Warning: Permanently added '3.238.239.26' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 2011884 --chroot fedora-34-x86_64 --detached Version: 0.47 Task: {'build_id': 2011884, 'buildroot_pkgs': [], 'chroot': 'fedora-34-x86_64', 'enable_net': False, 'git_hash': 'c12d8d55a96829097740c657dc5554f6af527b8c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/odubaj/autoconf-2.70/bionetgen.git', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bionetgen', 'package_version': '2.5.2-2', 'project_dirname': 'autoconf-2.70', 'project_name': 'autoconf-2.70', 'project_owner': 'odubaj', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/odubaj/autoconf-2.70/fedora-34-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'odubaj/autoconf-2.70--odubaj', 'source_json': {}, 'source_type': None, 'submitter': 'odubaj', 'task_id': '2011884-fedora-34-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/odubaj/autoconf-2.70/bionetgen.git /tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/odubaj/autoconf-2.70/bionetgen.git', '/tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen'... Running: git checkout c12d8d55a96829097740c657dc5554f6af527b8c cmd: ['git', 'checkout', 'c12d8d55a96829097740c657dc5554f6af527b8c'] cwd: /tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen rc: 0 stdout: stderr: Note: switching to 'c12d8d55a96829097740c657dc5554f6af527b8c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at c12d8d5 automatic import of bionetgen Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bionetgen-BioNetGen-2.5.2.tar.gz INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.5.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/odubaj/autoconf-2.70/bionetgen/bionetgen-BioNetGen-2.5.2.tar.gz/md5/9a113e93e5aa10c70a3c70d09b70af4f/bionetgen-BioNetGen-2.5.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 23.7M 100 23.7M 0 0 188M 0 --:--:-- --:--:-- --:--:-- 188M INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.5.2.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen/bionetgen.spec --sources /tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1614002910.079767 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.9 starting (python version = 3.9.1, NVR = mock-2.9-1.fc33)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen/bionetgen.spec) Config(fedora-34-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-34-x86_64-bootstrap-1614002910.079767/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.9 INFO: Mock Version: 2.9 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk Copr repository 36 MB/s | 8.7 MB 00:00 fedora 23 MB/s | 73 MB 00:03 updates 2.2 kB/s | 257 B 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf  noarch 4.6.0-1.fc34 fedora 446 k dnf-plugins-core  noarch 4.0.19-1.fc34 fedora 35 k Installing dependencies: alternatives  x86_64 1.15-2.fc34 fedora 35 k audit-libs  x86_64 3.0.1-2.fc34 fedora 115 k basesystem  noarch 11-11.fc34 fedora 7.0 k bash  x86_64 5.1.4-1.fc34 copr_base 1.7 M bzip2-libs  x86_64 1.0.8-6.fc34 fedora 40 k ca-certificates  noarch 2020.2.41-7.fc34 fedora 353 k coreutils  x86_64 8.32-19.fc34 fedora 1.1 M coreutils-common  x86_64 8.32-19.fc34 fedora 2.0 M crypto-policies  noarch 20210213-1.git5c710c0.fc34 fedora 56 k curl  x86_64 7.75.0-1.fc34 copr_base 299 k cyrus-sasl-lib  x86_64 2.1.27-8.fc34 fedora 101 k dbus-libs  x86_64 1:1.12.20-3.fc34 copr_base 152 k dnf-data  noarch 4.6.0-1.fc34 fedora 47 k elfutils-default-yama-scope  noarch 0.183-1.fc34 fedora 17 k elfutils-libelf  x86_64 0.183-1.fc34 fedora 193 k elfutils-libs  x86_64 0.183-1.fc34 fedora 265 k expat  x86_64 2.2.10-2.fc34 copr_base 105 k fedora-gpg-keys  noarch 34-0.13 fedora 109 k fedora-release  noarch 34-0.13 fedora 11 k fedora-release-common  noarch 34-0.13 fedora 20 k fedora-release-identity-basic noarch 34-0.13 fedora 12 k fedora-repos  noarch 34-0.13 fedora 11 k file-libs  x86_64 5.39-5.fc34 copr_base 591 k filesystem  x86_64 3.14-5.fc34 fedora 1.1 M gawk  x86_64 5.1.0-3.fc34 fedora 1.0 M gdbm-libs  x86_64 1:1.19-2.fc34 copr_base 54 k glib2  x86_64 2.67.4-2.fc34 fedora 2.7 M glibc  x86_64 2.33-2.fc34 fedora 3.5 M glibc-common  x86_64 2.33-2.fc34 fedora 2.1 M glibc-minimal-langpack  x86_64 2.33-2.fc34 fedora 113 k gmp  x86_64 1:6.2.0-6.fc34 copr_base 320 k gnupg2  x86_64 2.2.27-2.fc34 fedora 2.3 M gnutls  x86_64 3.7.0-2.fc34 fedora 1.0 M gpgme  x86_64 1.15.1-2.fc34 fedora 207 k grep  x86_64 3.6-2.fc34 copr_base 260 k ima-evm-utils  x86_64 1.3.2-2.fc34 copr_base 62 k json-c  x86_64 0.14-8.fc34 fedora 42 k keyutils-libs  x86_64 1.6.1-2.fc34 fedora 31 k krb5-libs  x86_64 1.19.1-1.fc34 fedora 735 k libacl  x86_64 2.2.53-10.fc34 copr_base 24 k libarchive  x86_64 3.5.1-2.fc34 copr_base 393 k libassuan  x86_64 2.5.4-2.fc34 fedora 68 k libattr  x86_64 2.4.48-11.fc34 copr_base 18 k libblkid  x86_64 2.36.2-1.fc34 fedora 100 k libbrotli  x86_64 1.0.9-4.fc34 fedora 321 k libcap  x86_64 2.48-2.fc34 fedora 67 k libcap-ng  x86_64 0.8.2-4.fc34 fedora 33 k libcom_err  x86_64 1.45.6-5.fc34 fedora 27 k libcomps  x86_64 0.1.15-6.fc34 fedora 79 k libcurl  x86_64 7.75.0-1.fc34 copr_base 289 k libdb  x86_64 5.3.28-46.fc34 copr_base 757 k libdnf  x86_64 0.58.0-1.fc34 fedora 632 k libffi  x86_64 3.1-28.fc34 fedora 33 k libgcc  x86_64 11.0.0-0.19.fc34 fedora 93 k libgcrypt  x86_64 1.9.2-1.fc34 fedora 512 k libgomp  x86_64 11.0.0-0.19.fc34 fedora 264 k libgpg-error  x86_64 1.41-2.fc34 copr_base 213 k libidn2  x86_64 2.3.0-5.fc34 fedora 100 k libksba  x86_64 1.5.0-2.fc34 fedora 152 k libmetalink  x86_64 0.1.3-14.fc34 fedora 31 k libmodulemd  x86_64 2.12.0-2.fc34 fedora 234 k libmount  x86_64 2.36.2-1.fc34 fedora 131 k libnghttp2  x86_64 1.43.0-1.fc34 fedora 77 k libnsl2  x86_64 1.3.0-2.fc34 copr_base 59 k libpsl  x86_64 0.21.1-3.fc34 fedora 61 k librepo  x86_64 1.12.1-2.fc34 fedora 98 k libreport-filesystem  noarch 2.14.0-17.fc34 fedora 15 k libselinux  x86_64 3.2-0.rc2.1.fc34 fedora 84 k libsemanage  x86_64 3.2-0.rc2.1.fc34 fedora 116 k libsepol  x86_64 3.2-0.rc2.1.fc34 fedora 286 k libsigsegv  x86_64 2.13-2.fc34 copr_base 27 k libsmartcols  x86_64 2.36.2-1.fc34 fedora 60 k libsolv  x86_64 0.7.17-3.fc34 fedora 392 k libssh  x86_64 0.9.5-2.fc34 fedora 209 k libssh-config  noarch 0.9.5-2.fc34 fedora 10 k libstdc++  x86_64 11.0.0-0.19.fc34 fedora 697 k libtasn1  x86_64 4.16.0-4.fc34 fedora 74 k libtirpc  x86_64 1.3.1-1.fc34 copr_base 95 k libunistring  x86_64 0.9.10-10.fc34 fedora 517 k libusbx  x86_64 1.0.24-2.fc34 fedora 73 k libuuid  x86_64 2.36.2-1.fc34 fedora 25 k libverto  x86_64 0.3.1-3.fc34 copr_base 22 k libxcrypt  x86_64 4.4.18-1.fc34 fedora 118 k libxml2  x86_64 2.9.10-10.fc34 fedora 743 k libyaml  x86_64 0.2.5-5.fc34 copr_base 61 k libzstd  x86_64 1.4.7-2.fc34 fedora 340 k lua-libs  x86_64 5.4.2-2.fc34 copr_base 216 k lz4-libs  x86_64 1.9.3-2.fc34 fedora 67 k mpfr  x86_64 4.1.0-4.fc34 fedora 333 k ncurses-base  noarch 6.2-4.20200222.fc34 fedora 60 k ncurses-libs  x86_64 6.2-4.20200222.fc34 fedora 328 k nettle  x86_64 3.7-3.fc34 fedora 396 k npth  x86_64 1.6-6.fc34 fedora 25 k openldap  x86_64 2.4.57-2.fc34 fedora 261 k openssl-libs  x86_64 1:1.1.1i-3.fc34 fedora 1.4 M p11-kit  x86_64 0.23.22-3.fc34 fedora 369 k p11-kit-trust  x86_64 0.23.22-3.fc34 fedora 141 k pcre  x86_64 8.44-3.fc34.1 copr_base 200 k pcre2  x86_64 10.36-4.fc34 fedora 234 k pcre2-syntax  noarch 10.36-4.fc34 fedora 143 k popt  x86_64 1.18-3.fc34 fedora 59 k publicsuffix-list-dafsa  noarch 20190417-5.fc34 fedora 55 k python-pip-wheel  noarch 21.0.1-1.fc34 fedora 1.3 M python-setuptools-wheel  noarch 53.0.0-1.fc34 fedora 470 k python3  x86_64 3.9.2-1.fc34 fedora 28 k python3-dateutil  noarch 1:2.8.1-3.fc34 fedora 289 k python3-dbus  x86_64 1.2.16-4.fc34 copr_base 134 k python3-distro  noarch 1.5.0-5.fc34 fedora 36 k python3-dnf  noarch 4.6.0-1.fc34 fedora 414 k python3-dnf-plugins-core  noarch 4.0.19-1.fc34 fedora 197 k python3-gpg  x86_64 1.15.1-2.fc34 fedora 268 k python3-hawkey  x86_64 0.58.0-1.fc34 fedora 116 k python3-libcomps  x86_64 0.1.15-6.fc34 fedora 51 k python3-libdnf  x86_64 0.58.0-1.fc34 fedora 793 k python3-libs  x86_64 3.9.2-1.fc34 fedora 7.4 M python3-rpm  x86_64 4.16.1.2-6.fc34 copr_base 99 k python3-setuptools  noarch 53.0.0-1.fc34 fedora 842 k python3-six  noarch 1.15.0-4.fc34 fedora 37 k readline  x86_64 8.1-2.fc34 fedora 216 k rpm  x86_64 4.16.1.2-6.fc34 copr_base 500 k rpm-build-libs  x86_64 4.16.1.2-6.fc34 copr_base 98 k rpm-libs  x86_64 4.16.1.2-6.fc34 copr_base 320 k rpm-sign-libs  x86_64 4.16.1.2-6.fc34 copr_base 27 k sed  x86_64 4.8-7.fc34 copr_base 299 k setup  noarch 2.13.7-3.fc34 fedora 141 k shadow-utils  x86_64 2:4.8.1-7.fc34 copr_base 1.2 M sqlite-libs  x86_64 3.34.1-2.fc34 copr_base 627 k systemd-libs  x86_64 247.3-3.fc34 fedora 546 k tpm2-tss  x86_64 3.0.3-2.fc34 copr_base 577 k tzdata  noarch 2021a-1.fc34 fedora 432 k xz-libs  x86_64 5.2.5-5.fc34 fedora 92 k zchunk-libs  x86_64 1.1.9-2.fc34 fedora 46 k zlib  x86_64 1.2.11-24.fc34 copr_base 92 k Transaction Summary ================================================================================ Install 135 Packages Total download size: 54 M Installed size: 189 M Downloading Packages: (1/135): bash-5.1.4-1.fc34.x86_64.rpm 42 MB/s | 1.7 MB 00:00 (2/135): dbus-libs-1.12.20-3.fc34.x86_64.rpm 3.5 MB/s | 152 kB 00:00 (3/135): curl-7.75.0-1.fc34.x86_64.rpm 6.5 MB/s | 299 kB 00:00 (4/135): expat-2.2.10-2.fc34.x86_64.rpm 19 MB/s | 105 kB 00:00 (5/135): gdbm-libs-1.19-2.fc34.x86_64.rpm 13 MB/s | 54 kB 00:00 (6/135): gmp-6.2.0-6.fc34.x86_64.rpm 34 MB/s | 320 kB 00:00 (7/135): file-libs-5.39-5.fc34.x86_64.rpm 37 MB/s | 591 kB 00:00 (8/135): grep-3.6-2.fc34.x86_64.rpm 23 MB/s | 260 kB 00:00 (9/135): ima-evm-utils-1.3.2-2.fc34.x86_64.rpm 11 MB/s | 62 kB 00:00 (10/135): libacl-2.2.53-10.fc34.x86_64.rpm 7.9 MB/s | 24 kB 00:00 (11/135): libattr-2.4.48-11.fc34.x86_64.rpm 8.1 MB/s | 18 kB 00:00 (12/135): libcurl-7.75.0-1.fc34.x86_64.rpm 40 MB/s | 289 kB 00:00 (13/135): libarchive-3.5.1-2.fc34.x86_64.rpm 36 MB/s | 393 kB 00:00 (14/135): libgpg-error-1.41-2.fc34.x86_64.rpm 37 MB/s | 213 kB 00:00 (15/135): libnsl2-1.3.0-2.fc34.x86_64.rpm 14 MB/s | 59 kB 00:00 (16/135): libdb-5.3.28-46.fc34.x86_64.rpm 43 MB/s | 757 kB 00:00 (17/135): libsigsegv-2.13-2.fc34.x86_64.rpm 4.6 MB/s | 27 kB 00:00 (18/135): libtirpc-1.3.1-1.fc34.x86_64.rpm 18 MB/s | 95 kB 00:00 (19/135): libverto-0.3.1-3.fc34.x86_64.rpm 8.4 MB/s | 22 kB 00:00 (20/135): libyaml-0.2.5-5.fc34.x86_64.rpm 18 MB/s | 61 kB 00:00 (21/135): lua-libs-5.4.2-2.fc34.x86_64.rpm 36 MB/s | 216 kB 00:00 (22/135): pcre-8.44-3.fc34.1.x86_64.rpm 28 MB/s | 200 kB 00:00 (23/135): python3-dbus-1.2.16-4.fc34.x86_64.rpm 22 MB/s | 134 kB 00:00 (24/135): python3-rpm-4.16.1.2-6.fc34.x86_64.rp 23 MB/s | 99 kB 00:00 (25/135): rpm-build-libs-4.16.1.2-6.fc34.x86_64 19 MB/s | 98 kB 00:00 (26/135): rpm-4.16.1.2-6.fc34.x86_64.rpm 40 MB/s | 500 kB 00:00 (27/135): rpm-libs-4.16.1.2-6.fc34.x86_64.rpm 28 MB/s | 320 kB 00:00 (28/135): rpm-sign-libs-4.16.1.2-6.fc34.x86_64. 3.8 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dnf-data-4.6.0-1.fc34.noarch.rpm 427 kB/s | 47 kB 00:00 (44/135): dnf-4.6.0-1.fc34.noarch.rpm 3.4 MB/s | 446 kB 00:00 (45/135): elfutils-default-yama-scope-0.183-1.f 1.0 MB/s | 17 kB 00:00 (46/135): elfutils-libelf-0.183-1.fc34.x86_64.r 5.6 MB/s | 193 kB 00:00 (47/135): elfutils-libs-0.183-1.fc34.x86_64.rpm 7.3 MB/s | 265 kB 00:00 (48/135): fedora-gpg-keys-34-0.13.noarch.rpm 7.1 MB/s | 109 kB 00:00 (49/135): fedora-release-34-0.13.noarch.rpm 740 kB/s | 11 kB 00:00 (50/135): fedora-release-common-34-0.13.noarch. 187 kB/s | 20 kB 00:00 (51/135): fedora-release-identity-basic-34-0.13 109 kB/s | 12 kB 00:00 (52/135): dnf-plugins-core-4.0.19-1.fc34.noarch 147 kB/s | 35 kB 00:00 (53/135): fedora-repos-34-0.13.noarch.rpm 331 kB/s | 11 kB 00:00 (54/135): filesystem-3.14-5.fc34.x86_64.rpm 21 MB/s | 1.1 MB 00:00 (55/135): glibc-2.33-2.fc34.x86_64.rpm 38 MB/s | 3.5 MB 00:00 (56/135): glib2-2.67.4-2.fc34.x86_64.rpm 17 MB/s | 2.7 MB 00:00 (57/135): glibc-common-2.33-2.fc34.x86_64.rpm 32 MB/s | 2.1 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setup-2.13.7-3.fc34.noarch.rpm 4.6 MB/s | 141 kB 00:00 (131/135): systemd-libs-247.3-3.fc34.x86_64.rpm 18 MB/s | 546 kB 00:00 (132/135): tzdata-2021a-1.fc34.noarch.rpm 12 MB/s | 432 kB 00:00 (133/135): xz-libs-5.2.5-5.fc34.x86_64.rpm 1.2 MB/s | 92 kB 00:00 (134/135): python3-libs-3.9.2-1.fc34.x86_64.rpm 22 MB/s | 7.4 MB 00:00 (135/135): zchunk-libs-1.1.9-2.fc34.x86_64.rpm 308 kB/s | 46 kB 00:00 -------------------------------------------------------------------------------- Total 18 MB/s | 54 MB 00:03 warning: /var/lib/mock/fedora-34-x86_64-bootstrap-1614002910.079767/root/var/cache/dnf/fedora-e21c25ac3662d294/packages/alternatives-1.15-2.fc34.x86_64.rpm: Header V4 RSA/SHA256 Signature, key ID 45719a39: NOKEY fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x45719A39: Userid : "Fedora (34) " Fingerprint: 8C5B A699 0BDB 26E1 9F2A 1A80 1161 AE69 4571 9A39 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-34-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-5.fc34.x86_64 1/1 Preparing : 1/1 Installing : libgcc-11.0.0-0.19.fc34.x86_64 1/135 Running scriptlet: libgcc-11.0.0-0.19.fc34.x86_64 1/135 Installing : crypto-policies-20210213-1.git5c710c0.fc34.noarc 2/135 Running scriptlet: crypto-policies-20210213-1.git5c710c0.fc34.noarc 2/135 Installing : tzdata-2021a-1.fc34.noarch 3/135 Installing : fedora-release-identity-basic-34-0.13.noarch 4/135 Installing : python-setuptools-wheel-53.0.0-1.fc34.noarch 5/135 Installing : publicsuffix-list-dafsa-20190417-5.fc34.noarch 6/135 Installing : pcre2-syntax-10.36-4.fc34.noarch 7/135 Installing : ncurses-base-6.2-4.20200222.fc34.noarch 8/135 Installing : libssh-config-0.9.5-2.fc34.noarch 9/135 Installing : libreport-filesystem-2.14.0-17.fc34.noarch 10/135 Installing : dnf-data-4.6.0-1.fc34.noarch 11/135 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-34-0.13.noarch 12/135 Installing : 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dnf-4.6.0-1.fc34.noarch 135/135 Running scriptlet: filesystem-3.14-5.fc34.x86_64 135/135 Running scriptlet: ca-certificates-2020.2.41-7.fc34.noarch 135/135 Running scriptlet: rpm-4.16.1.2-6.fc34.x86_64 135/135 Running scriptlet: dnf-4.6.0-1.fc34.noarch 135/135 Verifying : bash-5.1.4-1.fc34.x86_64 1/135 Verifying : curl-7.75.0-1.fc34.x86_64 2/135 Verifying : dbus-libs-1:1.12.20-3.fc34.x86_64 3/135 Verifying : expat-2.2.10-2.fc34.x86_64 4/135 Verifying : file-libs-5.39-5.fc34.x86_64 5/135 Verifying : gdbm-libs-1:1.19-2.fc34.x86_64 6/135 Verifying : gmp-1:6.2.0-6.fc34.x86_64 7/135 Verifying : grep-3.6-2.fc34.x86_64 8/135 Verifying : ima-evm-utils-1.3.2-2.fc34.x86_64 9/135 Verifying : libacl-2.2.53-10.fc34.x86_64 10/135 Verifying : libarchive-3.5.1-2.fc34.x86_64 11/135 Verifying : libattr-2.4.48-11.fc34.x86_64 12/135 Verifying : libcurl-7.75.0-1.fc34.x86_64 13/135 Verifying : libdb-5.3.28-46.fc34.x86_64 14/135 Verifying : libgpg-error-1.41-2.fc34.x86_64 15/135 Verifying : libnsl2-1.3.0-2.fc34.x86_64 16/135 Verifying : libsigsegv-2.13-2.fc34.x86_64 17/135 Verifying : libtirpc-1.3.1-1.fc34.x86_64 18/135 Verifying : libverto-0.3.1-3.fc34.x86_64 19/135 Verifying : libyaml-0.2.5-5.fc34.x86_64 20/135 Verifying : lua-libs-5.4.2-2.fc34.x86_64 21/135 Verifying : pcre-8.44-3.fc34.1.x86_64 22/135 Verifying : python3-dbus-1.2.16-4.fc34.x86_64 23/135 Verifying : python3-rpm-4.16.1.2-6.fc34.x86_64 24/135 Verifying : rpm-4.16.1.2-6.fc34.x86_64 25/135 Verifying : rpm-build-libs-4.16.1.2-6.fc34.x86_64 26/135 Verifying : rpm-libs-4.16.1.2-6.fc34.x86_64 27/135 Verifying : rpm-sign-libs-4.16.1.2-6.fc34.x86_64 28/135 Verifying : sed-4.8-7.fc34.x86_64 29/135 Verifying : shadow-utils-2:4.8.1-7.fc34.x86_64 30/135 Verifying : sqlite-libs-3.34.1-2.fc34.x86_64 31/135 Verifying : tpm2-tss-3.0.3-2.fc34.x86_64 32/135 Verifying : zlib-1.2.11-24.fc34.x86_64 33/135 Verifying : alternatives-1.15-2.fc34.x86_64 34/135 Verifying : audit-libs-3.0.1-2.fc34.x86_64 35/135 Verifying : basesystem-11-11.fc34.noarch 36/135 Verifying : bzip2-libs-1.0.8-6.fc34.x86_64 37/135 Verifying : ca-certificates-2020.2.41-7.fc34.noarch 38/135 Verifying : coreutils-8.32-19.fc34.x86_64 39/135 Verifying : coreutils-common-8.32-19.fc34.x86_64 40/135 Verifying : crypto-policies-20210213-1.git5c710c0.fc34.noarc 41/135 Verifying : cyrus-sasl-lib-2.1.27-8.fc34.x86_64 42/135 Verifying : dnf-4.6.0-1.fc34.noarch 43/135 Verifying : dnf-data-4.6.0-1.fc34.noarch 44/135 Verifying : dnf-plugins-core-4.0.19-1.fc34.noarch 45/135 Verifying : elfutils-default-yama-scope-0.183-1.fc34.noarch 46/135 Verifying : elfutils-libelf-0.183-1.fc34.x86_64 47/135 Verifying : elfutils-libs-0.183-1.fc34.x86_64 48/135 Verifying : fedora-gpg-keys-34-0.13.noarch 49/135 Verifying : fedora-release-34-0.13.noarch 50/135 Verifying : fedora-release-common-34-0.13.noarch 51/135 Verifying : fedora-release-identity-basic-34-0.13.noarch 52/135 Verifying : fedora-repos-34-0.13.noarch 53/135 Verifying : filesystem-3.14-5.fc34.x86_64 54/135 Verifying : gawk-5.1.0-3.fc34.x86_64 55/135 Verifying : glib2-2.67.4-2.fc34.x86_64 56/135 Verifying : glibc-2.33-2.fc34.x86_64 57/135 Verifying : glibc-common-2.33-2.fc34.x86_64 58/135 Verifying : glibc-minimal-langpack-2.33-2.fc34.x86_64 59/135 Verifying : gnupg2-2.2.27-2.fc34.x86_64 60/135 Verifying : gnutls-3.7.0-2.fc34.x86_64 61/135 Verifying : gpgme-1.15.1-2.fc34.x86_64 62/135 Verifying : json-c-0.14-8.fc34.x86_64 63/135 Verifying : keyutils-libs-1.6.1-2.fc34.x86_64 64/135 Verifying : krb5-libs-1.19.1-1.fc34.x86_64 65/135 Verifying : libassuan-2.5.4-2.fc34.x86_64 66/135 Verifying : libblkid-2.36.2-1.fc34.x86_64 67/135 Verifying : libbrotli-1.0.9-4.fc34.x86_64 68/135 Verifying : libcap-2.48-2.fc34.x86_64 69/135 Verifying : libcap-ng-0.8.2-4.fc34.x86_64 70/135 Verifying : libcom_err-1.45.6-5.fc34.x86_64 71/135 Verifying : libcomps-0.1.15-6.fc34.x86_64 72/135 Verifying : libdnf-0.58.0-1.fc34.x86_64 73/135 Verifying : libffi-3.1-28.fc34.x86_64 74/135 Verifying : libgcc-11.0.0-0.19.fc34.x86_64 75/135 Verifying : libgcrypt-1.9.2-1.fc34.x86_64 76/135 Verifying : libgomp-11.0.0-0.19.fc34.x86_64 77/135 Verifying : libidn2-2.3.0-5.fc34.x86_64 78/135 Verifying : libksba-1.5.0-2.fc34.x86_64 79/135 Verifying : libmetalink-0.1.3-14.fc34.x86_64 80/135 Verifying : libmodulemd-2.12.0-2.fc34.x86_64 81/135 Verifying : libmount-2.36.2-1.fc34.x86_64 82/135 Verifying : libnghttp2-1.43.0-1.fc34.x86_64 83/135 Verifying : libpsl-0.21.1-3.fc34.x86_64 84/135 Verifying : librepo-1.12.1-2.fc34.x86_64 85/135 Verifying : libreport-filesystem-2.14.0-17.fc34.noarch 86/135 Verifying : libselinux-3.2-0.rc2.1.fc34.x86_64 87/135 Verifying : libsemanage-3.2-0.rc2.1.fc34.x86_64 88/135 Verifying : libsepol-3.2-0.rc2.1.fc34.x86_64 89/135 Verifying : libsmartcols-2.36.2-1.fc34.x86_64 90/135 Verifying : libsolv-0.7.17-3.fc34.x86_64 91/135 Verifying : libssh-0.9.5-2.fc34.x86_64 92/135 Verifying : libssh-config-0.9.5-2.fc34.noarch 93/135 Verifying : libstdc++-11.0.0-0.19.fc34.x86_64 94/135 Verifying : libtasn1-4.16.0-4.fc34.x86_64 95/135 Verifying : libunistring-0.9.10-10.fc34.x86_64 96/135 Verifying : libusbx-1.0.24-2.fc34.x86_64 97/135 Verifying : libuuid-2.36.2-1.fc34.x86_64 98/135 Verifying : libxcrypt-4.4.18-1.fc34.x86_64 99/135 Verifying : libxml2-2.9.10-10.fc34.x86_64 100/135 Verifying : libzstd-1.4.7-2.fc34.x86_64 101/135 Verifying : lz4-libs-1.9.3-2.fc34.x86_64 102/135 Verifying : mpfr-4.1.0-4.fc34.x86_64 103/135 Verifying : ncurses-base-6.2-4.20200222.fc34.noarch 104/135 Verifying : ncurses-libs-6.2-4.20200222.fc34.x86_64 105/135 Verifying : nettle-3.7-3.fc34.x86_64 106/135 Verifying : npth-1.6-6.fc34.x86_64 107/135 Verifying : openldap-2.4.57-2.fc34.x86_64 108/135 Verifying : openssl-libs-1:1.1.1i-3.fc34.x86_64 109/135 Verifying : p11-kit-0.23.22-3.fc34.x86_64 110/135 Verifying : p11-kit-trust-0.23.22-3.fc34.x86_64 111/135 Verifying : pcre2-10.36-4.fc34.x86_64 112/135 Verifying : pcre2-syntax-10.36-4.fc34.noarch 113/135 Verifying : popt-1.18-3.fc34.x86_64 114/135 Verifying : publicsuffix-list-dafsa-20190417-5.fc34.noarch 115/135 Verifying : python-pip-wheel-21.0.1-1.fc34.noarch 116/135 Verifying : python-setuptools-wheel-53.0.0-1.fc34.noarch 117/135 Verifying : python3-3.9.2-1.fc34.x86_64 118/135 Verifying : python3-dateutil-1:2.8.1-3.fc34.noarch 119/135 Verifying : python3-distro-1.5.0-5.fc34.noarch 120/135 Verifying : python3-dnf-4.6.0-1.fc34.noarch 121/135 Verifying : python3-dnf-plugins-core-4.0.19-1.fc34.noarch 122/135 Verifying : python3-gpg-1.15.1-2.fc34.x86_64 123/135 Verifying : python3-hawkey-0.58.0-1.fc34.x86_64 124/135 Verifying : python3-libcomps-0.1.15-6.fc34.x86_64 125/135 Verifying : python3-libdnf-0.58.0-1.fc34.x86_64 126/135 Verifying : python3-libs-3.9.2-1.fc34.x86_64 127/135 Verifying : python3-setuptools-53.0.0-1.fc34.noarch 128/135 Verifying : python3-six-1.15.0-4.fc34.noarch 129/135 Verifying : readline-8.1-2.fc34.x86_64 130/135 Verifying : setup-2.13.7-3.fc34.noarch 131/135 Verifying : systemd-libs-247.3-3.fc34.x86_64 132/135 Verifying : tzdata-2021a-1.fc34.noarch 133/135 Verifying : xz-libs-5.2.5-5.fc34.x86_64 134/135 Verifying : zchunk-libs-1.1.9-2.fc34.x86_64 135/135 Installed: alternatives-1.15-2.fc34.x86_64 audit-libs-3.0.1-2.fc34.x86_64 basesystem-11-11.fc34.noarch bash-5.1.4-1.fc34.x86_64 bzip2-libs-1.0.8-6.fc34.x86_64 ca-certificates-2020.2.41-7.fc34.noarch coreutils-8.32-19.fc34.x86_64 coreutils-common-8.32-19.fc34.x86_64 crypto-policies-20210213-1.git5c710c0.fc34.noarch curl-7.75.0-1.fc34.x86_64 cyrus-sasl-lib-2.1.27-8.fc34.x86_64 dbus-libs-1:1.12.20-3.fc34.x86_64 dnf-4.6.0-1.fc34.noarch dnf-data-4.6.0-1.fc34.noarch dnf-plugins-core-4.0.19-1.fc34.noarch elfutils-default-yama-scope-0.183-1.fc34.noarch elfutils-libelf-0.183-1.fc34.x86_64 elfutils-libs-0.183-1.fc34.x86_64 expat-2.2.10-2.fc34.x86_64 fedora-gpg-keys-34-0.13.noarch fedora-release-34-0.13.noarch fedora-release-common-34-0.13.noarch fedora-release-identity-basic-34-0.13.noarch fedora-repos-34-0.13.noarch file-libs-5.39-5.fc34.x86_64 filesystem-3.14-5.fc34.x86_64 gawk-5.1.0-3.fc34.x86_64 gdbm-libs-1:1.19-2.fc34.x86_64 glib2-2.67.4-2.fc34.x86_64 glibc-2.33-2.fc34.x86_64 glibc-common-2.33-2.fc34.x86_64 glibc-minimal-langpack-2.33-2.fc34.x86_64 gmp-1:6.2.0-6.fc34.x86_64 gnupg2-2.2.27-2.fc34.x86_64 gnutls-3.7.0-2.fc34.x86_64 gpgme-1.15.1-2.fc34.x86_64 grep-3.6-2.fc34.x86_64 ima-evm-utils-1.3.2-2.fc34.x86_64 json-c-0.14-8.fc34.x86_64 keyutils-libs-1.6.1-2.fc34.x86_64 krb5-libs-1.19.1-1.fc34.x86_64 libacl-2.2.53-10.fc34.x86_64 libarchive-3.5.1-2.fc34.x86_64 libassuan-2.5.4-2.fc34.x86_64 libattr-2.4.48-11.fc34.x86_64 libblkid-2.36.2-1.fc34.x86_64 libbrotli-1.0.9-4.fc34.x86_64 libcap-2.48-2.fc34.x86_64 libcap-ng-0.8.2-4.fc34.x86_64 libcom_err-1.45.6-5.fc34.x86_64 libcomps-0.1.15-6.fc34.x86_64 libcurl-7.75.0-1.fc34.x86_64 libdb-5.3.28-46.fc34.x86_64 libdnf-0.58.0-1.fc34.x86_64 libffi-3.1-28.fc34.x86_64 libgcc-11.0.0-0.19.fc34.x86_64 libgcrypt-1.9.2-1.fc34.x86_64 libgomp-11.0.0-0.19.fc34.x86_64 libgpg-error-1.41-2.fc34.x86_64 libidn2-2.3.0-5.fc34.x86_64 libksba-1.5.0-2.fc34.x86_64 libmetalink-0.1.3-14.fc34.x86_64 libmodulemd-2.12.0-2.fc34.x86_64 libmount-2.36.2-1.fc34.x86_64 libnghttp2-1.43.0-1.fc34.x86_64 libnsl2-1.3.0-2.fc34.x86_64 libpsl-0.21.1-3.fc34.x86_64 librepo-1.12.1-2.fc34.x86_64 libreport-filesystem-2.14.0-17.fc34.noarch libselinux-3.2-0.rc2.1.fc34.x86_64 libsemanage-3.2-0.rc2.1.fc34.x86_64 libsepol-3.2-0.rc2.1.fc34.x86_64 libsigsegv-2.13-2.fc34.x86_64 libsmartcols-2.36.2-1.fc34.x86_64 libsolv-0.7.17-3.fc34.x86_64 libssh-0.9.5-2.fc34.x86_64 libssh-config-0.9.5-2.fc34.noarch libstdc++-11.0.0-0.19.fc34.x86_64 libtasn1-4.16.0-4.fc34.x86_64 libtirpc-1.3.1-1.fc34.x86_64 libunistring-0.9.10-10.fc34.x86_64 libusbx-1.0.24-2.fc34.x86_64 libuuid-2.36.2-1.fc34.x86_64 libverto-0.3.1-3.fc34.x86_64 libxcrypt-4.4.18-1.fc34.x86_64 libxml2-2.9.10-10.fc34.x86_64 libyaml-0.2.5-5.fc34.x86_64 libzstd-1.4.7-2.fc34.x86_64 lua-libs-5.4.2-2.fc34.x86_64 lz4-libs-1.9.3-2.fc34.x86_64 mpfr-4.1.0-4.fc34.x86_64 ncurses-base-6.2-4.20200222.fc34.noarch ncurses-libs-6.2-4.20200222.fc34.x86_64 nettle-3.7-3.fc34.x86_64 npth-1.6-6.fc34.x86_64 openldap-2.4.57-2.fc34.x86_64 openssl-libs-1:1.1.1i-3.fc34.x86_64 p11-kit-0.23.22-3.fc34.x86_64 p11-kit-trust-0.23.22-3.fc34.x86_64 pcre-8.44-3.fc34.1.x86_64 pcre2-10.36-4.fc34.x86_64 pcre2-syntax-10.36-4.fc34.noarch popt-1.18-3.fc34.x86_64 publicsuffix-list-dafsa-20190417-5.fc34.noarch python-pip-wheel-21.0.1-1.fc34.noarch python-setuptools-wheel-53.0.0-1.fc34.noarch python3-3.9.2-1.fc34.x86_64 python3-dateutil-1:2.8.1-3.fc34.noarch python3-dbus-1.2.16-4.fc34.x86_64 python3-distro-1.5.0-5.fc34.noarch python3-dnf-4.6.0-1.fc34.noarch python3-dnf-plugins-core-4.0.19-1.fc34.noarch python3-gpg-1.15.1-2.fc34.x86_64 python3-hawkey-0.58.0-1.fc34.x86_64 python3-libcomps-0.1.15-6.fc34.x86_64 python3-libdnf-0.58.0-1.fc34.x86_64 python3-libs-3.9.2-1.fc34.x86_64 python3-rpm-4.16.1.2-6.fc34.x86_64 python3-setuptools-53.0.0-1.fc34.noarch python3-six-1.15.0-4.fc34.noarch readline-8.1-2.fc34.x86_64 rpm-4.16.1.2-6.fc34.x86_64 rpm-build-libs-4.16.1.2-6.fc34.x86_64 rpm-libs-4.16.1.2-6.fc34.x86_64 rpm-sign-libs-4.16.1.2-6.fc34.x86_64 sed-4.8-7.fc34.x86_64 setup-2.13.7-3.fc34.noarch shadow-utils-2:4.8.1-7.fc34.x86_64 sqlite-libs-3.34.1-2.fc34.x86_64 systemd-libs-247.3-3.fc34.x86_64 tpm2-tss-3.0.3-2.fc34.x86_64 tzdata-2021a-1.fc34.noarch xz-libs-5.2.5-5.fc34.x86_64 zchunk-libs-1.1.9-2.fc34.x86_64 zlib-1.2.11-24.fc34.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-34-x86_64-1614002910.079767/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.9 INFO: Mock Version: 2.9 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk Copr repository 164 kB/s | 3.0 kB 00:00 Copr repository 90 MB/s | 8.7 MB 00:00 fedora 259 kB/s | 12 kB 00:00 fedora 1.5 MB/s | 1.7 MB 00:01 updates 293 kB/s | 13 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash  x86_64 5.1.4-1.fc34 copr_base 1.7 M bzip2  x86_64 1.0.8-6.fc34 fedora 53 k coreutils  x86_64 8.32-19.fc34 fedora 1.1 M cpio  x86_64 2.13-9.fc34 copr_base 274 k diffutils  x86_64 3.7-8.fc34 copr_base 391 k fedora-release-common  noarch 34-0.13 fedora 20 k findutils  x86_64 1:4.8.0-2.fc34 fedora 545 k gawk  x86_64 5.1.0-3.fc34 fedora 1.0 M glibc-minimal-langpack  x86_64 2.33-2.fc34 fedora 113 k grep  x86_64 3.6-2.fc34 copr_base 260 k gzip  x86_64 1.10-4.fc34 copr_base 152 k info  x86_64 6.7-10.fc34 fedora 227 k patch  x86_64 2.7.6-14.fc34 copr_base 130 k redhat-rpm-config  noarch 180-1.fc34 fedora 71 k rpm-build  x86_64 4.16.1.2-6.fc34 copr_base 100 k sed  x86_64 4.8-7.fc34 copr_base 299 k shadow-utils  x86_64 2:4.8.1-7.fc34 copr_base 1.2 M tar  x86_64 2:1.34-1.fc34 fedora 896 k unzip  x86_64 6.0-50.fc34 fedora 181 k util-linux  x86_64 2.36.2-1.fc34 fedora 2.6 M which  x86_64 2.21-21.fc34 fedora 41 k xz  x86_64 5.2.5-5.fc34 fedora 216 k Installing dependencies: alternatives  x86_64 1.15-2.fc34 fedora 35 k audit-libs  x86_64 3.0.1-2.fc34 fedora 115 k basesystem  noarch 11-11.fc34 fedora 7.0 k binutils  x86_64 2.35.1-36.fc34 fedora 5.7 M binutils-gold  x86_64 2.35.1-36.fc34 fedora 748 k bzip2-libs  x86_64 1.0.8-6.fc34 fedora 40 k ca-certificates  noarch 2020.2.41-7.fc34 fedora 353 k coreutils-common  x86_64 8.32-19.fc34 fedora 2.0 M cracklib  x86_64 2.9.6-25.fc34 fedora 83 k crypto-policies  noarch 20210213-1.git5c710c0.fc34 fedora 56 k curl  x86_64 7.75.0-1.fc34 copr_base 299 k cyrus-sasl-lib  x86_64 2.1.27-8.fc34 fedora 101 k dwz  x86_64 0.13-8.fc34 fedora 126 k ed  x86_64 1.14.2-10.fc34 fedora 75 k efi-srpm-macros  noarch 4-6.fc34 fedora 21 k elfutils  x86_64 0.183-1.fc34 fedora 528 k elfutils-debuginfod-client  x86_64 0.183-1.fc34 fedora 34 k elfutils-default-yama-scope  noarch 0.183-1.fc34 fedora 17 k elfutils-libelf  x86_64 0.183-1.fc34 fedora 193 k elfutils-libs  x86_64 0.183-1.fc34 fedora 265 k expat  x86_64 2.2.10-2.fc34 copr_base 105 k fedora-gpg-keys  noarch 34-0.13 fedora 109 k fedora-release  noarch 34-0.13 fedora 11 k fedora-release-identity-basic noarch 34-0.13 fedora 12 k fedora-repos  noarch 34-0.13 fedora 11 k file  x86_64 5.39-5.fc34 copr_base 52 k file-libs  x86_64 5.39-5.fc34 copr_base 591 k filesystem  x86_64 3.14-5.fc34 fedora 1.1 M fonts-srpm-macros  noarch 1:2.0.5-5.fc34 fedora 27 k fpc-srpm-macros  noarch 1.3-3.fc34 fedora 7.7 k gdb-minimal  x86_64 10.1-6.fc34 fedora 3.6 M ghc-srpm-macros  noarch 1.5.0-4.fc34 fedora 7.8 k glibc  x86_64 2.33-2.fc34 fedora 3.5 M glibc-common  x86_64 2.33-2.fc34 fedora 2.1 M gmp  x86_64 1:6.2.0-6.fc34 copr_base 320 k gnat-srpm-macros  noarch 4-13.fc34 fedora 8.3 k go-srpm-macros  noarch 3.0.9-3.fc34 fedora 25 k kernel-srpm-macros  noarch 1.0-4.fc34 fedora 7.3 k keyutils-libs  x86_64 1.6.1-2.fc34 fedora 31 k krb5-libs  x86_64 1.19.1-1.fc34 fedora 735 k libacl  x86_64 2.2.53-10.fc34 copr_base 24 k libarchive  x86_64 3.5.1-2.fc34 copr_base 393 k libattr  x86_64 2.4.48-11.fc34 copr_base 18 k libblkid  x86_64 2.36.2-1.fc34 fedora 100 k libbrotli  x86_64 1.0.9-4.fc34 fedora 321 k libcap  x86_64 2.48-2.fc34 fedora 67 k libcap-ng  x86_64 0.8.2-4.fc34 fedora 33 k libcom_err  x86_64 1.45.6-5.fc34 fedora 27 k libcurl  x86_64 7.75.0-1.fc34 copr_base 289 k libdb  x86_64 5.3.28-46.fc34 copr_base 757 k libeconf  x86_64 0.3.8-5.fc34 fedora 24 k libfdisk  x86_64 2.36.2-1.fc34 fedora 152 k libffi  x86_64 3.1-28.fc34 fedora 33 k libgcc  x86_64 11.0.0-0.19.fc34 fedora 93 k libgcrypt  x86_64 1.9.2-1.fc34 fedora 512 k libgomp  x86_64 11.0.0-0.19.fc34 fedora 264 k libgpg-error  x86_64 1.41-2.fc34 copr_base 213 k libidn2  x86_64 2.3.0-5.fc34 fedora 100 k libmetalink  x86_64 0.1.3-14.fc34 fedora 31 k libmount  x86_64 2.36.2-1.fc34 fedora 131 k libnghttp2  x86_64 1.43.0-1.fc34 fedora 77 k libnsl2  x86_64 1.3.0-2.fc34 copr_base 59 k libpkgconf  x86_64 1.7.3-6.fc34 copr_base 37 k libpsl  x86_64 0.21.1-3.fc34 fedora 61 k libpwquality  x86_64 1.4.4-2.fc34 fedora 104 k libselinux  x86_64 3.2-0.rc2.1.fc34 fedora 84 k libsemanage  x86_64 3.2-0.rc2.1.fc34 fedora 116 k libsepol  x86_64 3.2-0.rc2.1.fc34 fedora 286 k libsigsegv  x86_64 2.13-2.fc34 copr_base 27 k libsmartcols  x86_64 2.36.2-1.fc34 fedora 60 k libssh  x86_64 0.9.5-2.fc34 fedora 209 k libssh-config  noarch 0.9.5-2.fc34 fedora 10 k libstdc++  x86_64 11.0.0-0.19.fc34 fedora 697 k libtasn1  x86_64 4.16.0-4.fc34 fedora 74 k libtirpc  x86_64 1.3.1-1.fc34 copr_base 95 k libunistring  x86_64 0.9.10-10.fc34 fedora 517 k libutempter  x86_64 1.2.1-4.fc34 fedora 26 k libuuid  x86_64 2.36.2-1.fc34 fedora 25 k libverto  x86_64 0.3.1-3.fc34 copr_base 22 k libxcrypt  x86_64 4.4.18-1.fc34 fedora 118 k libxml2  x86_64 2.9.10-10.fc34 fedora 743 k libzstd  x86_64 1.4.7-2.fc34 fedora 340 k lua-libs  x86_64 5.4.2-2.fc34 copr_base 216 k lua-srpm-macros  noarch 1-4.fc34 fedora 8.3 k lz4-libs  x86_64 1.9.3-2.fc34 fedora 67 k mpfr  x86_64 4.1.0-4.fc34 fedora 333 k ncurses-base  noarch 6.2-4.20200222.fc34 fedora 60 k ncurses-libs  x86_64 6.2-4.20200222.fc34 fedora 328 k nim-srpm-macros  noarch 3-4.fc34 fedora 8.4 k ocaml-srpm-macros  noarch 6-4.fc34 fedora 7.8 k openblas-srpm-macros  noarch 2-9.fc34 fedora 7.4 k openldap  x86_64 2.4.57-2.fc34 fedora 261 k openssl-libs  x86_64 1:1.1.1i-3.fc34 fedora 1.4 M p11-kit  x86_64 0.23.22-3.fc34 fedora 369 k p11-kit-trust  x86_64 0.23.22-3.fc34 fedora 141 k pam  x86_64 1.5.1-3.fc34 copr_base 545 k pcre  x86_64 8.44-3.fc34.1 copr_base 200 k pcre2  x86_64 10.36-4.fc34 fedora 234 k pcre2-syntax  noarch 10.36-4.fc34 fedora 143 k perl-srpm-macros  noarch 1-39.fc34 fedora 8.5 k pkgconf  x86_64 1.7.3-6.fc34 copr_base 41 k pkgconf-m4  noarch 1.7.3-6.fc34 copr_base 15 k pkgconf-pkg-config  x86_64 1.7.3-6.fc34 copr_base 11 k popt  x86_64 1.18-3.fc34 fedora 59 k publicsuffix-list-dafsa  noarch 20190417-5.fc34 fedora 55 k python-srpm-macros  noarch 3.9-34.fc34 fedora 21 k qt5-srpm-macros  noarch 5.15.2-2.fc34 fedora 8.4 k readline  x86_64 8.1-2.fc34 fedora 216 k rpm  x86_64 4.16.1.2-6.fc34 copr_base 500 k rpm-build-libs  x86_64 4.16.1.2-6.fc34 copr_base 98 k rpm-libs  x86_64 4.16.1.2-6.fc34 copr_base 320 k rust-srpm-macros  noarch 17-2.fc34 fedora 9.8 k setup  noarch 2.13.7-3.fc34 fedora 141 k sqlite-libs  x86_64 3.34.1-2.fc34 copr_base 627 k systemd-libs  x86_64 247.3-3.fc34 fedora 546 k tzdata  noarch 2021a-1.fc34 fedora 432 k xxhash-libs  x86_64 0.8.0-2.fc34 fedora 41 k xz-libs  x86_64 5.2.5-5.fc34 fedora 92 k zip  x86_64 3.0-28.fc34 fedora 260 k zlib  x86_64 1.2.11-24.fc34 copr_base 92 k zstd  x86_64 1.4.7-2.fc34 fedora 569 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 143 Packages Total size: 50 M Total download size: 1.7 M Installed size: 182 M Downloading Packages: [SKIPPED] cpio-2.13-9.fc34.x86_64.rpm: Already downloaded [SKIPPED] curl-7.75.0-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.7-8.fc34.x86_64.rpm: Already downloaded [SKIPPED] expat-2.2.10-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] file-5.39-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.39-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.0-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] grep-3.6-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.10-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.2.53-10.fc34.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.5.1-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.4.48-11.fc34.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.75.0-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-46.fc34.x86_64.rpm: Already downloaded [SKIPPED] libgpg-error-1.41-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-1.3.0-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.7.3-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.13-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.1-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.1-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.2-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] pam-1.5.1-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-14.fc34.x86_64.rpm: Already downloaded [SKIPPED] pcre-8.44-3.fc34.1.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-1.7.3-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.7.3-6.fc34.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.7.3-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] rpm-4.16.1.2-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.16.1.2-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.16.1.2-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.16.1.2-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] sed-4.8-7.fc34.x86_64.rpm: Already downloaded [SKIPPED] shadow-utils-4.8.1-7.fc34.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.34.1-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.11-24.fc34.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.15-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] audit-libs-3.0.1-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-11.fc34.noarch.rpm: Already downloaded [SKIPPED] binutils-2.35.1-36.fc34.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.35.1-36.fc34.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2020.2.41-7.fc34.noarch.rpm: Already downloaded [SKIPPED] coreutils-8.32-19.fc34.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-8.32-19.fc34.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.6-25.fc34.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20210213-1.git5c710c0.fc34.noarch.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.27-8.fc34.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.13-8.fc34.x86_64.rpm: Already downloaded [SKIPPED] ed-1.14.2-10.fc34.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-4-6.fc34.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.183-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.183-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.183-1.fc34.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.183-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.183-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-34-0.13.noarch.rpm: Already downloaded [SKIPPED] fedora-release-34-0.13.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-34-0.13.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-34-0.13.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-34-0.13.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.14-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.8.0-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-5.fc34.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-3.fc34.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.0-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-10.1-6.fc34.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-4.fc34.noarch.rpm: Already downloaded [SKIPPED] glibc-2.33-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.33-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.33-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-13.fc34.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.0.9-3.fc34.noarch.rpm: Already downloaded [SKIPPED] info-6.7-10.fc34.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-4.fc34.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.19.1-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.36.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.2-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.45.6-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.3.8-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.36.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.1-28.fc34.x86_64.rpm: Already downloaded [SKIPPED] libgcc-11.0.0-0.19.fc34.x86_64.rpm: Already downloaded [SKIPPED] libgcrypt-1.9.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libgomp-11.0.0-0.19.fc34.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.0-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] libmetalink-0.1.3-14.fc34.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.36.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.43.0-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.4-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.2-0.rc2.1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.2-0.rc2.1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.2-0.rc2.1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.36.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.9.5-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.9.5-2.fc34.noarch.rpm: Already downloaded [SKIPPED] libstdc++-11.0.0-0.19.fc34.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.16.0-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] libunistring-0.9.10-10.fc34.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.36.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.18-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.9.10-10.fc34.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.4.7-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-4.fc34.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.0-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.2-4.20200222.fc34.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.2-4.20200222.fc34.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-4.fc34.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-6-4.fc34.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-9.fc34.noarch.rpm: Already downloaded [SKIPPED] openldap-2.4.57-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-1.1.1i-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.23.22-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.23.22-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.36-4.fc34.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.36-4.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-39.fc34.noarch.rpm: Already downloaded [SKIPPED] popt-1.18-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20190417-5.fc34.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.9-34.fc34.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.2-2.fc34.noarch.rpm: Already downloaded [SKIPPED] readline-8.1-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-180-1.fc34.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-17-2.fc34.noarch.rpm: Already downloaded [SKIPPED] setup-2.13.7-3.fc34.noarch.rpm: Already downloaded [SKIPPED] systemd-libs-247.3-3.fc34.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2021a-1.fc34.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-50.fc34.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.36.2-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-21.fc34.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.0-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.5-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.5-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-28.fc34.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.4.7-2.fc34.x86_64.rpm: Already downloaded (143/143): bash-5.1.4-1.fc34.x86_64.rpm 38 MB/s | 1.7 MB 00:00 -------------------------------------------------------------------------------- Total 6.0 MB/s | 1.7 MB 00:00 warning: /var/lib/mock/fedora-34-x86_64-1614002910.079767/root/var/cache/dnf/fedora-e21c25ac3662d294/packages/alternatives-1.15-2.fc34.x86_64.rpm: Header V4 RSA/SHA256 Signature, key ID 45719a39: NOKEY fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x45719A39: Userid : "Fedora (34) " Fingerprint: 8C5B A699 0BDB 26E1 9F2A 1A80 1161 AE69 4571 9A39 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-34-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-5.fc34.x86_64 1/1 Preparing : 1/1 Installing : libgcc-11.0.0-0.19.fc34.x86_64 1/143 Running scriptlet: libgcc-11.0.0-0.19.fc34.x86_64 1/143 Installing : crypto-policies-20210213-1.git5c710c0.fc34.noarc 2/143 Running scriptlet: crypto-policies-20210213-1.git5c710c0.fc34.noarc 2/143 Installing : fedora-release-identity-basic-34-0.13.noarch 3/143 Installing : tzdata-2021a-1.fc34.noarch 4/143 Installing : rust-srpm-macros-17-2.fc34.noarch 5/143 Installing : qt5-srpm-macros-5.15.2-2.fc34.noarch 6/143 Installing : publicsuffix-list-dafsa-20190417-5.fc34.noarch 7/143 Installing : perl-srpm-macros-1-39.fc34.noarch 8/143 Installing : pcre2-syntax-10.36-4.fc34.noarch 9/143 Installing : openblas-srpm-macros-2-9.fc34.noarch 10/143 Installing : ocaml-srpm-macros-6-4.fc34.noarch 11/143 Installing : nim-srpm-macros-3-4.fc34.noarch 12/143 Installing : ncurses-base-6.2-4.20200222.fc34.noarch 13/143 Installing : libssh-config-0.9.5-2.fc34.noarch 14/143 Installing : kernel-srpm-macros-1.0-4.fc34.noarch 15/143 Installing : gnat-srpm-macros-4-13.fc34.noarch 16/143 Installing : ghc-srpm-macros-1.5.0-4.fc34.noarch 17/143 Installing : fpc-srpm-macros-1.3-3.fc34.noarch 18/143 Installing : fedora-gpg-keys-34-0.13.noarch 19/143 Installing : fedora-release-34-0.13.noarch 20/143 Installing : fedora-repos-34-0.13.noarch 21/143 Installing : fedora-release-common-34-0.13.noarch 22/143 Installing : setup-2.13.7-3.fc34.noarch 23/143 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-3.fc34.noarch 23/143 Installing : filesystem-3.14-5.fc34.x86_64 24/143 Installing : basesystem-11-11.fc34.noarch 25/143 Installing : ncurses-libs-6.2-4.20200222.fc34.x86_64 26/143 Running scriptlet: glibc-2.33-2.fc34.x86_64 27/143 Installing : glibc-2.33-2.fc34.x86_64 27/143 Running scriptlet: glibc-2.33-2.fc34.x86_64 27/143 Installing : bash-5.1.4-1.fc34.x86_64 28/143 Running scriptlet: bash-5.1.4-1.fc34.x86_64 28/143 Installing : glibc-common-2.33-2.fc34.x86_64 29/143 Installing : glibc-minimal-langpack-2.33-2.fc34.x86_64 30/143 Installing : zlib-1.2.11-24.fc34.x86_64 31/143 Installing : bzip2-libs-1.0.8-6.fc34.x86_64 32/143 Installing : xz-libs-5.2.5-5.fc34.x86_64 33/143 Installing : elfutils-libelf-0.183-1.fc34.x86_64 34/143 Installing : libstdc++-11.0.0-0.19.fc34.x86_64 35/143 Installing : libxcrypt-4.4.18-1.fc34.x86_64 36/143 Installing : libzstd-1.4.7-2.fc34.x86_64 37/143 Installing : libattr-2.4.48-11.fc34.x86_64 38/143 Installing : libacl-2.2.53-10.fc34.x86_64 39/143 Installing : libcap-2.48-2.fc34.x86_64 40/143 Installing : libcom_err-1.45.6-5.fc34.x86_64 41/143 Installing : libuuid-2.36.2-1.fc34.x86_64 42/143 Installing : popt-1.18-3.fc34.x86_64 43/143 Installing : gmp-1:6.2.0-6.fc34.x86_64 44/143 Installing : readline-8.1-2.fc34.x86_64 45/143 Installing : mpfr-4.1.0-4.fc34.x86_64 46/143 Installing : unzip-6.0-50.fc34.x86_64 47/143 Installing : file-libs-5.39-5.fc34.x86_64 48/143 Installing : file-5.39-5.fc34.x86_64 49/143 Installing : sqlite-libs-3.34.1-2.fc34.x86_64 50/143 Installing : libdb-5.3.28-46.fc34.x86_64 51/143 Installing : lua-libs-5.4.2-2.fc34.x86_64 52/143 Installing : alternatives-1.15-2.fc34.x86_64 53/143 Installing : libcap-ng-0.8.2-4.fc34.x86_64 54/143 Installing : audit-libs-3.0.1-2.fc34.x86_64 55/143 Installing : libsepol-3.2-0.rc2.1.fc34.x86_64 56/143 Installing : libunistring-0.9.10-10.fc34.x86_64 57/143 Installing : libidn2-2.3.0-5.fc34.x86_64 58/143 Installing : lz4-libs-1.9.3-2.fc34.x86_64 59/143 Installing : pcre2-10.36-4.fc34.x86_64 60/143 Installing : libselinux-3.2-0.rc2.1.fc34.x86_64 61/143 Installing : sed-4.8-7.fc34.x86_64 62/143 Installing : findutils-1:4.8.0-2.fc34.x86_64 63/143 Installing : libsemanage-3.2-0.rc2.1.fc34.x86_64 64/143 Installing : shadow-utils-2:4.8.1-7.fc34.x86_64 65/143 Running scriptlet: libutempter-1.2.1-4.fc34.x86_64 66/143 Installing : libutempter-1.2.1-4.fc34.x86_64 66/143 Installing : tar-2:1.34-1.fc34.x86_64 67/143 Installing : libpsl-0.21.1-3.fc34.x86_64 68/143 Installing : zip-3.0-28.fc34.x86_64 69/143 Installing : zstd-1.4.7-2.fc34.x86_64 70/143 Installing : dwz-0.13-8.fc34.x86_64 71/143 Installing : libxml2-2.9.10-10.fc34.x86_64 72/143 Installing : bzip2-1.0.8-6.fc34.x86_64 73/143 Installing : info-6.7-10.fc34.x86_64 74/143 Installing : ed-1.14.2-10.fc34.x86_64 75/143 Installing : patch-2.7.6-14.fc34.x86_64 76/143 Installing : elfutils-default-yama-scope-0.183-1.fc34.noarch 77/143 Running scriptlet: elfutils-default-yama-scope-0.183-1.fc34.noarch 77/143 Installing : cpio-2.13-9.fc34.x86_64 78/143 Installing : diffutils-3.7-8.fc34.x86_64 79/143 Installing : expat-2.2.10-2.fc34.x86_64 80/143 Installing : libmetalink-0.1.3-14.fc34.x86_64 81/143 Installing : libgpg-error-1.41-2.fc34.x86_64 82/143 Installing : libgcrypt-1.9.2-1.fc34.x86_64 83/143 Installing : libpkgconf-1.7.3-6.fc34.x86_64 84/143 Installing : pkgconf-1.7.3-6.fc34.x86_64 85/143 Installing : libsigsegv-2.13-2.fc34.x86_64 86/143 Installing : gawk-5.1.0-3.fc34.x86_64 87/143 Installing : libverto-0.3.1-3.fc34.x86_64 88/143 Installing : pcre-8.44-3.fc34.1.x86_64 89/143 Installing : grep-3.6-2.fc34.x86_64 90/143 Installing : xz-5.2.5-5.fc34.x86_64 91/143 Installing : keyutils-libs-1.6.1-2.fc34.x86_64 92/143 Installing : libbrotli-1.0.9-4.fc34.x86_64 93/143 Installing : libeconf-0.3.8-5.fc34.x86_64 94/143 Installing : libffi-3.1-28.fc34.x86_64 95/143 Installing : p11-kit-0.23.22-3.fc34.x86_64 96/143 Installing : libgomp-11.0.0-0.19.fc34.x86_64 97/143 Installing : libnghttp2-1.43.0-1.fc34.x86_64 98/143 Installing : libsmartcols-2.36.2-1.fc34.x86_64 99/143 Installing : libtasn1-4.16.0-4.fc34.x86_64 100/143 Installing : p11-kit-trust-0.23.22-3.fc34.x86_64 101/143 Running scriptlet: p11-kit-trust-0.23.22-3.fc34.x86_64 101/143 Installing : xxhash-libs-0.8.0-2.fc34.x86_64 102/143 Installing : coreutils-common-8.32-19.fc34.x86_64 103/143 Installing : openssl-libs-1:1.1.1i-3.fc34.x86_64 104/143 Installing : coreutils-8.32-19.fc34.x86_64 105/143 Running scriptlet: ca-certificates-2020.2.41-7.fc34.noarch 106/143 Installing : ca-certificates-2020.2.41-7.fc34.noarch 106/143 Running scriptlet: ca-certificates-2020.2.41-7.fc34.noarch 106/143 Installing : krb5-libs-1.19.1-1.fc34.x86_64 107/143 Installing : libblkid-2.36.2-1.fc34.x86_64 108/143 Running scriptlet: libblkid-2.36.2-1.fc34.x86_64 108/143 Installing : libtirpc-1.3.1-1.fc34.x86_64 109/143 Installing : gzip-1.10-4.fc34.x86_64 110/143 Installing : cracklib-2.9.6-25.fc34.x86_64 111/143 Installing : libnsl2-1.3.0-2.fc34.x86_64 112/143 Installing : libpwquality-1.4.4-2.fc34.x86_64 113/143 Installing : pam-1.5.1-3.fc34.x86_64 114/143 Installing : libfdisk-2.36.2-1.fc34.x86_64 115/143 Installing : libmount-2.36.2-1.fc34.x86_64 116/143 Installing : cyrus-sasl-lib-2.1.27-8.fc34.x86_64 117/143 Installing : openldap-2.4.57-2.fc34.x86_64 118/143 Installing : libssh-0.9.5-2.fc34.x86_64 119/143 Installing : libcurl-7.75.0-1.fc34.x86_64 120/143 Installing : elfutils-libs-0.183-1.fc34.x86_64 121/143 Installing : elfutils-debuginfod-client-0.183-1.fc34.x86_64 122/143 Installing : binutils-gold-2.35.1-36.fc34.x86_64 123/143 Installing : binutils-2.35.1-36.fc34.x86_64 124/143 Running scriptlet: binutils-2.35.1-36.fc34.x86_64 124/143 Installing : elfutils-0.183-1.fc34.x86_64 125/143 Installing : gdb-minimal-10.1-6.fc34.x86_64 126/143 Installing : curl-7.75.0-1.fc34.x86_64 127/143 Installing : systemd-libs-247.3-3.fc34.x86_64 128/143 Running scriptlet: systemd-libs-247.3-3.fc34.x86_64 128/143 Installing : libarchive-3.5.1-2.fc34.x86_64 129/143 Installing : rpm-libs-4.16.1.2-6.fc34.x86_64 130/143 Installing : rpm-4.16.1.2-6.fc34.x86_64 131/143 Installing : efi-srpm-macros-4-6.fc34.noarch 132/143 Installing : lua-srpm-macros-1-4.fc34.noarch 133/143 Installing : fonts-srpm-macros-1:2.0.5-5.fc34.noarch 134/143 Installing : go-srpm-macros-3.0.9-3.fc34.noarch 135/143 Installing : python-srpm-macros-3.9-34.fc34.noarch 136/143 Installing : redhat-rpm-config-180-1.fc34.noarch 137/143 Installing : rpm-build-libs-4.16.1.2-6.fc34.x86_64 138/143 Installing : pkgconf-m4-1.7.3-6.fc34.noarch 139/143 Installing : pkgconf-pkg-config-1.7.3-6.fc34.x86_64 140/143 Installing : rpm-build-4.16.1.2-6.fc34.x86_64 141/143 Installing : util-linux-2.36.2-1.fc34.x86_64 142/143 Running scriptlet: util-linux-2.36.2-1.fc34.x86_64 142/143 Installing : which-2.21-21.fc34.x86_64 143/143 Running scriptlet: filesystem-3.14-5.fc34.x86_64 143/143 Running scriptlet: ca-certificates-2020.2.41-7.fc34.noarch 143/143 Running scriptlet: rpm-4.16.1.2-6.fc34.x86_64 143/143 Running scriptlet: which-2.21-21.fc34.x86_64 143/143 Verifying : bash-5.1.4-1.fc34.x86_64 1/143 Verifying : cpio-2.13-9.fc34.x86_64 2/143 Verifying : curl-7.75.0-1.fc34.x86_64 3/143 Verifying : diffutils-3.7-8.fc34.x86_64 4/143 Verifying : expat-2.2.10-2.fc34.x86_64 5/143 Verifying : file-5.39-5.fc34.x86_64 6/143 Verifying : file-libs-5.39-5.fc34.x86_64 7/143 Verifying : gmp-1:6.2.0-6.fc34.x86_64 8/143 Verifying : grep-3.6-2.fc34.x86_64 9/143 Verifying : gzip-1.10-4.fc34.x86_64 10/143 Verifying : libacl-2.2.53-10.fc34.x86_64 11/143 Verifying : libarchive-3.5.1-2.fc34.x86_64 12/143 Verifying : libattr-2.4.48-11.fc34.x86_64 13/143 Verifying : libcurl-7.75.0-1.fc34.x86_64 14/143 Verifying : libdb-5.3.28-46.fc34.x86_64 15/143 Verifying : libgpg-error-1.41-2.fc34.x86_64 16/143 Verifying : libnsl2-1.3.0-2.fc34.x86_64 17/143 Verifying : libpkgconf-1.7.3-6.fc34.x86_64 18/143 Verifying : libsigsegv-2.13-2.fc34.x86_64 19/143 Verifying : libtirpc-1.3.1-1.fc34.x86_64 20/143 Verifying : libverto-0.3.1-3.fc34.x86_64 21/143 Verifying : lua-libs-5.4.2-2.fc34.x86_64 22/143 Verifying : pam-1.5.1-3.fc34.x86_64 23/143 Verifying : patch-2.7.6-14.fc34.x86_64 24/143 Verifying : pcre-8.44-3.fc34.1.x86_64 25/143 Verifying : pkgconf-1.7.3-6.fc34.x86_64 26/143 Verifying : pkgconf-m4-1.7.3-6.fc34.noarch 27/143 Verifying : pkgconf-pkg-config-1.7.3-6.fc34.x86_64 28/143 Verifying : rpm-4.16.1.2-6.fc34.x86_64 29/143 Verifying : rpm-build-4.16.1.2-6.fc34.x86_64 30/143 Verifying : rpm-build-libs-4.16.1.2-6.fc34.x86_64 31/143 Verifying : rpm-libs-4.16.1.2-6.fc34.x86_64 32/143 Verifying : sed-4.8-7.fc34.x86_64 33/143 Verifying : shadow-utils-2:4.8.1-7.fc34.x86_64 34/143 Verifying : sqlite-libs-3.34.1-2.fc34.x86_64 35/143 Verifying : zlib-1.2.11-24.fc34.x86_64 36/143 Verifying : alternatives-1.15-2.fc34.x86_64 37/143 Verifying : audit-libs-3.0.1-2.fc34.x86_64 38/143 Verifying : basesystem-11-11.fc34.noarch 39/143 Verifying : binutils-2.35.1-36.fc34.x86_64 40/143 Verifying : binutils-gold-2.35.1-36.fc34.x86_64 41/143 Verifying : bzip2-1.0.8-6.fc34.x86_64 42/143 Verifying : bzip2-libs-1.0.8-6.fc34.x86_64 43/143 Verifying : ca-certificates-2020.2.41-7.fc34.noarch 44/143 Verifying : coreutils-8.32-19.fc34.x86_64 45/143 Verifying : coreutils-common-8.32-19.fc34.x86_64 46/143 Verifying : cracklib-2.9.6-25.fc34.x86_64 47/143 Verifying : crypto-policies-20210213-1.git5c710c0.fc34.noarc 48/143 Verifying : cyrus-sasl-lib-2.1.27-8.fc34.x86_64 49/143 Verifying : dwz-0.13-8.fc34.x86_64 50/143 Verifying : ed-1.14.2-10.fc34.x86_64 51/143 Verifying : efi-srpm-macros-4-6.fc34.noarch 52/143 Verifying : elfutils-0.183-1.fc34.x86_64 53/143 Verifying : elfutils-debuginfod-client-0.183-1.fc34.x86_64 54/143 Verifying : elfutils-default-yama-scope-0.183-1.fc34.noarch 55/143 Verifying : elfutils-libelf-0.183-1.fc34.x86_64 56/143 Verifying : elfutils-libs-0.183-1.fc34.x86_64 57/143 Verifying : fedora-gpg-keys-34-0.13.noarch 58/143 Verifying : fedora-release-34-0.13.noarch 59/143 Verifying : fedora-release-common-34-0.13.noarch 60/143 Verifying : fedora-release-identity-basic-34-0.13.noarch 61/143 Verifying : fedora-repos-34-0.13.noarch 62/143 Verifying : filesystem-3.14-5.fc34.x86_64 63/143 Verifying : findutils-1:4.8.0-2.fc34.x86_64 64/143 Verifying : fonts-srpm-macros-1:2.0.5-5.fc34.noarch 65/143 Verifying : fpc-srpm-macros-1.3-3.fc34.noarch 66/143 Verifying : gawk-5.1.0-3.fc34.x86_64 67/143 Verifying : gdb-minimal-10.1-6.fc34.x86_64 68/143 Verifying : ghc-srpm-macros-1.5.0-4.fc34.noarch 69/143 Verifying : glibc-2.33-2.fc34.x86_64 70/143 Verifying : glibc-common-2.33-2.fc34.x86_64 71/143 Verifying : glibc-minimal-langpack-2.33-2.fc34.x86_64 72/143 Verifying : gnat-srpm-macros-4-13.fc34.noarch 73/143 Verifying : go-srpm-macros-3.0.9-3.fc34.noarch 74/143 Verifying : info-6.7-10.fc34.x86_64 75/143 Verifying : kernel-srpm-macros-1.0-4.fc34.noarch 76/143 Verifying : keyutils-libs-1.6.1-2.fc34.x86_64 77/143 Verifying : krb5-libs-1.19.1-1.fc34.x86_64 78/143 Verifying : libblkid-2.36.2-1.fc34.x86_64 79/143 Verifying : libbrotli-1.0.9-4.fc34.x86_64 80/143 Verifying : libcap-2.48-2.fc34.x86_64 81/143 Verifying : libcap-ng-0.8.2-4.fc34.x86_64 82/143 Verifying : libcom_err-1.45.6-5.fc34.x86_64 83/143 Verifying : libeconf-0.3.8-5.fc34.x86_64 84/143 Verifying : libfdisk-2.36.2-1.fc34.x86_64 85/143 Verifying : libffi-3.1-28.fc34.x86_64 86/143 Verifying : libgcc-11.0.0-0.19.fc34.x86_64 87/143 Verifying : libgcrypt-1.9.2-1.fc34.x86_64 88/143 Verifying : libgomp-11.0.0-0.19.fc34.x86_64 89/143 Verifying : libidn2-2.3.0-5.fc34.x86_64 90/143 Verifying : libmetalink-0.1.3-14.fc34.x86_64 91/143 Verifying : libmount-2.36.2-1.fc34.x86_64 92/143 Verifying : libnghttp2-1.43.0-1.fc34.x86_64 93/143 Verifying : libpsl-0.21.1-3.fc34.x86_64 94/143 Verifying : libpwquality-1.4.4-2.fc34.x86_64 95/143 Verifying : libselinux-3.2-0.rc2.1.fc34.x86_64 96/143 Verifying : libsemanage-3.2-0.rc2.1.fc34.x86_64 97/143 Verifying : libsepol-3.2-0.rc2.1.fc34.x86_64 98/143 Verifying : libsmartcols-2.36.2-1.fc34.x86_64 99/143 Verifying : libssh-0.9.5-2.fc34.x86_64 100/143 Verifying : libssh-config-0.9.5-2.fc34.noarch 101/143 Verifying : libstdc++-11.0.0-0.19.fc34.x86_64 102/143 Verifying : libtasn1-4.16.0-4.fc34.x86_64 103/143 Verifying : libunistring-0.9.10-10.fc34.x86_64 104/143 Verifying : libutempter-1.2.1-4.fc34.x86_64 105/143 Verifying : libuuid-2.36.2-1.fc34.x86_64 106/143 Verifying : libxcrypt-4.4.18-1.fc34.x86_64 107/143 Verifying : libxml2-2.9.10-10.fc34.x86_64 108/143 Verifying : libzstd-1.4.7-2.fc34.x86_64 109/143 Verifying : lua-srpm-macros-1-4.fc34.noarch 110/143 Verifying : lz4-libs-1.9.3-2.fc34.x86_64 111/143 Verifying : mpfr-4.1.0-4.fc34.x86_64 112/143 Verifying : ncurses-base-6.2-4.20200222.fc34.noarch 113/143 Verifying : ncurses-libs-6.2-4.20200222.fc34.x86_64 114/143 Verifying : nim-srpm-macros-3-4.fc34.noarch 115/143 Verifying : ocaml-srpm-macros-6-4.fc34.noarch 116/143 Verifying : openblas-srpm-macros-2-9.fc34.noarch 117/143 Verifying : openldap-2.4.57-2.fc34.x86_64 118/143 Verifying : openssl-libs-1:1.1.1i-3.fc34.x86_64 119/143 Verifying : p11-kit-0.23.22-3.fc34.x86_64 120/143 Verifying : p11-kit-trust-0.23.22-3.fc34.x86_64 121/143 Verifying : pcre2-10.36-4.fc34.x86_64 122/143 Verifying : pcre2-syntax-10.36-4.fc34.noarch 123/143 Verifying : perl-srpm-macros-1-39.fc34.noarch 124/143 Verifying : popt-1.18-3.fc34.x86_64 125/143 Verifying : publicsuffix-list-dafsa-20190417-5.fc34.noarch 126/143 Verifying : python-srpm-macros-3.9-34.fc34.noarch 127/143 Verifying : qt5-srpm-macros-5.15.2-2.fc34.noarch 128/143 Verifying : readline-8.1-2.fc34.x86_64 129/143 Verifying : redhat-rpm-config-180-1.fc34.noarch 130/143 Verifying : rust-srpm-macros-17-2.fc34.noarch 131/143 Verifying : setup-2.13.7-3.fc34.noarch 132/143 Verifying : systemd-libs-247.3-3.fc34.x86_64 133/143 Verifying : tar-2:1.34-1.fc34.x86_64 134/143 Verifying : tzdata-2021a-1.fc34.noarch 135/143 Verifying : unzip-6.0-50.fc34.x86_64 136/143 Verifying : util-linux-2.36.2-1.fc34.x86_64 137/143 Verifying : which-2.21-21.fc34.x86_64 138/143 Verifying : xxhash-libs-0.8.0-2.fc34.x86_64 139/143 Verifying : xz-5.2.5-5.fc34.x86_64 140/143 Verifying : xz-libs-5.2.5-5.fc34.x86_64 141/143 Verifying : zip-3.0-28.fc34.x86_64 142/143 Verifying : zstd-1.4.7-2.fc34.x86_64 143/143 Installed: alternatives-1.15-2.fc34.x86_64 audit-libs-3.0.1-2.fc34.x86_64 basesystem-11-11.fc34.noarch bash-5.1.4-1.fc34.x86_64 binutils-2.35.1-36.fc34.x86_64 binutils-gold-2.35.1-36.fc34.x86_64 bzip2-1.0.8-6.fc34.x86_64 bzip2-libs-1.0.8-6.fc34.x86_64 ca-certificates-2020.2.41-7.fc34.noarch coreutils-8.32-19.fc34.x86_64 coreutils-common-8.32-19.fc34.x86_64 cpio-2.13-9.fc34.x86_64 cracklib-2.9.6-25.fc34.x86_64 crypto-policies-20210213-1.git5c710c0.fc34.noarch curl-7.75.0-1.fc34.x86_64 cyrus-sasl-lib-2.1.27-8.fc34.x86_64 diffutils-3.7-8.fc34.x86_64 dwz-0.13-8.fc34.x86_64 ed-1.14.2-10.fc34.x86_64 efi-srpm-macros-4-6.fc34.noarch elfutils-0.183-1.fc34.x86_64 elfutils-debuginfod-client-0.183-1.fc34.x86_64 elfutils-default-yama-scope-0.183-1.fc34.noarch elfutils-libelf-0.183-1.fc34.x86_64 elfutils-libs-0.183-1.fc34.x86_64 expat-2.2.10-2.fc34.x86_64 fedora-gpg-keys-34-0.13.noarch fedora-release-34-0.13.noarch fedora-release-common-34-0.13.noarch fedora-release-identity-basic-34-0.13.noarch fedora-repos-34-0.13.noarch file-5.39-5.fc34.x86_64 file-libs-5.39-5.fc34.x86_64 filesystem-3.14-5.fc34.x86_64 findutils-1:4.8.0-2.fc34.x86_64 fonts-srpm-macros-1:2.0.5-5.fc34.noarch fpc-srpm-macros-1.3-3.fc34.noarch gawk-5.1.0-3.fc34.x86_64 gdb-minimal-10.1-6.fc34.x86_64 ghc-srpm-macros-1.5.0-4.fc34.noarch glibc-2.33-2.fc34.x86_64 glibc-common-2.33-2.fc34.x86_64 glibc-minimal-langpack-2.33-2.fc34.x86_64 gmp-1:6.2.0-6.fc34.x86_64 gnat-srpm-macros-4-13.fc34.noarch go-srpm-macros-3.0.9-3.fc34.noarch grep-3.6-2.fc34.x86_64 gzip-1.10-4.fc34.x86_64 info-6.7-10.fc34.x86_64 kernel-srpm-macros-1.0-4.fc34.noarch keyutils-libs-1.6.1-2.fc34.x86_64 krb5-libs-1.19.1-1.fc34.x86_64 libacl-2.2.53-10.fc34.x86_64 libarchive-3.5.1-2.fc34.x86_64 libattr-2.4.48-11.fc34.x86_64 libblkid-2.36.2-1.fc34.x86_64 libbrotli-1.0.9-4.fc34.x86_64 libcap-2.48-2.fc34.x86_64 libcap-ng-0.8.2-4.fc34.x86_64 libcom_err-1.45.6-5.fc34.x86_64 libcurl-7.75.0-1.fc34.x86_64 libdb-5.3.28-46.fc34.x86_64 libeconf-0.3.8-5.fc34.x86_64 libfdisk-2.36.2-1.fc34.x86_64 libffi-3.1-28.fc34.x86_64 libgcc-11.0.0-0.19.fc34.x86_64 libgcrypt-1.9.2-1.fc34.x86_64 libgomp-11.0.0-0.19.fc34.x86_64 libgpg-error-1.41-2.fc34.x86_64 libidn2-2.3.0-5.fc34.x86_64 libmetalink-0.1.3-14.fc34.x86_64 libmount-2.36.2-1.fc34.x86_64 libnghttp2-1.43.0-1.fc34.x86_64 libnsl2-1.3.0-2.fc34.x86_64 libpkgconf-1.7.3-6.fc34.x86_64 libpsl-0.21.1-3.fc34.x86_64 libpwquality-1.4.4-2.fc34.x86_64 libselinux-3.2-0.rc2.1.fc34.x86_64 libsemanage-3.2-0.rc2.1.fc34.x86_64 libsepol-3.2-0.rc2.1.fc34.x86_64 libsigsegv-2.13-2.fc34.x86_64 libsmartcols-2.36.2-1.fc34.x86_64 libssh-0.9.5-2.fc34.x86_64 libssh-config-0.9.5-2.fc34.noarch libstdc++-11.0.0-0.19.fc34.x86_64 libtasn1-4.16.0-4.fc34.x86_64 libtirpc-1.3.1-1.fc34.x86_64 libunistring-0.9.10-10.fc34.x86_64 libutempter-1.2.1-4.fc34.x86_64 libuuid-2.36.2-1.fc34.x86_64 libverto-0.3.1-3.fc34.x86_64 libxcrypt-4.4.18-1.fc34.x86_64 libxml2-2.9.10-10.fc34.x86_64 libzstd-1.4.7-2.fc34.x86_64 lua-libs-5.4.2-2.fc34.x86_64 lua-srpm-macros-1-4.fc34.noarch lz4-libs-1.9.3-2.fc34.x86_64 mpfr-4.1.0-4.fc34.x86_64 ncurses-base-6.2-4.20200222.fc34.noarch ncurses-libs-6.2-4.20200222.fc34.x86_64 nim-srpm-macros-3-4.fc34.noarch ocaml-srpm-macros-6-4.fc34.noarch openblas-srpm-macros-2-9.fc34.noarch openldap-2.4.57-2.fc34.x86_64 openssl-libs-1:1.1.1i-3.fc34.x86_64 p11-kit-0.23.22-3.fc34.x86_64 p11-kit-trust-0.23.22-3.fc34.x86_64 pam-1.5.1-3.fc34.x86_64 patch-2.7.6-14.fc34.x86_64 pcre-8.44-3.fc34.1.x86_64 pcre2-10.36-4.fc34.x86_64 pcre2-syntax-10.36-4.fc34.noarch perl-srpm-macros-1-39.fc34.noarch pkgconf-1.7.3-6.fc34.x86_64 pkgconf-m4-1.7.3-6.fc34.noarch pkgconf-pkg-config-1.7.3-6.fc34.x86_64 popt-1.18-3.fc34.x86_64 publicsuffix-list-dafsa-20190417-5.fc34.noarch python-srpm-macros-3.9-34.fc34.noarch qt5-srpm-macros-5.15.2-2.fc34.noarch readline-8.1-2.fc34.x86_64 redhat-rpm-config-180-1.fc34.noarch rpm-4.16.1.2-6.fc34.x86_64 rpm-build-4.16.1.2-6.fc34.x86_64 rpm-build-libs-4.16.1.2-6.fc34.x86_64 rpm-libs-4.16.1.2-6.fc34.x86_64 rust-srpm-macros-17-2.fc34.noarch sed-4.8-7.fc34.x86_64 setup-2.13.7-3.fc34.noarch shadow-utils-2:4.8.1-7.fc34.x86_64 sqlite-libs-3.34.1-2.fc34.x86_64 systemd-libs-247.3-3.fc34.x86_64 tar-2:1.34-1.fc34.x86_64 tzdata-2021a-1.fc34.noarch unzip-6.0-50.fc34.x86_64 util-linux-2.36.2-1.fc34.x86_64 which-2.21-21.fc34.x86_64 xxhash-libs-0.8.0-2.fc34.x86_64 xz-5.2.5-5.fc34.x86_64 xz-libs-5.2.5-5.fc34.x86_64 zip-3.0-28.fc34.x86_64 zlib-1.2.11-24.fc34.x86_64 zstd-1.4.7-2.fc34.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: kernel-srpm-macros-1.0-4.fc34.noarch pcre2-syntax-10.36-4.fc34.noarch zstd-1.4.7-2.fc34.x86_64 libacl-2.2.53-10.fc34.x86_64 gdb-minimal-10.1-6.fc34.x86_64 file-5.39-5.fc34.x86_64 libidn2-2.3.0-5.fc34.x86_64 lua-srpm-macros-1-4.fc34.noarch fedora-gpg-keys-34-0.13.noarch ncurses-base-6.2-4.20200222.fc34.noarch pam-1.5.1-3.fc34.x86_64 efi-srpm-macros-4-6.fc34.noarch grep-3.6-2.fc34.x86_64 libeconf-0.3.8-5.fc34.x86_64 gpg-pubkey-45719a39-5f2c0192 rpm-4.16.1.2-6.fc34.x86_64 expat-2.2.10-2.fc34.x86_64 which-2.21-21.fc34.x86_64 elfutils-libelf-0.183-1.fc34.x86_64 fedora-release-common-34-0.13.noarch pkgconf-1.7.3-6.fc34.x86_64 rust-srpm-macros-17-2.fc34.noarch sqlite-libs-3.34.1-2.fc34.x86_64 openblas-srpm-macros-2-9.fc34.noarch libmount-2.36.2-1.fc34.x86_64 libuuid-2.36.2-1.fc34.x86_64 libstdc++-11.0.0-0.19.fc34.x86_64 ed-1.14.2-10.fc34.x86_64 p11-kit-trust-0.23.22-3.fc34.x86_64 alternatives-1.15-2.fc34.x86_64 dwz-0.13-8.fc34.x86_64 libtirpc-1.3.1-1.fc34.x86_64 p11-kit-0.23.22-3.fc34.x86_64 libtasn1-4.16.0-4.fc34.x86_64 bzip2-1.0.8-6.fc34.x86_64 audit-libs-3.0.1-2.fc34.x86_64 libgomp-11.0.0-0.19.fc34.x86_64 mpfr-4.1.0-4.fc34.x86_64 pkgconf-m4-1.7.3-6.fc34.noarch xz-libs-5.2.5-5.fc34.x86_64 libsigsegv-2.13-2.fc34.x86_64 fpc-srpm-macros-1.3-3.fc34.noarch file-libs-5.39-5.fc34.x86_64 fedora-release-34-0.13.noarch redhat-rpm-config-180-1.fc34.noarch keyutils-libs-1.6.1-2.fc34.x86_64 cracklib-2.9.6-25.fc34.x86_64 libnsl2-1.3.0-2.fc34.x86_64 ncurses-libs-6.2-4.20200222.fc34.x86_64 tar-1.34-1.fc34.x86_64 libcap-2.48-2.fc34.x86_64 libcurl-7.75.0-1.fc34.x86_64 shadow-utils-4.8.1-7.fc34.x86_64 util-linux-2.36.2-1.fc34.x86_64 rpm-build-4.16.1.2-6.fc34.x86_64 qt5-srpm-macros-5.15.2-2.fc34.noarch filesystem-3.14-5.fc34.x86_64 basesystem-11-11.fc34.noarch openldap-2.4.57-2.fc34.x86_64 nim-srpm-macros-3-4.fc34.noarch libblkid-2.36.2-1.fc34.x86_64 libsmartcols-2.36.2-1.fc34.x86_64 bash-5.1.4-1.fc34.x86_64 gmp-6.2.0-6.fc34.x86_64 libsepol-3.2-0.rc2.1.fc34.x86_64 libverto-0.3.1-3.fc34.x86_64 lua-libs-5.4.2-2.fc34.x86_64 fedora-repos-34-0.13.noarch libxml2-2.9.10-10.fc34.x86_64 libselinux-3.2-0.rc2.1.fc34.x86_64 zip-3.0-28.fc34.x86_64 glibc-common-2.33-2.fc34.x86_64 zlib-1.2.11-24.fc34.x86_64 findutils-4.8.0-2.fc34.x86_64 libcom_err-1.45.6-5.fc34.x86_64 elfutils-libs-0.183-1.fc34.x86_64 gawk-5.1.0-3.fc34.x86_64 libdb-5.3.28-46.fc34.x86_64 sed-4.8-7.fc34.x86_64 fedora-release-identity-basic-34-0.13.noarch systemd-libs-247.3-3.fc34.x86_64 libssh-0.9.5-2.fc34.x86_64 ocaml-srpm-macros-6-4.fc34.noarch libbrotli-1.0.9-4.fc34.x86_64 libutempter-1.2.1-4.fc34.x86_64 libpsl-0.21.1-3.fc34.x86_64 perl-srpm-macros-1-39.fc34.noarch pkgconf-pkg-config-1.7.3-6.fc34.x86_64 libssh-config-0.9.5-2.fc34.noarch libattr-2.4.48-11.fc34.x86_64 openssl-libs-1.1.1i-3.fc34.x86_64 tzdata-2021a-1.fc34.noarch libffi-3.1-28.fc34.x86_64 crypto-policies-20210213-1.git5c710c0.fc34.noarch bzip2-libs-1.0.8-6.fc34.x86_64 libnghttp2-1.43.0-1.fc34.x86_64 libcap-ng-0.8.2-4.fc34.x86_64 coreutils-8.32-19.fc34.x86_64 xz-5.2.5-5.fc34.x86_64 libgcc-11.0.0-0.19.fc34.x86_64 cpio-2.13-9.fc34.x86_64 libpkgconf-1.7.3-6.fc34.x86_64 xxhash-libs-0.8.0-2.fc34.x86_64 glibc-2.33-2.fc34.x86_64 readline-8.1-2.fc34.x86_64 elfutils-debuginfod-client-0.183-1.fc34.x86_64 cyrus-sasl-lib-2.1.27-8.fc34.x86_64 libpwquality-1.4.4-2.fc34.x86_64 fonts-srpm-macros-2.0.5-5.fc34.noarch glibc-minimal-langpack-2.33-2.fc34.x86_64 info-6.7-10.fc34.x86_64 pcre2-10.36-4.fc34.x86_64 libxcrypt-4.4.18-1.fc34.x86_64 elfutils-0.183-1.fc34.x86_64 rpm-libs-4.16.1.2-6.fc34.x86_64 go-srpm-macros-3.0.9-3.fc34.noarch lz4-libs-1.9.3-2.fc34.x86_64 libzstd-1.4.7-2.fc34.x86_64 gnat-srpm-macros-4-13.fc34.noarch libmetalink-0.1.3-14.fc34.x86_64 libgpg-error-1.41-2.fc34.x86_64 binutils-2.35.1-36.fc34.x86_64 unzip-6.0-50.fc34.x86_64 binutils-gold-2.35.1-36.fc34.x86_64 publicsuffix-list-dafsa-20190417-5.fc34.noarch gzip-1.10-4.fc34.x86_64 krb5-libs-1.19.1-1.fc34.x86_64 rpm-build-libs-4.16.1.2-6.fc34.x86_64 libfdisk-2.36.2-1.fc34.x86_64 libgcrypt-1.9.2-1.fc34.x86_64 ca-certificates-2020.2.41-7.fc34.noarch ghc-srpm-macros-1.5.0-4.fc34.noarch coreutils-common-8.32-19.fc34.x86_64 python-srpm-macros-3.9-34.fc34.noarch libarchive-3.5.1-2.fc34.x86_64 patch-2.7.6-14.fc34.x86_64 popt-1.18-3.fc34.x86_64 curl-7.75.0-1.fc34.x86_64 libsemanage-3.2-0.rc2.1.fc34.x86_64 pcre-8.44-3.fc34.1.x86_64 elfutils-default-yama-scope-0.183-1.fc34.noarch diffutils-3.7-8.fc34.x86_64 setup-2.13.7-3.fc34.noarch libunistring-0.9.10-10.fc34.x86_64 Start: buildsrpm Start: rpmbuild -bs sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1611619200 Wrote: /builddir/build/SRPMS/bionetgen-2.5.2-2.fc34.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-34-x86_64-1614002910.079767/root/var/log/dnf.rpm.log /var/lib/mock/fedora-34-x86_64-1614002910.079767/root/var/log/dnf.librepo.log /var/lib/mock/fedora-34-x86_64-1614002910.079767/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/copr-rpmbuild-2s0q6idy/obtain-sources/bionetgen/bionetgen.spec) Config(child) 1 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run INFO: unmounting tmpfs. Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.5.2-2.fc34.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1614002983.276891 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.9 starting (python version = 3.9.1, NVR = mock-2.9-1.fc33)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.5.2-2.fc34.src.rpm) Config(fedora-34-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-34-x86_64-bootstrap-1614002983.276891/root. INFO: calling preinit hooks INFO: enabled root cache Start(bootstrap): unpacking root cache Finish(bootstrap): unpacking root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.9 INFO: Mock Version: 2.9 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-34-x86_64-1614002983.276891/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.9 INFO: Mock Version: 2.9 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk Copr repository 60 kB/s | 3.0 kB 00:00 Copr repository 75 MB/s | 8.7 MB 00:00 fedora 44 kB/s | 12 kB 00:00 fedora 1.4 MB/s | 1.7 MB 00:01 updates 49 kB/s | 13 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bionetgen-2.5.2-2.fc34.src.rpm Start: build setup for bionetgen-2.5.2-2.fc34.src.rpm sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1611619200 Wrote: /builddir/build/SRPMS/bionetgen-2.5.2-2.fc34.src.rpm No matches found for the following disable plugin patterns: local, spacewalk Copr repository 176 kB/s | 3.0 kB 00:00 fedora 45 kB/s | 12 kB 00:00 fedora 1.1 MB/s | 1.7 MB 00:01 updates 48 kB/s | 13 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: autoconf  noarch 2.71-1.fc34 copr_base 720 k automake  noarch 1.16.2-4.fc34 fedora 664 k gcc  x86_64 11.0.0-0.19.fc34 fedora 31 M gcc-c++  x86_64 11.0.0-0.19.fc34 fedora 12 M gcc-gfortran  x86_64 11.0.0-0.19.fc34 fedora 11 M libtool  x86_64 2.4.6-40.fc34 copr_base 579 k make  x86_64 1:4.3-5.fc34 fedora 539 k muParser-devel  x86_64 2.3.2-2.fc34 fedora 26 k perl-Carp  noarch 1.50-458.fc34 fedora 29 k perl-Class-Struct  noarch 0.66-471.fc34 fedora 34 k perl-Data-Dumper  x86_64 2.174-460.fc34 fedora 56 k perl-Exporter  noarch 5.74-459.fc34 fedora 32 k perl-File-Basename  noarch 2.85-471.fc34 fedora 29 k perl-FindBin  noarch 1.51-471.fc34 fedora 25 k perl-Getopt-Long  noarch 1:2.52-2.fc34 fedora 61 k perl-IO  x86_64 1.43-471.fc34 fedora 99 k perl-IPC-Open3  noarch 1.21-471.fc34 fedora 34 k perl-Math-Complex  noarch 1.59-471.fc34 fedora 59 k perl-POSIX  x86_64 1.94-471.fc34 fedora 110 k perl-PathTools  x86_64 3.78-459.fc34 fedora 86 k perl-Scalar-List-Utils  x86_64 4:1.55-458.fc34 fedora 70 k perl-Symbol  noarch 1.08-471.fc34 fedora 26 k perl-constant  noarch 1.33-459.fc34 fedora 23 k perl-generators  noarch 1.11-10.fc34 fedora 16 k perl-interpreter  x86_64 4:5.32.1-471.fc34 fedora 83 k perl-lib  x86_64 0.65-471.fc34 fedora 26 k perl-libs  x86_64 4:5.32.1-471.fc34 fedora 2.1 M perl-vars  noarch 1.05-471.fc34 fedora 24 k Installing dependencies: annobin  x86_64 9.60-1.fc34 fedora 134 k cpp  x86_64 11.0.0-0.19.fc34 fedora 10 M emacs-filesystem  noarch 1:27.1-3.fc34 copr_base 8.7 k gc  x86_64 8.0.4-5.fc34 copr_base 105 k glibc-devel  x86_64 2.33-2.fc34 fedora 127 k glibc-headers-x86  noarch 2.33-2.fc34 fedora 514 k groff-base  x86_64 1.22.4-5.fc34 fedora 1.1 M guile22  x86_64 2.2.7-2.fc34 copr_base 6.5 M isl  x86_64 0.16.1-13.fc34 fedora 884 k kernel-headers  x86_64 5.11.0-1.fc34 fedora 1.2 M libedit  x86_64 3.1-35.20210216cvs.fc34 fedora 107 k libgfortran  x86_64 11.0.0-0.19.fc34 fedora 796 k libmpc  x86_64 1.2.1-2.fc34 fedora 63 k libquadmath  x86_64 11.0.0-0.19.fc34 fedora 197 k libquadmath-devel  x86_64 11.0.0-0.19.fc34 fedora 35 k libstdc++-devel  x86_64 11.0.0-0.19.fc34 fedora 2.2 M libtool-ltdl  x86_64 2.4.6-40.fc34 copr_base 37 k libxcrypt-devel  x86_64 4.4.18-1.fc34 fedora 29 k llvm-libs  x86_64 11.1.0-0.3.rc2.fc34 fedora 22 M m4  x86_64 1.4.18-17.fc34 copr_base 212 k muParser  x86_64 2.3.2-2.fc34 fedora 155 k ncurses  x86_64 6.2-4.20200222.fc34 fedora 396 k perl-B  x86_64 1.80-471.fc34 fedora 192 k perl-DynaLoader  x86_64 1.47-471.fc34 fedora 40 k perl-Encode  x86_64 4:3.08-459.fc34 fedora 1.7 M perl-Errno  x86_64 1.30-471.fc34 fedora 26 k perl-Fcntl  x86_64 1.13-471.fc34 fedora 32 k perl-Fedora-VSP  noarch 0.001-21.fc34 fedora 24 k perl-File-Compare  noarch 1.100.600-471.fc34 fedora 25 k perl-File-Copy  noarch 2.34-471.fc34 fedora 32 k perl-File-Find  noarch 1.37-471.fc34 fedora 37 k perl-File-Path  noarch 2.18-2.fc34 fedora 36 k perl-File-Temp  noarch 1:0.231.100-2.fc34 fedora 60 k perl-File-stat  noarch 1.09-471.fc34 fedora 29 k perl-Getopt-Std  noarch 1.12-471.fc34 fedora 27 k perl-HTTP-Tiny  noarch 0.076-458.fc34 fedora 55 k perl-MIME-Base64  x86_64 3.16-2.fc34 fedora 30 k perl-Pod-Escapes  noarch 1:1.07-458.fc34 fedora 20 k perl-Pod-Perldoc  noarch 3.28.01-459.fc34 fedora 85 k perl-Pod-Simple  noarch 1:3.42-2.fc34 fedora 216 k perl-Pod-Usage  noarch 4:2.01-2.fc34 fedora 41 k perl-SelectSaver  noarch 1.02-471.fc34 fedora 23 k perl-Socket  x86_64 4:2.031-2.fc34 fedora 56 k perl-Storable  x86_64 1:3.21-458.fc34 fedora 97 k perl-Term-ANSIColor  noarch 5.01-459.fc34 fedora 49 k perl-Term-Cap  noarch 1.17-458.fc34 fedora 22 k perl-Text-ParseWords  noarch 3.30-458.fc34 fedora 16 k perl-Text-Tabs+Wrap  noarch 2013.0523-458.fc34 fedora 23 k perl-Thread-Queue  noarch 3.14-458.fc34 fedora 22 k perl-Time-Local  noarch 2:1.300-5.fc34 fedora 34 k perl-if  noarch 0.60.800-471.fc34 fedora 25 k perl-macros  noarch 4:5.32.1-471.fc34 fedora 22 k perl-mro  x86_64 1.23-471.fc34 fedora 40 k perl-overload  noarch 1.31-471.fc34 fedora 57 k perl-overloading  noarch 0.02-471.fc34 fedora 24 k perl-parent  noarch 1:0.238-458.fc34 fedora 14 k perl-podlators  noarch 1:4.14-458.fc34 fedora 113 k perl-subs  noarch 1.03-471.fc34 fedora 23 k perl-threads  x86_64 1:2.25-458.fc34 fedora 58 k perl-threads-shared  x86_64 1.61-458.fc34 fedora 44 k Transaction Summary ================================================================================ Install 88 Packages Total size: 110 M Total download size: 27 M Installed size: 358 M Downloading Packages: [SKIPPED] autoconf-2.71-1.fc34.noarch.rpm: Already downloaded [SKIPPED] emacs-filesystem-27.1-3.fc34.noarch.rpm: Already downloaded [SKIPPED] gc-8.0.4-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.6-40.fc34.x86_64.rpm: Already downloaded [SKIPPED] m4-1.4.18-17.fc34.x86_64.rpm: Already downloaded [SKIPPED] annobin-9.60-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] automake-1.16.2-4.fc34.noarch.rpm: Already downloaded [SKIPPED] cpp-11.0.0-0.19.fc34.x86_64.rpm: Already downloaded [SKIPPED] gcc-11.0.0-0.19.fc34.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.33-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.33-2.fc34.noarch.rpm: Already downloaded [SKIPPED] groff-base-1.22.4-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] isl-0.16.1-13.fc34.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-5.11.0-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] libedit-3.1-35.20210216cvs.fc34.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.18-1.fc34.x86_64.rpm: Already downloaded [SKIPPED] llvm-libs-11.1.0-0.3.rc2.fc34.x86_64.rpm: Already downloaded [SKIPPED] make-4.3-5.fc34.x86_64.rpm: Already downloaded [SKIPPED] ncurses-6.2-4.20200222.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-B-1.80-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Carp-1.50-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.174-460.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.47-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Encode-3.08-459.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Errno-1.30-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Exporter-5.74-459.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.13-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.85-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-File-Compare-1.100.600-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-File-Copy-2.34-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-File-Find-1.37-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-2.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-2.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.09-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.52-2.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.12-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.076-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.43-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.21-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-POSIX-1.94-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-PathTools-3.78-459.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-459.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.42-2.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.01-2.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.55-458.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.031-2.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Storable-3.21-458.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-Symbol-1.08-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-459.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.17-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.30-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2013.0523-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Thread-Queue-3.14-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.300-5.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-459.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.60.800-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.32.1-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-libs-5.32.1-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-mro-1.23-471.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-overload-1.31-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.238-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-4.14-458.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-subs-1.03-471.fc34.noarch.rpm: Already downloaded [SKIPPED] perl-threads-2.25-458.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-threads-shared-1.61-458.fc34.x86_64.rpm: Already downloaded [SKIPPED] perl-vars-1.05-471.fc34.noarch.rpm: Already downloaded (74/88): libtool-2.4.6-40.fc34.x86_64.rpm 22 MB/s | 579 kB 00:00 (75/88): libgfortran-11.0.0-0.19.fc34.x86_64.rp 7.3 MB/s | 796 kB 00:00 (76/88): libquadmath-11.0.0-0.19.fc34.x86_64.rp 7.7 MB/s | 197 kB 00:00 (77/88): libquadmath-devel-11.0.0-0.19.fc34.x86 2.9 MB/s | 35 kB 00:00 (78/88): libstdc++-devel-11.0.0-0.19.fc34.x86_6 18 MB/s | 2.2 MB 00:00 (79/88): muParser-2.3.2-2.fc34.x86_64.rpm 10 MB/s | 155 kB 00:00 (80/88): muParser-devel-2.3.2-2.fc34.x86_64.rpm 1.1 MB/s | 26 kB 00:00 (81/88): perl-Fedora-VSP-0.001-21.fc34.noarch.r 2.0 MB/s | 24 kB 00:00 (82/88): perl-FindBin-1.51-471.fc34.noarch.rpm 2.1 MB/s | 25 kB 00:00 (83/88): perl-Math-Complex-1.59-471.fc34.noarch 5.3 MB/s | 59 kB 00:00 (84/88): perl-generators-1.11-10.fc34.noarch.rp 1.3 MB/s | 16 kB 00:00 (85/88): perl-lib-0.65-471.fc34.x86_64.rpm 2.5 MB/s | 26 kB 00:00 (86/88): perl-macros-5.32.1-471.fc34.noarch.rpm 1.9 MB/s | 22 kB 00:00 (87/88): gcc-gfortran-11.0.0-0.19.fc34.x86_64.r 18 MB/s | 11 MB 00:00 (88/88): gcc-c++-11.0.0-0.19.fc34.x86_64.rpm 15 MB/s | 12 MB 00:00 -------------------------------------------------------------------------------- Total 20 MB/s | 27 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.2.1-2.fc34.x86_64 1/88 Installing : libquadmath-11.0.0-0.19.fc34.x86_64 2/88 Installing : libgfortran-11.0.0-0.19.fc34.x86_64 3/88 Installing : cpp-11.0.0-0.19.fc34.x86_64 4/88 Installing : ncurses-6.2-4.20200222.fc34.x86_64 5/88 Installing : muParser-2.3.2-2.fc34.x86_64 6/88 Installing : libstdc++-devel-11.0.0-0.19.fc34.x86_64 7/88 Installing : libedit-3.1-35.20210216cvs.fc34.x86_64 8/88 Installing : llvm-libs-11.1.0-0.3.rc2.fc34.x86_64 9/88 Installing : kernel-headers-5.11.0-1.fc34.x86_64 10/88 Installing : isl-0.16.1-13.fc34.x86_64 11/88 Running scriptlet: groff-base-1.22.4-5.fc34.x86_64 12/88 Installing : groff-base-1.22.4-5.fc34.x86_64 12/88 Running scriptlet: groff-base-1.22.4-5.fc34.x86_64 12/88 Installing : perl-if-0.60.800-471.fc34.noarch 13/88 Installing : perl-Time-Local-2:1.300-5.fc34.noarch 14/88 Installing : perl-File-Path-2.18-2.fc34.noarch 15/88 Installing : perl-Pod-Escapes-1:1.07-458.fc34.noarch 16/88 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muParser-devel-2.3.2-2.fc34.x86_64 88/88 Verifying : autoconf-2.71-1.fc34.noarch 1/88 Verifying : emacs-filesystem-1:27.1-3.fc34.noarch 2/88 Verifying : gc-8.0.4-5.fc34.x86_64 3/88 Verifying : guile22-2.2.7-2.fc34.x86_64 4/88 Verifying : libtool-2.4.6-40.fc34.x86_64 5/88 Verifying : libtool-ltdl-2.4.6-40.fc34.x86_64 6/88 Verifying : m4-1.4.18-17.fc34.x86_64 7/88 Verifying : annobin-9.60-1.fc34.x86_64 8/88 Verifying : automake-1.16.2-4.fc34.noarch 9/88 Verifying : cpp-11.0.0-0.19.fc34.x86_64 10/88 Verifying : gcc-11.0.0-0.19.fc34.x86_64 11/88 Verifying : gcc-c++-11.0.0-0.19.fc34.x86_64 12/88 Verifying : gcc-gfortran-11.0.0-0.19.fc34.x86_64 13/88 Verifying : glibc-devel-2.33-2.fc34.x86_64 14/88 Verifying : glibc-headers-x86-2.33-2.fc34.noarch 15/88 Verifying : groff-base-1.22.4-5.fc34.x86_64 16/88 Verifying : isl-0.16.1-13.fc34.x86_64 17/88 Verifying : kernel-headers-5.11.0-1.fc34.x86_64 18/88 Verifying : libedit-3.1-35.20210216cvs.fc34.x86_64 19/88 Verifying : libgfortran-11.0.0-0.19.fc34.x86_64 20/88 Verifying : libmpc-1.2.1-2.fc34.x86_64 21/88 Verifying : libquadmath-11.0.0-0.19.fc34.x86_64 22/88 Verifying : libquadmath-devel-11.0.0-0.19.fc34.x86_64 23/88 Verifying : libstdc++-devel-11.0.0-0.19.fc34.x86_64 24/88 Verifying : libxcrypt-devel-4.4.18-1.fc34.x86_64 25/88 Verifying : llvm-libs-11.1.0-0.3.rc2.fc34.x86_64 26/88 Verifying : make-1:4.3-5.fc34.x86_64 27/88 Verifying : muParser-2.3.2-2.fc34.x86_64 28/88 Verifying : muParser-devel-2.3.2-2.fc34.x86_64 29/88 Verifying : ncurses-6.2-4.20200222.fc34.x86_64 30/88 Verifying : perl-B-1.80-471.fc34.x86_64 31/88 Verifying : perl-Carp-1.50-458.fc34.noarch 32/88 Verifying : perl-Class-Struct-0.66-471.fc34.noarch 33/88 Verifying : perl-Data-Dumper-2.174-460.fc34.x86_64 34/88 Verifying : perl-DynaLoader-1.47-471.fc34.x86_64 35/88 Verifying : perl-Encode-4:3.08-459.fc34.x86_64 36/88 Verifying : perl-Errno-1.30-471.fc34.x86_64 37/88 Verifying : perl-Exporter-5.74-459.fc34.noarch 38/88 Verifying : perl-Fcntl-1.13-471.fc34.x86_64 39/88 Verifying : perl-Fedora-VSP-0.001-21.fc34.noarch 40/88 Verifying : perl-File-Basename-2.85-471.fc34.noarch 41/88 Verifying : perl-File-Compare-1.100.600-471.fc34.noarch 42/88 Verifying : perl-File-Copy-2.34-471.fc34.noarch 43/88 Verifying : perl-File-Find-1.37-471.fc34.noarch 44/88 Verifying : perl-File-Path-2.18-2.fc34.noarch 45/88 Verifying : perl-File-Temp-1:0.231.100-2.fc34.noarch 46/88 Verifying : perl-File-stat-1.09-471.fc34.noarch 47/88 Verifying : perl-FindBin-1.51-471.fc34.noarch 48/88 Verifying : perl-Getopt-Long-1:2.52-2.fc34.noarch 49/88 Verifying : perl-Getopt-Std-1.12-471.fc34.noarch 50/88 Verifying : perl-HTTP-Tiny-0.076-458.fc34.noarch 51/88 Verifying : perl-IO-1.43-471.fc34.x86_64 52/88 Verifying : perl-IPC-Open3-1.21-471.fc34.noarch 53/88 Verifying : perl-MIME-Base64-3.16-2.fc34.x86_64 54/88 Verifying : perl-Math-Complex-1.59-471.fc34.noarch 55/88 Verifying : perl-POSIX-1.94-471.fc34.x86_64 56/88 Verifying : perl-PathTools-3.78-459.fc34.x86_64 57/88 Verifying : perl-Pod-Escapes-1:1.07-458.fc34.noarch 58/88 Verifying : perl-Pod-Perldoc-3.28.01-459.fc34.noarch 59/88 Verifying : perl-Pod-Simple-1:3.42-2.fc34.noarch 60/88 Verifying : perl-Pod-Usage-4:2.01-2.fc34.noarch 61/88 Verifying : perl-Scalar-List-Utils-4:1.55-458.fc34.x86_64 62/88 Verifying : perl-SelectSaver-1.02-471.fc34.noarch 63/88 Verifying : perl-Socket-4:2.031-2.fc34.x86_64 64/88 Verifying : perl-Storable-1:3.21-458.fc34.x86_64 65/88 Verifying : perl-Symbol-1.08-471.fc34.noarch 66/88 Verifying : perl-Term-ANSIColor-5.01-459.fc34.noarch 67/88 Verifying : perl-Term-Cap-1.17-458.fc34.noarch 68/88 Verifying : perl-Text-ParseWords-3.30-458.fc34.noarch 69/88 Verifying : perl-Text-Tabs+Wrap-2013.0523-458.fc34.noarch 70/88 Verifying : perl-Thread-Queue-3.14-458.fc34.noarch 71/88 Verifying : perl-Time-Local-2:1.300-5.fc34.noarch 72/88 Verifying : perl-constant-1.33-459.fc34.noarch 73/88 Verifying : perl-generators-1.11-10.fc34.noarch 74/88 Verifying : perl-if-0.60.800-471.fc34.noarch 75/88 Verifying : perl-interpreter-4:5.32.1-471.fc34.x86_64 76/88 Verifying : perl-lib-0.65-471.fc34.x86_64 77/88 Verifying : perl-libs-4:5.32.1-471.fc34.x86_64 78/88 Verifying : perl-macros-4:5.32.1-471.fc34.noarch 79/88 Verifying : perl-mro-1.23-471.fc34.x86_64 80/88 Verifying : perl-overload-1.31-471.fc34.noarch 81/88 Verifying : perl-overloading-0.02-471.fc34.noarch 82/88 Verifying : perl-parent-1:0.238-458.fc34.noarch 83/88 Verifying : perl-podlators-1:4.14-458.fc34.noarch 84/88 Verifying : perl-subs-1.03-471.fc34.noarch 85/88 Verifying : perl-threads-1:2.25-458.fc34.x86_64 86/88 Verifying : perl-threads-shared-1.61-458.fc34.x86_64 87/88 Verifying : perl-vars-1.05-471.fc34.noarch 88/88 Installed: annobin-9.60-1.fc34.x86_64 autoconf-2.71-1.fc34.noarch automake-1.16.2-4.fc34.noarch cpp-11.0.0-0.19.fc34.x86_64 emacs-filesystem-1:27.1-3.fc34.noarch gc-8.0.4-5.fc34.x86_64 gcc-11.0.0-0.19.fc34.x86_64 gcc-c++-11.0.0-0.19.fc34.x86_64 gcc-gfortran-11.0.0-0.19.fc34.x86_64 glibc-devel-2.33-2.fc34.x86_64 glibc-headers-x86-2.33-2.fc34.noarch groff-base-1.22.4-5.fc34.x86_64 guile22-2.2.7-2.fc34.x86_64 isl-0.16.1-13.fc34.x86_64 kernel-headers-5.11.0-1.fc34.x86_64 libedit-3.1-35.20210216cvs.fc34.x86_64 libgfortran-11.0.0-0.19.fc34.x86_64 libmpc-1.2.1-2.fc34.x86_64 libquadmath-11.0.0-0.19.fc34.x86_64 libquadmath-devel-11.0.0-0.19.fc34.x86_64 libstdc++-devel-11.0.0-0.19.fc34.x86_64 libtool-2.4.6-40.fc34.x86_64 libtool-ltdl-2.4.6-40.fc34.x86_64 libxcrypt-devel-4.4.18-1.fc34.x86_64 llvm-libs-11.1.0-0.3.rc2.fc34.x86_64 m4-1.4.18-17.fc34.x86_64 make-1:4.3-5.fc34.x86_64 muParser-2.3.2-2.fc34.x86_64 muParser-devel-2.3.2-2.fc34.x86_64 ncurses-6.2-4.20200222.fc34.x86_64 perl-B-1.80-471.fc34.x86_64 perl-Carp-1.50-458.fc34.noarch perl-Class-Struct-0.66-471.fc34.noarch perl-Data-Dumper-2.174-460.fc34.x86_64 perl-DynaLoader-1.47-471.fc34.x86_64 perl-Encode-4:3.08-459.fc34.x86_64 perl-Errno-1.30-471.fc34.x86_64 perl-Exporter-5.74-459.fc34.noarch perl-Fcntl-1.13-471.fc34.x86_64 perl-Fedora-VSP-0.001-21.fc34.noarch perl-File-Basename-2.85-471.fc34.noarch perl-File-Compare-1.100.600-471.fc34.noarch perl-File-Copy-2.34-471.fc34.noarch perl-File-Find-1.37-471.fc34.noarch perl-File-Path-2.18-2.fc34.noarch perl-File-Temp-1:0.231.100-2.fc34.noarch perl-File-stat-1.09-471.fc34.noarch perl-FindBin-1.51-471.fc34.noarch perl-Getopt-Long-1:2.52-2.fc34.noarch perl-Getopt-Std-1.12-471.fc34.noarch perl-HTTP-Tiny-0.076-458.fc34.noarch perl-IO-1.43-471.fc34.x86_64 perl-IPC-Open3-1.21-471.fc34.noarch perl-MIME-Base64-3.16-2.fc34.x86_64 perl-Math-Complex-1.59-471.fc34.noarch perl-POSIX-1.94-471.fc34.x86_64 perl-PathTools-3.78-459.fc34.x86_64 perl-Pod-Escapes-1:1.07-458.fc34.noarch perl-Pod-Perldoc-3.28.01-459.fc34.noarch perl-Pod-Simple-1:3.42-2.fc34.noarch perl-Pod-Usage-4:2.01-2.fc34.noarch perl-Scalar-List-Utils-4:1.55-458.fc34.x86_64 perl-SelectSaver-1.02-471.fc34.noarch perl-Socket-4:2.031-2.fc34.x86_64 perl-Storable-1:3.21-458.fc34.x86_64 perl-Symbol-1.08-471.fc34.noarch perl-Term-ANSIColor-5.01-459.fc34.noarch perl-Term-Cap-1.17-458.fc34.noarch perl-Text-ParseWords-3.30-458.fc34.noarch perl-Text-Tabs+Wrap-2013.0523-458.fc34.noarch perl-Thread-Queue-3.14-458.fc34.noarch perl-Time-Local-2:1.300-5.fc34.noarch perl-constant-1.33-459.fc34.noarch perl-generators-1.11-10.fc34.noarch perl-if-0.60.800-471.fc34.noarch perl-interpreter-4:5.32.1-471.fc34.x86_64 perl-lib-0.65-471.fc34.x86_64 perl-libs-4:5.32.1-471.fc34.x86_64 perl-macros-4:5.32.1-471.fc34.noarch perl-mro-1.23-471.fc34.x86_64 perl-overload-1.31-471.fc34.noarch perl-overloading-0.02-471.fc34.noarch perl-parent-1:0.238-458.fc34.noarch perl-podlators-1:4.14-458.fc34.noarch perl-subs-1.03-471.fc34.noarch perl-threads-1:2.25-458.fc34.x86_64 perl-threads-shared-1.61-458.fc34.x86_64 perl-vars-1.05-471.fc34.noarch Complete! Finish: build setup for bionetgen-2.5.2-2.fc34.src.rpm Start: rpmbuild bionetgen-2.5.2-2.fc34.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1611619200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.WLzrEH + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-2.5.2 + /usr/bin/mkdir -p bionetgen-2.5.2 + cd bionetgen-2.5.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.5.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd bionetgen-BioNetGen-2.5.2 ~/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2 ~/build/BUILD/bionetgen-2.5.2 + rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3 cvode-2.6.0/README cvode-2.6.0/INSTALL_NOTES cvode-2.6.0/LICENSE cvode-2.6.0/Makefile.in cvode-2.6.0/configure.ac cvode-2.6.0/acinclude.m4 cvode-2.6.0/config.hin cvode-2.6.0/configure cvode-2.6.0/CMakeLists.txt cvode-2.6.0/config/config.guess cvode-2.6.0/config/config.sub cvode-2.6.0/config/install-sh cvode-2.6.0/config/mkinstalldirs cvode-2.6.0/config/rminstalldirs cvode-2.6.0/config/ltmain.sh cvode-2.6.0/config/mod_c.m4 cvode-2.6.0/config/mod_fortran.m4 cvode-2.6.0/config/cust_general.m4 cvode-2.6.0/config/CheckFortranFunctionExists.cmake cvode-2.6.0/config/SundialsFortran.cmake cvode-2.6.0/config/SundialsLapack.cmake cvode-2.6.0/config/SundialsMPIC.cmake cvode-2.6.0/config/SundialsMPIF.cmake cvode-2.6.0/config/FindLAPACK.cmake cvode-2.6.0/config/FindBLAS.cmake cvode-2.6.0/config/FindMPI.cmake cvode-2.6.0/bin/sundials-config.in cvode-2.6.0/bin/fortran-update.in cvode-2.6.0/bin/makefile-update.in cvode-2.6.0/include/sundials/sundials_config.in cvode-2.6.0/include/sundials/sundials_types.h cvode-2.6.0/include/sundials/sundials_math.h cvode-2.6.0/include/sundials/sundials_nvector.h cvode-2.6.0/include/sundials/sundials_fnvector.h cvode-2.6.0/include/sundials/sundials_dense.h cvode-2.6.0/include/sundials/sundials_direct.h cvode-2.6.0/include/sundials/sundials_band.h cvode-2.6.0/include/sundials/sundials_lapack.h cvode-2.6.0/include/sundials/sundials_spgmr.h cvode-2.6.0/include/sundials/sundials_spbcgs.h cvode-2.6.0/include/sundials/sundials_sptfqmr.h cvode-2.6.0/include/sundials/sundials_iterative.h cvode-2.6.0/include/nvector/nvector_serial.h cvode-2.6.0/include/nvector/nvector_parallel.h cvode-2.6.0/src/sundials/README cvode-2.6.0/src/sundials/Makefile.in cvode-2.6.0/src/sundials/CMakeLists.txt cvode-2.6.0/src/sundials/sundials_math.c cvode-2.6.0/src/sundials/sundials_nvector.c cvode-2.6.0/src/sundials/sundials_dense.c cvode-2.6.0/src/sundials/sundials_direct.c cvode-2.6.0/src/sundials/sundials_band.c cvode-2.6.0/src/sundials/sundials_spgmr.c cvode-2.6.0/src/sundials/sundials_spbcgs.c cvode-2.6.0/src/sundials/sundials_sptfqmr.c cvode-2.6.0/src/sundials/sundials_iterative.c cvode-2.6.0/src/nvec_ser/README cvode-2.6.0/src/nvec_ser/Makefile.in cvode-2.6.0/src/nvec_ser/CMakeLists.txt cvode-2.6.0/src/nvec_ser/fnvector_serial.h cvode-2.6.0/src/nvec_ser/nvector_serial.c cvode-2.6.0/src/nvec_ser/fnvector_serial.c cvode-2.6.0/src/nvec_par/README cvode-2.6.0/src/nvec_par/Makefile.in cvode-2.6.0/src/nvec_par/CMakeLists.txt cvode-2.6.0/src/nvec_par/fnvector_parallel.h cvode-2.6.0/src/nvec_par/nvector_parallel.c cvode-2.6.0/src/nvec_par/fnvector_parallel.c cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in cvode-2.6.0/examples/templates/makefile_serial_C_ex.in cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in cvode-2.6.0/doc/cvode/cv_guide.pdf cvode-2.6.0/doc/cvode/cv_examples.pdf cvode-2.6.0/include/cvode/cvode.h cvode-2.6.0/include/cvode/cvode_direct.h cvode-2.6.0/include/cvode/cvode_dense.h cvode-2.6.0/include/cvode/cvode_band.h cvode-2.6.0/include/cvode/cvode_lapack.h cvode-2.6.0/include/cvode/cvode_diag.h cvode-2.6.0/include/cvode/cvode_spgmr.h cvode-2.6.0/include/cvode/cvode_spbcgs.h cvode-2.6.0/include/cvode/cvode_sptfqmr.h cvode-2.6.0/include/cvode/cvode_spils.h cvode-2.6.0/include/cvode/cvode_bandpre.h cvode-2.6.0/include/cvode/cvode_bbdpre.h cvode-2.6.0/src/cvode/LICENSE cvode-2.6.0/src/cvode/README cvode-2.6.0/src/cvode/Makefile.in cvode-2.6.0/src/cvode/CMakeLists.txt cvode-2.6.0/src/cvode/cvode.c cvode-2.6.0/src/cvode/cvode_io.c cvode-2.6.0/src/cvode/cvode_direct.c cvode-2.6.0/src/cvode/cvode_dense.c cvode-2.6.0/src/cvode/cvode_band.c cvode-2.6.0/src/cvode/cvode_lapack.c cvode-2.6.0/src/cvode/cvode_diag.c cvode-2.6.0/src/cvode/cvode_spils.c cvode-2.6.0/src/cvode/cvode_spgmr.c cvode-2.6.0/src/cvode/cvode_spbcgs.c cvode-2.6.0/src/cvode/cvode_sptfqmr.c cvode-2.6.0/src/cvode/cvode_bandpre.c cvode-2.6.0/src/cvode/cvode_bbdpre.c cvode-2.6.0/src/cvode/cvode_impl.h cvode-2.6.0/src/cvode/cvode_direct_impl.h cvode-2.6.0/src/cvode/cvode_diag_impl.h cvode-2.6.0/src/cvode/cvode_spils_impl.h cvode-2.6.0/src/cvode/cvode_bandpre_impl.h cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h cvode-2.6.0/src/cvode/fcmix/Makefile.in cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt cvode-2.6.0/src/cvode/fcmix/fcvode.c cvode-2.6.0/src/cvode/fcmix/fcvewt.c cvode-2.6.0/src/cvode/fcmix/fcvpreco.c cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c cvode-2.6.0/src/cvode/fcmix/fcvband.c cvode-2.6.0/src/cvode/fcmix/fcvdense.c cvode-2.6.0/src/cvode/fcmix/fcvlapack.c cvode-2.6.0/src/cvode/fcmix/fcvlapband.c cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c cvode-2.6.0/src/cvode/fcmix/fcvbp.c cvode-2.6.0/src/cvode/fcmix/fcvbbd.c cvode-2.6.0/src/cvode/fcmix/fcvroot.c cvode-2.6.0/src/cvode/fcmix/fcvode.h cvode-2.6.0/src/cvode/fcmix/fcvbp.h cvode-2.6.0/src/cvode/fcmix/fcvbbd.h cvode-2.6.0/src/cvode/fcmix/fcvroot.h cvode-2.6.0/examples/cvode/serial/README cvode-2.6.0/examples/cvode/serial/Makefile.in cvode-2.6.0/examples/cvode/serial/CMakeLists.txt cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out cvode-2.6.0/examples/cvode/fcmix_serial/README cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out cvode-2.6.0/examples/cvode/parallel/README cvode-2.6.0/examples/cvode/parallel/Makefile.in cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/README cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out ~/build/BUILD/bionetgen-2.5.2 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.U98UBs + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3 ~/build/BUILD/bionetgen-2.5.2 + cd bionetgen-2.5.2 + pushd bionetgen-BioNetGen-2.5.2/bng2/Network3 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' cvode-2.6.0/configure.ac + sed -i 's/muparser_.*//' configure.ac Makefile.am + sed -i -r 's!(run_network_LDADD =).*!\1 libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser!' src/Makefile.am + autoreconf -iv --no-recursive autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal -I m4 aclocal: warning: couldn't open directory 'm4': No such file or directory autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: aclocal -I m4 autoreconf: running: /usr/bin/autoconf autoreconf: running: /usr/bin/autoheader autoreconf: running: automake --add-missing --copy --no-force configure.ac:12: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' autoreconf: Leaving directory '.' + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2021-02-22 14:10:16.427486048 +0000 +++ ./configure 2021-02-22 14:10:17.629488107 +0000 @@ -1710,7 +1710,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2021-02-22 14:10:17.629488107 +0000 +++ ./configure 2021-02-22 14:10:17.653488148 +0000 @@ -7424,7 +7424,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="sed -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -19437,7 +19437,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure --- ./cvode-2.6.0/configure.backup 2009-05-10 00:03:02.000000000 +0000 +++ ./cvode-2.6.0/configure 2021-02-22 14:10:17.718488260 +0000 @@ -13751,7 +13751,7 @@ sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Transform an extracted symbol line into a proper C declaration -lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'" +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./cvode-2.6.0/config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.sub ++ basename ./cvode-2.6.0/config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./cvode-2.6.0/config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './cvode-2.6.0/config/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./cvode-2.6.0/config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.guess ++ basename ./cvode-2.6.0/config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./cvode-2.6.0/config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './cvode-2.6.0/config/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./cvode-2.6.0/config/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CC=gcc CXX=g++ F77=gfortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for x86_64-redhat-linux-gnu-ar... no checking for x86_64-redhat-linux-gnu-lib... no checking for x86_64-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for x86_64-redhat-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 7430: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for x86_64-redhat-linux-gnu-gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=x86_64-redhat-linux-gnu' 'host_alias=x86_64-redhat-linux-gnu' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' 'LT_SYS_LIBRARY_PATH=/usr/lib64:' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' --cache-file=/dev/null --srcdir=. --------------------------------- Running SUNDIALS Configure Script --------------------------------- Initialization -------------- checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c C Compiler Settings ------------------- checking for x86_64-redhat-linux-gnu-cc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking floating-point data type to use... double checking for C compiler flags... none checking how to run the C preprocessor... gcc -E checking for C/C++ preprocessor flags... none checking for linker flags... none checking for extra libraries... none checking for ANSI C header files... yes checking for stdlib.h... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for abs in -lm... yes checking for fabs in -lm... yes checking for pow in -lm... yes checking for sqrt in -lm... yes checking for additional required C libraries... -lm checking for int... yes checking size of int... 4 checking for long int... yes checking size of long int... 8 checking for double... yes checking size of double... 8 checking for egrep... (cached) /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking if gcc is a C++ compiler... no Fortran Settings ---------------- checking for x86_64-redhat-linux-gnu-f77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for extra Fortran compiler flags... none checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-redhat-linux/11 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../.. -lgfortran -lm -lquadmath checking which linker to use... gfortran checking for Fortran name-mangling scheme of C identifiers... lower case + one underscore checking for Fortran name-mangling scheme of C identifiers with underscores... lower case + one underscore checking for dgemm_... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking for dgemm_ in -lblas... no checking for dgemm_ in -lblas... (cached) no checking for Blas/Lapack library linkage... "no" Unable to determine Blas/Lapack library linkage. Try using --with-blas and --with-lapack. Disabling compilation of Blas/Lapack interfaces... MPI-C Settings -------------- checking if using MPI-C script... yes checking if absolute path to mpicc was given... no checking for mpicc... none Unable to find a functional MPI-C compiler. configure: WARNING: cannot find MPI-C compiler Try using --with-mpicc to specify a MPI-C compiler script, --with-mpi-incdir, --with-mpi-libdir and --with-mpi-libs to specify the locations of all relevant MPI files, or --with-mpi-root to specify the base installation directory of the MPI implementation to be used. Disabling the parallel NVECTOR module and all parallel examples... Libtool Settings ---------------- checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for x86_64-redhat-linux-gnu-ar... no checking for ar... ar checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Create Makefiles and configuration files ---------------------------------------- configure: creating ./config.status config.status: creating Makefile config.status: creating src/sundials/Makefile config.status: creating src/nvec_ser/Makefile config.status: creating src/cvode/Makefile config.status: creating src/cvode/fcmix/Makefile config.status: creating include/sundials/sundials_config.h config.status: creating bin/sundials-config config.status: creating config.h *************** * WARNING * *************** At least one warning was issued. Some features were disabled. Review the configure output and/or the contents of config.log before proceeding with the build. ------------------------------ SUNDIALS Configuration Summary ------------------------------ Configuration ------------- Host System: x86_64-redhat-linux-gnu Build System: x86_64-redhat-linux-gnu C Preprocessor: gcc -E C Preprocessor Flags: C Compiler: gcc C Compiler Flags -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection C Linker: gcc Linker Flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld Libraries: -lm Fortran Compiler: gfortran Fortran Compiler Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules Fortran Linker: gfortran Extra Fortran Libraries: -L/usr/lib/gcc/x86_64-redhat-linux/11 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../.. -lgfortran -lm -lquadmath srcdir: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0 builddir: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0 prefix: /usr exec_prefix: /usr includedir: /usr/include libdir: /usr/lib64 Modules ------- CVODE FCVODE Type 'make' and then 'make install' to build and install SUNDIALS 2.4.0. ---------------------------------- Finished SUNDIALS Configure Script ---------------------------------- ++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C cvode-2.6.0 V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' ---------------------- Make src/sundials... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c -o sundials_direct.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c -o sundials_band.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c -o sundials_dense.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c -o sundials_iterative.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c -o sundials_math.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c -o sundials_nvector.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c -o sundials_spgmr.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c -o sundials_spbcgs.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c -o sundials_sptfqmr.o make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' ---------------------- Make src/nvec_ser... ---------------------- make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c -o fnvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fnvecserial.la fnvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 0:2:0 mkdir .libs ar cru .libs/libsundials_fnvecserial.a fnvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_fnvecserial.a creating libsundials_fnvecserial.la (cd .libs && rm -f libsundials_fnvecserial.la && ln -s ../libsundials_fnvecserial.la libsundials_fnvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c -o nvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_nvecserial.la nvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 0:2:0 ar cru .libs/libsundials_nvecserial.a nvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_nvecserial.a creating libsundials_nvecserial.la (cd .libs && rm -f libsundials_nvecserial.la && ln -s ../libsundials_nvecserial.la libsundials_nvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/nvec_ser' ---------------------- Make src/cvode... ---------------------- make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c -o cvode_io.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c -o cvode_direct.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c -o cvode_band.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c -o cvode_dense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c -o cvode_diag.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c -o cvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c -o cvode_spils.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c -o cvode_spbcgs.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c -o cvode_spgmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c -o cvode_sptfqmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c -o cvode_bandpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c -o cvode_bbdpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Nothing to be done for 'lib_without_bl'. make[4]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_cvode.la cvode.lo cvode_io.lo cvode_direct.lo cvode_band.lo cvode_dense.lo cvode_diag.lo cvode_spils.lo cvode_spbcgs.lo cvode_spgmr.lo cvode_sptfqmr.lo cvode_bandpre.lo cvode_bbdpre.lo ../../src/sundials/sundials_band.lo ../../src/sundials/sundials_dense.lo ../../src/sundials/sundials_direct.lo ../../src/sundials/sundials_iterative.lo ../../src/sundials/sundials_spgmr.lo ../../src/sundials/sundials_spbcgs.lo ../../src/sundials/sundials_sptfqmr.lo ../../src/sundials/sundials_math.lo ../../src/sundials/sundials_nvector.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 1:0:0 mkdir .libs ar cru .libs/libsundials_cvode.a cvode.o cvode_io.o cvode_direct.o cvode_band.o cvode_dense.o cvode_diag.o cvode_spils.o cvode_spbcgs.o cvode_spgmr.o cvode_sptfqmr.o cvode_bandpre.o cvode_bbdpre.o ../../src/sundials/sundials_band.o ../../src/sundials/sundials_dense.o ../../src/sundials/sundials_direct.o ../../src/sundials/sundials_iterative.o ../../src/sundials/sundials_spgmr.o ../../src/sundials/sundials_spbcgs.o ../../src/sundials/sundials_sptfqmr.o ../../src/sundials/sundials_math.o ../../src/sundials/sundials_nvector.o ranlib .libs/libsundials_cvode.a creating libsundials_cvode.la (cd .libs && rm -f libsundials_cvode.la && ln -s ../libsundials_cvode.la libsundials_cvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. ---------------------- Make src/cvode/fcmix... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c -o fcvband.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c -o fcvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c -o fcvdense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c -o fcvjtimes.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c -o fcvpreco.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c -o fcvbbd.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c -o fcvbp.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c -o fcvroot.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c -o fcvewt.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fcvode.la fcvode.lo fcvband.lo fcvdense.lo fcvjtimes.lo fcvpreco.lo fcvbbd.lo fcvbp.lo fcvroot.lo fcvewt.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -static -version-info 0:1:0 mkdir .libs ar cru .libs/libsundials_fcvode.a fcvode.o fcvband.o fcvdense.o fcvjtimes.o fcvpreco.o fcvbbd.o fcvbp.o fcvroot.o fcvewt.o ranlib .libs/libsundials_fcvode.a creating libsundials_fcvode.la (cd .libs && rm -f libsundials_fcvode.la && ln -s ../libsundials_fcvode.la libsundials_fcvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C src V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)': network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1132 | register int i; | ^ network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)': network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1543 | register int i; | ^ network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)': network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1925 | register int i; | ^ network.cpp: In function 'int n_species_active()': network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2068 | register int i; | ^ network.cpp: In function 'int get_conc_network(double*)': network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2088 | register int i; | ^ network.cpp: In function 'int set_conc_network(double*)': network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^ network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^~~~~~~~~ network.cpp: In function 'int rxn_rates_network(double*, int)': network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2729 | register int i; | ^ network.cpp: In function 'int print_derivs_network(FILE*)': network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2957 | register int i/*,j*/; | ^ network.cpp: In function 'int print_derivs_species_network(FILE*)': network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2990 | register int i/*,j*/; | ^ network.cpp: In function 'int print_rates_network(FILE*, int)': network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3019 | register int i; | ^ network.cpp: In function 'void sparse_jac_matlab(FILE*)': network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)': network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)': network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp: In function 'int print_flux_network(FILE*, double, int)': network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 4037 | register int i; | ^ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp run_network.cpp: In function 'int main(int, char**)': run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i/*, j*/; | ^ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 In file included from util/mathutils/cabs.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 util/mathutils/allocate.c: In function 'ALLOC_MATRIX': util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] 9 | register int i,j; | ^ util/mathutils/allocate.c: In function 'IALLOC_MATRIX': util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] 100 | register int i,j; | ^ util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] 191 | register int i,j; | ^ In file included from util/mathutils/allocate.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' In file included from util/mathutils/cadd.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 In file included from util/mathutils/cconj.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 In file included from util/mathutils/cmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 In file included from util/mathutils/complex_zero.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 In file included from util/mathutils/copy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 In file included from util/mathutils/cprob.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 In file included from util/mathutils/csub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 In file included from util/mathutils/dotp.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 In file included from util/mathutils/eigensystem.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 In file included from util/mathutils/expi.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 In file included from util/mathutils/gram_schmidt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/herm_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/herm_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 In file included from util/mathutils/icmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 In file included from util/mathutils/init.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 In file included from util/mathutils/integration.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 util/mathutils/linsolve.c: In function 'LINSOLVE': util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] 16 | register int i,j; | ^ util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] 16 | register int i,j; | ^ In file included from util/mathutils/linsolve.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 In file included from util/mathutils/matherr.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 In file included from util/mathutils/matrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 In file included from util/mathutils/matrix_elt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/matrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 In file included from util/mathutils/matrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 In file included from util/mathutils/matrixexp.c:5: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 util/mathutils/norm.c: In function 'NORM': util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] 14 | double norm; | ^~~~ In file included from util/mathutils/norm.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 util/mathutils/minimum.c: In function 'MIN_BRACKET': util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] 17 | double ulim,u,r,q,fu,dum; | ^~~ In file included from util/mathutils/minimum.c:3: At top level: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ util/mathutils/minimum.c: In function 'MIN_FIND': util/mathutils/minimum.c:117:38: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] 117 | if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) | ~~~~~^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 util/mathutils/normsq.c: In function 'NORMSQ': util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] 13 | double norm; | ^~~~ In file included from util/mathutils/normsq.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 In file included from util/mathutils/project.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 In file included from util/mathutils/random.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 In file included from util/mathutils/rcmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1 util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~~ util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~ In file included from util/mathutils/rect_transpose.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 In file included from util/mathutils/roots.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ util/mathutils/roots.c: In function 'ROOT_FIND': util/mathutils/roots.c:69:24: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] 69 | min2=fabs(e*q); | ~^~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' In file included from util/mathutils/scale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ In file included from util/mathutils/runge-kutta.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 In file included from util/mathutils/sum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 In file included from util/mathutils/splines.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/sym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/sym_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/sym_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/sympos_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 In file included from util/mathutils/svd.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main() | ^~~~ In file included from util/mathutils/test_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main(){ | ^~~~ util/mathutils/testdummy.c: In function 'main': util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] 5 | int incx=1; | ^~~~ util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | scanf("%d", &n); | ^~~~~~~~~~~~~~~ util/mathutils/testdummy.c:15:9: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 15 | scanf("%lf", x+i); | ^~~~~~~~~~~~~~~~~ In file included from util/mathutils/testdummy.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] 7 | main() | ^~~~ In file included from util/mathutils/testspline.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main(int argc, char *argv[]){ | ^~~~ util/mathutils/testgram.c: In function 'main': util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^ util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^ util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~~ util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~ util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] 5 | int nr, n_run; | ^~ In file included from util/mathutils/testgram.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main(int argc, char *argv[]){ | ^~~~ util/mathutils/testsvd.c: In function 'main': util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~~ util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~ util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^ In file included from util/mathutils/testsvd.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 In file included from util/mathutils/vector_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 In file included from util/mathutils/vector_dist.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 In file included from util/mathutils/zcopy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 In file included from util/mathutils/zdotc.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 In file included from util/mathutils/zdotu.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] 6 | main (int argc, char *argv[]) | ^~~~ util/mathutils/testutils.c: In function 'main': util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] 15 | dcomplex z1; | ^~ util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] 10 | int seed; | ^~~~ util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] 8 | int i,j,k; | ^ In file included from util/mathutils/testutils.c:2: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 In file included from util/mathutils/znorm.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1 In file included from util/mathutils/znormsq.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zrscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' In file included from util/mathutils/zscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 In file included from util/mathutils/zsum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' In file included from util/mathutils/zsym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cru .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a ../cvode-2.6.0/src/nvec_ser/.libs/libsundials_nvecserial.a ../cvode-2.6.0/src/cvode/.libs/libsundials_cvode.a -lm -lmuparser make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' ~/build/BUILD/bionetgen-2.5.2 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.L34cFw + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 ++ dirname /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 + cd bionetgen-2.5.2 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 'INSTALL=/usr/bin/install -p' -C bionetgen-BioNetGen-2.5.2/bng2/Network3/src make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Network3/src' + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bionetgen-BioNetGen-2.5.2/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen/ + cp -r bionetgen-BioNetGen-2.5.2/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen/ + cp -a bionetgen-BioNetGen-2.5.2/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen/ + rm -f /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_x86_64-linux + rm -f /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.5.2-2.fc34 --unique-debug-suffix -2.5.2-2.fc34.x86_64 --unique-debug-src-base bionetgen-2.5.2-2.fc34.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.5.2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/bin/run_network extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/bin/run_network original debug info size: 7432kB, size after compression: 5652kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 1829 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.GuaKas + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Models2 ~/build/BUILD/bionetgen-2.5.2 + cd bionetgen-2.5.2 + pushd bionetgen-BioNetGen-2.5.2/bng2/Models2 + install -pm 755 ../Network3/src/run_network -D ./bin/run_network_x86_64-linux + install -pm 755 ../Network3/src/run_network -D ../bin/run_network_x86_64-linux Running some tests ... + echo 'Running some tests ...' + ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl BioNetGen version 2.5.1 Reading from file CaOscillate_Func.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Func ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Func.net. CPU TIME: generate_network 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net. Wrote network in net format to ./CaOscillate_Func.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200 [simulation PID is: 13469] run_network 3.0 Read 17 parameters from ./CaOscillate_Func.net Read 4 species from ./CaOscillate_Func.net Read 4 group(s) from ./CaOscillate_Func.net Read 4 function(s) from ./CaOscillate_Func.net Read 8 reaction(s) from ./CaOscillate_Func.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 717 850 0.20 741 879 0.30 765 904 0.40 790 930 0.50 814 960 0.60 838 985 0.70 863 1015 0.80 887 1040 0.90 912 1067 1.00 936 1099 1.10 961 1129 1.20 993 1171 1.30 1025 1207 1.40 1063 1260 1.50 1105 1310 1.60 1152 1368 1.70 1208 1436 1.80 1281 1523 1.90 1354 1611 2.00 1434 1704 2.10 1509 1792 2.20 1584 1871 2.30 1638 1932 2.40 1688 1984 2.50 1741 2047 2.60 1880 2222 2.70 2351 2772 2.80 2453 2892 2.90 2501 2946 3.00 2552 3007 3.10 2616 3078 3.20 2672 3143 3.30 2730 3208 3.40 2789 3271 3.50 2847 3333 3.60 2903 3395 3.70 2956 3464 3.80 3084 3620 3.90 3240 3799 4.00 3350 3920 4.10 3415 3990 4.20 3465 4046 4.30 3516 4103 4.40 3563 4151 4.50 3599 4196 4.60 3644 4249 4.70 3690 4304 4.80 3746 4371 4.90 3802 4441 5.00 3856 4498 5.10 3895 4545 5.20 3929 4585 5.30 3961 4618 5.40 3984 4642 5.50 4007 4671 5.60 4031 4697 5.70 4054 4722 5.80 4075 4750 5.90 4095 4773 6.00 4115 4795 6.10 4136 4821 6.20 4155 4841 6.30 4168 4854 6.40 4181 4872 6.50 4194 4885 6.60 4207 4898 6.70 4220 4911 6.80 4231 4927 6.90 4239 4935 7.00 4248 4945 7.10 4257 4954 7.20 4265 4963 7.30 4274 4972 7.40 4283 4982 7.50 4292 4996 7.60 4300 5004 7.70 4309 5015 7.80 4318 5024 7.90 4329 5044 8.00 4341 5059 8.10 4352 5077 8.20 4364 5090 8.30 4377 5108 8.40 4396 5135 8.50 4423 5174 8.60 4453 5207 8.70 4492 5256 8.80 4549 5327 8.90 4658 5465 9.00 4979 5847 9.10 5283 6181 9.20 5392 6300 9.30 5431 6345 9.40 5447 6363 9.50 5460 6376 9.60 5473 6389 9.70 5485 6405 9.80 5498 6418 9.90 5511 6431 10.00 5524 6445 10.10 5537 6458 10.20 5549 6475 10.30 5562 6489 10.40 5575 6502 10.50 5588 6516 10.60 5601 6534 10.70 5613 6547 10.80 5626 6562 10.90 5639 6575 11.00 5652 6590 11.10 5664 6608 11.20 5677 6621 11.30 5690 6638 11.40 5708 6656 11.50 5725 6674 11.60 5742 6696 11.70 5759 6714 11.80 5777 6733 11.90 5794 6755 12.00 5811 6773 12.10 5829 6791 12.20 5846 6809 12.30 5863 6832 12.40 5880 6851 12.50 5898 6871 12.60 5915 6894 12.70 5934 6915 12.80 5958 6940 12.90 5981 6969 13.00 6004 6994 13.10 6031 7026 13.20 6063 7065 13.30 6095 7100 13.40 6129 7145 13.50 6172 7196 13.60 6218 7252 13.70 6272 7316 13.80 6345 7398 13.90 6417 7485 14.00 6498 7583 14.10 6573 7669 14.20 6648 7748 14.30 6704 7810 14.40 6754 7867 14.50 6806 7929 14.60 6933 8086 14.70 7392 8627 14.80 7505 8764 14.90 7557 8822 15.00 7606 8884 15.10 7667 8954 15.20 7727 9021 15.30 7788 9088 15.40 7849 9153 15.50 7910 9218 15.60 7968 9281 15.70 8020 9346 15.80 8144 9498 15.90 8284 9667 16.00 8401 9791 16.10 8469 9868 16.20 8525 9928 16.30 8581 9988 16.40 8629 10037 16.50 8666 10082 16.60 8711 10136 16.70 8761 10188 16.80 8819 10257 16.90 8879 10326 17.00 8937 10391 17.10 8976 10441 17.20 9012 10480 17.30 9045 10518 17.40 9069 10542 17.50 9092 10572 17.60 9115 10597 17.70 9139 10623 17.80 9160 10651 17.90 9180 10674 18.00 9200 10696 18.10 9221 10722 18.20 9240 10742 18.30 9251 10758 18.40 9262 10769 18.50 9273 10785 18.60 9284 10796 18.70 9295 10807 18.80 9306 10818 18.90 9316 10828 19.00 9327 10839 19.10 9338 10854 19.20 9349 10865 19.30 9360 10876 19.40 9371 10887 19.50 9382 10898 19.60 9393 10913 19.70 9404 10924 19.80 9415 10935 19.90 9426 10946 20.00 9437 10959 Time course of concentrations written to file ./CaOscillate_Func.cdat. Time course of groups written to file ./CaOscillate_Func.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Func.cdat CPU TIME: simulate 0.03 s. Finished processing file CaOscillate_Func.bngl. CPU TIME: total 0.05 s. BioNetGen version 2.5.1 Reading from file CaOscillate_Sat.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Sat ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Sat.net. CPU TIME: generate_network 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net. Wrote network in net format to ./CaOscillate_Sat.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200 [simulation PID is: 13471] run_network 3.0 Read 17 parameters from ./CaOscillate_Sat.net Read 4 species from ./CaOscillate_Sat.net Read 4 group(s) from ./CaOscillate_Sat.net Read 0 function(s) from ./CaOscillate_Sat.net Read 8 reaction(s) from ./CaOscillate_Sat.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 719 851 0.20 753 889 0.30 788 924 0.40 819 960 0.50 842 984 0.60 865 1008 0.70 888 1036 0.80 911 1060 0.90 934 1091 1.00 957 1116 1.10 983 1146 1.20 1014 1184 1.30 1046 1218 1.40 1079 1259 1.50 1122 1310 1.60 1169 1362 1.70 1226 1428 1.80 1296 1512 1.90 1370 1605 2.00 1450 1698 2.10 1526 1787 2.20 1601 1866 2.30 1655 1927 2.40 1705 1979 2.50 1759 2043 2.60 1897 2217 2.70 2371 2794 2.80 2470 2900 2.90 2528 2962 3.00 2575 3020 3.10 2628 3083 3.20 2680 3143 3.30 2732 3204 3.40 2784 3261 3.50 2836 3315 3.60 2888 3373 3.70 2941 3438 3.80 3067 3595 3.90 3224 3777 4.00 3337 3901 4.10 3402 3971 4.20 3456 4029 4.30 3510 4087 4.40 3558 4140 4.50 3594 4180 4.60 3640 4236 4.70 3688 4292 4.80 3746 4359 4.90 3805 4430 5.00 3862 4493 5.10 3903 4540 5.20 3941 4580 5.30 3975 4619 5.40 4000 4645 5.50 4025 4675 5.60 4051 4705 5.70 4076 4735 5.80 4099 4760 5.90 4119 4782 6.00 4140 4808 6.10 4162 4831 6.20 4181 4855 6.30 4192 4871 6.40 4204 4883 6.50 4216 4896 6.60 4228 4908 6.70 4240 4920 6.80 4252 4936 6.90 4264 4948 7.00 4276 4960 7.10 4288 4972 7.20 4299 4983 7.30 4311 4999 7.40 4323 5011 7.50 4335 5023 7.60 4347 5035 7.70 4359 5047 7.80 4371 5063 7.90 4383 5075 8.00 4395 5087 8.10 4407 5099 8.20 4419 5113 8.30 4434 5143 8.40 4450 5161 8.50 4471 5189 8.60 4498 5230 8.70 4533 5272 8.80 4592 5345 8.90 4696 5473 9.00 5025 5862 9.10 5314 6183 9.20 5422 6298 9.30 5462 6344 9.40 5475 6364 9.50 5485 6378 9.60 5494 6387 9.70 5503 6402 9.80 5513 6412 9.90 5522 6423 10.00 5532 6433 10.10 5541 6444 10.20 5551 6454 10.30 5562 6471 10.40 5575 6485 10.50 5588 6498 10.60 5600 6511 10.70 5613 6525 10.80 5626 6544 10.90 5638 6558 11.00 5651 6571 11.10 5664 6586 11.20 5677 6605 11.30 5691 6621 11.40 5708 6639 11.50 5725 6661 11.60 5742 6678 11.70 5760 6697 11.80 5777 6715 11.90 5794 6737 12.00 5811 6755 12.10 5828 6773 12.20 5845 6795 12.30 5862 6813 12.40 5880 6833 12.50 5897 6852 12.60 5914 6875 12.70 5934 6897 12.80 5957 6921 12.90 5980 6950 13.00 6003 6975 13.10 6031 7008 13.20 6063 7047 13.30 6094 7086 13.40 6128 7126 13.50 6171 7177 13.60 6218 7234 13.70 6273 7301 13.80 6345 7381 13.90 6417 7472 14.00 6501 7568 14.10 6578 7655 14.20 6655 7740 14.30 6708 7800 14.40 6759 7858 14.50 6813 7917 14.60 6940 8079 14.70 7388 8611 14.80 7506 8741 14.90 7559 8800 15.00 7608 8861 15.10 7668 8930 15.20 7728 8997 15.30 7788 9063 15.40 7848 9127 15.50 7908 9191 15.60 7965 9253 15.70 8017 9318 15.80 8141 9471 15.90 8281 9636 16.00 8398 9764 16.10 8466 9837 16.20 8522 9897 16.30 8578 9957 16.40 8626 10010 16.50 8664 10052 16.60 8708 10105 16.70 8758 10161 16.80 8816 10230 16.90 8876 10295 17.00 8934 10360 17.10 8976 10408 17.20 9014 10452 17.30 9048 10487 17.40 9073 10516 17.50 9099 10543 17.60 9124 10576 17.70 9149 10602 17.80 9172 10627 17.90 9192 10653 18.00 9213 10675 18.10 9234 10697 18.20 9253 10721 18.30 9265 10738 18.40 9275 10748 18.50 9285 10759 18.60 9295 10769 18.70 9305 10783 18.80 9315 10793 18.90 9325 10803 19.00 9335 10813 19.10 9345 10823 19.20 9354 10832 19.30 9364 10846 19.40 9374 10856 19.50 9384 10868 19.60 9394 10878 19.70 9404 10889 19.80 9414 10901 19.90 9424 10919 20.00 9434 10929 Time course of concentrations written to file ./CaOscillate_Sat.cdat. Time course of groups written to file ./CaOscillate_Sat.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Sat.cdat CPU TIME: simulate 0.03 s. Finished processing file CaOscillate_Sat.bngl. CPU TIME: total 0.05 s. BioNetGen version 2.5.1 Reading from file catalysis.bngl (level 0) CPU TIME: version 0.00 s. Read 17 parameters. Read 1 compartments. Read 5 molecule types. Read 5 species. Read 4 reaction rule(s). Read 4 energy patterns(s). Read 6 observable(s). ACTION: generate_network( catalysis ) Iteration 0: 5 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 2 rxns 1.00e-02 CPU s Iteration 2: 9 species 6 rxns 0.00e+00 CPU s Iteration 3: 10 species 10 rxns 1.00e-02 CPU s Iteration 4: 10 species 12 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 4 reactions 2.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 2: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 12 reactions 2.00e-02 CPU s 1.67e-03 CPU s/rxn Wrote network in net format to ./catalysis.net. CPU TIME: generate_network 0.03 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./catalysis.net. Wrote network in net format to ./catalysis.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120 [simulation PID is: 13473] run_network 3.0 Read 30 parameters from ./catalysis.net @C::$ATP() is a fixed (boundaryCondition) variable @C::$ADP() is a fixed (boundaryCondition) variable Read 10 species from ./catalysis.net Read 6 group(s) from ./catalysis.net Read 0 function(s) from ./catalysis.net Read 12 reaction(s) from ./catalysis.net 12 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./catalysis.cdat. Time course of groups written to file ./catalysis.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./catalysis.cdat CPU TIME: simulate 0.00 s. Finished processing file catalysis.bngl. CPU TIME: total 0.06 s. BioNetGen version 2.5.1 Reading from file egfr_net.bngl (level 0) Read 48 parameters. Read 5 molecule types. Read 6 species. Read 23 reaction rule(s). Read 15 observable(s). ACTION: generate_network( egfr_net ) Iteration 0: 6 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 0.00e+00 CPU s Iteration 2: 8 species 5 rxns 1.00e-02 CPU s Iteration 3: 10 species 8 rxns 1.00e-02 CPU s Iteration 4: 19 species 21 rxns 2.00e-02 CPU s Iteration 5: 37 species 76 rxns 1.00e-01 CPU s Iteration 6: 69 species 213 rxns 2.20e-01 CPU s Iteration 7: 131 species 494 rxns 5.10e-01 CPU s Iteration 8: 295 species 1260 rxns 1.56e+00 CPU s Iteration 9: 356 species 3088 rxns 4.10e+00 CPU s Iteration 10: 356 species 3749 rxns 1.86e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 1.10e-01 CPU s 2.29e-03 CPU s/rxn Rule 2: 600 reactions 2.05e+00 CPU s 3.42e-03 CPU s/rxn Rule 3: 144 reactions 2.50e-01 CPU s 1.74e-03 CPU s/rxn Rule 4: 96 reactions 1.60e-01 CPU s 1.67e-03 CPU s/rxn Rule 5: 156 reactions 2.30e-01 CPU s 1.47e-03 CPU s/rxn Rule 6: 104 reactions 1.30e-01 CPU s 1.25e-03 CPU s/rxn Rule 7: 96 reactions 1.80e-01 CPU s 1.88e-03 CPU s/rxn Rule 8: 104 reactions 1.60e-01 CPU s 1.54e-03 CPU s/rxn Rule 9: 312 reactions 5.80e-01 CPU s 1.86e-03 CPU s/rxn Rule 10: 312 reactions 6.10e-01 CPU s 1.96e-03 CPU s/rxn Rule 11: 312 reactions 6.20e-01 CPU s 1.99e-03 CPU s/rxn Rule 12: 208 reactions 3.70e-01 CPU s 1.78e-03 CPU s/rxn Rule 13: 208 reactions 3.80e-01 CPU s 1.83e-03 CPU s/rxn Rule 14: 208 reactions 4.90e-01 CPU s 2.36e-03 CPU s/rxn Rule 15: 208 reactions 5.10e-01 CPU s 2.45e-03 CPU s/rxn Rule 16: 208 reactions 4.30e-01 CPU s 2.07e-03 CPU s/rxn Rule 17: 208 reactions 5.10e-01 CPU s 2.45e-03 CPU s/rxn Rule 18: 208 reactions 4.80e-01 CPU s 2.31e-03 CPU s/rxn Rule 19: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 20: 2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 21: 1 reactions 2.00e-02 CPU s 2.00e-02 CPU s/rxn Rule 22: 2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 23: 2 reactions 4.00e-02 CPU s 2.00e-02 CPU s/rxn Total : 3749 reactions 8.38e+00 CPU s 2.24e-03 CPU s/rxn Wrote network in net format to ./egfr_net.net. CPU TIME: generate_network 8.53 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net.net. Wrote network in net format to ./egfr_net.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50 [simulation PID is: 13475] run_network 3.0 Read 48 parameters from ./egfr_net.net Read 356 species from ./egfr_net.net Read 15 group(s) from ./egfr_net.net Read 0 function(s) from ./egfr_net.net Read 3749 reaction(s) from ./egfr_net.net 3749 reaction(s) have nonzero rate Initialization took 0.02 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net.cdat. Time course of groups written to file ./egfr_net.gdat. Propagation took 1.00e-01 CPU seconds Program times: 0.12 CPU s 1.00 clock s Updating species concentrations from ./egfr_net.cdat CPU TIME: simulate 0.27 s. Finished processing file egfr_net.bngl. CPU TIME: total 8.86 s. BioNetGen version 2.5.1 Reading from file egfr_net_red.bngl (level 0) Read 48 parameters. Read 7 molecule types. Read 7 species. Read 14 observable(s). Read 26 reaction rule(s). ACTION: generate_network( egfr_net_red ) Iteration 0: 7 species 0 rxns 0.00e+00 CPU s Iteration 1: 11 species 4 rxns 1.00e-02 CPU s Iteration 2: 13 species 10 rxns 1.00e-02 CPU s Iteration 3: 15 species 14 rxns 1.00e-02 CPU s Iteration 4: 20 species 21 rxns 1.00e-02 CPU s Iteration 5: 26 species 39 rxns 3.00e-02 CPU s Iteration 6: 33 species 62 rxns 3.00e-02 CPU s Iteration 7: 38 species 90 rxns 4.00e-02 CPU s Iteration 8: 40 species 115 rxns 3.00e-02 CPU s Iteration 9: 40 species 123 rxns 2.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 12 reactions 5.00e-02 CPU s 4.17e-03 CPU s/rxn Rule 4: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn Rule 6: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 3 reactions 1.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 10: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 11: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 12: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 13: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 14: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 15: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 16: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 17: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 18: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 20: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 21: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 22: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 23: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 24: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 25: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 26: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 123 reactions 1.90e-01 CPU s 1.54e-03 CPU s/rxn Wrote network in net format to ./egfr_net_red.net. CPU TIME: generate_network 0.20 s. Set concentration of species egf(r) to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10 [simulation PID is: 13477] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.01 s. Set concentration of species egf(r) to value egf_tot CPU TIME: setConcentration 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120 [simulation PID is: 13479] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.03 s. Finished processing file egfr_net_red.bngl. CPU TIME: total 0.32 s. BioNetGen version 2.5.1 Reading from file egfr_path.bngl (level 0) Read 48 parameters. Read 18 species. Read 19 reaction rule(s). Read 11 observable(s). ACTION: generate_network( egfr_path ) Iteration 0: 18 species 0 rxns 0.00e+00 CPU s Iteration 1: 18 species 37 rxns 3.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 5: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 11: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 15: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 16: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 18: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 37 reactions 3.00e-02 CPU s 8.11e-04 CPU s/rxn Wrote network in net format to ./egfr_path.net. CPU TIME: generate_network 0.04 s. Set concentration of species EGF() to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10 [simulation PID is: 13481] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.02 s. Set concentration of species EGF() to value EGF_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120 [simulation PID is: 13483] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.03 s. Finished processing file egfr_path.bngl. CPU TIME: total 0.13 s. BioNetGen version 2.5.1 Reading from file energy_example1.bngl (level 0) CPU TIME: version 0.00 s. Read 19 parameters. Read 1 compartments. Read 4 molecule types. Read 4 species. Read 6 energy patterns(s). Read 11 observable(s). Read 3 reaction rule(s). ACTION: generate_network( energy_example1 ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 1.00e-02 CPU s Iteration 2: 10 species 12 rxns 1.00e-02 CPU s Iteration 3: 11 species 21 rxns 1.00e-02 CPU s Iteration 4: 11 species 24 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 2: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 3: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Total : 24 reactions 4.00e-02 CPU s 1.67e-03 CPU s/rxn Wrote network in net format to ./energy_example1.net. CPU TIME: generate_network 0.05 s. Wrote SBML to ./energy_example1_sbml.xml. CPU TIME: writeSBML 0.01 s. Finished processing file energy_example1.bngl. CPU TIME: total 0.08 s. BioNetGen version 2.5.1 Reading from file fceri_ji.bngl (level 0) Read 26 parameters. Read 4 species. Adding pY as allowed state of component b of molecule Rec Adding pY as allowed state of component g of molecule Rec Adding pY as allowed state of component l of molecule Syk Adding pY as allowed state of component a of molecule Syk Read 19 reaction rule(s). Read 10 observable(s). ACTION: generate_network( fceri_ji ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 1.00e-02 CPU s Iteration 2: 9 species 8 rxns 1.00e-02 CPU s Iteration 3: 12 species 20 rxns 2.00e-02 CPU s Iteration 4: 22 species 36 rxns 3.00e-02 CPU s Iteration 5: 43 species 100 rxns 8.00e-02 CPU s Iteration 6: 78 species 255 rxns 2.00e-01 CPU s Iteration 7: 139 species 586 rxns 4.40e-01 CPU s Iteration 8: 199 species 1190 rxns 8.70e-01 CPU s Iteration 9: 303 species 1841 rxns 1.09e+00 CPU s Iteration 10: 354 species 3143 rxns 1.88e+00 CPU s Iteration 11: 354 species 3680 rxns 8.10e-01 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 1.10e-01 CPU s 2.29e-03 CPU s/rxn Rule 2: 1152 reactions 1.56e+00 CPU s 1.35e-03 CPU s/rxn Rule 3: 312 reactions 4.40e-01 CPU s 1.41e-03 CPU s/rxn Rule 4: 36 reactions 1.10e-01 CPU s 3.06e-03 CPU s/rxn Rule 5: 24 reactions 7.00e-02 CPU s 2.92e-03 CPU s/rxn Rule 6: 312 reactions 4.40e-01 CPU s 1.41e-03 CPU s/rxn Rule 7: 36 reactions 8.00e-02 CPU s 2.22e-03 CPU s/rxn Rule 8: 24 reactions 8.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 9: 832 reactions 1.14e+00 CPU s 1.37e-03 CPU s/rxn Rule 10: 48 reactions 1.30e-01 CPU s 2.71e-03 CPU s/rxn Rule 11: 48 reactions 9.00e-02 CPU s 1.88e-03 CPU s/rxn Rule 12: 64 reactions 2.00e-01 CPU s 3.12e-03 CPU s/rxn Rule 13: 64 reactions 1.50e-01 CPU s 2.34e-03 CPU s/rxn Rule 14: 156 reactions 1.70e-01 CPU s 1.09e-03 CPU s/rxn Rule 15: 104 reactions 1.20e-01 CPU s 1.15e-03 CPU s/rxn Rule 16: 208 reactions 2.80e-01 CPU s 1.35e-03 CPU s/rxn Rule 17: 208 reactions 2.50e-01 CPU s 1.20e-03 CPU s/rxn Rule 18: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 3680 reactions 5.43e+00 CPU s 1.48e-03 CPU s/rxn Wrote network in net format to ./fceri_ji.net. CPU TIME: generate_network 5.55 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./fceri_ji.net. Wrote network in net format to ./fceri_ji.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10 [simulation PID is: 13485] run_network 3.0 Read 26 parameters from ./fceri_ji.net Read 354 species from ./fceri_ji.net Read 10 group(s) from ./fceri_ji.net Read 0 function(s) from ./fceri_ji.net Read 3680 reaction(s) from ./fceri_ji.net Removed 600 reactions with zero rate 3080 reaction(s) have nonzero rate Initialization took 0.02 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./fceri_ji.cdat. Time course of groups written to file ./fceri_ji.gdat. Propagation took 8.30e-01 CPU seconds Program times: 0.85 CPU s 1.00 clock s Updating species concentrations from ./fceri_ji.cdat CPU TIME: simulate 0.98 s. Finished processing file fceri_ji.bngl. CPU TIME: total 6.57 s. BioNetGen version 2.5.1 Reading from file test_continue.bngl (level 0) Read 19 parameters. Read 5 molecule types. Read 4 species. Read 6 observable(s). Read 6 reaction rule(s). ACTION: generate_network( test_continue ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 0.00e+00 CPU s Iteration 2: 7 species 5 rxns 1.00e-02 CPU s Iteration 3: 8 species 7 rxns 0.00e+00 CPU s Iteration 4: 12 species 12 rxns 1.00e-02 CPU s Iteration 5: 17 species 30 rxns 3.00e-02 CPU s Iteration 6: 22 species 59 rxns 4.00e-02 CPU s Iteration 7: 22 species 76 rxns 3.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 20 reactions 5.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 3: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 4: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 5: 24 reactions 3.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 6: 14 reactions 2.00e-02 CPU s 1.43e-03 CPU s/rxn Total : 76 reactions 1.20e-01 CPU s 1.58e-03 CPU s/rxn Wrote network in net format to ./test_continue.net. CPU TIME: generate_network 0.12 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 13487] run_network 3.0 Read 19 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.01 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 13489] run_network 3.0 Read 20 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.02 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 13491] run_network 3.0 Read 21 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.02 s. Reset species concentrations to "DEFAULT" saved values. CPU TIME: resetConcentrations 0.00 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.01 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 1333557947 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 13493] run_network 3.0 Read 21 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 71213 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.02 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 1291070796 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 13495] run_network 3.0 Read 22 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 128910 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.05 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.2/bionetgen-BioNetGen-2.5.2/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 1446581786 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 13497] run_network 3.0 Read 23 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 106584 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.05 s. Finished processing file test_continue.bngl. CPU TIME: total 0.33 s. Tests finished. + echo 'Tests finished.' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bionetgen-2.5.2-2.fc34.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.wpnCTb + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.2 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.2/README.md /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.2/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.2/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.2/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/doc/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2ZFKmD + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.2 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/licenses/bionetgen + cp -pr bionetgen-BioNetGen-2.5.2/LICENSE /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64/usr/share/licenses/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Provides: bionetgen = 2.5.2-2.fc34 bionetgen(x86-64) = 2.5.2-2.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.5.2-2.fc34.noarch Provides: bionetgen-perl = 2.5.2-2.fc34 bundled(XML-TreePP) = 0.41 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.5.2-2.fc34.x86_64 Provides: bionetgen-debugsource = 2.5.2-2.fc34 bionetgen-debugsource(x86-64) = 2.5.2-2.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.5.2-2.fc34.x86_64 Provides: bionetgen-debuginfo = 2.5.2-2.fc34 bionetgen-debuginfo(x86-64) = 2.5.2-2.fc34 debuginfo(build-id) = 57fe64de896d12f9825ffc1a4f6cf824f1fa8d98 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(x86-64) = 2.5.2-2.fc34 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 Wrote: /builddir/build/RPMS/bionetgen-perl-2.5.2-2.fc34.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.5.2-2.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.5.2-2.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bionetgen-2.5.2-2.fc34.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.j1VWuf + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.5.2-2.fc34.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bionetgen-2.5.2-2.fc34.src.rpm Finish: build phase for bionetgen-2.5.2-2.fc34.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-34-x86_64-1614002983.276891/root/var/log/dnf.rpm.log /var/lib/mock/fedora-34-x86_64-1614002983.276891/root/var/log/dnf.librepo.log /var/lib/mock/fedora-34-x86_64-1614002983.276891/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.5.2-2.fc34.src.rpm) Config(child) 2 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run INFO: unmounting tmpfs.