  try {
    const res = await fetch(`${_apiBase}/api/research/result-peek/${job.id}`, {
      method: 'POST', credentials: 'same-origin',
    });
    if (!res.ok) return;
    const d = await res.json();
    job.result = d.result;
    job.sources = d.sources;
    job.findings = d.raw_findings;
  } catch {}
}

async function _copyResult(job, btn) {
  if (!job.result) return;
  let text = `# ${job.query}\n\n${job.result}`;
  if (job.findings?.length) {
    text += '\n\n---\n## Raw Findings\n';
    for (const f of job.findings) {
      text += `\n### ${f.title || 'Untitled'}\nSource: ${f.url || ''}\n${f.summary || ''}\n`;
    }
  }
  if (job.sources?.length) {
    const srcList = job.sources.map(s => `- [${s.title || s.url}](${s.url})`).join('\n');
    text += `\n\n---\n## Sources\n${srcList}`;
  }
  let ok = false;
  try {
    if (navigator.clipboard && window.isSecureContext) {
      await navigator.clipboard.writeText(text);
      ok = true;
    }
  } catch {}
  if (!ok) {
    // Fallback for non-secure contexts (HTTP self-host) where navigator.clipboard
    // is unavailable. The textarea must be in-viewport and focusable for Firefox
    // Android / iOS Safari to allow execCommand('copy').
    const ta = document.createElement('textarea');
    ta.value = text;
    ta.readOnly = false;
    ta.contentEditable = 'true';
    ta.style.cssText = 'position:fixed;top:0;left:0;width:1px;height:1px;padding:0;border:0;opacity:0;font-size:16px;';
    document.body.appendChild(ta);
    ta.focus();
    ta.select();
    try { ta.setSelectionRange(0, text.length); } catch {}
    try {
      const sel = window.getSelection();
      if (sel && (!sel.rangeCount || sel.isCollapsed)) {
        const range = document.createRange();
        range.selectNodeContents(ta);
        sel.removeAllRanges();
        sel.addRange(range);
        ta.setSelectionRange(0, text.length);
      }
    } catch {}
    try { ok = document.execCommand('copy'); } catch {}
    ta.remove();
  }
  if (btn) {
    const orig = btn.innerHTML;
    if (ok) {
      btn.innerHTML = `<svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2.5" stroke-linecap="round" stroke-linejoin="round"><polyline points="20 6 9 17 4 12"/></svg>`;
      btn.classList.add('research-job-action-copied');
      setTimeout(() => { btn.innerHTML = orig; btn.classList.remove('research-job-action-copied'); }, 2000);
    } else {
      btn.innerHTML = `${_cancelIcon} Failed`;
      setTimeout(() => { btn.innerHTML = orig; }, 2000);
    }
  }
}

// ── Chat about this research (server-side spinoff) ──

async function _chatAboutResearch(researchId, btn) {
  if (!researchId) return;
  const origLabel = btn ? btn.innerHTML : '';
  if (btn) { btn.disabled = true; btn.innerHTML = `${_chatIcon} Creating…`; }
  try {
    const res = await fetch(`${_apiBase}/api/research/spinoff/${researchId}`, {
      method: 'POST', credentials: 'same-origin',
    });
    if (!res.ok) {
      let detail = '';
      try { detail = (await res.json()).detail || ''; } catch {}
      throw new Error(detail || `HTTP ${res.status}`);
    }
    const payload = await res.json();
    if (_sessionModule && _sessionModule.selectSession && payload.session_id) {
      if (_sessionModule.loadSessions) await _sessionModule.loadSessions().catch(() => {});
      await _sessionModule.selectSession(payload.session_id);
      closePanel();
    } else if (payload.session_id) {
      window.location.hash = '#' + payload.session_id;
      window.location.reload();
    } else {
      // 200 OK but no session_id — server contract violation. Don't leave
      // the button stuck on 'Creating…'; surface the failure instead.
      throw new Error('Server returned no session id');
    }
  } catch (e) {
    if (btn) { btn.disabled = false; btn.innerHTML = origLabel; }
    alert('Could not start follow-up chat: ' + e.message);
  }
}

function _esc(s) {
  const d = document.createElement('div');
  d.textContent = s || '';
  return d.innerHTML;
}

function _safeSourceHref(raw) {
  try {
    const parsed = new URL(String(raw || '').trim(), window.location.origin);
    if (parsed.protocol === 'http:' || parsed.protocol === 'https:') return _esc(parsed.href);
  } catch {}
  return '';
}
