Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1679457525.677502/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.dfswswpn:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.dfswswpn:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3719e4bdc2a2427490df49149b30e979', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1679457525.677502/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.dfswswpn:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658275200 Wrote: /builddir/build/SRPMS/bout++-4.4.2-5.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1679457525.677502/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.dfswswpn:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.dfswswpn:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0b367c6c512e426fac740159896ed8d0', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1679457525.677502/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.dfswswpn:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658275200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.F1pcP2 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf BOUT++-v4.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v4.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BOUT++-v4.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -e /boututils/d -e /boutdata/d -i make.config.in + rm -rf externalpackages/mpark.variant/ + mkdir -p externalpackages/mpark.variant/include/ + rm -rf tools/pylib/boutdata + rm -rf tools/pylib/boututils ++ find -L tools/pylib/ -type f ++ grep -v _boutcore_build + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/zoidberg.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_zoidberg.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_rzline.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_poloidal_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_fieldtracer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_field.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/rzline.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/progress.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/poloidal_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/plot.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/fieldtracer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/field.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/boundary.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/rms.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/bout_runners/bout_runners.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/bout_runners/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/bout_runners/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/.gitignore + autoupdate configure.ac:178: warning: The preprocessor macro `STDC_HEADERS' is obsolete. Except in unusual embedded environments, you can safely include all ISO C90 headers unconditionally. + touch build-aux/config.rpath + autoreconf -vif autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force autoreconf: configure.ac: tracing configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: /usr/bin/autoconf --force configure.ac:178: warning: The preprocessor macro `STDC_HEADERS' is obsolete. configure.ac:178: Except in unusual embedded environments, you can safely include all configure.ac:178: ISO C90 headers unconditionally. configure.ac:636: warning: The macro `AC_HAVE_LIBRARY' is obsolete. configure.ac:636: You should run autoupdate. ./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from... m4/ax_lib_hdf5.m4:93: AX_LIB_HDF5 is expanded from... configure.ac:636: the top level configure.ac:649: warning: The macro `AC_HAVE_LIBRARY' is obsolete. configure.ac:649: You should run autoupdate. ./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from... m4/ax_lib_parallelhdf5.m4:93: AX_LIB_PARALLELHDF5 is expanded from... configure.ac:649: the top level autoreconf: configure.ac: not using Autoheader autoreconf: configure.ac: not using Automake autoreconf: 'build-aux/install-sh' is updated autoreconf: 'build-aux/config.sub' is updated autoreconf: 'build-aux/config.guess' is updated autoreconf: Leaving directory '.' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.1DoF8q + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v4.4.2 + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + for mpi in mpich openmpi + mkdir build_mpich + cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac configure.ac~ configure~ examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_mpich + for mpi in mpich openmpi + mkdir build_openmpi + cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac configure.ac~ configure~ examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_openmpi + for mpi in mpich openmpi + pushd build_mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2 ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-03-22 04:00:25.040590291 +0000 +++ ./configure 2023-03-22 04:00:25.202590834 +0000 @@ -1864,7 +1864,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/mpich/lib --bindir=/usr/lib64/mpich/bin --sbindir=/usr/lib64/mpich/sbin --includedir=/usr/include/mpich-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials configure: WARNING: unrecognized options: --disable-dependency-tracking checking for x86_64-redhat-linux-gnu-mpic++... no checking for x86_64-redhat-linux-gnu-mpicxx... no checking for x86_64-redhat-linux-gnu-mpiCC... no checking for x86_64-redhat-linux-gnu-sxmpic++... no checking for x86_64-redhat-linux-gnu-hcp... no checking for x86_64-redhat-linux-gnu-mpxlC_r... no checking for x86_64-redhat-linux-gnu-mpxlC... no checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no checking for x86_64-redhat-linux-gnu-mpixlcxx... no checking for x86_64-redhat-linux-gnu-mpg++... no checking for x86_64-redhat-linux-gnu-mpc++... no checking for x86_64-redhat-linux-gnu-mpCC... no checking for x86_64-redhat-linux-gnu-cmpic++... no checking for x86_64-redhat-linux-gnu-mpiFCC... no checking for x86_64-redhat-linux-gnu-CCicpc... no checking for x86_64-redhat-linux-gnu-pgCC... no checking for x86_64-redhat-linux-gnu-pathCC... no checking for x86_64-redhat-linux-gnu-sxc++... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for x86_64-redhat-linux-gnu-bgxlC_r... no checking for x86_64-redhat-linux-gnu-bgxlC... no checking for x86_64-redhat-linux-gnu-openCC... no checking for x86_64-redhat-linux-gnu-sunCC... no checking for x86_64-redhat-linux-gnu-crayCC... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for mpic++... mpic++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether mpic++ accepts -g... yes checking for mpic++ option to enable C++11 features... none needed checking for function MPI_Init... yes checking for mpi.h... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c checking for gmake... gmake checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking whether mpic++ supports C++11 features by default... yes checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking does C++ compiler support __PRETTY_FUNCTION__... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether to build with code coverage support... no checking whether C++ compiler accepts -Werror=unknown-warning-option... no checking whether C++ compiler accepts -we10006,10148... no checking whether C++ compiler accepts -Wall... yes checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnull-dereference... yes checking whether C++ compiler accepts -Wno-cast-function-type... yes configure: Enabling default optimisations checking whether C++ compiler accepts -O2... yes configure: Run-time checking enabled configure: -> Level 2 (Basic checking + stack tracing) configure: Segmentation fault handling enabled configure: Output coloring enabled configure: Field name tracking disabled configure: Signaling floating point exceptions disabled checking for addr2line... yes checking for popen... yes checking for backtrace... yes checking for execinfo.h... yes checking for dlfcn.h... yes checking for library containing dladdr... none required configure: Native backtrace enabled ./configure: line 7057: git: command not found checking for fftw-wisdom... /usr/bin/fftw-wisdom checking for fftw3.h... yes checking for libfftw3... yes checking for ncxx4-config... /usr/bin/ncxx4-config configure: -> NetCDF-4 support enabled configure: Parallel-NetCDF support disabled checking for gawk... gawk checking for x86_64-redhat-linux-gnu-gcc... mpicc checking whether the compiler supports GNU C... yes checking whether mpicc accepts -g... yes checking for mpicc option to enable C11 features... none needed checking for h5cc... /usr/bin/h5cc checking for HDF5 type... serial checking for HDF5 libraries... yes (version 1.12.1) checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for main in -lhdf5_hl... yes configure: Found HDF5 checking how to run the C++ preprocessor... mpic++ -E configure: Parallel HDF5 support disabled configure: Supported file formats: netCDF HDF5 checking for libblas... no checking for liblapack... no checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes configure: Using PETSC_DIR=, PETSC_ARCH= checking for //conf... no checking for //lib/petsc/conf... no checking for PETSc >= 3.4.0 ... yes checking PETSc has SUNDIALS support... no checking for SUNDIALS config header... yes checking for SUNDIALS minor version... ok configure: Searching for SUNDIALS IDA library checking for sundials-config... no configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway checking if we can compile with SUNDIALS IDA... yes configure: Using SUNDIALS IDA solver configure: => IDA solver enabled configure: Searching for SUNDIALS CVODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway checking if we can compile with SUNDIALS CVODE... yes configure: Using SUNDIALS CVODE solver configure: => CVODE solver enabled configure: Searching for SUNDIALS ARKODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway checking if we can compile with SUNDIALS ARKODE... yes configure: Using SUNDIALS ARKODE solver configure: => ARKODE solver enabled configure: Scorep support disabled checking for mpark.variant... yes checking for uuid/uuid.h... no configure: PVODE being built without OpenMP support configure: Building PVODE configure: Successfully built PVODE configure: Installing PVODE into BOUT++ sourcetree checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib64 checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyPreferredLanguages... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: Enabling language support with gettext gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/locale' Building language: de Building language: es Building language: fr Building language: zh_CN Building language: zh_TW gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/locale' configure: creating ./config.status config.status: creating make.config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: creating ./config.status config.status: creating make.config config.status: creating bin/bout-config config.status: creating src/makefile config.status: creating tools/pylib/boutconfig/__init__.py config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: ------------------------- configure: Configuration summary configure: ------------------------- configure: PETSc support : yes (has SUNDIALS: no) configure: SLEPc support : no configure: IDA support : yes configure: CVODE support : yes configure: ARKODE support : yes configure: FFTW support : yes configure: NetCDF support : yes configure: Parallel-NetCDF support : no configure: HDF5 support : yes (parallel: no) configure: MUMPS support : no configure: Lapack support : no configure: Scorep support : no configure: OpenMP support : no (schedule: ) configure: Natural language support: yes (path: ${datarootdir}/locale) configure: System UUID generator : no configure: configure: ------------------------------- configure: Data analysis configuration configure: ------------------------------- configure: configure: === IDL === configure: configure: Make sure that the tools/idllib directory is in your IDL_PATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/idllib:'':$IDL_PATH configure: configure: === Python === configure: configure: Make sure that the tools/pylib directory is in your PYTHONPATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/:$PYTHONPATH configure: configure: *** Now run 'gmake' to compile BOUT++ *** + sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config + sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config + sed -e 's/\\#/#/g' -i make.config + cat make.config # configuration file for BOUT++ # September 2008: Converted to use autoconf. Can be manually edited # for the (very) rare occasions when autoconf fails # extra compilation flags: # -DCHECK=lvl Enables a host of additional checks on each operation # such as uninitialised data if lvl is > 0. -DCHECK=3 # enables all tests, while -DCHECK=0 disables them. # Helps when debugging # -DTRACK Keeps track of variable names. # Enables more useful error messages # for SSE2: -msse2 -mfpmath=sse # # This must also specify one or more file formats # -DPDBF PDB format (need to include pdb_format.cxx) # -DNCDF NetCDF format (nc_format.cxx) # PETSc config variables need to be first, else they may clobber other # options (e.g. CXX, CXXFLAGS) PETSC_DIR ?= PETSC_ARCH ?= SLEPC_DIR ?= SLEPC_ARCH ?= # These lines can be replaced in "make install" to point to install directories # They are used in the CXXFLAGS variable below rather than hard-coding the directories BOUT_INCLUDE_PATH=$(BOUT_TOP)/include BOUT_LIB_PATH=$(BOUT_TOP)/lib BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config SONAME=4.4.0 prefix = /usr exec_prefix = /usr datarootdir = /usr/share # This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time BOUT_LOCALE_PATH=${datarootdir}/locale # Created this variable so that a user won't overwrite the CXXFLAGS variable # on the command line, just add to this one BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.4.2\"" -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH) #Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to #avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of = BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)" # Specify the MPI C++ compiler in CXX CXX = mpic++ CC = $(CXX) AR = ar ARFLAGS = cruU RANLIB = ranlib MKDIR = /usr/bin/mkdir -p #################################################################### # Do not need to alter anything below #################################################################### LD = $(CXX) LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes LIBS = -lm CPPFLAGS = #################################################################### # Extra (optional) source files, includes and libs # NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx) # and a file format (nc_format.cxx or pdb_format.cxx) #################################################################### EXTRA_INCS = $(CPPFLAGS) -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc EXTRA_LIBS = $(LIBS) -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/mpich/lib -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -L$(BOUT_LIB_PATH) -lpvode -lpvpre PRECON_SOURCE = BOUT_VERSION = 4.4.2 #################################################################### # These are used for compiling physics modules using BOUT++ library #################################################################### # Files that are needed by configure and should be dependencies for 'all' OBJ = $(SOURCEC:%.cxx=%.o) ifndef RELEASE LIB_A = $(BOUT_LIB_PATH)/libbout++.a LIB_SO = $(BOUT_LIB_PATH)/libbout++.so LIB = $(BOUT_LIB_PATH)/libbout++.so endif MPARK_VARIANT_INCLUDE_PATH= BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) BOUT_LIBS = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS) CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null) # This will set a default if no TARGET is provided TARGET ?= $(SOURCEC:%.cxx=%) #################################################################### # Definining stuff for recursive make #################################################################### # Phony targets since they are directory names .PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen ifneq ("$(TARGET)","libfast") all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET) else all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS) endif libfast: $(BOUT_CONFIG_FILE) $(DIRS) #################################################################### # Recursively run make through subdirs #################################################################### ifeq ("$(TARGET)" , "lib") $(DIRS): # make $@ slowly using the old method where parallel builds can cause # race conditions that @$(MAKE) -s --no-print-directory TARGET=lib -C $@ all else ifeq ("$(TARGET)","libfast") $(DIRS): # make $@ using the libfast method, where all .o files # are only created in the end @$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET) else MODULE_DIR?=$(shell pwd) $(DIRS): # MODULE_DIR: pass the module directory, where the libraries should be # created. # SUB_NAME is used for creating a library with the expected name. # first a potential trailing slash is removed, and after that the # directory name is extracted. This allows to e.g. specify a directory # as fuu/bar/ and still get an archive named bar.a # The # probably doesn't need to be escaped as everything in the # recipy is passed to the shell, even lines starting with # @$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell f=$@ ; g=$${f%/} ; echo $${g##*/}) TARGET=sub -C $@ endif endif # Create 'lib' and 'include' incase they don't exist $(BOUT_TOP)/include $(BOUT_TOP)/lib: $(MKDIR) $@ #################################################################### # Install header files and libraries #################################################################### INSTALL = /usr/bin/install -c INSTALL_PROGRAM = ${INSTALL} INSTALL_DATA = ${INSTALL} -m 644 INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/mpich-x86_64/bout++/ # A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo" MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo) install: libfast $(PRE_INSTALL) # Pre-install commands follow. $(NORMAL_INSTALL) # Normal commands follow. $(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert} $(MKDIR) $(DESTDIR)/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib} $(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH) ifeq ("", "yes") $(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark $(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark endif $(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/ $(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/ $(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/ $(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/ ifneq ("x", "x") $(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/mpich/lib endif ifneq ("$(RM) -f $(BOUT_LIB_PATH)/libbout++.ax", "x") $(INSTALL_PROGRAM) lib/libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_PROGRAM) lib/libpvode.so.* $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_PROGRAM) lib/libpvpre.so.* $(DESTDIR)/usr/lib64/mpich/lib rm -f $(DESTDIR)/usr/lib64/mpich/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.so ln -s libpvode.so.1.0.0 $(DESTDIR)/usr/lib64/mpich/lib/libpvode.so ln -s libpvpre.so.1.0.0 $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.so endif $(INSTALL_PROGRAM) bin/bout-config $(DESTDIR)/usr/lib64/mpich/bin $(INSTALL_PROGRAM) bin/bout-log-color $(DESTDIR)/usr/lib64/mpich/bin $(INSTALL_DATA) tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) make.config $(INSTALL_INCLUDE_PATH) for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done $(POST_INSTALL) # Post-install commands follow. @# Modify paths in the bout-config script sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config endif @# Modify paths in the make.config file sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config endif # Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed sed -i '26 i RELEASED = yes' $(INSTALL_INCLUDE_PATH)/make.config uninstall: $(PRE_UNINSTALL) # Pre-uninstall commands follow. $(NORMAL_UNINSTALL) # Normal commands follow. $(RM) $(INSTALL_INCLUDE_PATH)/make.config $(RM) -r $(DESTDIR)/usr/share/bout++/idllib/ $(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-config $(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-log-color $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.a $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvode.a $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.a $(RM) -r $(DESTDIR)/usr/include/mpich-x86_64/bout++/ $(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo $(POST_UNINSTALL) # Post-uninstall commands follow. #################################################################### # Builds the library with $(OBJ) which is defined from the SOURCEC variable #################################################################### # Rules for downloading submodules -include $(BOUT_TOP)/makefile.submodules ifeq ("$(TARGET)", "libfast") libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS) endif ifeq ("$(TARGET)", "lib") lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to libbout++.a" @$(AR) $(ARFLAGS) $(LIB_A) $(OBJ) @$(RANLIB) $(LIB) endif endif ifeq ("$(TARGET)", "sub") LIB=$(MODULE_DIR)/$(SUB_NAME).a sub: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to $(LIB)" @$(AR) $(ARFLAGS) $(LIB) $(OBJ) @$(RANLIB) $(LIB) endif endif runtest: ./runtest ifneq ("$(TARGET)", "sub") ifneq ("$(TARGET)", "libfast") ifneq ("$(TARGET)", "lib") ifneq ("$(TARGET)", "runtest") #################################################################### # Make libbout++.a if it doesn't exist with the checklib target #################################################################### libbout++.a: @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) #################################################################### # Make the target (e.g. gas_compress) #################################################################### # first we remove a trailing slash, if present. Note that currently we # dont support several trailing slashes, as in fuu/bar/// DIRS_=$(DIRS:%/=%) # then we extract the directory name, in case it is a longer path # We are not in a recipe, so # needs to be escaped # $$ is an escaped $ DIRS__=$(shell for f in $(DIRS_) ; do echo $${f##*/};done) # now we can generate a list of libraries SUB_LIBS=$(DIRS__:%=%.a) $(SUB_LIBS):$(DIRS__) $(SOURCEC): checklib $(SOURCEC:%.cxx=%.o): $(LIB) $(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS) @echo " Linking" $(TARGET) @$(LD) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) $(LDFLAGS) checklib: ifneq ("$(CHANGED)foo", "foo") @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) endif endif endif endif endif # Ignore missing requirement files -include .*.mk # If it is a libfast target, track changes to rebuild library if needed # # Further track dependencies using gcc's -M feature: # -MF write the generated dependency rule to a file # -MG assume missing headers will be generated and don't stop with an error # -MM generate dependency rule for prerequisite, skipping system headers # -MP add phony target for each header to prevent errors when header is missing # -MT add a target to the generated dependency # Ignore failure, in case some compiler does not support this %.o: $(BOUT_CONFIG_FILE) %.cxx @echo " Compiling " $(@:.o=.cxx) @$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@ ifeq ("$(TARGET)","libfast") test "$@" = "bout++-time.o" || touch $(BOUT_TOP)/lib/.last.o.file endif #################################################################### # Clean target. Pretty self explanatory. # NOTE: See that double colon (::) below? That's signifies a rule that can be added to later # See: # http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html #################################################################### clean:: -@$(RM) -rf $(OBJ) $(DEPS) $(TARGET) @for pp in $(DIRS) $(DIRS_CLEAN); do echo " " cleaning $$pp; $(MAKE) --no-print-directory -C $$pp clean; done @$(RM) -f $(SUB_LIBS) -@$(RM) .*.mk @test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0 clean-remove-object-files: find src|grep '\.o$$' | xargs rm distclean:: clean clean-tests @echo include cleaned # Removing the externalpackage installation. When we have more packages, need a better way @$(RM) -rf $(BOUT_TOP)/include/pvode @echo lib cleaned @$(RM) -rf $(BOUT_TOP)/lib/* -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o -@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config @echo externalpackages cleaned @touch $(BOUT_TOP)/configure @echo autom4te.cache cleaned -@$(RM) $(BOUT_TOP)/tools/pylib/boutconfig/__init__.py @echo generated Python boutconfig module cleaned clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests clean-unit-tests: @echo " tests/unit cleaned" @$(MAKE) --no-print-directory -C tests/unit clean clean-integrated-tests: @echo " tests/integrated cleaned" @$(MAKE) --no-print-directory -C tests/integrated clean clean-mms-tests: @echo " tests/MMS cleaned" @$(MAKE) --no-print-directory -C tests/MMS clean #################################################################### # Documentation #################################################################### MANUAL_DIR=$(BOUT_TOP)/manual doxygen: $(MAKE) -C $(MANUAL_DIR) doxygen breathe-autogen: $(MAKE) -C $(MANUAL_DIR) breathe_autogen sphinx-docs-html: $(MAKE) -C $(MANUAL_DIR) sphinx-html sphinx-docs-latex: $(MAKE) -C $(MANUAL_DIR) sphinx-pdf manual: $(MAKE) -C $(MANUAL_DIR) manual-html: $(MAKE) -C $(MANUAL_DIR) html manual-pdf: $(MAKE) -C $(MANUAL_DIR) pdf python: libfast $(MAKE) -C tools/pylib python3 python2: libfast $(MAKE) -C tools/pylib python2 python-all:python python2 ###################################################################### # Code coverage ###################################################################### GCOV = LCOV = GENHTML = abs_builddir = /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich # Code coverage # # Optional: # - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. # Multiple directories may be specified, separated by whitespace. # (Default: $(top_builddir)) # - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated # by lcov for code coverage. (Default: # bout-coverage.info) # - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage # reports to be created. (Default: # bout-coverage) # - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, # set to 0 to disable it and leave empty to stay with the default. # (Default: empty) # - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov # instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov # instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) # - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov # - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the # collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) # - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov # instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) # - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering # lcov instance. (Default: empty) # - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov # instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) # - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the # genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml # instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) # - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore # # The generated report will be titled using the $(PACKAGE_NAME) and # $(PACKAGE_VERSION). In order to add the current git hash to the title, # use the git-version-gen script, available online. # Optional variables CODE_COVERAGE_DIRECTORY ?= $(abs_builddir) CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage CODE_COVERAGE_BRANCH_COVERAGE ?= CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*" # Use recursive makes in order to ignore errors during check check-code-coverage: @echo "Need to reconfigure with --enable-code-coverage" # Capture code coverage data code-coverage-capture: code-coverage-capture-hook @echo "Need to reconfigure with --enable-code-coverage" # Hook rule executed before code-coverage-capture, overridable by the user code-coverage-capture-hook: GITIGNOREFILES ?= GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) .PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean + make -j2 shared Compiling field.cxx Compiling nc_format.cxx Compiling ncxx4.cxx In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field2d.cxx In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from ncxx4.hxx:51: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field2d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pnetcdf.cxx Compiling h5_format.cxx Compiling field3d.cxx In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field3d.cxx:29: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling datafile.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldperp.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fieldperp.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_data.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling dataformat.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldgroup.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling formatfactory.cxx Compiling field_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from impls/netcdf4/ncxx4.hxx:51, from formatfactory.cxx:8: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling cyclic.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_parderiv.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldgenerators.cxx Compiling parderiv_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_tri.cxx Compiling initialprofiles.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_band.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vecops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pdd.cxx In file included from ../../../../../include/bout/bout_enum_class.hxx:27, from ../../../../../include/fft.hxx:33, from pdd.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector2d.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling spt.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling where.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling globalfield.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mumps_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling generated_fieldops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shoot_laplace.cxx Compiling boutmesh.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/bout/array.hxx:31, from ../../../../include/utils.hxx:36, from ../../../../include/options.hxx:45, from ../../../../include/bout/deriv_store.hxx:42: In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field3D::isAllocated() const' at ../../../../include/field3d.hxx:206:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2029:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field2D::isAllocated() const' at ../../../../include/field2d.hxx:104:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2040:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ Compiling multigrid_alg.cxx Compiling shiftedmetric.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_solver.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fci.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling naulin_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling identity.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_laplace.cxx Compiling gridfromoptions.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': invert_laplace.cxx:100:24: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:770:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 770 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:800:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 800 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:831:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 831 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Compiling gridfromfile.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacefactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bilinear.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexy.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:69, from laplacexy.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315, from /usr/include/mpich-x86_64/petsc/petscsys.h:47, from /usr/include/mpich-x86_64/petsc/petscvec.h:9, from /usr/include/mpich-x86_64/petsc/petscmat.h:6, from /usr/include/mpich-x86_64/petsc/petscpc.h:6, from /usr/include/mpich-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-cyclic.cxx Compiling monotonic_hermite_spline.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lagrange_4pt.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-petsc.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling difops.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fft_fftw.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lapack_routines.cxx Compiling mesh.cxx In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling physicsmodel.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling smoothing.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sourcex.cxx Compiling boundary_standard.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gyro_average.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': gyro_average.cxx:170:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 170 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': gyro_average.cxx:187:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 187 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': gyro_average.cxx:194:19: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 194 | return gyroPade0(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:175:9: note: declared here 175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': gyro_average.cxx:209:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 209 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': gyro_average.cxx:226:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 226 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': gyro_average.cxx:232:19: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 232 | return gyroPade1(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': gyro_average.cxx:238:18: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 238 | tmp = gyroPade1(tmp, rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': gyro_average.cxx:243:39: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:243:29: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': gyro_average.cxx:251:39: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:251:29: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': gyro_average.cxx:260:19: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 260 | return gyroPade2(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:250:9: note: declared here 250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ Compiling snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling arkode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling meshfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling surfaceiter.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling ida.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315, from /usr/include/mpich-x86_64/petsc/petscsys.h:47, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from petsc.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)': petsc.cxx:838:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~ In file included from /usr/include/mpich-x86_64/petsc/petscsys.h:1207: /usr/include/mpich-x86_64/petsc/petscerror.h:336:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | #define PetscCall(...) do { \ | ^~ /usr/include/mpich-x86_64/petsc/petscerror.h:368:22: note: in expansion of macro 'PetscCall' 368 | #define CHKERRQ(...) PetscCall(__VA_ARGS__) | ^~~~~~~~~ petsc.cxx:838:79: note: in expansion of macro 'CHKERRQ' 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~~~~~~ Compiling snes.cxx In file included from ../../../../include/bout/bout_enum_class.hxx:27, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/bout_enum_class.hxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling index_derivs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../../include/bout/index_derivs.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling imex-bdf2.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling power.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepc.cxx Compiling adams_bashforth.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from adams_bashforth.hxx:31, from adams_bashforth.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling karniadakis.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling euler.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk3-ssp.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf45.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parallel_boundary_region.cxx Compiling parallel_boundary_op.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cashkarp.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fv_ops.cxx In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/bout/../msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)': fv_ops.cxx:436:17: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized] 436 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ fv_ops.cxx:408:22: note: 'xout' was declared here 408 | comm_handle xin, xout; | ^~~~ Compiling rk4simple.cxx Compiling options_ini.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf34.cxx Compiling options_netcdf.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from options_netcdf.cxx:7: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling rkgeneric.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout_types.cxx In file included from bout_types.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkscheme.cxx Compiling boutexception.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from boutexception.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from boutexception.cxx:3: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling derivs.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkschemefactory.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling split-rk.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling msg_stack.cxx In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling output.cxx In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling utils.cxx In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling optionsreader.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solverfactory.cxx In file included from impls/pvode/pvode.hxx:37, from solverfactory.cxx:12: ../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined 93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE | In file included from /usr/include/mpich-x86_64/nvector/nvector_parallel.h:44, from impls/arkode/arkode.hxx:47, from solverfactory.cxx:4: /usr/include/mpich-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition 38 | #define PVEC_REAL_MPI_TYPE MPI_SUNREALTYPE | In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutcomm.cxx Compiling timer.cxx In file included from ../../include/bout/sys/timer.hxx:11, from timer.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/iomanip:42, from ../../include/bout/sys/timer.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling range.cxx Compiling petsclib.cxx Compiling expressionparser.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from petsclib.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepclib.cxx Compiling type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++.cxx In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++-time.cxx Creating libbout++.so invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ Creating libbout++.so src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': src/invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ src/invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': src/invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ + ls -l lib total 75224 lrwxrwxrwx. 1 mockbuild mock 18 Mar 22 04:06 libbout++.so -> libbout++.so.4.4.0 -rwxr-xr-x. 1 mockbuild mock 75501264 Mar 22 04:06 libbout++.so.4.4.0 -rw-r--r--. 1 mockbuild mock 977106 Mar 22 04:00 libpvode.a lrwxrwxrwx. 1 mockbuild mock 17 Mar 22 04:06 libpvode.so -> libpvode.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 255088 Mar 22 04:06 libpvode.so.1.0.0 -rw-r--r--. 1 mockbuild mock 215906 Mar 22 04:00 libpvpre.a lrwxrwxrwx. 1 mockbuild mock 17 Mar 22 04:06 libpvpre.so -> libpvpre.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 71744 Mar 22 04:06 libpvpre.so.1.0.0 + make -j2 python make -C tools/pylib python3 make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib' PY=python3 make -C _boutcore_build pseudoinstall make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build' Generating boutcore.pyx Generating setup.py Generating helper.cxx Generating helper.h Generating resolve_enum.pxd resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied Generating boutcpp.pxd warning: resolve_enum.pxd:49:25: 'deflt' redeclared warning: resolve_enum.pxd:189:28: 'Standard' redeclared warning: resolve_enum.pxd:223:19: 'Standard' redeclared Compiling boutcore.pyx because it changed. [1/1] Cythonizing boutcore.pyx running build_ext building 'boutcore' extension creating build creating build/temp.linux-x86_64-cpython-311 mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.11 -c boutcore.cpp -o build/temp.linux-x86_64-cpython-311/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5, from boutcore.cpp:1050: /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx:30, from boutcore.cpp:1030: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from boutcore.cpp:1024: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ boutcore.cpp: At global scope: boutcore.cpp:25815:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 25815 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: boutcore.cpp:50750:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 50750 | return __pyx_r; | ^~~~~~~ boutcore.cpp:50393:12: note: ‘__pyx_r’ was declared here 50393 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_8boutcore_44bracket(_object*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’ at boutcore.cpp:43784:41: boutcore.cpp:43860:64: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 43860 | __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2642, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’: boutcore.cpp:52261:18: note: ‘__pyx_r’ was declared here 52261 | BRACKET_METHOD __pyx_r; | ^~~~~~~ mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.11 -c boutexception_helper.cxx -o build/temp.linux-x86_64-cpython-311/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.11 -c helper.cxx -o build/temp.linux-x86_64-cpython-311/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ creating build/lib.linux-x86_64-cpython-311 mpic++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/boutcore.o build/temp.linux-x86_64-cpython-311/boutexception_helper.o build/temp.linux-x86_64-cpython-311/helper.o -L/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/mpich/lib -L/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib -L/usr/lib64 -lm -lbout++ -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes copying build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -> cp boutcore*.so .. make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build' make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib' ++ pwd + export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib + make -j2 -C manual html make: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual' cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2162 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2213 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2220 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2439 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.6 Notice: Output directory 'bout' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... 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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_standard.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_standard.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/assert.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/assert.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/constants.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/constants.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deprecated.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deprecated.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deriv_store.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deriv_store.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/expr.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/expr.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/field_visitor.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/field_visitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fv_ops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fv_ops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/globalfield.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/globalfield.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexy.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexy.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invertable_operator.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invertable_operator.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/macro_for_each.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/macro_for_each.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/monitor.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/monitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/openmpwrap.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/openmpwrap.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/petsclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/petsclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/type_name.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/type_name.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uncopyable.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uncopyable.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/traits.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/traits.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout_types.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout_types.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutcomm.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutcomm.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutexception.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutexception.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutmain.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutmain.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/cyclic_reduction.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/cyclic_reduction.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dcomplex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dcomplex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fft.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fft.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_data.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_data.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fieldperp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fieldperp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/globals.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/globals.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/initialprofiles.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/initialprofiles.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_parderiv.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_parderiv.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/lapack_routines.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/lapack_routines.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/mask.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/mask.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvode.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvode.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvspgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvspgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/iterativ.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/iterativ.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnlmath.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnlmath.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnltyps.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnltyps.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/nvector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/nvector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/pvbbdpre.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/pvbbdpre.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/smalldense.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/smalldense.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/spgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/spgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/vector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/vector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/smoothing.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/smoothing.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/sourcex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/sourcex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/stencils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/stencils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/unused.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/unused.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/utils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/utils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vecops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vecops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/where.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/where.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_data.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_data.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgroup.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgroup.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldperp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldperp.cxx... Reading /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/generated_fieldops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/generated_fieldops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/globalfield.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/globalfield.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/initialprofiles.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/initialprofiles.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/where.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/where.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/datafile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/datafile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/dataformat.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/dataformat.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/sr/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for const vector< int > NcFormat::getSize(const string &var) Possible candidates: 'virtual const std::vector< int > DataFormat::getSize(const char *var)=0' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual const std::vector< int > DataFormat::getSize(const std::string &var)=0' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'const std::vector< int > EmptyFormat::getSize(const char *var)' at line 46 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'const std::vector< int > EmptyFormat::getSize(const std::string &var)' at line 47 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'const std::vector< int > H5Format::getSize(const char *var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > H5Format::getSize(const std::string &var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > Ncxx4::getSize(const char *var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'const std::vector< int > Ncxx4::getSize(const std::string &var) override' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'const vector< int > PncFormat::getSize(const char *var) override' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'const vector< int > PncFormat::getSize(const std::string &var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:659: warning: no uniquely matching class member found for bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:715: warning: no uniquely matching class member found for bool NcFormat::read(char *var, const string &name, int n) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:756: warning: no uniquely matching class member found for bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:834: warning: no uniquely matching class member found for bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:879: warning: no uniquely matching class member found for bool NcFormat::write(char *var, const string &name, int n) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:941: warning: no uniquely matching class member found for bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1043: warning: no uniquely matching class member found for bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1089: warning: no uniquely matching class member found for bool NcFormat::read_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1130: warning: no uniquely matching class member found for bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1212: warning: no uniquely matching class member found for bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1260: warning: no uniquely matching class member found for bool NcFormat::write_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1335: warning: no uniquely matching class member found for bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'template < Args > BaseType * Factory< BaseType, TypeCreator >::create(const std::string &name, Args &&... args)' at line 57 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx 'static LaplaceXZ * LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE)' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx 'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx 'static Mesh * Mesh::create(Options *opt=nullptr)' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx 'static Solver * Solver::create(Options *opts=nullptr)' at line 308 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'static Solver * Solver::create(const SolverType &type, Options *opts=nullptr)' at line 311 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'Interpolation * InterpolationFactory::create(Mesh *mesh)' at line 49 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr)' at line 50 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(const std::string &name, Options *options=nullptr, Mesh *mesh=nullptr)' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'static Laplacian * Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 212 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1229: warning: no matching class member found for Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string ®ion) Possible candidates: 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY")' at line 184 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1244: warning: no matching class member found for Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 189 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 191 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 193 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 195 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1265: warning: no matching class member found for Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 198 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 203 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 208 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 213 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx:59: warning: no matching class member found for STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const Possible candidates: 'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 662 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx 'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 669 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx c/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sortinsh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found g lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/constants.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deprecated.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deriv_store.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/expr.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/field_visitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexy.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invertable_operator.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/macro_for_each.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/monitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/openmpwrap.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4./builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' 4.2/build_mpich/include/bout/petsclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/type_name.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uncopyable.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/traits.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout_types.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutcomm.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutexception.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutmain.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/cyclic_reduction.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dcomplex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fft.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_data.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fieldperp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/globals.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/initialprofiles.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_parderiv.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/lapack_routines.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/mask.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvode.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvspgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/iterativ.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnlmath.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnltyps.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/nvector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/pvbbdpre.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/smalldense.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/spgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/vector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/smoothing.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/sourcex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/stencils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/unused.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/utils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vecops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/where.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_data.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgroup.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldperp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/generated_fieldops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/globalfield.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/initialprofiles.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/where.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/datafile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/dataformat.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Generating docs for file /builddir/build/B/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' UILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx... Generating docs for file /builddir//builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutcomm.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sy/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag found s/expressionparser.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AdamsBashforthSolver... Generating docs for compound Add... Generating docs for compound ArkodeSolver... Generating docs for compound Array... Generating docs for compound ArrayData... Generating docs for compound asExpr... Generating docs for compound asExpr< double >... Generating docs for compound asExpr< Field3D >... Generating docs for compound asExpr< float >... Generating docs for compound asExpr< int >... Generating docs for compound Bilinear... Generating docs for compound BinaryExpr... Generating docs for compound BinaryResult... Generating docs for compound BoundaryConstGradient... Generating docs for compound BoundaryConstLaplace... Generating docs for compound BoundaryDirichlet... Generating docs for compound BoundaryDirichlet_2ndOrder... Generating docs for compound BoundaryDirichlet_4thOrder... Generating docs for compound BoundaryDirichlet_O3... Generating docs for compound BoundaryDirichlet_O4... Generating docs for compound BoundaryDivCurl... Generating docs for compound BoundaryFactory... Generating docs for compound BoundaryFree... Generating docs for compound BoundaryFree_O2... Generating docs for compound BoundaryFree_O3... Generating docs for compound BoundaryFromFieldAligned... Generating docs for compound BoundaryModifier... Generating docs for compound BoundaryNeumann... Generating docs for compound BoundaryNeumann2... Generating docs for compound BoundaryNeumann_2ndOrder... Generating docs for compound BoundaryNeumann_4thOrder... Generating docs for compound BoundaryNeumann_NonOrthogonal... Generating docs for compound BoundaryNeumann_O4... Generating docs for compound BoundaryNeumannPar... Generating docs for compound BoundaryOp... Generating docs for compound BoundaryOpBase... Generating docs for compound BoundaryOpPar... Generating docs for compound BoundaryOpPar_dirichlet... Generating docs for compound BoundaryOpPar_dirichlet_interp... Generating docs for compound BoundaryOpPar_dirichlet_O3... Generating docs for compound BoundaryOpPar_neumann... Generating docs for compound BoundaryRegion... Generating docs for compound BoundaryRegionBase... Generating docs for compound BoundaryRegionPar... Generating docs for nested compound BoundaryRegionPar::IndexPoint... Generating docs for nested compound BoundaryRegionPar::Indices... Generating docs for nested compound BoundaryRegionPar::RealPoint... Generating docs for compound BoundaryRegionXIn... Generating docs for compound BoundaryRegionXOut... Generating docs for compound BoundaryRegionYDown... Generating docs for co/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' mpound BoundaryRegionYUp... Generating docs for compound BoundaryRelax... Generating docs for compound BoundaryRobin... Generating docs for compound BoundaryToFieldAligned... Generating docs for compound BoundaryWidth... Generating docs for compound BoundaryZeroLaplace... Generating docs for compound BoundaryZeroLaplace2... Generating docs for compound BoutComm... Generating docs for compound BoutException... Generating docs for compound BoutIterationFail... Generating docs for compound BoutMask... Generating docs for compound BoutMesh... Generating docs for nested compound BoutMesh::CommHandle... Generating docs for compound BoutMonitor... Generating docs for compound BoutRhsFail... Generating docs for compound CASHKARPScheme... Generating docs for compound ConditionalOutput... Generating docs for compound Coordinates... Generating docs for compound CvodeSolver... Generating docs for compound CyclicReduce... Generating docs for compound Datafile... Generating docs for nested compound Datafile::VarStr... Generating docs for compound DataFormat... Generating docs for compound DeferredFunction... Generating docs for compound DerivativeStore... Generating docs for compound DerivativeType... Generating docs for compound DirectionTypes... Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound EmptyFormat... Generating docs for compound enumWrapper... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAbs... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldCos... Generating docs for compound FieldCosh... Generating docs for compound FieldData... Generating docs for compound FieldErf... Generating docs for compound FieldFactory... Generating docs for compound FieldFunction... Generating docs for compound FieldGaussian... Generating docs for compound FieldGenerator... Generating docs for compound FieldGenOneArg... Generating docs for compound FieldGenTwoArg... Generating docs for compound FieldGroup... Generating docs for compound FieldHeaviside... Generating docs for compound FieldMax... Generating docs for compound FieldMin... Generating docs for compound FieldMixmode... Generating docs for compound FieldNull... Generating docs for compound FieldPerp... Generating docs for compound FieldRound... Generating docs for compound FieldSin... Generating docs for compound FieldSinh... Generating docs for compound FieldSqrt... Generating docs for compound FieldTanh... Generating docs for compound FieldTanhHat... Generating docs for compound FieldValue... Generating docs for compound FieldValuePtr... Generating docs for compound FieldVisitor... Generating docs for compound FormatFactory... Generating docs for compound GlobalField... Generating docs for compound GlobalField2D... Generating docs for compound GlobalField3D... Generating docs for compound GridDataSource... Generating docs for compound GridFile... Generating docs for compound GridFromOptions... Generating docs for compound H5Format... Generating docs for compound HermiteSpline... Generating docs for compound IdaSolver... Generating docs for compound IMEXBDF2... Generating docs for compound Interpolation... Generating docs for compound InterpolationFactory... Generating docs for compound InvertPar... Generati/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' ng docs for compound InvertParCR... Generating docs for compound KarniadakisSolver... Generating docs for compound Lagrange4pt... Generating docs for compound LaplaceCyclic... Generating docs for compound LaplaceFactory... Generating docs for compound LaplaceMultigrid... Generating docs for compound LaplaceMumps... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePDD... Generating docs for nested compound LaplacePDD::PDD_data... Generating docs for compound LaplacePetsc... Generating docs for compound LaplaceSerialBand... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceShoot... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for nested compound LaplaceXY::LaplaceXYMonitor... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZcyclic... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating docs for compound LegacyModel... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound Matrix... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating docs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MonotonicHermiteSpline... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound Multigrid1DP... Generating docs for compound Multigrid2DPf1D... Generating docs for compound MultigridAlg... Generating docs for compound MultigridSerial... Generating docs for compound multiostream... Generating docs for compound multioutbuf... Generating docs for compound multioutbuf_init... Generating docs for compound Multiply... Generating docs for compound NcFormat... Generating docs for compound Ncxx4... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::OptionValue... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParDerivFactory... Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscSolver... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound PncFormat... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations... Generating docs for compound PromoteType... Generating docs for compound PvodeSolver... Generating docs for compound RangeIterator... Generating docs for compound Region... Generating docs for compound RegionStats... Generating docs for compound RegisterInFactory... Generating docs for compound RegisterInFactory< Solver, DerivedType >... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generat/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' ing docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer... Generating docs for compound Uncopyable... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating concept documentation... Generating namespace index... Generating docs for namespace bout Generating docs for compound bout::HeatFluxSNB... Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for compound bout::experimental::OptionsNetCDF... Generating docs for namespace bout::fft Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::InvertableOperator... Generating docs for namespace bout::utils Generating docs for compound bout::utils::_Unique_if... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual... Generating docs for compound bout::utils::details::StaticCastOrThrow... Generating docs for compound bout::utils::details::ToString... Generating docs for namespace FV Generating docs for compound FV::Fromm... Generating docs for compound FV::MC... Generating docs for compound FV::MinMod... Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for namespace gen_fieldops Generating docs for compound gen_fieldops::Field... Generating docs for namespace pvode Generating docs for compound pvode::bandmat_type... Generating docs for compound pvode::CVodeMemRec... Generating docs for compound pvode::machenv_type... Generating docs for compound pvode::nvec_type... Generating docs for compound pvode::pvbbddata_type... Generating docs for compound pvode::SpgmrMemRec... Generating docs for namespace SI Generating docs for namespace std Generating docs for compound std::hash< uuids::uuid >... Generating docs for namespace uuids Generating docs for compound uuids::basic_uuid_random_generator... Generating docs for compound uuids::uuid... Generating docs for compound uuids::uuid_name_generator... Generating docs for compound uuids::uuid_time_generator... Generating docs for namespace uuids::detail Generating docs for compound uuids::detail::sha1... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag found /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' :_Unique_if< T[N]> Generating XML output for class AdamsBashforthSolver Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class pvode::bandmat_type Generating XML output for class uuids::basic_uuid_random_generator Generating XML output for class Bilinear Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class BoundaryFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet Generating XML output for class BoundaryOpPar_dirichlet_interp Generating XML output for class BoundaryOpPar_dirichlet_O3 Generating XML output for class BoundaryOpPar_neumann Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class Coordinates Generating XML output for class pvode::CVodeMemRec Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class Datafile Generating XML output for class DataFormat Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Gene/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections rating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class EmptyFormat Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAbs Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldCos Generating XML output for class FieldCosh Generating XML output for class FieldData Generating XML output for class FieldErf Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generating XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNull Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldSin Generating XML output for class FieldSinh Generating XML output for class FieldSqrt Generating XML output for class FieldTanh Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldVisitor Generating XML output for class FormatFactory Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class H5Format Generating XML output for class std::hash< uuids::uuid > Generating XML output for class bout::HeatFluxSNB Generating XML output for class HermiteSpline Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class BoundaryRegionPar::IndexPoint Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class Interpolation Generating XML output for class InterpolationFactory Generating XML output for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParCR Generating XML output for class bout::utils::details::IsEqual Generating XML output for class KarniadakisSolver Generating XML output for class Lagrange4pt Generating XML output for class LaplaceCyclic Generating XML output for class LaplaceFactory Generating XML output for class LaplaceMultigrid Generating XML output for class LaplaceMumps Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePDD Generating XML output for class LaplacePetsc Generating XML output for class LaplaceSerialBand Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceShoot Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXY::LaplaceXYM/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' onitor Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZcyclic Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class LegacyModel Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class pvode::machenv_type Generating XML output for class Matrix Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class MonotonicHermiteSpline Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class Multigrid1DP Generating XML output for class Multigrid2DPf1D Generating XML output for class MultigridAlg Generating XML output for class MultigridSerial Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class NcFormat Generating XML output for class Ncxx4 Generating XML output for class pvode::nvec_type Generating XML output for class OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::experimental::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Options::OptionValue Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for class ParDerivFactory Generating XML output for class ParseException Generating XML output for class LaplacePDD::PDD_data Generating XML output for class PetscLib Generating XML output for class PetscSolver Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class PncFormat Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class pvode::pvbbddata_type Generating XML output for class PvodeSolver Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class RegisterInFactory Generating XML output for class RegisterInFactory< Solver, DerivedType > Generating XML output for class registerMethod Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetrics Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class uuids::detail::sha1 Generating XML output for class ShiftedMetric Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class pvode::SpgmrMemRec Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class stencil G/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found enerating XML output for class FV::Stencil1D Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class uuids::uuid Generating XML output for class uuids::uuid_name_generator Generating XML output for class uuids::uuid_time_generator Generating XML output for class Datafile::VarStr Generating XML output for class Solver::VarStr Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for namespace @110 Generating XML output for namespace @111 Generating XML output for namespace @125 Generating XML output for namespace @178 Generating XML output for namespace @179 Generating XML output for namespace @180 Generating XML output for namespace @192 Generating XML output for namespace @207 Generating XML output for namespace @208 Generating XML output for namespace @210 Generating XML output for namespace @212 Generating XML output for namespace @214 Generating XML output for namespace @216 Generating XML output for namespace @218 Generating XML output for namespace @220 Generating XML output for namespace @222 Generating XML output for namespace @224 Generating XML output for namespace @226 Generating XML output for namespace @228 Generating XML output for namespace @230 Generating XML output for namespace @240 Generating XML output for namespace @245 Generating XML output for namespace @247 Generating XML output for namespace @249 Generating XML output for namespace @252 Generating XML output for namespace @256 Generating XML output for namespace @258 Generating XML output for namespace @262 Generating XML output for namespace @5 Generating XML output for namespace bout Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::experimental Generating XML output for namespace bout::fft Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for namespace uuids Generating XML output for namespace uuids::detail Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file bout_enum_class.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file deprecated.hxx Generating XML output for file deriv_store.hxx Generating XML output for file expr.hxx Generating XML output for file field_visitor.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file format.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file griddata.hxx Generating XML output for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file slepclib.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file uuid.h Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file boutmain.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file datafile.hxx Generating XML output for file dataformat.hxx Generating XML output for file dcomplex.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldperp.hxx Generating XML output for file globals.hxx Generating XML output for file gyro_average.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_factory.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file mask.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file options.hxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file band.h Generating XML output for file cvdiag.h Generating XML output for file cvode.h Generating XML output for file cvspgmr.h Generating XML output for file iterativ.h Generating XML output for file llnlmath.h Generating XML output for file llnltyps.h Generating XML output for file nvector.h Generating XML output for file pvbbdpre.h Generating XML output for file smalldense.h Generating XML output for file spgmr.h Generating XML output for file vector.h Generating XML output for file smoothing.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file where.hxx Generating XML output for file bout++-time.cxx Generating XML output for file bout++-time.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fie/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' ldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file datafile.cxx Generating XML output for file dataformat.cxx Generating XML output for file formatfactory.cxx Generating XML output for file formatfactory.hxx Generating XML output for file emptyformat.hxx Generating XML output for file h5_format.cxx Generating XML output for file h5_format.hxx Generating XML output for file nc_format.cxx Generating XML output for file nc_format.hxx Generating XML output for file ncxx4.cxx Generating XML output for file ncxx4.hxx Generating XML output for file pnetcdf.cxx Generating XML output for file pnetcdf.hxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx Generating XML output for file mumps_laplace.cxx Generating XML output for file mumps_laplace.hxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pdd.cxx Generating XML output for file pdd.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file shoot_laplace.cxx Generating XML output for file shoot_laplace.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacefactory.cxx Generating XML output for file laplacefactory.hxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file parderiv_factory.cxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file interpolation.cxx Generating XML output for file bilinear.cxx Generating XML output for file hermite_spline.cxx Generating XML output for file interpolation_factory.cxx Generating XML output for file lagrange_4pt.cxx Generating XML output for file monotonic_hermite_spline.cxx Generating XML output for file mesh.cxx Generating XML output for file meshfactory.cxx Generating XML output for file meshfactory.hxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmetric.cxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file adams_bashforth.cxx Generating XML output for file adams_bashforth.hxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file karniadakis.cxx Generating XML output for file karniadakis.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file cashkarp.hxx Generating XML output for file rk4simple.cxx Generating XML output for file rk4simple.hxx Generating XML output for file rkf34.cxx Generating XML output for file rkf34.hxx Generating XML output for file rkf45.cxx Generating XML output for file rkf45.hxx Generating XML output for file rkgeneric.cxx Generating XML output for file rkgeneric.hxx Generating XML output for file rkscheme.cxx Generating XML output for file rkschemefactory.cxx Generating XML output for file rkschemefactory.hxx Generating XML output for file slepc.cxx Generating XML output for file slepc.hxx Generating XML output for file snes.cxx Generating XML output for file snes.hxx Generating XML output for file split-rk.cxx Generating XML output for file split-rk.hxx Generating XML output for file solver.cxx Generating XML output for file solverfactory.cxx Generating XML output for file bout_types.cxx Generating XML output for file boutcomm.cxx Generating XML output for file boutexception.cxx Generating XML output for file derivs.cxx Generating XML output for file expressionparser.cxx Generating XML output for file msg_stack.cxx Generating XML output for file options.cxx Generating XML output for file optionparser.hxx Generating XML output for file options_ini.cxx Generating XML output for file options_ini.hxx Generating XML output for file options_netcdf.cxx Generating XML output for file optionsreader.cxx Generating XML output for file output.cxx Generating XML output for file petsclib.cxx Generating XML output for file range.cxx Generating XML output for file slepclib.cxx Generating XML output for file timer.cxx Generating XML output for file type_name.cxx Generating XML output for file utils.cxx Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 18676/65536 hits=185173 misses=19455 symbol lookup cache used 21545/65536 hits=227687 misses=21545 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/ Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 41 source files that are out of date updating environment: [new config] 41 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata reading sources... [ 4%] _apidoc/boututils No mlab available reading sources... [ 7%] _apidoc/zoidberg reading sources... [ 9%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 14%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 19%] developer_docs/file_io reading sources... [ 21%] developer_docs/git_basics reading sources... [ 24%] developer_docs/mesh reading sources... [ 26%] developer_docs/natural_language reading sources... [ 29%] developer_docs/performance_profiling reading sources... [ 31%] index reading sources... [ 34%] user_docs/BOUT_Gradperp_op reading sources... [ 36%] user_docs/advanced_install reading sources... [ 39%] user_docs/algebraic_operators reading sources... [ 41%] user_docs/boundary_options reading sources... [ 43%] user_docs/bout_functions_for_physics reading sources... [ 46%] user_docs/bout_options reading sources... [ 48%] user_docs/coordinates reading sources... [ 51%] user_docs/differential_operators reading sources... [ 53%] user_docs/eigenvalue_solver reading sources... [ 56%] user_docs/input_grids reading sources... [ 58%] user_docs/installing reading sources... [ 60%] user_docs/introduction reading sources... [ 63%] user_docs/invertable_operator reading sources... [ 65%] user_docs/laplacian reading sources... [ 68%] user_docs/makefiles reading sources... 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[100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised: No module named 'boututils.contour' WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent. looking for now-outdated files... /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/bout_options.rst:533: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:416: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:417: WARNING: Block quote ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target. /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:445: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] _apidoc/boutdata writing output... [ 4%] _apidoc/boututils writing output... [ 7%] _apidoc/zoidberg writing output... [ 9%] api_reference writing output... [ 12%] developer_docs/code_layout writing output... [ 14%] developer_docs/contributing writing output... [ 17%] developer_docs/data_types writing output... [ 19%] developer_docs/file_io writing output... [ 21%] developer_docs/git_basics writing output... [ 24%] developer_docs/mesh writing output... [ 26%] developer_docs/natural_language writing output... [ 29%] developer_docs/performance_profiling writing output... [ 31%] index writing output... [ 34%] user_docs/BOUT_Gradperp_op writing output... [ 36%] user_docs/advanced_install writing output... [ 39%] user_docs/algebraic_operators writing output... [ 41%] user_docs/boundary_options writing output... [ 43%] user_docs/bout_functions_for_physics writing output... [ 46%] user_docs/bout_options writing output... [ 48%] user_docs/coordinates writing output... [ 51%] user_docs/differential_operators writing output... [ 53%] user_docs/eigenvalue_solver writing output... [ 56%] user_docs/input_grids writing output... [ 58%] user_docs/installing writing output... [ 60%] user_docs/introduction writing output... [ 63%] user_docs/invertable_operator writing output... [ 65%] user_docs/laplacian writing output... [ 68%] user_docs/makefiles writing output... [ 70%] user_docs/nonlocal writing output... [ 73%] user_docs/output_and_post writing output... [ 75%] user_docs/parallel-transforms writing output... [ 78%] user_docs/petsc writing output... [ 80%] user_docs/physics_models writing output... [ 82%] user_docs/preconditioning writing output... [ 85%] user_docs/python writing output... [ 87%] user_docs/python_boutcore writing output... [ 90%] user_docs/running_bout writing output... [ 92%] user_docs/staggered_grids writing output... [ 95%] user_docs/testing writing output... [ 97%] user_docs/time_integration writing output... [100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' generating indices... /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: '../_breathe_autogen/file/emptyformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: '../_breathe_autogen/file/pdd_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: '../_breathe_autogen/file/pdd_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/serial_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: '../_breathe_autogen/file/serial_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:265: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:277: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:285: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:294: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:299: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:305: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:311: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:317: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:321: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:325: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:329: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:333: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:336: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:340: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:344: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:348: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:350: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: undefined label: 'sec-derivatives' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:359: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:366: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:370: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: '../_breathe_autogen/file/stencils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] mesh:maxregionblocksize ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] mesh:maxregionblocksize ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] BOUT.inp ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] BOUT.inp ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/griddata_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: '../_breathe_autogen/file/dataformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 7] restart.redistribute -------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7] restart.redistribute -------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If full function ref: Error when parsing function declaration. If the function has no return type: Invalid C++ declaration: Expected end of definition or ;. [error at 27] REGISTER_DERIVATIVE(DDX_C2)() ---------------------------^ If the function has a return type: Error in declarator If declarator-id with parameters-and-qualifiers: Invalid C++ declaration: Expected identifier in nested name. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If parenthesis in noptr-declarator: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ If declarator-id: Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:423: WARNING: Unparseable C++ cross-reference: '-DBOUT_IGNORE_CONDA_ENV=ON' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:436: WARNING: Failed to create a cross reference. A title or caption not found: 'sec-install-bout' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 8] examples/invertable_operator --------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8] examples/invertable_operator --------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: 'tab-snb-options' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:659: WARNING: Unparseable C++ cross-reference: '"zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:119: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:464: WARNING: Unparseable C++ cross-reference: 'https://en.wikipedia.org/wiki/Universally_unique_identifier' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:366: WARNING: Unparseable C++ cross-reference: 'predictor = false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 10] predictor = false ----------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 10] predictor = false ----------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:960: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 13%] figs/memory.png copying images... [ 17%] figs/fluid_norm_mc.png copying images... [ 21%] figs/diffStencils.png copying images... [ 26%] figs/topology_cross_section.png copying images... [ 30%] figs/topology_schematic.png copying images... [ 34%] figs/boutmesh-comms.png copying images... [ 39%] figs/grid_gen.png copying images... [ 43%] figs/zoidberg/elliptic_grid.png copying images... [ 47%] figs/zoidberg/poincare.png copying images... [ 52%] figs/5PointStencilMesh.png copying images... [ 56%] figs/5PointStencilMeshWithStencil.png copying images... [ 60%] figs/5PointStencilMatrix.png copying images... [ 65%] figs/5PointStencilGlobalIndices.png copying images... [ 69%] figs/par_laplace.png copying images... [ 73%] figs/snb-sinusoidal.png copying images... [ 78%] figs/snb-step.png copying images... [ 82%] figs/interchange_inst_test.png copying images... [ 86%] figs/sod_result.png copying images... [ 91%] figs/folder_tree.png copying images... [ 95%] figs/stagLocations.png copying images... [100%] figs/init_balloon.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 164 warnings. The HTML pages are in html. Documentation available in file:///builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/html/index.html make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual' + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib; export LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib ~/build/BUILD/BOUT++-v4.4.2 ~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2 ++ export LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + popd + for mpi in mpich openmpi + pushd build_openmpi + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-03-22 04:00:25.040590291 +0000 +++ ./configure 2023-03-22 04:06:59.633943481 +0000 @@ -1864,7 +1864,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/openmpi/lib --bindir=/usr/lib64/openmpi/bin --sbindir=/usr/lib64/openmpi/sbin --includedir=/usr/include/openmpi-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials configure: WARNING: unrecognized options: --disable-dependency-tracking checking for x86_64-redhat-linux-gnu-mpic++... no checking for x86_64-redhat-linux-gnu-mpicxx... no checking for x86_64-redhat-linux-gnu-mpiCC... no checking for x86_64-redhat-linux-gnu-sxmpic++... no checking for x86_64-redhat-linux-gnu-hcp... no checking for x86_64-redhat-linux-gnu-mpxlC_r... no checking for x86_64-redhat-linux-gnu-mpxlC... no checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no checking for x86_64-redhat-linux-gnu-mpixlcxx... no checking for x86_64-redhat-linux-gnu-mpg++... no checking for x86_64-redhat-linux-gnu-mpc++... no checking for x86_64-redhat-linux-gnu-mpCC... no checking for x86_64-redhat-linux-gnu-cmpic++... no checking for x86_64-redhat-linux-gnu-mpiFCC... no checking for x86_64-redhat-linux-gnu-CCicpc... no checking for x86_64-redhat-linux-gnu-pgCC... no checking for x86_64-redhat-linux-gnu-pathCC... no checking for x86_64-redhat-linux-gnu-sxc++... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for x86_64-redhat-linux-gnu-bgxlC_r... no checking for x86_64-redhat-linux-gnu-bgxlC... no checking for x86_64-redhat-linux-gnu-openCC... no checking for x86_64-redhat-linux-gnu-sunCC... no checking for x86_64-redhat-linux-gnu-crayCC... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for mpic++... mpic++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether mpic++ accepts -g... yes checking for mpic++ option to enable C++11 features... none needed checking for function MPI_Init... yes checking for mpi.h... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c checking for gmake... gmake checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking whether mpic++ supports C++11 features by default... yes checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking does C++ compiler support __PRETTY_FUNCTION__... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether to build with code coverage support... no checking whether C++ compiler accepts -Werror=unknown-warning-option... no checking whether C++ compiler accepts -we10006,10148... no checking whether C++ compiler accepts -Wall... yes checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnull-dereference... yes checking whether C++ compiler accepts -Wno-cast-function-type... yes configure: Enabling default optimisations checking whether C++ compiler accepts -O2... yes configure: Run-time checking enabled configure: -> Level 2 (Basic checking + stack tracing) configure: Segmentation fault handling enabled configure: Output coloring enabled configure: Field name tracking disabled configure: Signaling floating point exceptions disabled checking for addr2line... yes checking for popen... yes checking for backtrace... yes checking for execinfo.h... yes checking for dlfcn.h... yes checking for library containing dladdr... none required configure: Native backtrace enabled ./configure: line 7057: git: command not found checking for fftw-wisdom... /usr/bin/fftw-wisdom checking for fftw3.h... yes checking for libfftw3... yes checking for ncxx4-config... /usr/bin/ncxx4-config configure: -> NetCDF-4 support enabled configure: Parallel-NetCDF support disabled checking for gawk... gawk checking for x86_64-redhat-linux-gnu-gcc... mpicc checking whether the compiler supports GNU C... yes checking whether mpicc accepts -g... yes checking for mpicc option to enable C11 features... none needed checking for h5cc... /usr/bin/h5cc checking for HDF5 type... serial checking for HDF5 libraries... yes (version 1.12.1) checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for main in -lhdf5_hl... yes configure: Found HDF5 checking how to run the C++ preprocessor... mpic++ -E configure: Parallel HDF5 support disabled configure: Supported file formats: netCDF HDF5 checking for libblas... no checking for liblapack... no checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes configure: Using PETSC_DIR=, PETSC_ARCH= checking for //conf... no checking for //lib/petsc/conf... no checking for PETSc >= 3.4.0 ... yes checking PETSc has SUNDIALS support... no checking for SUNDIALS config header... yes checking for SUNDIALS minor version... ok configure: Searching for SUNDIALS IDA library checking for sundials-config... no configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway checking if we can compile with SUNDIALS IDA... yes configure: Using SUNDIALS IDA solver configure: => IDA solver enabled configure: Searching for SUNDIALS CVODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway checking if we can compile with SUNDIALS CVODE... yes configure: Using SUNDIALS CVODE solver configure: => CVODE solver enabled configure: Searching for SUNDIALS ARKODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway checking if we can compile with SUNDIALS ARKODE... yes configure: Using SUNDIALS ARKODE solver configure: => ARKODE solver enabled configure: Scorep support disabled checking for mpark.variant... yes checking for uuid/uuid.h... no configure: PVODE being built without OpenMP support configure: Building PVODE configure: Successfully built PVODE configure: Installing PVODE into BOUT++ sourcetree checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib64 checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyPreferredLanguages... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: Enabling language support with gettext gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/locale' Building language: de Building language: es Building language: fr Building language: zh_CN Building language: zh_TW gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/locale' configure: creating ./config.status config.status: creating make.config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: creating ./config.status config.status: creating make.config config.status: creating bin/bout-config config.status: creating src/makefile config.status: creating tools/pylib/boutconfig/__init__.py config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: ------------------------- configure: Configuration summary configure: ------------------------- configure: PETSc support : yes (has SUNDIALS: no) configure: SLEPc support : no configure: IDA support : yes configure: CVODE support : yes configure: ARKODE support : yes configure: FFTW support : yes configure: NetCDF support : yes configure: Parallel-NetCDF support : no configure: HDF5 support : yes (parallel: no) configure: MUMPS support : no configure: Lapack support : no configure: Scorep support : no configure: OpenMP support : no (schedule: ) configure: Natural language support: yes (path: ${datarootdir}/locale) configure: System UUID generator : no configure: configure: ------------------------------- configure: Data analysis configuration configure: ------------------------------- configure: configure: === IDL === configure: configure: Make sure that the tools/idllib directory is in your IDL_PATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/idllib:'':$IDL_PATH configure: configure: === Python === configure: configure: Make sure that the tools/pylib directory is in your PYTHONPATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/:$PYTHONPATH configure: configure: *** Now run 'gmake' to compile BOUT++ *** + sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config + sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config + sed -e 's/\\#/#/g' -i make.config + cat make.config # configuration file for BOUT++ # September 2008: Converted to use autoconf. Can be manually edited # for the (very) rare occasions when autoconf fails # extra compilation flags: # -DCHECK=lvl Enables a host of additional checks on each operation # such as uninitialised data if lvl is > 0. -DCHECK=3 # enables all tests, while -DCHECK=0 disables them. # Helps when debugging # -DTRACK Keeps track of variable names. # Enables more useful error messages # for SSE2: -msse2 -mfpmath=sse # # This must also specify one or more file formats # -DPDBF PDB format (need to include pdb_format.cxx) # -DNCDF NetCDF format (nc_format.cxx) # PETSc config variables need to be first, else they may clobber other # options (e.g. CXX, CXXFLAGS) PETSC_DIR ?= PETSC_ARCH ?= SLEPC_DIR ?= SLEPC_ARCH ?= # These lines can be replaced in "make install" to point to install directories # They are used in the CXXFLAGS variable below rather than hard-coding the directories BOUT_INCLUDE_PATH=$(BOUT_TOP)/include BOUT_LIB_PATH=$(BOUT_TOP)/lib BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config SONAME=4.4.0 prefix = /usr exec_prefix = /usr datarootdir = /usr/share # This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time BOUT_LOCALE_PATH=${datarootdir}/locale # Created this variable so that a user won't overwrite the CXXFLAGS variable # on the command line, just add to this one BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.4.2\"" -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH) #Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to #avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of = BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)" # Specify the MPI C++ compiler in CXX CXX = mpic++ CC = $(CXX) AR = ar ARFLAGS = cruU RANLIB = ranlib MKDIR = /usr/bin/mkdir -p #################################################################### # Do not need to alter anything below #################################################################### LD = $(CXX) LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes LIBS = -lm CPPFLAGS = #################################################################### # Extra (optional) source files, includes and libs # NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx) # and a file format (nc_format.cxx or pdb_format.cxx) #################################################################### EXTRA_INCS = $(CPPFLAGS) -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc EXTRA_LIBS = $(LIBS) -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/openmpi/lib -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -L$(BOUT_LIB_PATH) -lpvode -lpvpre PRECON_SOURCE = BOUT_VERSION = 4.4.2 #################################################################### # These are used for compiling physics modules using BOUT++ library #################################################################### # Files that are needed by configure and should be dependencies for 'all' OBJ = $(SOURCEC:%.cxx=%.o) ifndef RELEASE LIB_A = $(BOUT_LIB_PATH)/libbout++.a LIB_SO = $(BOUT_LIB_PATH)/libbout++.so LIB = $(BOUT_LIB_PATH)/libbout++.so endif MPARK_VARIANT_INCLUDE_PATH= BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) BOUT_LIBS = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS) CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null) # This will set a default if no TARGET is provided TARGET ?= $(SOURCEC:%.cxx=%) #################################################################### # Definining stuff for recursive make #################################################################### # Phony targets since they are directory names .PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen ifneq ("$(TARGET)","libfast") all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET) else all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS) endif libfast: $(BOUT_CONFIG_FILE) $(DIRS) #################################################################### # Recursively run make through subdirs #################################################################### ifeq ("$(TARGET)" , "lib") $(DIRS): # make $@ slowly using the old method where parallel builds can cause # race conditions that @$(MAKE) -s --no-print-directory TARGET=lib -C $@ all else ifeq ("$(TARGET)","libfast") $(DIRS): # make $@ using the libfast method, where all .o files # are only created in the end @$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET) else MODULE_DIR?=$(shell pwd) $(DIRS): # MODULE_DIR: pass the module directory, where the libraries should be # created. # SUB_NAME is used for creating a library with the expected name. # first a potential trailing slash is removed, and after that the # directory name is extracted. This allows to e.g. specify a directory # as fuu/bar/ and still get an archive named bar.a # The # probably doesn't need to be escaped as everything in the # recipy is passed to the shell, even lines starting with # @$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell f=$@ ; g=$${f%/} ; echo $${g##*/}) TARGET=sub -C $@ endif endif # Create 'lib' and 'include' incase they don't exist $(BOUT_TOP)/include $(BOUT_TOP)/lib: $(MKDIR) $@ #################################################################### # Install header files and libraries #################################################################### INSTALL = /usr/bin/install -c INSTALL_PROGRAM = ${INSTALL} INSTALL_DATA = ${INSTALL} -m 644 INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/openmpi-x86_64/bout++/ # A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo" MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo) install: libfast $(PRE_INSTALL) # Pre-install commands follow. $(NORMAL_INSTALL) # Normal commands follow. $(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert} $(MKDIR) $(DESTDIR)/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib} $(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH) ifeq ("", "yes") $(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark $(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark endif $(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/ $(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/ $(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/ $(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/ ifneq ("x", "x") $(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/openmpi/lib endif ifneq ("$(RM) -f $(BOUT_LIB_PATH)/libbout++.ax", "x") $(INSTALL_PROGRAM) lib/libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_PROGRAM) lib/libpvode.so.* $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_PROGRAM) lib/libpvpre.so.* $(DESTDIR)/usr/lib64/openmpi/lib rm -f $(DESTDIR)/usr/lib64/openmpi/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.so ln -s libpvode.so.1.0.0 $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.so ln -s libpvpre.so.1.0.0 $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.so endif $(INSTALL_PROGRAM) bin/bout-config $(DESTDIR)/usr/lib64/openmpi/bin $(INSTALL_PROGRAM) bin/bout-log-color $(DESTDIR)/usr/lib64/openmpi/bin $(INSTALL_DATA) tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) make.config $(INSTALL_INCLUDE_PATH) for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done $(POST_INSTALL) # Post-install commands follow. @# Modify paths in the bout-config script sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config endif @# Modify paths in the make.config file sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config endif # Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed sed -i '26 i RELEASED = yes' $(INSTALL_INCLUDE_PATH)/make.config uninstall: $(PRE_UNINSTALL) # Pre-uninstall commands follow. $(NORMAL_UNINSTALL) # Normal commands follow. $(RM) $(INSTALL_INCLUDE_PATH)/make.config $(RM) -r $(DESTDIR)/usr/share/bout++/idllib/ $(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-config $(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-log-color $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.a $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.a $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.a $(RM) -r $(DESTDIR)/usr/include/openmpi-x86_64/bout++/ $(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo $(POST_UNINSTALL) # Post-uninstall commands follow. #################################################################### # Builds the library with $(OBJ) which is defined from the SOURCEC variable #################################################################### # Rules for downloading submodules -include $(BOUT_TOP)/makefile.submodules ifeq ("$(TARGET)", "libfast") libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS) endif ifeq ("$(TARGET)", "lib") lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to libbout++.a" @$(AR) $(ARFLAGS) $(LIB_A) $(OBJ) @$(RANLIB) $(LIB) endif endif ifeq ("$(TARGET)", "sub") LIB=$(MODULE_DIR)/$(SUB_NAME).a sub: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to $(LIB)" @$(AR) $(ARFLAGS) $(LIB) $(OBJ) @$(RANLIB) $(LIB) endif endif runtest: ./runtest ifneq ("$(TARGET)", "sub") ifneq ("$(TARGET)", "libfast") ifneq ("$(TARGET)", "lib") ifneq ("$(TARGET)", "runtest") #################################################################### # Make libbout++.a if it doesn't exist with the checklib target #################################################################### libbout++.a: @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) #################################################################### # Make the target (e.g. gas_compress) #################################################################### # first we remove a trailing slash, if present. Note that currently we # dont support several trailing slashes, as in fuu/bar/// DIRS_=$(DIRS:%/=%) # then we extract the directory name, in case it is a longer path # We are not in a recipe, so # needs to be escaped # $$ is an escaped $ DIRS__=$(shell for f in $(DIRS_) ; do echo $${f##*/};done) # now we can generate a list of libraries SUB_LIBS=$(DIRS__:%=%.a) $(SUB_LIBS):$(DIRS__) $(SOURCEC): checklib $(SOURCEC:%.cxx=%.o): $(LIB) $(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS) @echo " Linking" $(TARGET) @$(LD) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) $(LDFLAGS) checklib: ifneq ("$(CHANGED)foo", "foo") @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) endif endif endif endif endif # Ignore missing requirement files -include .*.mk # If it is a libfast target, track changes to rebuild library if needed # # Further track dependencies using gcc's -M feature: # -MF write the generated dependency rule to a file # -MG assume missing headers will be generated and don't stop with an error # -MM generate dependency rule for prerequisite, skipping system headers # -MP add phony target for each header to prevent errors when header is missing # -MT add a target to the generated dependency # Ignore failure, in case some compiler does not support this %.o: $(BOUT_CONFIG_FILE) %.cxx @echo " Compiling " $(@:.o=.cxx) @$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@ ifeq ("$(TARGET)","libfast") test "$@" = "bout++-time.o" || touch $(BOUT_TOP)/lib/.last.o.file endif #################################################################### # Clean target. Pretty self explanatory. # NOTE: See that double colon (::) below? That's signifies a rule that can be added to later # See: # http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html #################################################################### clean:: -@$(RM) -rf $(OBJ) $(DEPS) $(TARGET) @for pp in $(DIRS) $(DIRS_CLEAN); do echo " " cleaning $$pp; $(MAKE) --no-print-directory -C $$pp clean; done @$(RM) -f $(SUB_LIBS) -@$(RM) .*.mk @test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0 clean-remove-object-files: find src|grep '\.o$$' | xargs rm distclean:: clean clean-tests @echo include cleaned # Removing the externalpackage installation. When we have more packages, need a better way @$(RM) -rf $(BOUT_TOP)/include/pvode @echo lib cleaned @$(RM) -rf $(BOUT_TOP)/lib/* -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o -@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config @echo externalpackages cleaned @touch $(BOUT_TOP)/configure @echo autom4te.cache cleaned -@$(RM) $(BOUT_TOP)/tools/pylib/boutconfig/__init__.py @echo generated Python boutconfig module cleaned clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests clean-unit-tests: @echo " tests/unit cleaned" @$(MAKE) --no-print-directory -C tests/unit clean clean-integrated-tests: @echo " tests/integrated cleaned" @$(MAKE) --no-print-directory -C tests/integrated clean clean-mms-tests: @echo " tests/MMS cleaned" @$(MAKE) --no-print-directory -C tests/MMS clean #################################################################### # Documentation #################################################################### MANUAL_DIR=$(BOUT_TOP)/manual doxygen: $(MAKE) -C $(MANUAL_DIR) doxygen breathe-autogen: $(MAKE) -C $(MANUAL_DIR) breathe_autogen sphinx-docs-html: $(MAKE) -C $(MANUAL_DIR) sphinx-html sphinx-docs-latex: $(MAKE) -C $(MANUAL_DIR) sphinx-pdf manual: $(MAKE) -C $(MANUAL_DIR) manual-html: $(MAKE) -C $(MANUAL_DIR) html manual-pdf: $(MAKE) -C $(MANUAL_DIR) pdf python: libfast $(MAKE) -C tools/pylib python3 python2: libfast $(MAKE) -C tools/pylib python2 python-all:python python2 ###################################################################### # Code coverage ###################################################################### GCOV = LCOV = GENHTML = abs_builddir = /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi # Code coverage # # Optional: # - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. # Multiple directories may be specified, separated by whitespace. # (Default: $(top_builddir)) # - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated # by lcov for code coverage. (Default: # bout-coverage.info) # - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage # reports to be created. (Default: # bout-coverage) # - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, # set to 0 to disable it and leave empty to stay with the default. # (Default: empty) # - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov # instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov # instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) # - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov # - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the # collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) # - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov # instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) # - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering # lcov instance. (Default: empty) # - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov # instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) # - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the # genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml # instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) # - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore # # The generated report will be titled using the $(PACKAGE_NAME) and # $(PACKAGE_VERSION). In order to add the current git hash to the title, # use the git-version-gen script, available online. # Optional variables CODE_COVERAGE_DIRECTORY ?= $(abs_builddir) CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage CODE_COVERAGE_BRANCH_COVERAGE ?= CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*" # Use recursive makes in order to ignore errors during check check-code-coverage: @echo "Need to reconfigure with --enable-code-coverage" # Capture code coverage data code-coverage-capture: code-coverage-capture-hook @echo "Need to reconfigure with --enable-code-coverage" # Hook rule executed before code-coverage-capture, overridable by the user code-coverage-capture-hook: GITIGNOREFILES ?= GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) .PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean + make -j2 shared Compiling field.cxx Compiling nc_format.cxx Compiling ncxx4.cxx In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from ncxx4.hxx:51: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling field2d.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from field2d.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pnetcdf.cxx Compiling h5_format.cxx In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from field3d.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling datafile.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldperp.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from fieldperp.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling dataformat.cxx Compiling field_data.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling formatfactory.cxx Compiling fieldgroup.cxx In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from impls/netcdf4/ncxx4.hxx:51, from formatfactory.cxx:8: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling cyclic.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_parderiv.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parderiv_factory.cxx Compiling fieldgenerators.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from parderiv_factory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_tri.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling initialprofiles.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_band.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vecops.cxx Compiling pdd.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/bout_enum_class.hxx:27, from ../../../../../include/fft.hxx:33, from pdd.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling spt.cxx Compiling vector2d.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling where.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling globalfield.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mumps_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic_laplace.cxx Compiling generated_fieldops.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shoot_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from multigrid_laplace.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling naulin_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_alg.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from multigrid_laplace.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutmesh.cxx In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from boutmesh.hxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_solver.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from multigrid_laplace.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/bout/array.hxx:31, from ../../../../include/utils.hxx:36, from ../../../../include/options.hxx:45, from ../../../../include/bout/deriv_store.hxx:42: In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field3D::isAllocated() const' at ../../../../include/field3d.hxx:206:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2029:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field2D::isAllocated() const' at ../../../../include/field2d.hxx:104:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2040:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ Compiling invert_laplace.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': invert_laplace.cxx:100:24: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:770:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 770 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:800:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 800 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:831:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 831 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Compiling shiftedmetric.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacefactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fci.cxx Compiling laplacexy.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:69, from laplacexy.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315, from /usr/include/openmpi-x86_64/petsc/petscsys.h:47, from /usr/include/openmpi-x86_64/petsc/petscvec.h:9, from /usr/include/openmpi-x86_64/petsc/petscmat.h:6, from /usr/include/openmpi-x86_64/petsc/petscpc.h:6, from /usr/include/openmpi-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling identity.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-cyclic.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromoptions.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromfile.cxx Compiling laplacexz-petsc.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bilinear.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fft_fftw.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling monotonic_hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lapack_routines.cxx In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lagrange_4pt.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling physicsmodel.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from ../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling difops.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling smoothing.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation.cxx Compiling sourcex.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gyro_average.cxx Compiling mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': gyro_average.cxx:170:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 170 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': gyro_average.cxx:187:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 187 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': gyro_average.cxx:194:19: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 194 | return gyroPade0(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:175:9: note: declared here 175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': gyro_average.cxx:209:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 209 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': gyro_average.cxx:226:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 226 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': gyro_average.cxx:232:19: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 232 | return gyroPade1(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': gyro_average.cxx:238:18: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 238 | tmp = gyroPade1(tmp, rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': gyro_average.cxx:243:39: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:243:29: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': gyro_average.cxx:251:39: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:251:29: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': gyro_average.cxx:260:19: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 260 | return gyroPade2(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:250:9: note: declared here 250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ Compiling snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling arkode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_standard.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cvode.cxx Compiling boundary_factory.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling ida.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling meshfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315, from /usr/include/openmpi-x86_64/petsc/petscsys.h:47, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from petsc.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling surfaceiter.cxx petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)': petsc.cxx:838:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~ In file included from /usr/include/openmpi-x86_64/petsc/petscsys.h:1207: /usr/include/openmpi-x86_64/petsc/petscerror.h:336:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | #define PetscCall(...) do { \ | ^~ /usr/include/openmpi-x86_64/petsc/petscerror.h:368:22: note: in expansion of macro 'PetscCall' 368 | #define CHKERRQ(...) PetscCall(__VA_ARGS__) | ^~~~~~~~~ petsc.cxx:838:79: note: in expansion of macro 'CHKERRQ' 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling snes.cxx In file included from ../../../../include/bout/bout_enum_class.hxx:27, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from snes.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling imex-bdf2.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from imex-bdf2.hxx:42: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling index_derivs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../../include/bout/index_derivs.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling power.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from power.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepc.cxx Compiling adams_bashforth.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from adams_bashforth.hxx:31, from adams_bashforth.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling karniadakis.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from karniadakis.hxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from rk4.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling euler.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from euler.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk3-ssp.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from rk3-ssp.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf45.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cashkarp.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parallel_boundary_region.cxx Compiling parallel_boundary_op.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4simple.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fv_ops.cxx In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/bout/../msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)': fv_ops.cxx:436:17: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized] 436 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ fv_ops.cxx:408:22: note: 'xout' was declared here 408 | comm_handle xin, xout; | ^~~~ Compiling rkf34.cxx Compiling options_ini.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkgeneric.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from rkgeneric.hxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_netcdf.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from options_netcdf.cxx:7: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling rkscheme.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout_types.cxx In file included from bout_types.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutexception.cxx Compiling rkschemefactory.cxx In file included from boutexception.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from boutexception.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling derivs.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling split-rk.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling msg_stack.cxx In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver.cxx Compiling options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling output.cxx In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solverfactory.cxx Compiling utils.cxx In file included from impls/pvode/pvode.hxx:37, from solverfactory.cxx:12: ../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined 93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE | In file included from /usr/include/openmpi-x86_64/nvector/nvector_parallel.h:44, from impls/arkode/arkode.hxx:47, from solverfactory.cxx:4: /usr/include/openmpi-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition 38 | #define PVEC_REAL_MPI_TYPE MPI_SUNREALTYPE | In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling optionsreader.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutcomm.cxx Compiling timer.cxx Compiling range.cxx Compiling petsclib.cxx In file included from ../../include/bout/sys/timer.hxx:11, from timer.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/iomanip:42, from ../../include/bout/sys/timer.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from petsclib.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from petsclib.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling expressionparser.cxx In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepclib.cxx Compiling type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++.cxx In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++-time.cxx Creating libbout++.so invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ Creating libbout++.so src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': src/invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ src/invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': src/invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ + ls -l lib total 87356 lrwxrwxrwx. 1 mockbuild mock 18 Mar 22 04:13 libbout++.so -> libbout++.so.4.4.0 -rwxr-xr-x. 1 mockbuild mock 79421664 Mar 22 04:13 libbout++.so.4.4.0 -rw-r--r--. 1 mockbuild mock 6733842 Mar 22 04:07 libpvode.a lrwxrwxrwx. 1 mockbuild mock 17 Mar 22 04:13 libpvode.so -> libpvode.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 785680 Mar 22 04:13 libpvode.so.1.0.0 -rw-r--r--. 1 mockbuild mock 2132990 Mar 22 04:07 libpvpre.a lrwxrwxrwx. 1 mockbuild mock 17 Mar 22 04:13 libpvpre.so -> libpvpre.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 367400 Mar 22 04:13 libpvpre.so.1.0.0 + make -j2 python make -C tools/pylib python3 make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib' PY=python3 make -C _boutcore_build pseudoinstall make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build' Generating boutcore.pyx Generating setup.py Generating helper.cxx Generating helper.h Generating resolve_enum.pxd resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied Generating boutcpp.pxd warning: resolve_enum.pxd:49:25: 'deflt' redeclared warning: resolve_enum.pxd:189:28: 'Standard' redeclared warning: resolve_enum.pxd:223:19: 'Standard' redeclared Compiling boutcore.pyx because it changed. [1/1] Cythonizing boutcore.pyx running build_ext building 'boutcore' extension creating build creating build/temp.linux-x86_64-cpython-311 mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.11 -c boutcore.cpp -o build/temp.linux-x86_64-cpython-311/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5, from boutcore.cpp:1050: /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx:30, from boutcore.cpp:1030: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from boutcore.cpp:1024: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ boutcore.cpp: At global scope: boutcore.cpp:25815:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 25815 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: boutcore.cpp:50750:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 50750 | return __pyx_r; | ^~~~~~~ boutcore.cpp:50393:12: note: ‘__pyx_r’ was declared here 50393 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_8boutcore_44bracket(_object*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’ at boutcore.cpp:43784:41: boutcore.cpp:43860:64: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 43860 | __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2642, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’: boutcore.cpp:52261:18: note: ‘__pyx_r’ was declared here 52261 | BRACKET_METHOD __pyx_r; | ^~~~~~~ mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.11 -c boutexception_helper.cxx -o build/temp.linux-x86_64-cpython-311/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.11 -c helper.cxx -o build/temp.linux-x86_64-cpython-311/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ creating build/lib.linux-x86_64-cpython-311 mpic++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/boutcore.o build/temp.linux-x86_64-cpython-311/boutexception_helper.o build/temp.linux-x86_64-cpython-311/helper.o -L/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/openmpi/lib -L/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib -L/usr/lib64 -lm -lbout++ -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes copying build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -> cp boutcore*.so .. make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build' make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib' ++ pwd + export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib + make -j2 -C manual html make: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual' cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2162 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2213 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2220 of file 'Doxyfile' has become obsolete. 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directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf Searching for files in directory 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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvode.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvspgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvspgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/iterativ.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/iterativ.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnlmath.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnlmath.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnltyps.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnltyps.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/nvector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/nvector.h... 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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_data.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_data.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgroup.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgroup.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldperp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldperp.cxx... Reading /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/gen_fieldops.py... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/gen_fieldops.py... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/generated_fieldops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/generated_fieldops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/globalfield.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/globalfield.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/initialprofiles.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/initialprofiles.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vecops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vecops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/where.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/where.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/datafile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/datafile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/dataformat.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/dataformat.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... 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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/fft_fftw.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/fft_fftw.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/lapack_routines.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/lapack_routines.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... 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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... 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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_standard.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_standard.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromfile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromfile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromoptions.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromoptions.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/difops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/difops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/fv_ops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/fv_ops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/bilinear.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/bilinear.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/interpolation_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/interpolation_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/mesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/mesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/surfaceiter.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/surfaceiter.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for const vector< int > NcFormat::getSize(const string &var) Possible candidates: 'virtual const std::vector< int > DataFormat::getSize(const char *var)=0' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual const std::vector< int > DataFormat::getSize(const std::string &var)=0' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'const std::vector< int > EmptyFormat::getSize(const char *var)' at line 46 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'const std::vector< int > EmptyFormat::getSize(const std::string &var)' at line 47 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'const std::vector< int > H5Format::getSize(const char *var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > H5Format::getSize(const std::string &var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > Ncxx4::getSize(const char *var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'const std::vector< int > Ncxx4::getSize(const std::string &var) override' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'const vector< int > PncFormat::getSize(const char *var) override' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'const vector< int > PncFormat::getSize(const std::string &var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:659: warning: no uniquely matching class member found for bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:715: warning: no uniquely matching class member found for bool NcFormat::read(char *var, const string &name, int n) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:756: warning: no uniquely matching class member found for bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:834: warning: no uniquely matching class member found for bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:879: warning: no uniquely matching class member found for bool NcFormat::write(char *var, const string &name, int n) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:941: warning: no uniquely matching class member found for bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1043: warning: no uniquely matching class member found for bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1089: warning: no uniquely matching class member found for bool NcFormat::read_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1130: warning: no uniquely matching class member found for bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1212: warning: no uniquely matching class member found for bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1260: warning: no uniquely matching class member found for bool NcFormat::write_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1335: warning: no uniquely matching class member found for bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'template < Args > BaseType * Factory< BaseType, TypeCreator >::create(const std::string &name, Args &&... args)' at line 57 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx 'static LaplaceXZ * LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE)' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx 'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx 'static Mesh * Mesh::create(Options *opt=nullptr)' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx 'static Solver * Solver::create(Options *opts=nullptr)' at line 308 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'static Solver * Solver::create(const SolverType &type, Options *opts=nullptr)' at line 311 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'Interpolation * InterpolationFactory::create(Mesh *mesh)' at line 49 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr)' at line 50 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(const std::string &name, Options *options=nullptr, Mesh *mesh=nullptr)' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'static Laplacian * Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 212 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1229: warning: no matching class member found for Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string ®ion) Possible candidates: 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY")' at line 184 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1244: warning: no matching class member found for Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 189 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 191 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 193 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 195 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1265: warning: no matching class member found for Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 198 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 203 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 208 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 213 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx:59: warning: no matching class member found for STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const Possible candidates: 'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 662 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx 'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 669 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx .cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/range.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/constants.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deprecated.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deriv_store.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/expr.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/field_visitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexy.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invertable_operator.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/macro_for_each.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/monitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/openmpwrap.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/petsclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rkscheme.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rvec.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/scorepwrapper.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/slepclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/snb.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solverfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/expressionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/gettext.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/range.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/timer.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/type_name.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uncopyable.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uuid.h... Genersh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' ating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx... 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Generating docs for fil/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' e /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/mesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx... Generating docs for file /b/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' uilddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/surfaceiter.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/timer.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/type_name.cxx... Generating docs for file /builddir//builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx:385: warning: Unsupported xml/html tag found /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AdamsBashforthSolver... Generating docs for compound Add... Generating docs for compound ArkodeSolver... Generating docs for compound Array... Generating docs for compound ArrayData... Generating docs for compound asExpr... Generating docs for compound asExpr< double >... Generating docs for compound asExpr< Field3D >... Generating docs for compound asExpr< float >... Generating docs for compound asExpr< int >... Generating docs for compound Bilinear... Generating docs for compound BinaryExpr... Generating docs for compound BinaryResult... Generating docs for compound BoundaryConstGradient... Generating docs for compound BoundaryConstLaplace... Generating docs for compound BoundaryDirichlet... Generating docs for compound BoundaryDirichlet_2ndOrder... Generating docs for compound BoundaryDirichlet_4thOrder... Generating docs for compound BoundaryDirichlet_O3... 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Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' EmptyFormat... Generating docs for compound enumWrapper... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAbs... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldCos... 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Generating docs for compound LaplaceMultigrid... Generating docs for compound LaplaceMumps... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePDD... Generating docs for nested compound LaplacePDD::PDD_data... Generating docs for compound LaplacePetsc... Generating docs for compound LaplaceSerialBand... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceShoot... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for nested compound LaplaceXY::LaplaceXYMonitor... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZcyclic... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating docs for compound LegacyModel... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound Matrix... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating d/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' ocs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MonotonicHermiteSpline... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound Multigrid1DP... Generating docs for compound Multigrid2DPf1D... Generating docs for compound MultigridAlg... Generating docs for compound MultigridSerial... Generating docs for compound multiostream... Generating docs for compound multioutbuf... Generating docs for compound multioutbuf_init... Generating docs for compound Multiply... Generating docs for compound NcFormat... Generating docs for compound Ncxx4... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::OptionValue... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParDerivFactory... Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscSolver... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound PncFormat... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations... Generating docs for compound PromoteType... Generating docs for compound PvodeSolver... Generating docs for compound RangeIterator... Generating docs for compound Region... Generating docs for compound RegionStats... Generating docs for compound RegisterInFactory... Generating docs for compound RegisterInFactory< Solver, DerivedType >... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generating docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer... Generating docs for compound Uncopyable... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating concept documentation... Generating namespace index... Generating docs for namespace bout Generating docs for compound bout::HeatFluxSNB... Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for compound bout::experimental::OptionsNetCDF... Generating docs for namespace bout::fft Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::Invertab/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx:385: warning: Unsupported xml/html tag found leOperator... Generating docs for namespace bout::utils Generating docs for compound bout::utils::_Unique_if... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual... Generating docs for compound bout::utils::details::StaticCastOrThrow... Generating docs for compound bout::utils::details::ToString... Generating docs for namespace FV Generating docs for compound FV::Fromm... Generating docs for compound FV::MC... Generating docs for compound FV::MinMod... Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for namespace gen_fieldops Generating docs for compound gen_fieldops::Field... Generating docs for namespace pvode Generating docs for compound pvode::bandmat_type... Generating docs for compound pvode::CVodeMemRec... Generating docs for compound pvode::machenv_type... Generating docs for compound pvode::nvec_type... Generating docs for compound pvode::pvbbddata_type... Generating docs for compound pvode::SpgmrMemRec... Generating docs for namespace SI Generating docs for namespace std Generating docs for compound std::hash< uuids::uuid >... Generating docs for namespace uuids Generating docs for compound uuids::basic_uuid_random_generator... Generating docs for compound uuids::uuid... Generating docs for compound uuids::uuid_name_generator... Generating docs for compound uuids::uuid_time_generator... Generating docs for namespace uuids::detail Generating docs for compound uuids::detail::sha1... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils::_Unique_if< T[N]> Generating XML output for class AdamsBashforthSolver Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class pvode::bandmat_type Generating XML output for class uuids::basic_uuid_random_generator Generating XML output for class Bilinear Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class Boundar/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' yFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet Generating XML output for class BoundaryOpPar_dirichlet_interp Generating XML output for class BoundaryOpPar_dirichlet_O3 Generating XML output for class BoundaryOpPar_neumann Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class Coordinates Generating XML output for class pvode::CVodeMemRec Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class Datafile Generating XML output for class DataFormat Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Generating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class EmptyFormat Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAbs Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldCos Generating XML output for class FieldCosh Generating XML output for class FieldData Generating XML output for class FieldErf Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generatin/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' g XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNull Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldSin Generating XML output for class FieldSinh Generating XML output for class FieldSqrt Generating XML output for class FieldTanh Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldVisitor Generating XML output for class FormatFactory Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class H5Format Generating XML output for class std::hash< uuids::uuid > Generating XML output for class bout::HeatFluxSNB Generating XML output for class HermiteSpline Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class BoundaryRegionPar::IndexPoint Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class Interpolation Generating XML output for class InterpolationFactory Generating XML output for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParCR Generating XML output for class bout::utils::details::IsEqual Generating XML output for class KarniadakisSolver Generating XML output for class Lagrange4pt Generating XML output for class LaplaceCyclic Generating XML output for class LaplaceFactory Generating XML output for class LaplaceMultigrid Generating XML output for class LaplaceMumps Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePDD Generating XML output for class LaplacePetsc Generating XML output for class LaplaceSerialBand Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceShoot Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXY::LaplaceXYMonitor Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZcyclic Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class LegacyModel Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class pvode::machenv_type Generating XML output for class Matrix Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class MonotonicHermiteSpline Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class Multigrid1DP Generating XML output for class Multigrid2DPf1D Generating XML output for class MultigridAlg Generating XML output for class MultigridSerial Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class NcFormat Generating XML output for class Ncxx4 Generating XML output for class pvode::nvec_type Generating XML output for c/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' lass OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::experimental::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Options::OptionValue Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for class ParDerivFactory Generating XML output for class ParseException Generating XML output for class LaplacePDD::PDD_data Generating XML output for class PetscLib Generating XML output for class PetscSolver Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class PncFormat Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class pvode::pvbbddata_type Generating XML output for class PvodeSolver Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class RegisterInFactory Generating XML output for class RegisterInFactory< Solver, DerivedType > Generating XML output for class registerMethod Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetrics Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class uuids::detail::sha1 Generating XML output for class ShiftedMetric Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class pvode::SpgmrMemRec Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class stencil Generating XML output for class FV::Stencil1D Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class uuids::uuid Generating XML output for class uuids::uuid_name_generator Generating XML output for class uuids::uuid_time_generator Generating XML output for class Datafile::VarStr Generating XML output for class Solver::VarStr Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for namespace @110 Generating XML output for namespace @111 Generating XML output for namespace @125 Generating XML output for namespace @178 Generating XML output for namespace @179 Generating XML output for namespace @180 Generating XML output for namespace @192 Generating XML output for namespace @207 Generating XML output for namespace @208 Generating XML output for namespace @210 Generating XML output for namespace @212 Generating XML output for namespace @214 Generating XML output for n/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found amespace @216 Generating XML output for namespace @218 Generating XML output for namespace @220 Generating XML output for namespace @222 Generating XML output for namespace @224 Generating XML output for namespace @226 Generating XML output for namespace @228 Generating XML output for namespace @230 Generating XML output for namespace @240 Generating XML output for namespace @245 Generating XML output for namespace @247 Generating XML output for namespace @249 Generating XML output for namespace @252 Generating XML output for namespace @256 Generating XML output for namespace @258 Generating XML output for namespace @262 Generating XML output for namespace @5 Generating XML output for namespace bout Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::experimental Generating XML output for namespace bout::fft Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for namespace uuids Generating XML output for namespace uuids::detail Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file bout_enum_class.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file deprecated.hxx Generating XML output for file deriv_store.hxx Generating XML output for file expr.hxx Generating XML output for file field_visitor.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file format.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file griddata.hxx Generating XML output for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file slepclib.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file uuid.h Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file boutmain.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file datafile.hxx/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' Generating XML output for file dataformat.hxx Generating XML output for file dcomplex.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldperp.hxx Generating XML output for file globals.hxx Generating XML output for file gyro_average.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_factory.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file mask.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file options.hxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file band.h Generating XML output for file cvdiag.h Generating XML output for file cvode.h Generating XML output for file cvspgmr.h Generating XML output for file iterativ.h Generating XML output for file llnlmath.h Generating XML output for file llnltyps.h Generating XML output for file nvector.h Generating XML output for file pvbbdpre.h Generating XML output for file smalldense.h Generating XML output for file spgmr.h Generating XML output for file vector.h Generating XML output for file smoothing.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file where.hxx Generating XML output for file bout++-time.cxx Generating XML output for file bout++-time.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fieldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file datafile.cxx Generating XML output for file dataformat.cxx Generating XML output for file formatfactory.cxx Generating XML output for file formatfactory.hxx Generating XML output for file emptyformat.hxx Generating XML output for file h5_format.cxx Generating XML output for file h5_format.hxx Generating XML output for file nc_format.cxx Generating XML output for file nc_format.hxx Generating XML output for file ncxx4.cxx Generating XML output for file ncxx4.hxx Generating XML output for file pnetcdf.cxx Generating XML output for file pnetcdf.hxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' Generating XML output for file mumps_laplace.cxx Generating XML output for file mumps_laplace.hxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pdd.cxx Generating XML output for file pdd.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file shoot_laplace.cxx Generating XML output for file shoot_laplace.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacefactory.cxx Generating XML output for file laplacefactory.hxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file parderiv_factory.cxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file interpolation.cxx Generating XML output for file bilinear.cxx Generating XML output for file hermite_spline.cxx Generating XML output for file interpolation_factory.cxx Generating XML output for file lagrange_4pt.cxx Generating XML output for file monotonic_hermite_spline.cxx Generating XML output for file mesh.cxx Generating XML output for file meshfactory.cxx Generating XML output for file meshfactory.hxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmetric.cxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file adams_bashforth.cxx Generating XML output for file adams_bashforth.hxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file karniadakis.cxx Generating XML output for file karniadakis.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file cashkarp.hxx Generating XML output for file rk4simple.cxx Generating XML output for file rk4simple.hxx Generating XML output for file rkf34.cxx Generating XML output for file rkf34.hxx Generating XML output for file rkf45.cxx Generating XML output for file rkf45.hxx Generating XML output for file rkgeneric.cxx Generating XML output for file rkgeneric.hxx Generating XML output for file rkscheme.cxx Generating XML output for file rkschemefactory.cxx Generating XML output for file rkschemefactory.hxx Generating XML output for file slepc.cxx Generating XML output for file slepc.hxx Generating XML output for file snes.cxx Generating XML output for file snes.hxx Generating XML output for file split-rk.cxx Generating XML output for file split-rk.hxx Generating XML output for file solver.cxx Generating XML output for file solverfactory.cxx Generating XML output for file bout_types.cxx Generating XML output for file boutcomm.cxx Generating XML output for file boutexception.cxx Generating XML output for file derivs.cxx Generating XML output for file expressionparser.cxx Generating XML output for file msg_stack.cxx Generating XML output for file options.cxx Generating XML output for file optionparser.hxx Generating XML output for file options_ini.cxx Generating XML output for file options_ini.hxx Generating XML output for file options_netcdf.cxx Generating XML output for file optionsreader.cxx Generating XML output for file output.cxx Generating XML output for file petsclib.cxx Generating XML output for file range.cxx Generating XML output for file slepclib.cxx Generating XML output for file timer.cxx Generating XML output for file type_name.cxx Generating XML output for file utils.cxx Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 18676/65536 hits=185173 misses=19455 symbol lookup cache used 21545/65536 hits=227687 misses=21545 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/ Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 41 source files that are out of date updating environment: [new config] 41 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata reading sources... [ 4%] _apidoc/boututils No mlab available reading sources... [ 7%] _apidoc/zoidberg reading sources... [ 9%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 14%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 19%] developer_docs/file_io reading sources... [ 21%] developer_docs/git_basics reading sources... 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[100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised: No module named 'boututils.contour' WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them looking for now-outdated files... /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/bout_options.rst:533: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:416: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:417: WARNING: Block quote ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target. /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:445: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] _apidoc/boutdata writing output... [ 4%] _apidoc/boututils writing output... [ 7%] _apidoc/zoidberg writing output... [ 9%] api_reference writing output... [ 12%] developer_docs/code_layout writing output... [ 14%] developer_docs/contributing writing output... [ 17%] developer_docs/data_types writing output... [ 19%] developer_docs/file_io writing output... [ 21%] developer_docs/git_basics writing output... [ 24%] developer_docs/mesh writing output... [ 26%] developer_docs/natural_language writing output... [ 29%] developer_docs/performance_profiling writing output... [ 31%] index writing output... [ 34%] user_docs/BOUT_Gradperp_op writing output... [ 36%] user_docs/advanced_install writing output... [ 39%] user_docs/algebraic_operators writing output... [ 41%] user_docs/boundary_options writing output... [ 43%] user_docs/bout_functions_for_physics writing output... [ 46%] user_docs/bout_options writing output... [ 48%] user_docs/coordinates writing output... 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[100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: '../_breathe_autogen/file/emptyformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: '../_breathe_autogen/file/pdd_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: '../_breathe_autogen/file/pdd_8cxx' generating indices... genindex /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/serial_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: '../_breathe_autogen/file/serial_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:265: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:277: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:285: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:294: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:299: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:305: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:311: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:317: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:321: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:325: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:329: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:333: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:336: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:340: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:344: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:348: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:350: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: undefined label: 'sec-derivatives' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:359: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:366: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:370: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: '../_breathe_autogen/file/stencils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] mesh:maxregionblocksize ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] mesh:maxregionblocksize ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] BOUT.inp ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] BOUT.inp ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/griddata_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: '../_breathe_autogen/file/dataformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 7] restart.redistribute -------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7] restart.redistribute -------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If full function ref: Error when parsing function declaration. If the function has no return type: Invalid C++ declaration: Expected end of definition or ;. [error at 27] REGISTER_DERIVATIVE(DDX_C2)() ---------------------------^ If the function has a return type: Error in declarator If declarator-id with parameters-and-qualifiers: Invalid C++ declaration: Expected identifier in nested name. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If parenthesis in noptr-declarator: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ If declarator-id: Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:423: WARNING: Unparseable C++ cross-reference: '-DBOUT_IGNORE_CONDA_ENV=ON' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:436: WARNING: Failed to create a cross reference. A title or caption not found: 'sec-install-bout' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 8] examples/invertable_operator --------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8] examples/invertable_operator --------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: 'tab-snb-options' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:659: WARNING: Unparseable C++ cross-reference: '"zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:119: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:464: WARNING: Unparseable C++ cross-reference: 'https://en.wikipedia.org/wiki/Universally_unique_identifier' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:366: WARNING: Unparseable C++ cross-reference: 'predictor = false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 10] predictor = false ----------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 10] predictor = false ----------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:960: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 13%] figs/memory.png copying images... [ 17%] figs/fluid_norm_mc.png copying images... [ 21%] figs/diffStencils.png copying images... [ 26%] figs/topology_cross_section.png copying images... [ 30%] figs/topology_schematic.png copying images... [ 34%] figs/boutmesh-comms.png copying images... [ 39%] figs/grid_gen.png copying images... [ 43%] figs/zoidberg/elliptic_grid.png copying images... [ 47%] figs/zoidberg/poincare.png copying images... [ 52%] figs/5PointStencilMesh.png copying images... [ 56%] figs/5PointStencilMeshWithStencil.png copying images... [ 60%] figs/5PointStencilMatrix.png copying images... [ 65%] figs/5PointStencilGlobalIndices.png copying images... [ 69%] figs/par_laplace.png copying images... [ 73%] figs/snb-sinusoidal.png copying images... [ 78%] figs/snb-step.png copying images... [ 82%] figs/interchange_inst_test.png copying images... [ 86%] figs/sod_result.png copying images... [ 91%] figs/folder_tree.png copying images... [ 95%] figs/stagLocations.png copying images... [100%] figs/init_balloon.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 164 warnings. The HTML pages are in html. Documentation available in file:///builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/html/index.html make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual' + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/BOUT++-v4.4.2 ++ unset MPI_COMPILER ++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jWOK7b + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS ~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2 + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v4.4.2 + for mpi in mpich openmpi + pushd build_mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 # Pre-install commands follow. # Normal commands follow. /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//{,pvode,bout/sys,bout/invert} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib} /usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++/ /usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//pvode/ /usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//bout/ /usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//bout/sys/ /usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//bout/invert/ /usr/bin/install -c lib/libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib /usr/bin/install -c lib/libpvode.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib /usr/bin/install -c lib/libpvpre.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib rm -f /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so ln -s libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so ln -s libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so /usr/bin/install -c bin/bout-config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin /usr/bin/install -c bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin /usr/bin/install -c -m 644 tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/idllib/README /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 make.config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++/ for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/$mo; done # Post-install commands follow. sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i '26 i RELEASED = yes' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config + sed -i '27 i RELEASED = 4.4.2-5.fc39' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/include/mpich-x86_64/bout++/make.config + rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++ + popd ~/build/BUILD/BOUT++-v4.4.2 + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/modulefiles/bout++ + cat + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + pushd build_openmpi ~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 # Pre-install commands follow. # Normal commands follow. /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//{,pvode,bout/sys,bout/invert} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib} /usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++/ /usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//pvode/ /usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//bout/ /usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//bout/sys/ /usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//bout/invert/ /usr/bin/install -c lib/libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c lib/libpvode.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c lib/libpvpre.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib rm -f /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so ln -s libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so ln -s libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so /usr/bin/install -c bin/bout-config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin /usr/bin/install -c bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin /usr/bin/install -c -m 644 tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/idllib/README /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 make.config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++/ for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/$mo; done # Post-install commands follow. sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i '26 i RELEASED = yes' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config + sed -i '27 i RELEASED = 4.4.2-5.fc39' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/include/openmpi-x86_64/bout++/make.config + rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++ + popd ~/build/BUILD/BOUT++-v4.4.2 + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/modulefiles/bout++ + cat + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ~/build/BUILD/BOUT++-v4.4.2/tools/pylib ~/build/BUILD/BOUT++-v4.4.2 ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd tools/pylib + for d in bout_runners zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/bout_runners + cp bout_runners/__init__.py bout_runners/bout_runners.py /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/bout_runners/ + for d in bout_runners zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/zoidberg + cp zoidberg/__init__.py zoidberg/boundary.py zoidberg/field.py zoidberg/fieldtracer.py zoidberg/grid.py zoidberg/plot.py zoidberg/poloidal_grid.py zoidberg/progress.py zoidberg/rzline.py zoidberg/test_field.py zoidberg/test_fieldtracer.py zoidberg/test_grid.py zoidberg/test_poloidal_grid.py zoidberg/test_rzline.py zoidberg/test_zoidberg.py zoidberg/zoidberg.py /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/zoidberg/ ~/build/BUILD/BOUT++-v4.4.2 + popd ++ head -n1 ++ ls build_mpich/manual build_openmpi/manual -d + mandir=build_mpich/manual + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/share/doc/bout++/ + rm -rf build_mpich/manual/html/.buildinfo + rm -rf build_mpich/manual/html/.doctrees + rm -rf build_mpich/manual/html/_sources + cp -r build_mpich/manual/html /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/share/doc/bout++/ + for mpi in mpich openmpi + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/ + install build_mpich/tools/pylib/boutcore.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/ + for mpi in mpich openmpi + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/ + install build_openmpi/tools/pylib/boutcore.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/ + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 libbout + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.4.2-5.fc39 --unique-debug-suffix -4.4.2-5.fc39.x86_64 --unique-debug-src-base bout++-4.4.2-5.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v4.4.2 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so.4.4.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so.4.4.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutcore.cpython-311-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutcore.cpython-311-x86_64-linux-gnu.so original debug info size: 191808kB, size after compression: 154112kB /usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. 17769 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib/python3.11/site-packages/bout_runners/bout_runners.py is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.AhfoWV + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v4.4.2 + fail=1 + for mpi in mpich openmpi + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2 #!/bin/bash make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + pushd build_mpich + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest + make -j2 build-check make --no-print-directory -C tests/integrated make --no-print-directory -C tests/MMS Compiling test_yupdown.cxx Compiling wave.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_yupdown Compiling testVec.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Compiling wave.cxx Linking testVec In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Linking test-twistshift Compiling fci_mms.cxx Compiling test-twistshift.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking fci_mms Linking test-twistshift Compiling diffusion.cxx Compiling fuu.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/fuu.a Compiling bar.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking cyto Adding bar.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/bar.a Compiling subdirs.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_extras.cxx Linking subdirs In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from test_extras.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_variant.cxx Linking test_stopCheck In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_variant.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_utils.cxx In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_utils.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_solver.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_solver Compiling sys/test_type_name.cxx Compiling test_snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_type_name.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_timer.cxx In file included from ../../include/bout/sys/timer.hxx:11, from sys/test_timer.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_timer.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_snb Compiling sys/test_range.cxx Compiling test_smooth.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_output.cxx Linking test_smooth Compiling test_restarting.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_restarting Compiling sys/test_optionsreader.cxx Compiling test-restart-io.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_optionsreader.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling test-restart-io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling sys/test_options_netcdf.cxx Compiling test_region_iterator.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_netcdf.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_region_iterator Compiling test_naulin_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options_fields.cxx Linking test_naulin_laplace In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_fields.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_multigrid_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_multigrid_laplace Compiling sys/test_options.cxx Compiling test-laplacexy.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-laplacexy.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-laplacexy-short Compiling test_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ test_laplace.cxx: In function 'int main(int, char**)': test_laplace.cxx:23:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 23 | Field3D flag0 = invert_laplace(input, 0); | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:24:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 24 | Field3D flag3 = invert_laplace(input, 3); | ~~~~~~~~~~~~~~^~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:27:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 27 | Field3D flag0a = invert_laplace(input, 0, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:28:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 28 | Field3D flag3a = invert_laplace(input, 3, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:31:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 31 | Field3D flag0ac = invert_laplace(input, 0, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:32:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 32 | Field3D flag3ac = invert_laplace(input, 3, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:35:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 35 | Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:36:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 36 | Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:45:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 45 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:47:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 47 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:52:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 52 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:54:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 54 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:59:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 59 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:61:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 61 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:67:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 67 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:69:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 69 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Linking test_laplace Compiling test_io_hdf5.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io_hdf5.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io_hdf5 Compiling test_io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_msg_stack.cxx In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_msg_stack.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390: sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()': sys/test_msg_stack.cxx:77:33: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations] 77 | EXPECT_EQ(msg_stack.setPoint(), i); | ~~~~~~~~~~~~~~~~~~^~ ../../include/msg_stack.hxx:76:7: note: declared here 76 | int setPoint(); ///< get a message point | ^~~~~~~~ Linking test_io Compiling test_invpar.cxx Compiling sys/test_expressionparser.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_expressionparser.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_invpar Compiling invertable_operator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_boutexception.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_boutexception.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling src/test_bout++.cxx Linking invertable_operator In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from src/test_bout++.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_interpolate.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_interpolate Compiling 2fluid.cxx Compiling solver/test_solverfactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solverfactory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling solver/test_solver.cxx Compiling test_gyro.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solver.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_gyro Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_fieldfactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_fieldfactory Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_fakesolver.cxx Linking 2fluid In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_fakesolver.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_delp2.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_paralleltransform.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_delp2 Compiling test_cyclic.cxx Compiling mesh/test_mesh.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_mesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_cyclic Compiling test-coordinates-initialization.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-coordinates-initialization Compiling mesh/test_interpolation.cxx Compiling command-args.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_interpolation.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking command-args Compiling test-bout-override-default-option.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from test-bout-override-default-option.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-bout-override-default-option Compiling mesh/test_coordinates.cxx Compiling test_beuler.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_coordinates.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_beuler.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315, from /usr/include/mpich-x86_64/petsc/petscsys.h:47, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from ../../../include/bout/petsclib.hxx:52, from test_beuler.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boutmesh.cxx Linking test_beuler In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boutmesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/parallel/test_shiftedmetric.cxx In file included from /usr/include/c++/13/list:65, from ../../include/utils.hxx:42, from ../../include/field.hxx:44: In member function 'std::__cxx11::_List_base, std::allocator >, std::allocator, std::allocator > > >::_M_get_size() const', inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::_M_node_count() const' at /usr/include/c++/13/bits/stl_list.h:728:33, inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::size() const' at /usr/include/c++/13/bits/stl_list.h:1150:29, inlined from 'BoundaryFactoryTest_CreateTestBoundaryPositionalArguments_Test::TestBody()' at mesh/test_boundary_factory.cxx:81:3: /usr/include/c++/13/bits/stl_list.h:480:59: warning: potential null pointer dereference [-Wnull-dereference] 480 | size_t _M_get_size() const { return _M_impl._M_node._M_size; } | ^~~~~~~ In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from mesh/parallel/test_shiftedmetric.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In member function 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::empty() const', inlined from 'BoundaryFactoryTest_CreateTestBoundaryKeywords_Test::TestBody()' at mesh/test_boundary_factory.cxx:93:3: /usr/include/c++/13/bits/stl_list.h:1144:38: warning: potential null pointer dereference [-Wnull-dereference] 1144 | { return this->_M_impl._M_node._M_next == &this->_M_impl._M_node; } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ Compiling mesh/data/test_gridfromoptions.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert/test_fft.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from invert/test_fft.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from invert/test_fft.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_mask.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_mask.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_interpolation_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_interpolation_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_derivs.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from include/test_derivs.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_derivs.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_cyclic_reduction.cxx In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_traits.cxx Compiling include/bout/test_template_combinations.cxx In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_traits.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_region.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_monitor.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_monitor.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_macro_for_each.cxx Compiling include/bout/test_generic_factory.cxx Compiling include/bout/test_deriv_store.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_assert.cxx Compiling include/bout/test_array.cxx Compiling field/test_where.cxx In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_where.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector3d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector3d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector2d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector2d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_initialprofiles.cxx In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_initialprofiles.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_fieldperp.cxx Compiling field/test_fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_fieldgroup.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field3d.cxx Compiling field/test_field2d.cxx Compiling field/test_field.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 538 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:538:19: note: use reference type to prevent copying 538 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 581 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:581:19: note: use reference type to prevent copying 581 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 623 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:623:19: note: use reference type to prevent copying 623 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 668 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:668:19: note: use reference type to prevent copying 668 | for (const auto index : test_indices) { | ^~~~~ | & Compiling gtest-all.o Compiling gmock-all.o Compiling bout_test_main.o In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from bout_test_main.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from bout_test_main.cxx:3: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking bout_test_main.a Linking tests /usr/bin/ld: /tmp/ccxTJ4XH.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' + SEGFAULT_SIGNALS=segv + make check Linking tests /usr/bin/ld: /tmp/ccTrJ5Ls.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' Running unit test Running main() from bout_test_main.cxx [==========] Running 1529 tests from 103 test suites. [----------] Global test environment set-up. [----------] 2 tests from ParseCommandLineArgsDeathTest [----------] 2 tests from ParseCommandLineArgsDeathTest (7 ms total) [----------] 10 tests from FieldTest (1 ms total) [----------] 78 tests from Field2DTest (27 ms total) [----------] 126 tests from Field3DTest (22 ms total) [----------] 47 tests from FieldFactoryCreationTest/0 (10 ms total) [----------] 47 tests from FieldFactoryCreationTest/1 (9 ms total) [----------] 28 tests from FieldFactoryTest (5 ms total) [----------] 6 tests from FieldFactoryCreateAndTransformTest (1 ms total) [----------] 28 tests from FieldGroupTest (0 ms total) [----------] 101 tests from FieldPerpTest (16 ms total) [----------] 10 tests from InitialProfileTest (1 ms total) [ RUN ] Vector2DTest.ApplyBoundaryString Option input:transform_from_field_aligned = 1 (default) [----------] 46 tests from Vector2DTest (5 ms total) [----------] 49 tests from Vector3DTest (6 ms total) [----------] 10 tests from WhereTest (1 ms total) [----------] 12 tests from ArrayTest (0 ms total) [----------] 4 tests from AssertTest (0 ms total) [----------] 25 tests from DerivativeStoreTest (4 ms total) [----------] 6 tests from GenericFactory (0 ms total) [----------] 3 tests from MacroForEachTest (0 ms total) [----------] 3 tests from MacroForEachFnTest (0 ms total) [----------] 2 tests from MonitorTest (0 ms total) [----------] 33 tests from RegionTest (5 ms total) [----------] 6 tests from RegionIndexConversionTest (0 ms total) [----------] 2 tests from RegionIndex2DTest (0 ms total) [----------] 2 tests from RegionIndex3DTest (0 ms total) [----------] 21 tests from RegionIndexTest/0 (0 ms total) [----------] 21 tests from RegionIndexTest/1 (0 ms total) [----------] 21 tests from RegionIndexTest/2 (0 ms total) [----------] 23 tests from FieldIndexTest/0 (0 ms total) [----------] 23 tests from FieldIndexTest/1 (0 ms total) [----------] 48 tests from IndexOffsetTest (1 ms total) [----------] 5 tests from TemplateCombinationsTest (0 ms total) [----------] 6 tests from BoutTraitsTest (0 ms total) [----------] 3 tests from CyclicReduction (0 ms total) [----------] 9 tests from InterpolationFactoryTest (1 ms total) [----------] 11 tests from MaskTest (2 ms total) [----------] 34 tests from GridFromOptionsTest (95 ms total) [----------] 9 tests from ShiftedMetricTest (1 ms total) [----------] 5 tests from BoundaryFactoryTest (0 ms total) [----------] 2 tests from BoutMeshTest (3 ms total) [----------] 4 tests from CoordinatesTest (1 ms total) [----------] 16 tests from Field3DInterpToTest (0 ms total) [----------] 8 tests from Field2DInterpToTest (0 ms total) [----------] 25 tests from MeshTest (1 ms total) [----------] 6 tests from ParallelTransformTest (0 ms total) [----------] 50 tests from SolverTest (16 ms total) [----------] 12 tests from SolverFactoryTest (0 ms total) [----------] 20 tests from ParseCommandLineArgs (0 ms total) [----------] 3 tests from PrintStartupTest (0 ms total) [----------] 4 tests from BoutInitialiseFunctions (0 ms total) [----------] 3 tests from BoutExceptionTest (2341 ms total) [----------] 1 test from BoutRhsFailTest (0 ms total) [----------] 2 tests from BoutParallelRhsFailTest (0 ms total) [----------] 1 test from BoutIterationFailTest (0 ms total) [----------] 29 tests from ExpressionParserTest (0 ms total) [----------] 1 test from ParseExceptionTest (0 ms total) [----------] 11 tests from MsgStackTest (0 ms total) [----------] 99 tests from OptionsTest (16 ms total) [----------] 12 tests from OptionsFieldTest (2 ms total) [----------] 13 tests from OptionsNetCDFTest (18 ms total) [----------] 20 tests from OptionsReaderTest (1 ms total) [----------] 20 tests from OutputTest (0 ms total) [----------] 25 tests from RangeTest (0 ms total) [----------] 13 tests from TimerTest (23 ms total) [----------] 6 tests from TypeNameTest (0 ms total) [----------] 14 tests from MatrixTest (0 ms total) [----------] 14 tests from TensorTest (0 ms total) [----------] 4 tests from Invert3x3Test (2 ms total) [----------] 13 tests from NumberUtilitiesTest (0 ms total) [----------] 18 tests from StringUtilitiesTest (0 ms total) [----------] 4 tests from FunctionTraitsTest (0 ms total) [----------] 3 tests from VariantTest (0 ms total) [----------] 5 tests from FirstX/DerivativesTest (1 ms total) [----------] 5 tests from FirstY/DerivativesTest (1 ms total) [----------] 6 tests from FirstZ/DerivativesTest (2 ms total) [----------] 2 tests from SecondX/DerivativesTest (0 ms total) [----------] 2 tests from SecondY/DerivativesTest (0 ms total) [----------] 3 tests from SecondZ/DerivativesTest (0 ms total) [----------] 1 test from FourthX/DerivativesTest (0 ms total) [----------] 1 test from FourthY/DerivativesTest (0 ms total) [----------] 1 test from FourthZ/DerivativesTest (0 ms total) [----------] 6 tests from UpwindX/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindY/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxX/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxY/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from X/FirstDerivativesInterfaceTest (1 ms total) [----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (1 ms total) [----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (1 ms total) [----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total) [----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total) [----------] 3 tests from Z/SecondDerivativesInterfaceTest (0 ms total) [----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total) [----------] 6 tests from X/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Y/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Z/UpwindDerivativesInterfaceTest (1 ms total) [----------] 5 tests from X/FluxDerivativesInterfaceTest (1 ms total) [----------] 5 tests from Y/FluxDerivativesInterfaceTest (1 ms total) [----------] 5 tests from Z/FluxDerivativesInterfaceTest (1 ms total) [----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total) [==========] 1529 tests from 103 test suites ran. (2697 ms total) [ PASSED ] 1529 tests. ======= Making 56 integrated tests ======== test-yupdown ✓ 0.011 s test-vec ✓ 0.010 s test-twistshift ✓ 0.009 s test-twistshift-staggered ✓ 0.008 s test-subdir ✓ 0.569 s test-stopCheck ✓ 0.009 s test-stopCheck-file ✓ 0.009 s test-squash S - all_tests => False test-solver ✓ 0.009 s test-snb ✓ 0.008 s test-smooth ✓ 0.008 s test-slepc-solver S - slepc => False test-restarting ✓ 0.008 s test-restart-io_hdf5 ✓ 0.008 s test-restart-io ✓ 0.008 s test-region-iterator ✓ 0.008 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 0.009 s test-multigrid_laplace ✓ 0.009 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 0.009 s test-laplace ✓ 0.008 s test-io_hdf5 ✓ 0.009 s test-io ✓ 0.009 s test-invpar ✓ 0.009 s test-invertable-operator ✓ 0.009 s test-interpolate ✓ 0.008 s test-interchange-instability ✓ 0.009 s test-initial S - not make => False test-include S - all_tests => False test-gyro ✓ 0.009 s test-griddata ✓ 0.008 s test-griddata-yboundary-guards ✓ 0.009 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 0.008 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 0.009 s test-delp2 ✓ 0.008 s test-cyclic ✓ 0.009 s test-coordinates-initialization ✓ 0.008 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 0.009 s test-collect S - all_tests => False test-code-style S - not make => False test-boutcore/simple-model S - not make => False test-boutcore/print S - not make => False test-boutcore/mms-ddz S - not make => False test-boutcore/legacy-model S - not make => False test-boutcore/collect S - not make => False test-boutcore/collect-staggered S - not make => False test-bout-override-default-option ✓ 0.009 s test-beuler ✓ 0.008 s test-attribs S - all_tests => False ======= All tests passed in 0.88 seconds ======= ======= Running 56 integrated tests ======== test-yupdown ✓ 0.472 s test-vec ✓ 1.497 s test-twistshift ✓ 0.434 s test-twistshift-staggered ✓ 0.436 s test-subdir ✓ 0.964 s test-stopCheck ✓ 0.022 s test-stopCheck-file ✓ 2.576 s test-squash S - all_tests => False test-solver ✓ 11.440 s test-snb ✓ 0.208 s test-smooth ✓ 2.112 s test-slepc-solver S - slepc => False test-restarting ✓ 3.221 s test-restart-io_hdf5 ✓ 1.662 s test-restart-io ✓ 3.614 s test-region-iterator ✓ 1.059 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 3.325 s test-multigrid_laplace ✓ 480.557 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 152.372 s test-laplace ✓ 3.796 s test-io_hdf5 ✓ 18.366 s test-io ✓ 35.935 s test-invpar ✓ 114.596 s test-invertable-operator ✓ 1.131 s test-interpolate ✓ 4.590 s test-interchange-instability ✓ 7.892 s test-initial ✓ 14.513 s test-include S - all_tests => False test-gyro ✓ 1.890 s test-griddata ✓ 0.416 s test-griddata-yboundary-guards ✓ 9.708 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 2.009 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 9.888 s test-delp2 ✓ 57.147 s test-cyclic ✓ 5.815 s test-coordinates-initialization ✓ 0.656 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 2.322 s test-collect S - all_tests => False test-code-style ✓ 0.050 s test-boutcore/simple-model ✓ 0.674 s test-boutcore/print ✓ 0.273 s test-boutcore/mms-ddz ✓ 0.258 s test-boutcore/legacy-model ✓ 0.658 s test-boutcore/collect ✓ 0.403 s test-boutcore/collect-staggered ✓ 0.401 s test-bout-override-default-option ✓ 0.053 s test-beuler ✓ 0.141 s test-attribs S - all_tests => False ======= All tests passed in 959.58 seconds ======= ======= Making 21 MMS tests ======== wave-1d ✓ 0.010 s wave-1d-y ✓ 0.009 s upwinding3 S - not make => False time S - all_tests => False time-petsc S - not make => False spatial/fci ✓ 0.009 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 0.009 s derivatives3 S - not make => False bracket S - not make => False advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 0.04 seconds ======= ======= Running 21 MMS tests ======== wave-1d ✓ 3.544 s wave-1d-y ✓ 4.119 s upwinding3 ✓ 1.222 s time S - all_tests => False time-petsc S - all_tests => False spatial/fci ✓ 4.320 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 12.445 s derivatives3 ✓ 0.763 s bracket ✓ 0.298 s advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 26.72 seconds ======= + popd ~/build/BUILD/BOUT++-v4.4.2 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2 ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + pushd build_openmpi + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j2 build-check make --no-print-directory -C tests/integrated make --no-print-directory -C tests/MMS Compiling wave.cxx Compiling test_yupdown.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_yupdown Compiling testVec.cxx Linking wave In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling wave.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking testVec Compiling test-twistshift.cxx Linking wave In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fci_mms.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-twistshift Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking fci_mms Compiling diffusion.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-twistshift Compiling fuu.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/fuu.a Compiling bar.cxx Linking cyto In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling subdirs.cxx Adding bar.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/bar.a Compiling test_extras.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from test_extras.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking subdirs Compiling test_stopCheck.cxx Compiling sys/test_variant.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_variant.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_utils.cxx Linking test_stopCheck In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_utils.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_solver.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_type_name.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_timer.cxx Linking test_solver In file included from ../../include/bout/sys/timer.hxx:11, from sys/test_timer.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_timer.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_snb.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_range.cxx Compiling sys/test_output.cxx Linking test_snb Compiling test_smooth.cxx Compiling sys/test_optionsreader.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_optionsreader.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_smooth Compiling test_restarting.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_restarting Compiling test-restart-io.cxx Compiling sys/test_options_netcdf.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_netcdf.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling test-restart-io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling sys/test_options_fields.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_fields.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_region_iterator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_region_iterator Compiling test_naulin_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_naulin_laplace Compiling test_multigrid_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_multigrid_laplace Compiling test-laplacexy.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-laplacexy.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-laplacexy-short Compiling test_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_msg_stack.cxx test_laplace.cxx: In function 'int main(int, char**)': test_laplace.cxx:23:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 23 | Field3D flag0 = invert_laplace(input, 0); | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:24:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 24 | Field3D flag3 = invert_laplace(input, 3); | ~~~~~~~~~~~~~~^~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:27:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 27 | Field3D flag0a = invert_laplace(input, 0, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:28:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 28 | Field3D flag3a = invert_laplace(input, 3, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:31:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 31 | Field3D flag0ac = invert_laplace(input, 0, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:32:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 32 | Field3D flag3ac = invert_laplace(input, 3, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:35:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 35 | Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:36:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 36 | Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:45:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 45 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:47:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 47 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:52:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 52 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:54:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 54 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:59:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 59 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:61:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 61 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:67:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 67 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:69:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 69 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_msg_stack.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390: sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()': sys/test_msg_stack.cxx:77:33: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations] 77 | EXPECT_EQ(msg_stack.setPoint(), i); | ~~~~~~~~~~~~~~~~~~^~ ../../include/msg_stack.hxx:76:7: note: declared here 76 | int setPoint(); ///< get a message point | ^~~~~~~~ Linking test_laplace Compiling test_io_hdf5.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io_hdf5.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_expressionparser.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_expressionparser.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io_hdf5 Compiling test_io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_boutexception.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_boutexception.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io Compiling test_invpar.cxx Compiling src/test_bout++.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from src/test_bout++.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_invpar Compiling invertable_operator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solverfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solverfactory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking invertable_operator Compiling test_interpolate.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solver.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solver.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_interpolate Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling test_gyro.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_gyro Compiling solver/test_fakesolver.cxx Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_fakesolver.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_paralleltransform.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_fieldfactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_fieldfactory Compiling mesh/test_mesh.cxx Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_mesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling mesh/test_interpolation.cxx Compiling test_delp2.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_interpolation.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_delp2 Compiling test_cyclic.cxx Compiling mesh/test_coordinates.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_coordinates.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boutmesh.cxx Linking test_cyclic In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boutmesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test-coordinates-initialization.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boundary_factory.cxx Linking test-coordinates-initialization Compiling command-args.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking command-args In file included from /usr/include/c++/13/list:65, from ../../include/utils.hxx:42, from ../../include/field.hxx:44: In member function 'std::__cxx11::_List_base, std::allocator >, std::allocator, std::allocator > > >::_M_get_size() const', inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::_M_node_count() const' at /usr/include/c++/13/bits/stl_list.h:728:33, inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::size() const' at /usr/include/c++/13/bits/stl_list.h:1150:29, inlined from 'BoundaryFactoryTest_CreateTestBoundaryPositionalArguments_Test::TestBody()' at mesh/test_boundary_factory.cxx:81:3: /usr/include/c++/13/bits/stl_list.h:480:59: warning: potential null pointer dereference [-Wnull-dereference] 480 | size_t _M_get_size() const { return _M_impl._M_node._M_size; } | ^~~~~~~ Compiling test-bout-override-default-option.cxx In member function 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::empty() const', inlined from 'BoundaryFactoryTest_CreateTestBoundaryKeywords_Test::TestBody()' at mesh/test_boundary_factory.cxx:93:3: /usr/include/c++/13/bits/stl_list.h:1144:38: warning: potential null pointer dereference [-Wnull-dereference] 1144 | { return this->_M_impl._M_node._M_next == &this->_M_impl._M_node; } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from test-bout-override-default-option.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/parallel/test_shiftedmetric.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from mesh/parallel/test_shiftedmetric.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-bout-override-default-option Compiling test_beuler.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_beuler.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315, from /usr/include/openmpi-x86_64/petsc/petscsys.h:47, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from ../../../include/bout/petsclib.hxx:52, from test_beuler.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/data/test_gridfromoptions.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_beuler Compiling invert/test_fft.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from invert/test_fft.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from invert/test_fft.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_mask.cxx Compiling include/test_interpolation_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_mask.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_interpolation_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_derivs.cxx Compiling include/test_cyclic_reduction.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from include/test_derivs.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_derivs.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_traits.cxx In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_traits.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_template_combinations.cxx Compiling include/bout/test_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_region.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_monitor.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_monitor.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_macro_for_each.cxx Compiling include/bout/test_generic_factory.cxx Compiling include/bout/test_deriv_store.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_assert.cxx Compiling include/bout/test_array.cxx Compiling field/test_where.cxx In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_where.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector3d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector3d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector2d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector2d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_initialprofiles.cxx In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_initialprofiles.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_fieldperp.cxx Compiling field/test_fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_fieldgroup.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field3d.cxx Compiling field/test_field2d.cxx Compiling field/test_field.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 538 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:538:19: note: use reference type to prevent copying 538 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 581 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:581:19: note: use reference type to prevent copying 581 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 623 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:623:19: note: use reference type to prevent copying 623 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 668 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:668:19: note: use reference type to prevent copying 668 | for (const auto index : test_indices) { | ^~~~~ | & Compiling gtest-all.o Compiling gmock-all.o Compiling bout_test_main.o In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from bout_test_main.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from bout_test_main.cxx:3: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking bout_test_main.a Linking tests /usr/bin/ld: /tmp/ccJ7Q8lO.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' + SEGFAULT_SIGNALS=segv + make check Linking tests /usr/bin/ld: /tmp/ccGnKMi0.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' Running unit test Running main() from bout_test_main.cxx [==========] Running 1529 tests from 103 test suites. [----------] Global test environment set-up. [----------] 2 tests from ParseCommandLineArgsDeathTest [----------] 2 tests from ParseCommandLineArgsDeathTest (7 ms total) [----------] 10 tests from FieldTest (1 ms total) [----------] 78 tests from Field2DTest (531 ms total) [----------] 126 tests from Field3DTest (24 ms total) [----------] 47 tests from FieldFactoryCreationTest/0 (9 ms total) [----------] 47 tests from FieldFactoryCreationTest/1 (9 ms total) [----------] 28 tests from FieldFactoryTest (6 ms total) [----------] 6 tests from FieldFactoryCreateAndTransformTest (1 ms total) [----------] 28 tests from FieldGroupTest (0 ms total) [----------] 101 tests from FieldPerpTest (17 ms total) [----------] 10 tests from InitialProfileTest (2 ms total) [ RUN ] Vector2DTest.ApplyBoundaryString Option input:transform_from_field_aligned = 1 (default) [----------] 46 tests from Vector2DTest (6 ms total) [----------] 49 tests from Vector3DTest (7 ms total) [----------] 10 tests from WhereTest (1 ms total) [----------] 12 tests from ArrayTest (0 ms total) [----------] 4 tests from AssertTest (0 ms total) [----------] 25 tests from DerivativeStoreTest (5 ms total) [----------] 6 tests from GenericFactory (0 ms total) [----------] 3 tests from MacroForEachTest (0 ms total) [----------] 3 tests from MacroForEachFnTest (0 ms total) [----------] 2 tests from MonitorTest (0 ms total) [----------] 33 tests from RegionTest (5 ms total) [----------] 6 tests from RegionIndexConversionTest (0 ms total) [----------] 2 tests from RegionIndex2DTest (0 ms total) [----------] 2 tests from RegionIndex3DTest (0 ms total) [----------] 21 tests from RegionIndexTest/0 (0 ms total) [----------] 21 tests from RegionIndexTest/1 (0 ms total) [----------] 21 tests from RegionIndexTest/2 (0 ms total) [----------] 23 tests from FieldIndexTest/0 (0 ms total) [----------] 23 tests from FieldIndexTest/1 (0 ms total) [----------] 48 tests from IndexOffsetTest (2 ms total) [----------] 5 tests from TemplateCombinationsTest (0 ms total) [----------] 6 tests from BoutTraitsTest (0 ms total) [----------] 3 tests from CyclicReduction (0 ms total) [----------] 9 tests from InterpolationFactoryTest (1 ms total) [----------] 11 tests from MaskTest (2 ms total) [----------] 34 tests from GridFromOptionsTest (97 ms total) [----------] 9 tests from ShiftedMetricTest (1 ms total) [----------] 5 tests from BoundaryFactoryTest (0 ms total) [----------] 2 tests from BoutMeshTest (3 ms total) [----------] 4 tests from CoordinatesTest (1 ms total) [----------] 16 tests from Field3DInterpToTest (0 ms total) [----------] 8 tests from Field2DInterpToTest (0 ms total) [----------] 25 tests from MeshTest (1 ms total) [----------] 6 tests from ParallelTransformTest (1 ms total) [----------] 50 tests from SolverTest (17 ms total) [----------] 12 tests from SolverFactoryTest (0 ms total) [----------] 20 tests from ParseCommandLineArgs (0 ms total) [----------] 3 tests from PrintStartupTest (0 ms total) [----------] 4 tests from BoutInitialiseFunctions (0 ms total) [----------] 3 tests from BoutExceptionTest (2498 ms total) [----------] 1 test from BoutRhsFailTest (0 ms total) [----------] 2 tests from BoutParallelRhsFailTest (0 ms total) [----------] 1 test from BoutIterationFailTest (0 ms total) [----------] 29 tests from ExpressionParserTest (0 ms total) [----------] 1 test from ParseExceptionTest (0 ms total) [----------] 11 tests from MsgStackTest (0 ms total) [----------] 99 tests from OptionsTest (17 ms total) [----------] 12 tests from OptionsFieldTest (2 ms total) [----------] 13 tests from OptionsNetCDFTest (18 ms total) [----------] 20 tests from OptionsReaderTest (2 ms total) [----------] 20 tests from OutputTest (0 ms total) [----------] 25 tests from RangeTest (0 ms total) [----------] 13 tests from TimerTest (23 ms total) [----------] 6 tests from TypeNameTest (0 ms total) [----------] 14 tests from MatrixTest (0 ms total) [----------] 14 tests from TensorTest (0 ms total) [----------] 4 tests from Invert3x3Test (0 ms total) [----------] 13 tests from NumberUtilitiesTest (0 ms total) [----------] 18 tests from StringUtilitiesTest (0 ms total) [----------] 4 tests from FunctionTraitsTest (0 ms total) [----------] 3 tests from VariantTest (0 ms total) [----------] 5 tests from FirstX/DerivativesTest (1 ms total) [----------] 5 tests from FirstY/DerivativesTest (1 ms total) [----------] 6 tests from FirstZ/DerivativesTest (2 ms total) [----------] 2 tests from SecondX/DerivativesTest (0 ms total) [----------] 2 tests from SecondY/DerivativesTest (0 ms total) [----------] 3 tests from SecondZ/DerivativesTest (0 ms total) [----------] 1 test from FourthX/DerivativesTest (0 ms total) [----------] 1 test from FourthY/DerivativesTest (0 ms total) [----------] 1 test from FourthZ/DerivativesTest (0 ms total) [----------] 6 tests from UpwindX/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindY/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxX/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxY/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from X/FirstDerivativesInterfaceTest (1 ms total) [----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (1 ms total) [----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (1 ms total) [----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total) [----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total) [----------] 3 tests from Z/SecondDerivativesInterfaceTest (0 ms total) [----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total) [----------] 6 tests from X/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Y/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Z/UpwindDerivativesInterfaceTest (1 ms total) [----------] 5 tests from X/FluxDerivativesInterfaceTest (1 ms total) [----------] 5 tests from Y/FluxDerivativesInterfaceTest (1 ms total) [----------] 5 tests from Z/FluxDerivativesInterfaceTest (1 ms total) [----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total) [==========] 1529 tests from 103 test suites ran. (3381 ms total) [ PASSED ] 1529 tests. ======= Making 56 integrated tests ======== test-yupdown ✓ 0.013 s test-vec ✓ 0.012 s test-twistshift ✓ 0.012 s test-twistshift-staggered ✓ 0.010 s test-subdir ✓ 0.985 s test-stopCheck ✓ 0.009 s test-stopCheck-file ✓ 0.009 s test-squash S - all_tests => False test-solver ✓ 0.008 s test-snb ✓ 0.008 s test-smooth ✓ 0.008 s test-slepc-solver S - slepc => False test-restarting ✓ 0.008 s test-restart-io_hdf5 ✓ 0.008 s test-restart-io ✓ 0.008 s test-region-iterator ✓ 0.008 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 0.008 s test-multigrid_laplace ✓ 0.008 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 0.008 s test-laplace ✓ 0.008 s test-io_hdf5 ✓ 0.008 s test-io ✓ 0.008 s test-invpar ✓ 0.008 s test-invertable-operator ✓ 0.008 s test-interpolate ✓ 0.008 s test-interchange-instability ✓ 0.008 s test-initial S - not make => False test-include S - all_tests => False test-gyro ✓ 0.008 s test-griddata ✓ 0.008 s test-griddata-yboundary-guards ✓ 0.008 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 0.008 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 0.008 s test-delp2 ✓ 0.008 s test-cyclic ✓ 0.008 s test-coordinates-initialization ✓ 0.008 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 0.008 s test-collect S - all_tests => False test-code-style S - not make => False test-boutcore/simple-model S - not make => False test-boutcore/print S - not make => False test-boutcore/mms-ddz S - not make => False test-boutcore/legacy-model S - not make => False test-boutcore/collect S - not make => False test-boutcore/collect-staggered S - not make => False test-bout-override-default-option ✓ 0.009 s test-beuler ✓ 0.008 s test-attribs S - all_tests => False ======= All tests passed in 1.29 seconds ======= ======= Running 56 integrated tests ======== test-yupdown ✓ 2.012 s test-vec ✓ 2.477 s test-twistshift ✓ 1.943 s test-twistshift-staggered ✓ 1.959 s test-subdir ✓ 3.104 s test-stopCheck ✓ 0.032 s test-stopCheck-file ✓ 8.760 s test-squash S - all_tests => False test-solver ✓ 13.473 s test-snb ✓ 1.717 s test-smooth ✓ 7.824 s test-slepc-solver S - slepc => False test-restarting ✓ 10.752 s test-restart-io_hdf5 ✓ 5.786 s test-restart-io ✓ 7.666 s test-region-iterator ✓ 3.991 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 5.219 s test-multigrid_laplace ✓ 6.314 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 30.138 s test-laplace ✓ 8.401 s test-io_hdf5 ✓ 43.350 s test-io ✓ 61.283 s test-invpar ✓ 403.408 s test-invertable-operator ✓ 4.181 s test-interpolate ✓ 22.792 s test-interchange-instability ✓ 10.848 s test-initial ✓ 20.994 s test-include S - all_tests => False test-gyro ✓ 5.931 s test-griddata ✓ 1.909 s test-griddata-yboundary-guards ✓ 15.322 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 6.127 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 14.185 s test-delp2 ✓ 29.747 s test-cyclic ✓ 22.851 s test-coordinates-initialization ✓ 1.766 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 23.666 s test-collect S - all_tests => False test-code-style ✓ 0.073 s test-boutcore/simple-model ✓ 2.242 s test-boutcore/print ✓ 1.821 s test-boutcore/mms-ddz ✓ 1.796 s test-boutcore/legacy-model ✓ 2.168 s test-boutcore/collect ✓ 2.031 s test-boutcore/collect-staggered ✓ 1.945 s test-bout-override-default-option ✓ 0.057 s test-beuler ✓ 1.669 s test-attribs S - all_tests => False ======= All tests passed in 823.77 seconds ======= ======= Making 21 MMS tests ======== wave-1d ✓ 0.009 s wave-1d-y ✓ 0.009 s upwinding3 S - not make => False time S - all_tests => False time-petsc S - not make => False spatial/fci ✓ 0.009 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 0.009 s derivatives3 S - not make => False bracket S - not make => False advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 0.04 seconds ======= ======= Running 21 MMS tests ======== wave-1d ✓ 12.774 s wave-1d-y ✓ 13.168 s upwinding3 ✓ 2.719 s time S - all_tests => False time-petsc S - all_tests => False spatial/fci ✓ 19.507 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 18.623 s derivatives3 ✓ 2.296 s bracket ✓ 1.788 s advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 70.89 seconds ======= + popd ~/build/BUILD/BOUT++-v4.4.2 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER Processing files: bout++-mpich-4.4.2-5.fc39.x86_64 ++ unset LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.cmk7PQ + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.6RHTJj + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-mpich = 4.4.2-5.fc39 bout++-mpich(x86-64) = 4.4.2-5.fc39 bundled(libpvode) libbout++.so.4.4.0()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libmpicxx.so.12()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-mpich-devel-4.4.2-5.fc39.x86_64 Provides: bout++-mpich-devel = 4.4.2-5.fc39 bout++-mpich-devel(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel Processing files: python3-bout++-mpich-4.4.2-5.fc39.x86_64 Provides: python-bout++-mpich = 4.4.2-5.fc39 python3-bout++-mpich = 4.4.2-5.fc39 python3-bout++-mpich(x86-64) = 4.4.2-5.fc39 python3.11-bout++-mpich = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.4.4.0()(64bit)(mpich-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.17()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(mpich-x86_64) libsundials_cvode.so.5()(64bit)(mpich-x86_64) libsundials_ida.so.5()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.5()(64bit)(mpich-x86_64) python(abi) = 3.11 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-openmpi-4.4.2-5.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.SQLSPj + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.VBhOSh + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-openmpi = 4.4.2-5.fc39 bout++-openmpi(x86-64) = 4.4.2-5.fc39 bundled(libpvode) libbout++.so.4.4.0()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-openmpi-devel-4.4.2-5.fc39.x86_64 Provides: bout++-openmpi-devel = 4.4.2-5.fc39 bout++-openmpi-devel(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel Processing files: python3-bout++-openmpi-4.4.2-5.fc39.x86_64 Provides: python-bout++-openmpi = 4.4.2-5.fc39 python3-bout++-openmpi = 4.4.2-5.fc39 python3-bout++-openmpi(x86-64) = 4.4.2-5.fc39 python3.11-bout++-openmpi = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.4.4.0()(64bit)(openmpi-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.17()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(openmpi-x86_64) libsundials_cvode.so.5()(64bit)(openmpi-x86_64) libsundials_ida.so.5()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.5()(64bit)(openmpi-x86_64) python(abi) = 3.11 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-common-4.4.2-5.fc39.x86_64 Provides: bout++-common = 4.4.2-5.fc39 bout++-common(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-bout++-4.4.2-5.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.nkgtto + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9aSvQP + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bout++ = 4.4.2-5.fc39 python-bout_runners = 4.4.2-5.fc39 python-zoidberg = 4.4.2-5.fc39 python3-bout++ = 4.4.2-5.fc39 python3-bout_runners = 4.4.2-5.fc39 python3-zoidberg = 4.4.2-5.fc39 python3.11-bout++ = 4.4.2-5.fc39 python3.11-bout_runners = 4.4.2-5.fc39 python3.11-zoidberg = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy Processing files: bout++-doc-4.4.2-5.fc39.noarch Provides: bout++-doc = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debugsource-4.4.2-5.fc39.x86_64 Provides: bout++-debugsource = 4.4.2-5.fc39 bout++-debugsource(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debuginfo-4.4.2-5.fc39.x86_64 Provides: bout++-debuginfo = 4.4.2-5.fc39 bout++-debuginfo(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64 Provides: bout++-mpich-debuginfo = 4.4.2-5.fc39 bout++-mpich-debuginfo(x86-64) = 4.4.2-5.fc39 debuginfo(build-id) = 32bb97b2cb59872fc893accdb78f798eacae4305 debuginfo(build-id) = 669ef011ea61afffe7486bbe250620f9452ac377 debuginfo(build-id) = 68b50b49d1b74b3442ea44a01ee755c115b5bb73 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: python3-bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64 Provides: debuginfo(build-id) = ca155578343f003b4f98d64002ea9187406aba0d python-bout++-mpich-debuginfo = 4.4.2-5.fc39 python3-bout++-mpich-debuginfo = 4.4.2-5.fc39 python3-bout++-mpich-debuginfo(x86-64) = 4.4.2-5.fc39 python3.11-bout++-mpich-debuginfo = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64 Provides: bout++-openmpi-debuginfo = 4.4.2-5.fc39 bout++-openmpi-debuginfo(x86-64) = 4.4.2-5.fc39 debuginfo(build-id) = 01b273a3ba5ad93ad9d9bcef60b70cff3bc17a4a debuginfo(build-id) = f4a2a5308ccdf2dc06c2299f28d1ac0fea2f0646 debuginfo(build-id) = f56fe7729250b8e93b26d15d5f6cf0e8d00ad96c Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: python3-bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64 Provides: debuginfo(build-id) = c633e4e62bfeb9c73a6d2ac99913f9694be807f6 python-bout++-openmpi-debuginfo = 4.4.2-5.fc39 python3-bout++-openmpi-debuginfo = 4.4.2-5.fc39 python3-bout++-openmpi-debuginfo(x86-64) = 4.4.2-5.fc39 python3.11-bout++-openmpi-debuginfo = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-debugsource-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-doc-4.4.2-5.fc39.noarch.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-4.4.2-5.fc39.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-devel-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-devel-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-common-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-4.4.2-5.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.f8VFd6 + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.b5L664 + umask 022 + cd /builddir/build/BUILD + rm -rf BOUT++-v4.4.2 BOUT++-v4.4.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0