Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1679471209.176088/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fbdf827b310>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mi40xjy5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mi40xjy5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cd929bdf8590468684c3a7da366c380b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1679471209.176088/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mi40xjy5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678924800
Wrote: /builddir/build/SRPMS/nco-5.1.5-1.fc39.src.rpm
RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1679471209.176088/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fbdf827b310>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mi40xjy5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mi40xjy5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '438d00ed50c34b009f304c815748288a', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1679471209.176088/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mi40xjy5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678924800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.oNWZGF
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf nco-5.1.5
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/nco-5.1.5.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd nco-5.1.5
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (nco-install_C_headers.patch):'
Patch #0 (nco-install_C_headers.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .install_C_headers --fuzz=0
patching file src/nco/Makefile.in
Hunk #1 succeeded at 782 (offset 15 lines).
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BewU6R
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd nco-5.1.5
+ export CPPFLAGS=-I/usr/include/udunits2
+ CPPFLAGS=-I/usr/include/udunits2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-03-14 18:15:11.000000000 +0000
+++ ./configure	2023-03-22 07:49:59.249338105 +0000
@@ -1952,7 +1952,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-03-22 07:49:59.249338105 +0000
+++ ./configure	2023-03-22 07:49:59.271338591 +0000
@@ -8648,7 +8648,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="sed -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -22691,7 +22691,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./autobld/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./autobld/config.sub
++ basename ./autobld/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./autobld/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './autobld/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./autobld/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./autobld/config.guess
++ basename ./autobld/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./autobld/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './autobld/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./autobld/ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info HAVE_ANTLR=yes --disable-dependency-tracking --includedir=/usr/include/nco
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking target system type... x86_64-redhat-linux-gnu
./configure: line 3537: git: command not found
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C preprocessor... gcc -E
checking how to run the C++ preprocessor... g++ -E
checking for flex... flex
checking for lex output file root... lex.yy
checking for lex library... none needed
checking whether yytext is a pointer... yes
checking whether ln -s works... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-gnu-ar... no
checking for ar... ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 8654:  -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory
ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for x86_64-redhat-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking for working memcmp... yes
checking whether lstat correctly handles trailing slash... yes
checking whether stat accepts an empty string... no
checking for working strtod... yes
checking for canonicalize_file_name... yes
checking for creat... yes
checking for floor... no
checking for gethostname... yes
checking for getpagesize... yes
checking for getrusage... yes
checking for memchr... yes
checking for memmove... yes
checking for memset... yes
checking for mkstemp... yes
checking for pow... no
checking for readlink... yes
checking for realpath... yes
checking for regcomp... yes
checking for setlocale... yes
checking for sqrt... no
checking for strchr... yes
checking for strerror... yes
checking for strpbrk... yes
checking for strrchr... yes
checking for strstr... yes
checking for strtol... yes
checking for egrep... (cached) /usr/bin/grep -E
checking for fcntl.h... yes
checking for getopt.h... yes
checking for libintl.h... yes
checking for limits.h... yes
checking for locale.h... yes
checking for netinet/in.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for cstdlib... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for pid_t... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for ptrdiff_t... yes
checking size of int*... 8
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
#################################
#  Test for netCDF             #
################################
checking for netcdf.h... yes
checking for nc_open in -lnetcdf... yes
#################################
#  Test for netCDF4 support     #
#################################
checking for gcc options needed to detect all undeclared functions... none needed
checking whether NC_CHUNKED is declared... yes
configure: netcdf.h contains netCDF4 definitions
checking for nc_def_var_chunking in -lnetcdf... yes
configure: Good news: Simple program compiles and links to netCDF4 library
checking for netcdf_mem.h... yes
checking for gcc option to support OpenMP... -fopenmp
configure: OpenMP support enabled
Beginning generic tests for DAP support
Testing for DAP-netCDF support (is DAP in libnetcdf.a?)...
checking for daperror in -lnetcdf... yes
configure: DAP support enabled
checking for getopt_long... yes
checking for sinf in -lsunmath... no
checking for gettext in -lintl... no
checking for res_init in -lresolv... no
checking for main in -lsocket... no
checking for main in -lthread... no
checking for nco_open in -lnco... no
checking for nc_inq_format... yes
checking for nc_inq_path... yes
checking for nc_set_log_level... yes
checking for nc_rename_grp... yes
checking for getopt... yes
checking for getopt_long... (cached) yes
checking for atan2... no
checking for acosf... no
checking for asinf... no
checking for atanf... no
checking for atan2f... no
checking for cosf... no
checking for expf... no
checking for fabsf... no
checking for fmodf... no
checking for log10f... no
checking for logf... no
checking for powf... no
checking for sinf... no
checking for sqrtf... no
checking for tanf... no
checking for erff... no
checking for erfcf... no
checking for gammaf... no
checking for acoshf... no
checking for asinhf... no
checking for atanhf... no
checking for coshf... no
checking for sinhf... no
checking for tanhf... no
checking for ceilf... no
checking for floorf... no
checking for nearbyint... no
checking for rint... no
checking for round... no
checking for trunc... no
checking for nearbyintf... no
checking for rintf... no
checking for roundf... no
checking for truncf... no
checking for getopt_long... (cached) yes
checking for strdup... yes
checking for strcasecmp... yes
checking for strsep... yes
checking for strcasestr... yes
checking for htonl... yes
checking for htons... yes
checking for ntohl... yes
checking for ntohs... yes
checking for __builtin_bswap16... no
checking for __builtin_bswap32... no
checking for __builtin_bswap64... no
##########################################################
#     Sorting out MacOS build parameters                #
##########################################################
#################################
#  Testing for ANTLR support    #
#################################
checking for runantlr... yes
configure: antlr library was found
checking for antlr/CommonToken.hpp... yes
INFO: ANTLR development support found---will build nco++ directory and ncap2
checking whether NCO C++ interface library libnco_c++ should be built... no
########################################
#     Testing for GSL support          #
########################################
configure: These GSL library and header tests must succeed for GSL support:
checking for gsl_sf_gamma_inc in -lgsl... yes
checking for /usr/include/gsl/gsl_sf_gamma.h... yes
configure: GSL support enabled
########################################
#     Testing for CCR support          #
########################################
checking where to put HDF5 plugins... .
checking whether Community Codec Repository library should be used... no
checking for regex.h... yes
checking for sys/types.h... (cached) yes
checking for regexec... yes
checking for regcomp... (cached) yes
checking for regfree... yes
########################################
#     Testing for UDUNITS2 support     #
########################################
checking for udunits2.h... yes
checking for library containing ut_parse... -ludunits2
configure: UDUnits2 support enabled
checking for ncgen... /usr/bin/ncgen
configure: Creating sample netCDF data files for self-tests
###############################
#    Require Shared Libs?     #
###############################
checking for makeinfo... yes
MAKEINFO_VERSION=7.0.2
configure: Documentation support enabled
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating data/Makefile
config.status: creating src/Makefile
config.status: creating src/nco/Makefile
config.status: creating man/Makefile
config.status: creating src/nco++/Makefile
config.status: creating doc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
Configuration Parameters:
AR_FLAGS............. cru
CC................... gcc
CFLAGS............... -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11
CPP.................. gcc -E
CPPFLAGS............. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include
CXX.................. g++
CXXFLAGS............. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 
ENABLE_CCR........... no
ENABLE_DAP........... yes
ENABLE_GSL........... yes
ENABLE_NETCDF4....... yes
ENABLE_OPENMP........ yes
ENABLE_UDUNITS2...... yes
GSL_ROOT............. /usr
HAVE_ANTLR........... yes
HAVE_MAKEINFO........ yes
HAVE_NETCDF4_H....... yes
HDF5_PLUGIN_PATH..... .
HOST................. 
HOSTNAME............. 438d00ed50c34b009f304c815748288a
LDFLAGS.............. -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes 
LIBS................. -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf  -lcurl -lgsl -lgslcblas -lm
NETCDF_ROOT.......... /usr
OPENMP_CFLAGS........ -fopenmp
host................. x86_64-redhat-linux-gnu
install prefix ...... /usr
*******************************************************************
Configuration complete. You are now ready to run 'make'.
Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax).
If the build fails, please examine the file 'configure.eg'
in the top-level NCO directory.  It contains examples known to
build NCO for various platforms and compilers.
*******************************************************************
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
/usr/bin/make  all-recursive
Making all in data
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/builddir/build/BUILD/nco-5.1.5/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc
make[2]: /builddir/build/BUILD/nco-5.1.5/src/nco/ncks: No such file or directory
make[2]: [Makefile:585: in_4c.nc] Error 127 (ignored)
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -o big.nc big.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
/usr/bin/ncgen -k netCDF-4 -lb -o "file://in_zarr4#mode=nczarr,file" in_zarr4.cdl 
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
ln -s -f in_zarr4 h0001
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
ln -s -f in_zarr4 h0002
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
ln -s -f in_zarr4 h0003
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
Making all in src
Making all in nco
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncatted.o ncatted.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_aux.lo nco_aux.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_aux.c  -fPIC -DPIC -o .libs/nco_aux.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_aux.c -o nco_aux.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_bnr.lo nco_bnr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_bnr.c  -fPIC -DPIC -o .libs/nco_bnr.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_att_utl.lo nco_att_utl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_att_utl.c  -fPIC -DPIC -o .libs/nco_att_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_cln_utl.lo nco_cln_utl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cln_utl.c  -fPIC -DPIC -o .libs/nco_cln_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
nco_cln_utl.c: In function 'nco_cln_var_prs':
nco_cln_utl.c:1339:27: warning: 'mss_val_flt' may be used uninitialized [-Wmaybe-uninitialized]
 1339 |       if(var->has_mss_val && var->val.fp[idx] == mss_val_flt){
      |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_cln_utl.c:1335:11: note: 'mss_val_flt' was declared here
 1335 |     float mss_val_flt;
      |           ^~~~~~~~~~~
nco_cln_utl.c:1320:27: warning: 'mss_val_dbl' may be used uninitialized [-Wmaybe-uninitialized]
 1320 |       if(var->has_mss_val && var->val.dp[idx] == mss_val_dbl){
      |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_cln_utl.c:1316:12: note: 'mss_val_dbl' was declared here
 1316 |     double mss_val_dbl;
      |            ^~~~~~~~~~~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_dmn.c  -fPIC -DPIC -o .libs/nco_cnf_dmn.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_typ.c  -fPIC -DPIC -o .libs/nco_cnf_typ.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1
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/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_cnk.lo nco_cnk.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnk.c  -fPIC -DPIC -o .libs/nco_cnk.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1
In file included from /usr/include/stdio.h:959,
                 from nco_cnk.h:18,
                 from nco_cnk.c:45:
In function 'fprintf',
    inlined from 'nco_cnk_sz_set_trv' at nco_cnk.c:1330:8:
/usr/include/bits/stdio2.h:79:10: warning: 'prt_sum' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
nco_cnk.c: In function 'nco_cnk_sz_set_trv':
nco_cnk.c:1305:12: note: 'prt_sum' was declared here
 1305 |     size_t prt_sum; /* [nbr] Partial sum (sum of coefficients times powers of two for higher powers */
      |            ^~~~~~~
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/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_cnv_arm.lo nco_cnv_arm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_arm.c  -fPIC -DPIC -o .libs/nco_cnv_arm.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1
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make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_crt.lo nco_crt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_crt.c  -fPIC -DPIC -o .libs/nco_crt.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_crt.c -o nco_crt.o >/dev/null 2>&1
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/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_cnv_csm.lo nco_cnv_csm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_csm.c  -fPIC -DPIC -o .libs/nco_cnv_csm.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1
In file included from /usr/include/stdio.h:959,
                 from nco_cnv_csm.h:17,
                 from nco_cnv_csm.c:10:
In function 'fprintf',
    inlined from 'nco_cnv_cf_cll_mth_add' at nco_cnv_csm.c:513:48:
/usr/include/bits/stdio2.h:79:10: warning: 'cll_mth_clm' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
nco_cnv_csm.c: In function 'nco_cnv_cf_cll_mth_add':
nco_cnv_csm.c:445:9: note: 'cll_mth_clm' was declared here
  445 |   char *cll_mth_clm; /* [sng] Cell methods for climatology */
      |         ^~~~~~~~~~~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_dbg.c  -fPIC -DPIC -o .libs/nco_dbg.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_dmn_utl.c  -fPIC -DPIC -o .libs/nco_dmn_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ctl.c  -fPIC -DPIC -o .libs/nco_ctl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_flt.c  -fPIC -DPIC -o .libs/nco_flt.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_flt.c -o nco_flt.o >/dev/null 2>&1
nco_flt.c: In function 'nco_flt_hdf5_prs':
nco_flt.c:395:28: warning: array subscript 'unsigned int[0]' is partly outside array bounds of 'short int[1]' [-Warray-bounds=]
  395 |         u32_lst[u32_nbr++]=*ui32p;
      |                            ^~~~~~
nco_flt.c:392:15: note: object 'sht_foo' of size 2
  392 |         short sht_foo=(short)strtol(prm_lst[prm_idx],&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
      |               ^~~~~~~
nco_flt.c:389:28: warning: array subscript 'unsigned int[0]' is partly outside array bounds of 'short unsigned int[1]' [-Warray-bounds=]
  389 |         u32_lst[u32_nbr++]=*ui32p;
      |                            ^~~~~~
nco_flt.c:386:24: note: object 'usht_foo' of size 2
  386 |         unsigned short usht_foo=(unsigned short)strtoul(prm_lst[prm_idx],&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
      |                        ^~~~~~~~
nco_flt.c:330:37: warning: '%s' directive argument is null [-Wformat-overflow=]
  330 |     (void)fprintf(stderr,"%s: ERROR %s reports supplied filter string is empty\n",nco_prg_nm_get(),flt_sng);
      |                                     ^~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_fl_utl.c  -fPIC -DPIC -o .libs/nco_fl_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1
nco_fl_utl.c: In function 'nco_fl_nm_prs':
nco_fl_utl.c:1749:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
 1749 |         (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2);
      |                                             ^~
nco_fl_utl.c:1749:41: note: directive argument in the range [-2147483648, 2147483645]
 1749 |         (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2);
      |                                         ^~~~~~~~~~~~~
In file included from /usr/include/stdio.h:959,
                 from nco_fl_utl.h:26,
                 from nco_fl_utl.c:10:
In function 'sprintf',
    inlined from 'nco_fl_nm_prs' at nco_fl_utl.c:1749:8:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 9 and 19 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from nco_fl_utl.h:28:
In function 'strncpy',
    inlined from 'nco_fl_mk_lcl' at nco_fl_utl.c:1440:13:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' destination unchanged after copying no bytes [-Wstringop-truncation]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
nco_fl_utl.c: In function 'nco_fl_ncz2psx':
nco_fl_utl.c:2590:29: warning: 'psx_fll_lcl' may be used uninitialized [-Wmaybe-uninitialized]
 2590 |     if(psx_fll) psx_fll_lcl=(char *)strdup(psx_fll_lcl);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_fl_utl.c:2513:11: note: 'psx_fll_lcl' was declared here
 2513 |     char *psx_fll_lcl; /* O [sng] Full POSIX path with filename, suitable for file stat() */
      |           ^~~~~~~~~~~
nco_fl_utl.c:2576:25: warning: 'psx_drc_lcl' may be used uninitialized [-Wmaybe-uninitialized]
 2576 |           psx_drc_lcl[0]='.';
      |           ~~~~~~~~~~~~~~^~~~
nco_fl_utl.c:2514:11: note: 'psx_drc_lcl' was declared here
 2514 |     char *psx_drc_lcl; /* O [sng] POSIX path only, no filename, suitable for directory stat() */
      |           ^~~~~~~~~~~
nco_fl_utl.c:2592:29: warning: 'psx_stb_lcl' may be used uninitialized [-Wmaybe-uninitialized]
 2592 |     if(psx_stb) psx_stb_lcl=(char *)strdup(psx_stb_lcl);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_fl_utl.c:2515:11: note: 'psx_stb_lcl' was declared here
 2515 |     char *psx_stb_lcl; /* O [sng] POSIX filename (stub) without path or suffix, suitable for netCDF dataset name */
      |           ^~~~~~~~~~~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_grp_trv.c  -fPIC -DPIC -o .libs/nco_grp_trv.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1
nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst':
nco_lst_utl.c:38:89: warning: unknown escape sequence: '\.'
   38 |   const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */
      |                                                                                         ^
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nco_map.c: In function 'nco_map_mk':
nco_map.c:302:12: warning: variable 'flg_grd_out_rct' set but not used [-Wunused-but-set-variable]
  302 |   nco_bool flg_grd_out_rct=False; /* [flg] Rectangular coordinates */
      |            ^~~~~~~~~~~~~~~
nco_map.c:300:12: warning: variable 'flg_grd_in_rct' set but not used [-Wunused-but-set-variable]
  300 |   nco_bool flg_grd_in_rct=False; /* [flg] Rectangular coordinates */
      |            ^~~~~~~~~~~~~~
nco_map.c:231:7: warning: variable 'bnd_nbr_out' set but not used [-Wunused-but-set-variable]
  231 |   int bnd_nbr_out; /* [nbr] Number of vertices for destination grid coordinates */
      |       ^~~~~~~~~~~
nco_map.c:213:8: warning: variable 'col_nbr_in' set but not used [-Wunused-but-set-variable]
  213 |   long col_nbr_in; /* [idx] Number of columns in source grid */
      |        ^~~~~~~~~~
nco_map.c:212:7: warning: variable 'bnd_nbr_in' set but not used [-Wunused-but-set-variable]
  212 |   int bnd_nbr_in; /* [nbr] Number of vertices for source grid coordinates */
      |       ^~~~~~~~~~
nco_map.c:418:15: warning: 'lon_nbr_out' may be used uninitialized [-Wmaybe-uninitialized]
  418 |         if(idx%lon_nbr_out == 0) idx_tst=idx;
      |            ~~~^~~~~~~~~~~~
nco_map.c:233:8: note: 'lon_nbr_out' was declared here
  233 |   long lon_nbr_out; /* [nbr] Number of longitudes in destination grid */
      |        ^~~~~~~~~~~
nco_map.c:402:15: warning: 'lon_nbr_in' may be used uninitialized [-Wmaybe-uninitialized]
  402 |         if(idx%lon_nbr_in == 0) idx_tst=idx;
      |            ~~~^~~~~~~~~~~
nco_map.c:214:8: note: 'lon_nbr_in' was declared here
  214 |   long lon_nbr_in; /* [idx] Number of longitudes in source grid */
      |        ^~~~~~~~~~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_md5.c -o nco_md5.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_omp.c  -fPIC -DPIC -o .libs/nco_omp.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_omp.c -o nco_omp.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_pck.c  -fPIC -DPIC -o .libs/nco_pck.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_pck.c -o nco_pck.o >/dev/null 2>&1
nco_pck.c: In function 'nco_pck_map_get':
nco_pck.c:160:88: warning: '%s' directive argument is null [-Wformat-overflow=]
  160 |     (void)fprintf(stderr,"%s: ERROR %s reports empty user-specified packing map string %s\n",nco_prg_nm,fnc_nm,nco_pck_map_sng);
      |                                                                                        ^~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_netcdf.c  -fPIC -DPIC -o .libs/nco_netcdf.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ply.c  -fPIC -DPIC -o .libs/nco_ply.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ply.c -o nco_ply.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ply_lst.c  -fPIC -DPIC -o .libs/nco_ply_lst.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ply_lst.c -o nco_ply_lst.o >/dev/null 2>&1
nco_ply_lst.c: In function 'nco_poly_lst_mk_vrl_crt':
nco_ply_lst.c:608:10: warning: variable 'size' set but not used [-Wunused-but-set-variable]
  608 |   kd_box size;
      |          ^~~~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ppc.c  -fPIC -DPIC -o .libs/nco_ppc.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1
nco_ppc.c: In function 'nco_ppc_bitmask':
nco_ppc.c:1220:32: warning: 'mss_val_cmp_dbl' may be used uninitialized [-Wmaybe-uninitialized]
 1220 |         if(op1.dp[idx] != 0ULL && op1.dp[idx] != mss_val_cmp_dbl){ /* Never quantize upwards floating point values of zero */
      |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_ppc.c:660:10: note: 'mss_val_cmp_dbl' was declared here
  660 |   double mss_val_cmp_dbl; /* Missing value for comparison to double precision values */
      |          ^~~~~~~~~~~~~~~
nco_ppc.c:1046:11: warning: 'mss_val_cmp_flt' may be used uninitialized [-Wmaybe-uninitialized]
 1046 |         if(op1.fp[idx] != mss_val_cmp_flt && op1.fp[idx] != 0.0f){ /* Never quantize upwards floating point values of zero */
      |           ^
nco_ppc.c:662:9: note: 'mss_val_cmp_flt' was declared here
  662 |   float mss_val_cmp_flt; /* Missing value for comparison to single precision values */
      |         ^~~~~~~~~~~~~~~
nco_ppc.c:1012:18: warning: 'u32_ptr' may be used uninitialized [-Wmaybe-uninitialized]
 1012 |           u32_ptr[idx]&=msk_f32_u32_zro; /* Shave as normal */
      |           ~~~~~~~^~~~~
nco_ppc.c:674:17: note: 'u32_ptr' was declared here
  674 |   unsigned int *u32_ptr;
      |                 ^~~~~~~
nco_ppc.c:1195:18: warning: 'u64_ptr' may be used uninitialized [-Wmaybe-uninitialized]
 1195 |           u64_ptr[idx]&=msk_f64_u64_zro;
      |           ~~~~~~~^~~~~
nco_ppc.c:678:27: note: 'u64_ptr' was declared here
  678 |   unsigned long long int *u64_ptr;
      |                           ^~~~~~~
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rec_var.c  -fPIC -DPIC -o .libs/nco_rec_var.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_prn.c  -fPIC -DPIC -o .libs/nco_prn.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_prn.c -o nco_prn.o >/dev/null 2>&1
nco_prn.c: In function 'nco_prn_var_val_lmt':
nco_prn.c:1649:53: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=]
 1649 |           (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng);
      |                                                     ^~                               ~~~~~~~
In file included from /usr/include/stdio.h:959,
                 from nco_prn.h:22,
                 from nco_prn.c:10:
In function 'sprintf',
    inlined from 'nco_prn_var_val_lmt' at nco_prn.c:1649:10:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 19 and 118 bytes into a destination of size 100
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
nco_prn.c: In function 'nco_prn_var_dfn':
nco_prn.c:1884:36: warning: 'vln_lng_avg' may be used uninitialized [-Wmaybe-uninitialized]
 1884 |       if(cls_typ == NC_VLEN) (void)fprintf(fp_out,"%*s%s size (RAM) = %ld*mean_length(NC_VLEN)*sizeof(%s) = %ld*%g*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,var_sz,nco_typ_sng(bs_typ),var_sz,vln_lng_avg,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); else (void)fprintf(fp_out,"%*s%s size (RAM) = %ld*sizeof(%s) = %ld*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,var_sz,nco_typ_sng(cls_typ),var_sz,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:1726:9: note: 'vln_lng_avg' was declared here
 1726 |   float vln_lng_avg; /* [nbr] Mean vlen length */
      |         ^~~~~~~~~~~
nco_prn.c: In function 'nco_prn_att':
nco_prn.c:807:15: warning: 'mbr_val' may be used uninitialized [-Wmaybe-uninitialized]
  807 |           rcd=nco_inq_enum_ident(grp_id,att[idx].type,mbr_val,mbr_nm);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:478:15: note: 'mbr_val' was declared here
  478 |     long long mbr_val;
      |               ^~~~~~~
nco_prn.c: In function 'nco_prn_var_val_trv':
nco_prn.c:2549:22: warning: 'vln_val_dp' may be used uninitialized [-Wmaybe-uninitialized]
 2549 |               val_dbl=vln_val_dp[vln_idx];
      |               ~~~~~~~^~~~~~~~~~~~~~~~~~~~
nco_prn.c:2391:13: note: 'vln_val_dp' was declared here
 2391 |     double *vln_val_dp;
      |             ^~~~~~~~~~
nco_prn.c:2531:29: warning: 'vln_val_fp' may be used uninitialized [-Wmaybe-uninitialized]
 2531 |                 is_mss_val=!memcmp((char *)vln_val_fp+vln_idx*val_sz_byt,var->mss_val.vp,(size_t)val_sz_byt);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2392:12: note: 'vln_val_fp' was declared here
 2392 |     float *vln_val_fp;
      |            ^~~~~~~~~~
nco_prn.c:2564:78: warning: 'vln_val_ip' may be used uninitialized [-Wmaybe-uninitialized]
 2564 |               if(prn_flg->PRN_MSS_VAL_BLANK && var->has_mss_val) is_mss_val=!memcmp((char *)vln_val_ip+vln_idx*val_sz_byt,var->mss_val.vp,(size_t)val_sz_byt);
      |                                                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2393:14: note: 'vln_val_ip' was declared here
 2393 |     nco_int *vln_val_ip;
      |              ^~~~~~~~~~
nco_prn.c:2569:106: warning: 'vln_val_sp' may be used uninitialized [-Wmaybe-uninitialized]
 2569 |           case NC_SHORT: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_sp[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                                                ~~~~~~~~~~^~~~~~~~~
nco_prn.c:2394:16: note: 'vln_val_sp' was declared here
 2394 |     nco_short *vln_val_sp;
      |                ^~~~~~~~~~
nco_prn.c:2572:105: warning: 'vln_val_bp' may be used uninitialized [-Wmaybe-uninitialized]
 2572 |           case NC_BYTE: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_bp[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                                               ~~~~~~~~~~^~~~~~~~~
nco_prn.c:2395:15: note: 'vln_val_bp' was declared here
 2395 |     nco_byte *vln_val_bp;
      |               ^~~~~~~~~~
nco_prn.c:2573:107: warning: 'vln_val_ubp' may be used uninitialized [-Wmaybe-uninitialized]
 2573 |           case NC_UBYTE: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_ubp[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                                                ~~~~~~~~~~~^~~~~~~~~
nco_prn.c:2396:16: note: 'vln_val_ubp' was declared here
 2396 |     nco_ubyte *vln_val_ubp;
      |                ^~~~~~~~~~~
nco_prn.c:2574:108: warning: 'vln_val_usp' may be used uninitialized [-Wmaybe-uninitialized]
 2574 |           case NC_USHORT: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_usp[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                                                 ~~~~~~~~~~~^~~~~~~~~
nco_prn.c:2397:17: note: 'vln_val_usp' was declared here
 2397 |     nco_ushort *vln_val_usp;
      |                 ^~~~~~~~~~~
nco_prn.c:2575:72: warning: 'vln_val_uip' may be used uninitialized [-Wmaybe-uninitialized]
 2575 |           case NC_UINT: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_uip[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2398:15: note: 'vln_val_uip' was declared here
 2398 |     nco_uint *vln_val_uip;
      |               ^~~~~~~~~~~
nco_prn.c:2576:73: warning: 'vln_val_i64p' may be used uninitialized [-Wmaybe-uninitialized]
 2576 |           case NC_INT64: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_i64p[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2399:16: note: 'vln_val_i64p' was declared here
 2399 |     nco_int64 *vln_val_i64p;
      |                ^~~~~~~~~~~~
nco_prn.c:2577:74: warning: 'vln_val_ui64p' may be used uninitialized [-Wmaybe-uninitialized]
 2577 |           case NC_UINT64: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_ui64p[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2400:17: note: 'vln_val_ui64p' was declared here
 2400 |     nco_uint64 *vln_val_ui64p;
      |                 ^~~~~~~~~~~~~
nco_prn.c:2577:48: warning: 'vln_lng' may be used uninitialized [-Wmaybe-uninitialized]
 2577 |           case NC_UINT64: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_ui64p[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                         ~~~~~~~^~~~~~~~
nco_prn.c:2403:12: note: 'vln_lng' was declared here
 2403 |     size_t vln_lng;
      |            ^~~~~~~
nco_prn.c:2577:74: warning: 'vln_lngm1' may be used uninitialized [-Wmaybe-uninitialized]
 2577 |           case NC_UINT64: for(vln_idx=0;vln_idx<vln_lng;vln_idx++) (void)fprintf(fp_out,fmt_sng,vln_val_ui64p[vln_idx],(vln_idx != vln_lngm1) ? spr_sng : ""); break;
      |                                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2404:12: note: 'vln_lngm1' was declared here
 2404 |     size_t vln_lngm1;
      |            ^~~~~~~~~
nco_prn.c:2599:11: warning: 'mbr_val' may be used uninitialized [-Wmaybe-uninitialized]
 2599 |           nco_inq_enum_ident(nc_id,var->type,mbr_val,mbr_nm);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_prn.c:2389:15: note: 'mbr_val' was declared here
 2389 |     long long mbr_val;
      |               ^~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_rth_flt.lo nco_rth_flt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rth_flt.c  -fPIC -DPIC -o .libs/nco_rth_flt.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_rth_utl.lo nco_rth_utl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rth_utl.c  -fPIC -DPIC -o .libs/nco_rth_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_scl_utl.lo nco_scl_utl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_scl_utl.c  -fPIC -DPIC -o .libs/nco_scl_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_s1d.lo nco_s1d.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_s1d.c  -fPIC -DPIC -o .libs/nco_s1d.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_s1d.c -o nco_s1d.o >/dev/null 2>&1
nco_s1d.c: In function 'nco_s1d_unpack':
nco_s1d.c:383:9: warning: variable 'lon_dmn_nm_out' set but not used [-Wunused-but-set-variable]
  383 |   char *lon_dmn_nm_out;
      |         ^~~~~~~~~~~~~~
nco_s1d.c:382:9: warning: variable 'lat_dmn_nm_out' set but not used [-Wunused-but-set-variable]
  382 |   char *lat_dmn_nm_out;
      |         ^~~~~~~~~~~~~~
nco_s1d.c:353:10: warning: variable 'grd_sz_in' set but not used [-Wunused-but-set-variable]
  353 |   size_t grd_sz_in; /* [nbr] Number of elements in single layer of input grid */
      |          ^~~~~~~~~
nco_s1d.c:45:9: warning: variable 'fl_out' set but not used [-Wunused-but-set-variable]
   45 |   char *fl_out;
      |         ^~~~~~
nco_s1d.c:857:45: warning: 'fl_tpl' may be used uninitialized [-Wmaybe-uninitialized]
  857 |     if(FL_RTR_RMT_LCN && RM_RMT_FL_PST_PRC) (void)nco_fl_rm(fl_tpl);
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~
nco_s1d.c:46:9: note: 'fl_tpl' was declared here
   46 |   char *fl_tpl; /* [sng] Template file (contains horizontal grid) */
      |         ^~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_scm.lo nco_scm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_scm.c  -fPIC -DPIC -o .libs/nco_scm.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_scm.c -o nco_scm.o >/dev/null 2>&1
In file included from /usr/include/string.h:535,
                 from nco_scm.h:22,
                 from nco_scm.c:10:
In function 'strncpy',
    inlined from 'cvs_vrs_prs' at nco_scm.c:83:14:
/usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' offset 7 is out of the bounds [0, 7] of object 'cvs_Name' with type 'char[7]' [-Warray-bounds=]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
nco_scm.c: In function 'cvs_vrs_prs':
nco_scm.c:34:8: note: 'cvs_Name' declared here
   34 |   char cvs_Name[]="$Name$";
      |        ^~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_sld.lo nco_sld.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_sld.c  -fPIC -DPIC -o .libs/nco_sld.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_sld.c -o nco_sld.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_sng_utl.lo nco_sng_utl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_sng_utl.c  -fPIC -DPIC -o .libs/nco_sng_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
nco_sng_utl.c: In function 'nm2sng_cdl':
nco_sng_utl.c:270:41: warning: '__snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
  270 |         snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr);
      |                                         ^
In file included from /usr/include/stdio.h:959,
                 from nco_sng_utl.h:21,
                 from nco_sng_utl.c:10:
In function 'snprintf',
    inlined from 'nm2sng_cdl' at nco_sng_utl.c:270:2:
/usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
nco_sng_utl.c: In function 'nm2sng_fl':
nco_sng_utl.c:425:41: warning: '__snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
  425 |         snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr);
      |                                         ^
In function 'snprintf',
    inlined from 'nm2sng_fl' at nco_sng_utl.c:425:2:
/usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_sph.lo nco_sph.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_sph.c  -fPIC -DPIC -o .libs/nco_sph.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_sph.c -o nco_sph.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
nco_sph.c: In function 'nco_sph_seg_int_old':
nco_sph.c:508:10: warning: variable 'nx_ci' set but not used [-Wunused-but-set-variable]
  508 |   double nx_ci;
      |          ^~~~~
nco_sph.c:506:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable]
  506 |   double nx3;
      |          ^~~
nco_sph.c:505:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable]
  505 |   double nx2;
      |          ^~~
nco_sph.c: In function 'nco_sph_seg_parallel':
nco_sph.c:1426:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable]
 1426 |   double nx3;
      |          ^~~
nco_sph.c:1425:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable]
 1425 |   double nx2;
      |          ^~~
nco_sph.c:1424:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable]
 1424 |   double nx1;
      |          ^~~
nco_sph.c: In function 'nco_sph_seg_vrt_int':
nco_sph.c:1836:10: warning: variable 'nx_av' set but not used [-Wunused-but-set-variable]
 1836 |   double nx_av;
      |          ^~~~~
nco_sph.c:1835:10: warning: variable 'nx_ab' set but not used [-Wunused-but-set-variable]
 1835 |   double nx_ab;
      |          ^~~~~
nco_sph.c: In function 'nco_sph_is_convex':
nco_sph.c:2469:8: warning: variable 'n1' set but not used [-Wunused-but-set-variable]
 2469 | double n1;
      |        ^~
nco_sph.c: In function 'nco_rll_intersect':
nco_sph.c:3302:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable]
 3302 |   double nx2;
      |          ^~~
nco_sph.c:3301:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable]
 3301 |   double nx1;
      |          ^~~
In file included from /usr/include/stdio.h:959,
                 from nco_sph.h:61,
                 from nco_sph.c:49:
In function 'fprintf',
    inlined from 'nco_sph_seg_int_old' at nco_sph.c:584:5:
/usr/include/bits/stdio2.h:79:10: warning: 'nx_ai' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
nco_sph.c: In function 'nco_sph_seg_int_old':
nco_sph.c:507:10: note: 'nx_ai' was declared here
  507 |   double nx_ai;
      |          ^~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_srm.lo nco_srm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_srm.c  -fPIC -DPIC -o .libs/nco_srm.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_srm.c -o nco_srm.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_var_avg.lo nco_var_avg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_avg.c  -fPIC -DPIC -o .libs/nco_var_avg.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_var_lst.lo nco_var_lst.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_lst.c  -fPIC -DPIC -o .libs/nco_var_lst.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_var_rth.lo nco_var_rth.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_rth.c  -fPIC -DPIC -o .libs/nco_var_rth.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1
nco_var_rth.c: In function 'nco_var_sbt':
nco_var_rth.c:3726:25: warning: 'tm_srt' may be used uninitialized [-Wmaybe-uninitialized]
 3726 |     tm_drn=1.0e6*(tm_end-tm_srt)/CLOCKS_PER_SEC;
      |                  ~~~~~~~^~~~~~~~
nco_var_rth.c:3539:11: note: 'tm_srt' was declared here
 3539 |   clock_t tm_srt;
      |           ^~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_var_scv.lo nco_var_scv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_scv.c  -fPIC -DPIC -o .libs/nco_var_scv.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_rgr.lo nco_rgr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rgr.c  -fPIC -DPIC -o .libs/nco_rgr.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1
nco_rgr.c: In function 'nco_ntp_vrt._omp_fn.0':
nco_rgr.c:3286:19: warning: 'crd_out_mnt' may be used uninitialized [-Wmaybe-uninitialized]
 3286 |           double *crd_out_mnt; /* Output vertical coordinate reversed if necessary to be monotonically increasing */
      |                   ^~~~~~~~~~~
nco_rgr.c:3401:35: warning: 'crd_in_mnt' may be used uninitialized [-Wmaybe-uninitialized]
 3401 |                 crd_in_mnt[in_idx]=crd_in[in_nbr-in_idx-1];
      |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
nco_rgr.c:3285:19: note: 'crd_in_mnt' was declared here
 3285 |           double *crd_in_mnt; /* Input vertical coordinate reversed if necessary to be monotonically increasing */
      |                   ^~~~~~~~~~
nco_rgr.c:3402:35: warning: 'dat_in_mnt' may be used uninitialized [-Wmaybe-uninitialized]
 3402 |                 dat_in_mnt[in_idx]=dat_in[in_nbr-in_idx-1];
      |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
nco_rgr.c:3287:19: note: 'dat_in_mnt' was declared here
 3287 |           double *dat_in_mnt; /* Input data (to be interpolated) reversed if necessary along with input grid */
      |                   ^~~~~~~~~~
nco_rgr.c:3446:39: warning: 'dat_out_mnt' may be used uninitialized [-Wmaybe-uninitialized]
 3446 |                   dat_out_mnt[out_idx]=mss_val_cmp_dbl;
      |                   ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
nco_rgr.c:3288:19: note: 'dat_out_mnt' was declared here
 3288 |           double *dat_out_mnt; /* Output data (interpolated) reversed if necessary along with output grid */
      |                   ^~~~~~~~~~~
nco_rgr.c:3544:21: warning: 'FIRST_WARNING_RHS' may be used uninitialized [-Wmaybe-uninitialized]
 3544 |                   if(FIRST_WARNING_RHS) (void)fprintf(fp_stdout,"%s: INFO %s geopotential height extrapolated toward/into surface using hypsometric equation with constant global mean virtual temperature = %g for variable %s\n",nco_prg_nm_get(),fnc_nm,tpt_vrt_avg,var_nm);
      |                     ^
nco_rgr.c:3355:20: note: 'FIRST_WARNING_RHS' was declared here
 3355 |           nco_bool FIRST_WARNING_RHS; /* [flg] First warning for RHS extrapolation */
      |                    ^~~~~~~~~~~~~~~~~
nco_rgr.c:3466:21: warning: 'FIRST_WARNING_LHS' may be used uninitialized [-Wmaybe-uninitialized]
 3466 |                   if(FIRST_WARNING_LHS) (void)fprintf(fp_stdout,"%s: INFO %s geopotential height extrapolated upward towards space using hypsometric equation with constant global mean virtual temperature = %g for variable %s\n",nco_prg_nm_get(),fnc_nm,tpt_vrt_avg,var_nm);
      |                     ^
nco_rgr.c:3354:20: note: 'FIRST_WARNING_LHS' was declared here
 3354 |           nco_bool FIRST_WARNING_LHS; /* [flg] First warning for LHS extrapolation */
      |                    ^~~~~~~~~~~~~~~~~
nco_rgr.c: In function 'nco_rgr_ini':
nco_rgr.c:546:9: warning: 'cnv_nbr' may be used uninitialized [-Wmaybe-uninitialized]
  546 |       if(cnv_nbr != 4) cnv_nbr=sscanf(rgr_lst[rgr_var_idx].val,"%lf,%lf,%lf,%lf",&rgr->lon_wst,&rgr->lon_est,&rgr->lat_sth,&rgr->lat_nrt);
      |         ^
nco_rgr.c:263:7: note: 'cnv_nbr' was declared here
  263 |   int cnv_nbr; /* [nbr] Number of elements converted by sscanf() */
      |       ^~~~~~~
nco_rgr.c: In function 'nco_lat_wgt_gss':
nco_rgr.c:6920:13: warning: 'sp' may be used uninitialized [-Wmaybe-uninitialized]
 6920 |       (void)fprintf(stdout,"%s: ERROR %s reports convergence only %g after %d iterations for lat_idx = %d\n",nco_prg_nm_get(),fnc_nm,fabs(sp),itr_nbr_max,lat_idx);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_rgr.c:6885:10: note: 'sp' was declared here
 6885 |   double sp; // Current iteration latitude increment
      |          ^~
nco_rgr.c: In function 'nco_sph_plg_area':
nco_rgr.c:7669:5: warning: 'c_idx' may be used uninitialized [-Wmaybe-uninitialized]
 7669 |   if(c_idx) c_idx=(long *)nco_free(c_idx);
      |     ^
nco_rgr.c:7129:9: note: 'c_idx' was declared here
 7129 |   long *c_idx; /* [idx] Point C 1-D indices for each triangle in polygon */
      |         ^~~~~
nco_rgr.c:7667:5: warning: 'a_idx' may be used uninitialized [-Wmaybe-uninitialized]
 7667 |   if(a_idx) a_idx=(long *)nco_free(a_idx);
      |     ^
nco_rgr.c:7127:9: note: 'a_idx' was declared here
 7127 |   long *a_idx; /* [idx] Point A 1-D indices for each triangle in polygon */
      |         ^~~~~
nco_rgr.c:7668:5: warning: 'b_idx' may be used uninitialized [-Wmaybe-uninitialized]
 7668 |   if(b_idx) b_idx=(long *)nco_free(b_idx);
      |     ^
nco_rgr.c:7128:9: note: 'b_idx' was declared here
 7128 |   long *b_idx; /* [idx] Point B 1-D indices for each triangle in polygon */
      |         ^~~~~
nco_rgr.c: In function 'nco_rgr_wgt':
nco_rgr.c:3971:113: warning: '%s' directive argument is null [-Wformat-overflow=]
 3971 |   if(nco_rgr_mth_typ == nco_rgr_mth_nil) (void)fprintf(stdout,"%s: WARNING %s reports map global attribute %s = %s does not match SCRIP/ESMF conventions that support only values of \"Conservative\" and \"Bilinear\" for this attribute. Proceeding anyway...\n",nco_prg_nm_get(),fnc_nm,cnv_sng,att_val);
      |                                                                                                                 ^~
nco_rgr.c:4202:29: warning: 'lon_psn_src' may be used uninitialized [-Wmaybe-uninitialized]
 4202 |     lon_nbr_in=dmn_sz_in_int[lon_psn_src];
      |                             ^
nco_rgr.c:4099:7: note: 'lon_psn_src' was declared here
 4099 |   int lon_psn_src; /* [idx] Ordinal position of longitude in rectangular source grid dimension-size array */
      |       ^~~~~~~~~~~
nco_rgr.c:4203:29: warning: 'lat_psn_src' may be used uninitialized [-Wmaybe-uninitialized]
 4203 |     lat_nbr_in=dmn_sz_in_int[lat_psn_src];
      |                             ^
nco_rgr.c:4100:7: note: 'lat_psn_src' was declared here
 4100 |   int lat_psn_src; /* [idx] Ordinal position of latitude  in rectangular source grid dimension-size array */
      |       ^~~~~~~~~~~
In file included from /usr/include/stdio.h:959,
                 from nco_rgr.h:19,
                 from nco_rgr.c:10:
In function 'fprintf',
    inlined from 'nco_rgr_wgt' at nco_rgr.c:4284:11:
/usr/include/bits/stdio2.h:79:10: warning: 'lon_nbr_in' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
nco_rgr.c: In function 'nco_rgr_wgt':
nco_rgr.c:4192:8: note: 'lon_nbr_in' was declared here
 4192 |   long lon_nbr_in; /* [idx] Number of longitudes in rectangular source grid */
      |        ^~~~~~~~~~
In function 'fprintf',
    inlined from 'nco_rgr_wgt' at nco_rgr.c:4284:11:
/usr/include/bits/stdio2.h:79:10: warning: 'lat_nbr_in' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
nco_rgr.c: In function 'nco_rgr_wgt':
nco_rgr.c:4193:8: note: 'lat_nbr_in' was declared here
 4193 |   long lat_nbr_in; /* [idx] Number of latitudes  in rectangular source grid */
      |        ^~~~~~~~~~
In function 'fprintf',
    inlined from 'nco_rgr_wgt' at nco_rgr.c:4695:47:
/usr/include/bits/stdio2.h:79:10: warning: 'idx_max_dvn' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
nco_rgr.c: In function 'nco_rgr_wgt':
nco_rgr.c:4675:8: note: 'idx_max_dvn' was declared here
 4675 |   long idx_max_dvn; /* [idx] Index of maximum deviation from 1.0 */
      |        ^~~~~~~~~~~
nco_rgr.c:5370:9: warningmake[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
: 'bnd_nm_out' may be used uninitialized [-Wmaybe-uninitialized]
 5370 |     if(!strcmp(bnd_nm_out,bnd_tm_nm_out)){
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_rgr.c:5300:9: note: 'bnd_nm_out' was declared here
 5300 |   char *bnd_nm_out;
      |         ^~~~~~~~~~
nco_rgr.c:6735:32: warning: 'tm_srt' may be used uninitialized [-Wmaybe-uninitialized]
 6735 |           tm_drn=(float)(tm_end-tm_srt)/CLOCKS_PER_SEC;
      |                         ~~~~~~~^~~~~~~~
nco_rgr.c:6358:17: note: 'tm_srt' was declared here
 6358 |         clock_t tm_srt; /* [us] Microseconds at start */
      |                 ^~~~~~
nco_rgr.c: In function 'nco_grd_nfr':
nco_rgr.c:10511:7: warning: 'lat_typ' may be used uninitialized [-Wmaybe-uninitialized]
10511 |     if(lat_typ == nco_grd_lat_nil){
      |       ^
nco_rgr.c:9126:23: note: 'lat_typ' was declared here
 9126 |   nco_grd_lat_typ_enm lat_typ; /* [enm] Latitude grid-type enum */
      |                       ^~~~~~~
nco_rgr.c:9710:11: warning: 'msk_unn.vp' may be used uninitialized [-Wmaybe-uninitialized]
 9710 |       rcd=nco_get_vara(in_id,msk_id,dmn_srt,dmn_cnt,msk_unn.vp,msk_typ);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_rgr.c:9132:11: note: 'msk_unn.vp' was declared here
 9132 |   ptr_unn msk_unn;
      |           ^~~~~~~
nco_rgr.c:10497:52: warning: 'lat_spn' may be used uninitialized [-Wmaybe-uninitialized]
10497 |     if(flg_s2n) lat_ctr_tst_eqa=lat_ntf[0L]+lat_spn*1.5/lat_nbr; else lat_ctr_tst_eqa=lat_ntf[0L]-lat_spn*1.5/lat_nbr;
      |                                             ~~~~~~~^~~~
nco_rgr.c:9023:10: note: 'lat_spn' was declared here
 9023 |   double lat_spn; /* [dgr] Latitude span */
      |          ^~~~~~~
nco_rgr.c: In function 'nco_ntp_vrt':
nco_rgr.c:1119:9: warning: 'ps_nm_tpl' may be used uninitialized [-Wmaybe-uninitialized]
 1119 |     rcd=nco_inq_varid_flg(tpl_id,ps_nm_tpl,&ps_id);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nco_rgr.c:1085:9: note: 'ps_nm_tpl' was declared here
 1085 |   char *ps_nm_tpl; /* [sng] Surface pressure field name in template file */
      |         ^~~~~~~~~
nco_rgr.c:1409:15: warning: 'mss_val_cmp_dbl' may be used uninitialized [-Wmaybe-uninitialized]
 1409 |             if(lt_out[idx_ttl] != mss_val_cmp_dbl) lt_sum[idx_fst+grd_idx]+=lt_out[idx_ttl];
      |               ^
nco_rgr.c:1311:10: note: 'mss_val_cmp_dbl' was declared here
 1311 |   double mss_val_cmp_dbl; /* Missing value for comparison to double precision values */
      |          ^~~~~~~~~~~~~~~
nco_rgr.c:2449:26: warning: 'dmn_nbr_out' may be used uninitialized [-Wmaybe-uninitialized]
 2449 |     for(dmn_idx=0;dmn_idx<dmn_nbr_out;dmn_idx++){
      |                   ~~~~~~~^~~~~~~~~~~~
nco_rgr.c:1148:7: note: 'dmn_nbr_out' was declared here
 1148 |   int dmn_nbr_out; /* [nbr] Number of dimensions in output file */
      |       ^~~~~~~~~~~
nco_rgr.c:2362:72: warning: 'lev_in_min' may be used uninitialized [-Wmaybe-uninitialized]
 2362 |       for(size_t idx_in=0;idx_in<tm_hrz_sz;idx_in++) prs_min_in[idx_in]=lev_in_min;
      |                                                      ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
nco_rgr.c:2358:14: note: 'lev_in_min' was declared here
 2358 |       double lev_in_min;
      |              ^~~~~~~~~~
nco_rgr.c:2370:77: warning: 'lev_out_min' may be used uninitialized [-Wmaybe-uninitialized]
 2370 |       for(size_t idx_out=0;idx_out<tm_hrz_sz;idx_out++) prs_min_out[idx_out]=lev_out_min;
      |                                                         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
nco_rgr.c:2366:14: note: 'lev_out_min' was declared here
 2366 |       double lev_out_min;
      |              ^~~~~~~~~~~
nco_rgr.c:2402:72: warning: 'lev_in_min' may be used uninitialized [-Wmaybe-uninitialized]
 2402 |       for(size_t idx_in=0;idx_in<tm_hrz_sz;idx_in++) prs_min_in[idx_in]=lev_in_min;
      |                                                      ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
nco_rgr.c:2398:14: note: 'lev_in_min' was declared here
 2398 |       double lev_in_min;
      |              ^~~~~~~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncbo.o ncbo.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncecat.o ncecat.c
ncecat.c: In function 'main':
ncecat.c:842:17: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
  842 |         gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng);
      |                 ^
ncecat.c:842:45: note: length computed here
  842 |         gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng);
      |                                             ^~~~~~~~~~~~~~~~~~~
ncecat.c:800:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=]
  800 |         sprintf(grp_out_sfx,"%02d",fl_idx);
      |                              ^~~~
ncecat.c:800:29: note: directive argument in the range [0, 2147483646]
  800 |         sprintf(grp_out_sfx,"%02d",fl_idx);
      |                             ^~~~~~
In file included from /usr/include/stdio.h:959,
                 from ncecat.c:46:
In function 'sprintf',
    inlined from 'main' at ncecat.c:800:9:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 3 and 11 bytes into a destination of size 3
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o nco_var_utl.lo nco_var_utl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_utl.c  -fPIC -DPIC -o .libs/nco_var_utl.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncflint.o ncflint.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncks.o ncks.c
ncks.c: In function 'main':
ncks.c:1571:7: warning: 'fl_lst_in' may be used uninitialized [-Wmaybe-uninitialized]
 1571 |     if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr);
      |       ^
ncks.c:124:10: note: 'fl_lst_in' was declared here
  124 |   char **fl_lst_in;
      |          ^~~~~~~~~
ncks.c:199:8: warning: 'in_id_arr' may be used uninitialized [-Wmaybe-uninitialized]
  199 |   int *in_id_arr; /* [id] netCDF file IDs used by OpenMP code */
      |        ^~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncpdq.o ncpdq.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncrename.o ncrename.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncwa.o ncwa.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncra.o ncra.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex  -Pnco_yy
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncap_utl.o ncap_utl.c
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
gcc -DHAVE_CONFIG_H -I. -I../..   -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -c -o ncap_lex.o ncap_lex.c
ncap_lex.c:2978:16: warning: 'input' defined but not used [-Wunused-function]
 2978 | #else
      |                ^    
ncap_lex.l: In function 'nco_yylex':
ncap_lex.l:611:34: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=]
  611 |       (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~        ~~~~~~
In file included from /usr/include/stdio.h:959,
                 from ncap_lex.c:277:
In function 'sprintf',
    inlined from 'nco_yylex' at ncap_lex.l:611:13:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 98 or more bytes (assuming 353) into a destination of size 200
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
ncap_lex.l: In function 'nco_yylex':
ncap_lex.l:587:36: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=]
  587 |         (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~        ~~~~~~
In function 'sprintf',
    inlined from 'nco_yylex' at ncap_lex.l:587:8:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 98 or more bytes (assuming 353) into a destination of size 200
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
ncap_lex.l: In function 'nco_yylex':
ncap_lex.l:634:34: warning: '%s' directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=]
  634 |       (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~
In function 'sprintf',
    inlined from 'nco_yylex' at ncap_lex.l:634:13:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 66 or more bytes (assuming 321) into a destination of size 200
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11 -release 5.1.5 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o libnco.la -rpath /usr/lib64   nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_crt.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_flt.lo nco_grp_utl.lo nco_grp_trv.lo nco_kd.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_s1d.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo  -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf  -lcurl -lgsl -lgslcblas -lm
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-redhat-linux/13/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/13/crtbeginS.o  .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_crt.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_flt.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_kd.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ply.o .libs/nco_ply_lst.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_s1d.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_sph.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o   -L/usr/lib64 -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-redhat-linux/13 -L/usr/lib/gcc/x86_64-redhat-linux/13/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-redhat-linux/13/crtendS.o /usr/lib/gcc/x86_64-redhat-linux/13/../../../../lib64/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -g -grecord-gcc-switches -fstack-protector-strong -m64 -mtune=generic -mno-omit-leaf-frame-pointer -fopenmp -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,--build-id=sha1   -fopenmp -Wl,-soname -Wl,libnco-5.1.5.so -o .libs/libnco-5.1.5.so
libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-5.1.5.so" "libnco.so")
libtool: link: ar cru .libs/libnco.a  nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_crt.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_flt.o nco_grp_utl.o nco_grp_trv.o nco_kd.o nco_lmt.o nco_lst_utl.o nco_map.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ply.o nco_ply_lst.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_s1d.o nco_scm.o nco_sld.o nco_sng_utl.o nco_sph.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o
libtool: link: ranlib .libs/libnco.a
libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" )
In function 'strncpy',
    inlined from 'cvs_vrs_prs' at nco_scm.c:83:14:
/usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' reading between 1 and 2147483647 bytes from a region of size 0 [-Wstringop-overread]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^
nco_scm.c: In function 'cvs_vrs_prs':
nco_scm.c:34:8: note: at offset 7 into source object 'cvs_Name' of size 7
   34 |   char cvs_Name[]="$Name$";
      |        ^
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
/bin/sh ../../libtool --tag=CXX  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -fopenmp -std=gnu11  -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf  -lcurl -lgsl -lgslcblas -lm
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncatted ncatted.o  -L/usr/lib64 ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp
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Making all in nco++
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o Invoke.o Invoke.cc
In file included from libnco++.hh:26,
                 from Invoke.cc:13:
fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined
   49 | #  define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION )
      | 
In file included from fmc_gsl_cls.hh:12:
../../config.h:443: note: this is the location of the previous definition
  443 | #define NCO_GSL_VERSION 207
      | 
In file included from ncap2_utl.hh:54,
                 from vtl_cls.hh:11,
                 from fmc_cls.hh:13,
                 from libnco++.hh:22:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/fstream:40,
                 from Invoke.cc:9:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
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g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o ncap2.o ncap2.cc
In file included from libnco++.hh:26,
                 from ncap2.cc:80:
fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined
   49 | #  define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION )
      | 
In file included from fmc_gsl_cls.hh:12:
../../config.h:443: note: this is the location of the previous definition
  443 | #define NCO_GSL_VERSION 207
      | 
In file included from ncap2_utl.hh:54,
                 from vtl_cls.hh:11,
                 from fmc_cls.hh:13,
                 from libnco++.hh:22:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from ncap2.cc:45:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
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g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o ncap2_att.o ncap2_att.cc
In file included from ncap2_utl.hh:54,
                 from ncap2_att.hh:42,
                 from ncap2_att.cc:1:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from ncap2_att.hh:9:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o sdo_utl.o sdo_utl.cc
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o sym_cls.o sym_cls.cc
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o fmc_cls.o fmc_cls.cc
In file included from ncap2_utl.hh:54,
                 from vtl_cls.hh:11,
                 from fmc_cls.hh:13,
                 from fmc_cls.cc:3:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from fmc_cls.hh:12:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o ncap2_utl.o ncap2_utl.cc
In file included from ncap2_utl.hh:54,
                 from ncap2_utl.cc:11:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from ncap2_utl.hh:20:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o fmc_all_cls.o fmc_all_cls.cc
In file included from prs_cls.hh:16,
                 from ncoGrammar.g:30,
                 from fmc_all_cls.hh:19,
                 from fmc_all_cls.cc:10:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from fmc_all_cls.hh:14:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
fmc_all_cls.cc: In member function 'bil_cls::fnd(antlr::ASTRefCount<antlr::AST>, antlr::ASTRefCount<antlr::AST>, fmc_cls&, ncoTree&)':
fmc_all_cls.cc:3834:19: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized]
 3834 |   in_typ=var_arr[0]->type;
      |          ~~~~~~~~~^
fmc_all_cls.cc:3780:12: note: 'var_arr' declared here
 3780 |   var_sct *var_arr[6];
      |            ^~~~~~~
fmc_all_cls.cc:3838:31: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized]
 3838 |     var_arr[1]=nco_var_cnf_typ(in_typ,var_arr[1]);
      |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
fmc_all_cls.cc:3780:12: note: 'var_arr' declared here
 3780 |   var_sct *var_arr[6];
      |            ^~~~~~~
fmc_all_cls.cc:3855:19: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized]
 3855 |       if(var_arr[1]->nbr_dim < 2)
      |          ~~~~~~~~~^
fmc_all_cls.cc:3780:12: note: 'var_arr' declared here
 3780 |   var_sct *var_arr[6];
      |            ^~~~~~~
fmc_all_cls.cc: In member function 'print_cls::fnd(antlr::ASTRefCount<antlr::AST>, antlr::ASTRefCount<antlr::AST>, fmc_cls&, ncoTree&)':
fmc_all_cls.cc:5679:15: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 5679 |        strncpy(var->val.cp,cp,sz);
      |               ^
fmc_all_cls.cc:5675:17: note: length computed here
 5675 |        sz=strlen(cp);
      |           ~~~~~~^~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o prs_cls.o prs_cls.cc
In file included from ncap2_utl.hh:54,
                 from prs_cls.cc:23:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from prs_cls.cc:13:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o NcapVar.o NcapVar.cc
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o NcapVarVector.o NcapVarVector.cc
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o fmc_gsl_cls.o fmc_gsl_cls.cc
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
In file included from fmc_gsl_cls.cc:10:
fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined
   49 | #  define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION )
      | 
In file included from ncap2_att.hh:5,
                 from ncap2_utl.hh:60,
                 from ncoGrammar.g:31,
                 from fmc_gsl_cls.hh:43:
../../config.h:443: note: this is the location of the previous definition
  443 | #define NCO_GSL_VERSION 207
      | 
In file included from nco_gsl.hh:31,
                 from fmc_gsl_cls.cc:11:
../../config.h:443: warning: "NCO_GSL_VERSION" redefined
  443 | #define NCO_GSL_VERSION 207
      | 
fmc_gsl_cls.hh:49: note: this is the location of the previous definition
   49 | #  define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION )
      | 
In file included from prs_cls.hh:16,
                 from ncoGrammar.g:30:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from fmc_gsl_cls.hh:21:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
fmc_gsl_cls.cc: In member function 'gsl_mfit_cls::mfit_fnd(bool&, std::vector<antlr::ASTRefCount<antlr::AST>, std::allocator<antlr::ASTRefCount<antlr::AST> > >&, fmc_cls&, ncoTree&)':
fmc_gsl_cls.cc:5202:46: warning: 'var_tmp' may be used uninitialized [-Wmaybe-uninitialized]
 5202 |         if(!prs_arg->ntl_scn && var_tmp->val.vp == NULL)
      |                                 ~~~~~~~~~~~~~^~
fmc_gsl_cls.cc:5137:19: note: 'var_tmp' was declared here
 5137 |          var_sct *var_tmp;
      |                   ^~~~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o ncoParser.o ncoParser.cpp
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
In file included from prs_cls.hh:16,
                 from ncoGrammar.g:30,
                 from ncoParser.cpp:2:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/antlr/Token.hpp:13,
                 from /usr/include/antlr/TokenStream.hpp:12,
                 from ncoParser.hpp:6:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o ncoLexer.o ncoLexer.cpp
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
In file included from prs_cls.hh:16,
                 from ncoGrammar.g:30,
                 from ncoLexer.cpp:2:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/antlr/Token.hpp:13,
                 from /usr/include/antlr/CommonToken.hpp:12,
                 from ncoLexer.hpp:6:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mASSIGN(bool)':
ncoLexer.cpp:416:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  416 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mPLUS_ASSIGN(bool)':
ncoLexer.cpp:430:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  430 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mMINUS_ASSIGN(bool)':
ncoLexer.cpp:444:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  444 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mTIMES_ASSIGN(bool)':
ncoLexer.cpp:458:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  458 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE_ASSIGN(bool)':
ncoLexer.cpp:472:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  472 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mINC(bool)':
ncoLexer.cpp:486:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  486 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mDEC(bool)':
ncoLexer.cpp:500:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  500 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mQUESTION(bool)':
ncoLexer.cpp:514:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  514 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLPAREN(bool)':
ncoLexer.cpp:528:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  528 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mRPAREN(bool)':
ncoLexer.cpp:542:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  542 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLCURL(bool)':
ncoLexer.cpp:556:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  556 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mRCURL(bool)':
ncoLexer.cpp:570:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  570 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLSQUARE(bool)':
ncoLexer.cpp:584:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  584 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mRSQUARE(bool)':
ncoLexer.cpp:598:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  598 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mCOMMA(bool)':
ncoLexer.cpp:612:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  612 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mQUOTE(bool)':
ncoLexer.cpp:626:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  626 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mSEMI(bool)':
ncoLexer.cpp:640:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  640 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mCOLON(bool)':
ncoLexer.cpp:654:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  654 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mCARET(bool)':
ncoLexer.cpp:668:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  668 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mTIMES(bool)':
ncoLexer.cpp:682:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  682 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE(bool)':
ncoLexer.cpp:696:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  696 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mMOD(bool)':
ncoLexer.cpp:710:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  710 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mPLUS(bool)':
ncoLexer.cpp:724:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  724 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mMINUS(bool)':
ncoLexer.cpp:738:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  738 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mEQ(bool)':
ncoLexer.cpp:752:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  752 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mNEQ(bool)':
ncoLexer.cpp:766:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  766 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLTHAN(bool)':
ncoLexer.cpp:780:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  780 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mGTHAN(bool)':
ncoLexer.cpp:794:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  794 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLEQ(bool)':
ncoLexer.cpp:808:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  808 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mGEQ(bool)':
ncoLexer.cpp:822:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  822 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mFLTHAN(bool)':
ncoLexer.cpp:836:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  836 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mFGTHAN(bool)':
ncoLexer.cpp:850:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  850 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLAND(bool)':
ncoLexer.cpp:864:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  864 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLNOT(bool)':
ncoLexer.cpp:878:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  878 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLOR(bool)':
ncoLexer.cpp:892:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  892 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mDOT(bool)':
ncoLexer.cpp:906:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  906 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mCALL_REF(bool)':
ncoLexer.cpp:920:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  920 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mDGT(bool)':
ncoLexer.cpp:934:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  934 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLPH(bool)':
ncoLexer.cpp:950:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
  950 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mLPHDGT(bool)':
ncoLexer.cpp:1036:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1036 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mXPN(bool)':
ncoLexer.cpp:1136:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1136 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mVAR_NM_QT(bool)':
ncoLexer.cpp:1212:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1212 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mBLASTOUT(bool)':
ncoLexer.cpp:1340:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1340 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mUNUSED_OPS(bool)':
ncoLexer.cpp:1370:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1370 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mWS(bool)':
ncoLexer.cpp:1422:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1422 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mCXX_COMMENT(bool)':
ncoLexer.cpp:1472:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1472 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mC_COMMENT(bool)':
ncoLexer.cpp:1502:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1502 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER_DOT(bool)':
ncoLexer.cpp:1560:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1560 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER(bool)':
ncoLexer.cpp:1684:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 1684 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mVAR_ATT(bool)':
ncoLexer.cpp:2036:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 2036 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mATT_ID(bool)':
ncoLexer.cpp:2317:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 2317 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
ncoLexer.cpp: In member function 'void ncoLexer::mINCLUDE(bool)':
ncoLexer.cpp:2688:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable]
 2688 |         ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex;
      |                                                   ^~~~~~~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o nco_gsl.o nco_gsl.cc
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
nco_gsl.cc:14:1: warning: 'double compute_covariance(const double*, size_t, const double*, size_t, size_t, double, double, const double*)' defined but not used [-Wunused-function]
   14 | compute_covariance
      | ^~~~~~~~~~~~~~~~~~
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
g++ -DHAVE_CONFIG_H -I. -I../..  -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -I/usr/include  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -c -o ncoTree.o ncoTree.cpp
In file included from prs_cls.hh:16,
                 from ncoGrammar.g:30,
                 from ncoTree.cpp:2:
NcapVector.hh:23:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   23 |   struct less_mag : public std::binary_function< T, T, bool>
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/antlr/Token.hpp:13,
                 from /usr/include/antlr/AST.hpp:13,
                 from /usr/include/antlr/TreeParser.hpp:12,
                 from ncoTree.hpp:7:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
/bin/sh ../../libtool --tag=CXX  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  ../nco/libnco.la -lantlr -lgsl -lgslcblas -lm -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o  -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf  -lcurl -lgsl -lgslcblas -lm
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o  ../nco/.libs/libnco.so -L/usr/lib64 -lantlr -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Nothing to be done for 'all-am'.
Making all in man
make[2]: Nothing to be done for 'all'.
Making all in doc
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/doc'
restore=: && backupdir=".am$$" && \
am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \
rm -rf $backupdir && mkdir $backupdir && \
if (/bin/sh '/builddir/build/BUILD/nco-5.1.5/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \
  for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \
    if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \
  done; \
else :; fi && \
cd "$am__cwd"; \
if /bin/sh '/builddir/build/BUILD/nco-5.1.5/autobld/missing' makeinfo   -I . \
 -o nco.info nco.texi; \
then \
  rc=0; \
  CDPATH="${ZSH_VERSION+.}:" && cd .; \
else \
  rc=$?; \
  CDPATH="${ZSH_VERSION+.}:" && cd . && \
  $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \
fi; \
rm -rf $backupdir; exit $rc
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/doc'
+ make -C doc html pdf
make: Entering directory '/builddir/build/BUILD/nco-5.1.5/doc'
rm -rf nco.htp
if /bin/sh '/builddir/build/BUILD/nco-5.1.5/autobld/missing' makeinfo --html --ifinfo --no-split  -I . \
 -o nco.htp nco.texi; \
then \
  rm -rf nco.html && mv nco.htp nco.html; \
else \
  rm -rf nco.htp; exit 1; \
fi
TEXINPUTS="../autobld:$TEXINPUTS" \
MAKEINFO='/bin/sh '/builddir/build/BUILD/nco-5.1.5/autobld/missing' makeinfo   -I .' \
texi2dvi --pdf --batch  --build-dir=nco.t2p -o nco.pdf  \
nco.texi
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[1] [2] (Summary) [3] [4] Chapter 1 [5] [6]
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[14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26]
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[64] [65] [66] [67] [68] [69] [70]
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[]@textrm Long op-tions: `@texttt --mro[]@textrm '[] `@texttt --dimension
[71]
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 []@texttt ncra -O -d time,1850-03-01T00:00:01,,8760,744,24 -n 150,4,1 1850.nc 
clm_drn.nc[] 
[72] [73] [74] [75] [76] [77] [78] [79] [80] [81]
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[]@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@
textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex
trm '[] or
[88] [89]
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 []@texttt # Average seasonally contiguous climatological monthly means into NH
 winter[] 
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 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n
c ANN.nc[] 
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 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl
m_??.nc ANN.nc[] 
[99]
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 []@texttt # Average seasonally discontiguous diurnally resolved means into a s
eason[] 
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 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n
c ANN.nc[] 
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 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli
matology[] 
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 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl
m_??.nc ANN.nc[] 
[100] [101]
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[102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
[114] [115] [116] </builddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_dfl.png>
[117] [118]
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[119] [120] </builddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_bz2.png> [121] </bu
ilddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_zst.png> [122] [123] [124] [125]
[126]
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[127]
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[]@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm-
[128] [129] [130] [131]
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 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h
0.0001-01.nc[] 
[132] [133] [134] [135] [136] [137]
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 [][] 
[138] [139] [140] [141] [142] [143] [144] [145]
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 []      @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size-
1))' \[] 
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 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in
.nc out.nc[] 
[146] [147] [148] [149]
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 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 
273.9, 274[] 
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 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 
273.9, 274[] 
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 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te
mperature data[] 
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 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i
n.nc ~/foo.nc[] 
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 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt
h1.nc[] 
[150]
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 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt
h1.nc[] 
[151]
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 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc 
in.nc[] 
[152] [153] [154]
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 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n
c out.nc[] 
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[157] [158]
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@texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell
[]@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te
xttt dcEdge[]@textrm ,
[159] [160] [161] [162] Chapter 4
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@texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by
[163] [164] [165]
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 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [
--hdr_pad @textttsl nbr@texttt ] [--hpss][] 
[166] [167] [168] [169] [170]
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 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime
nsion)[] 
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 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size 
is fixed[] 
[171] [172]
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 [][] 
[173]
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 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi-
dimensional output[] 
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 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24
.5,26.5,28.5[] 
[174]
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 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636
, 14.13716 ;[] 
[175] [176] [177] [178]
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[185] [186] [187]
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 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc 
foo.nc[] 
[188] [189]
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 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n
3 type double[] 
[190] [191]
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[]@textrm Consider ir-reg-u-
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[192]
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[193]
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 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/
nco/data:"[] 
[194]
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 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s
rt_map[] 
[195] [196] [197]
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 []@texttt //print("sorted time (ascending order) and associated sort map =\n")
;print(time);print(srt_map);[] 
[198]
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 []   @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re
sizes)[] 
[199] [200]
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[203] [204]
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 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min
 && XLONG <= lon_max);[] 
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 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_
in_x,grid_in_y)[] 
[205] [206] [207] [208]
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 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| 
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 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| 
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@textrm gsl[]sf[]coulomb[]wave[]FGp[]array| 
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@textrm gsl[]sf[]coulomb[]wave[]sphF[]array| 
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@textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| 
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 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)|
 
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@textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| 
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 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]
expr)| 
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 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| 
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@textrm gsl[]sf[]legendre[]Plm[]deriv[]array| 
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 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| 
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@textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| 
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@textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| 
[209] [210] [211] [212] [213] [214] [215] [216]
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[]@texttt status=@textbf gsl[]fit[]linear
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[]@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri
de_w,data_y,stride_
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[]@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_
w,data_y,stride_
[217]
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 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri
de, size_t n, double mean);[] 
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 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s
ize_t stride, size_t n);[] 
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 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si
ze_t stride, size_t n, double f) ;[] 
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 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m
ean);[] 
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 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st
ride, n, var_mean);[] 
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 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st
ride, n, var_f) ;[] 
[219] [220]
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 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639
02, 7730127, 15531355, 10387694 ;[] 
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 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n
c foo.nc[] 
[221] [222] [223] [224]
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 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text
rm , $@texti e[]$@textrm . Ex-am-ple:
[225]
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 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t
extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple:
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 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl
 x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple:
[226] [227]
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 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14.
50, 15.00};[] 
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 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05
458, 37.39353, 43.29914, 49.55782 ;[] 
[229] [230] [231] [232] [233] [234] [235]
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 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl
b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] 
[237] [238] [239] [240] [241]
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 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ]
 [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts
l yr_end@texttt ][] 
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 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n
tv_tms] [--no_stg_grd] [--no_stdin][] 
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 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso
ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][]
 
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 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio]
 [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio
n][] 
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 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o
utput=drc_out[] 
[242] [243] [244] [245] [246] [247] [248] [249] [250]
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 []@texttt ncclimo --seasons=none ...            # Produce only monthly climos[
] 
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 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN
N[] 
[251] [252] [253]
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 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr
c_out[] 
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 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o
 $drc_out < foo[] 
[254]
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[255]
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 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl -
O drc_rgr[] 
[256] [257]
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 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm -
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 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm -
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma
p.nc \[] 
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg
r_prv -r map.nc[] 
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg
r -r map.nc \[] 
[258]
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 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu
 -N ncclimo[] 
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 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc
climo[] 
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 []@texttt salloc  -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na
me=ncclimo[] 
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 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc
limo \[] 
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[265] [266] [267] [268]
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 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt
 ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt
sl sz_lmn@texttt ][] 
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 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf
x sfx][] 
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 []@texttt [-O] [-o @textttsl output-
[269] [270] [271]
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 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w
eights[] 
[272] [273] [274]
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 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em
issions.nc[] 
[275] [276] [277]
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 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[]
 
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 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_
rec_var[] 
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 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n
c[] 
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 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
[] 
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 []@texttt <ncml:values separator="*">1964-03-13T21:09:0.000000</ncml:values>[]
 
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 []@texttt ncgen      -b -o hdf.hdf hdf.cdl # HDF ncgen is sometimes named...nc
gen[] 
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 []@texttt ncgen      -b -o in.hdf  in.cdl  # Fails: Some valid netCDF CDL brea
ks HDF ncgen[] 
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 []@texttt hncgen     -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p
ackages[] 
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 []@texttt h4_ncgen   -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda
 packages[] 
[286]
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 []@texttt ncgen-hdf  -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De
bian packages[] 
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 []@texttt hdp dumpsds hdf.hdf              # ncdump/h5dump-equivalent for HDF4
[] 
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 []@texttt h4_ncdump dumpsds hdf.hdf        # ncdump/h5dump-equivalent for HDF4
[] 
[287]
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 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out
.nc[] 
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 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0.
123456789[] 
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 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567,
 0.12345678, 0.123456789 ;[] 
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 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0
.123 ;[] 
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 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc
edrm NcML[] @textrm out-put:
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[295]
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 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/
/' | sort[] 
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 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" |
 cut -f 11- -d ' ' | sort[] 
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 []@texttt # Change values to be sure original values are not copied in followi
ng step[] 
[299] [300] [301]
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 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [-
v @textttsl var@texttt [,[]]] [-X ...] [-x][] 
[302] [303]
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 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex
ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[],
[304]
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 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex
ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[],
[305] [306] [307] [308] [309]
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 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension 
named "time"[] 
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 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim
ension[] 
[310]
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 []@texttt [-O] [-o @textttsl output-
[311] [312] [313] [314]
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 []@texttt [-O] [-o @textttsl output-
[315] [316]
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 []@texttt [-M] [-m @textttsl map_fl@texttt ] [--mpi_nbr=@textttsl mpi_nbr@text
tt ] [--mpi_pfx=@textttsl mpi_pfx@texttt ] [--msh_fl=@textttsl msh_fl@texttt ][
] 
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 []@texttt [--msk_apl] [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@texttt
sl msk_out@texttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl 
mss_val@texttt ][] 
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[408] Chapter 10 [409] [410] (General Index) [411] [412] [413] [414] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26]
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[64] [65] [66] [67] [68] [69] [70]
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[]@textrm Long op-tions: `@texttt --mro[]@textrm '[] `@texttt --dimension
[71]
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 []@texttt ncra -O -d time,1850-03-01T00:00:01,,8760,744,24 -n 150,4,1 1850.nc 
clm_drn.nc[] 
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[]@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@
textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex
trm '[] or
[88] [89]
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 []@texttt # Average seasonally contiguous climatological monthly means into NH
 winter[] 
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 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n
c ANN.nc[] 
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 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl
m_??.nc ANN.nc[] 
[99]
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 []@texttt # Average seasonally discontiguous diurnally resolved means into a s
eason[] 
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 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n
c ANN.nc[] 
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 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli
matology[] 
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 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl
m_??.nc ANN.nc[] 
[100] [101]
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[102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
[114] [115] [116] </builddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_dfl.png>
[117] [118]
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[119] [120] </builddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_bz2.png> [121] </bu
ilddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_zst.png> [122] [123] [124] [125]
[126]
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[]@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm-
[128] [129] [130] [131]
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 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h
0.0001-01.nc[] 
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 [][] 
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 []      @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size-
1))' \[] 
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 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in
.nc out.nc[] 
[146] [147] [148] [149]
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 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 
273.9, 274[] 
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 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 
273.9, 274[] 
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 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te
mperature data[] 
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 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i
n.nc ~/foo.nc[] 
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 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt
h1.nc[] 
[150]
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 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt
h1.nc[] 
[151]
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 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc 
in.nc[] 
[152] [153] [154]
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 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n
c out.nc[] 
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[157] [158]
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@texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell
[]@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te
xttt dcEdge[]@textrm ,
[159] [160] [161] [162] Chapter 4
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@texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by
[163] [164] [165]
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 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [
--hdr_pad @textttsl nbr@texttt ] [--hpss][] 
[166] [167] [168] [169] [170]
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 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime
nsion)[] 
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 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size 
is fixed[] 
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 [][] 
[173]
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 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi-
dimensional output[] 
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 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24
.5,26.5,28.5[] 
[174]
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 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636
, 14.13716 ;[] 
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 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc 
foo.nc[] 
[188] [189]
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 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n
3 type double[] 
[190] [191]
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[]@textrm Consider ir-reg-u-
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[192]
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[193]
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 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/
nco/data:"[] 
[194]
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 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s
rt_map[] 
[195] [196] [197]
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 []@texttt //print("sorted time (ascending order) and associated sort map =\n")
;print(time);print(srt_map);[] 
[198]
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 []   @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re
sizes)[] 
[199] [200]
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 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min
 && XLONG <= lon_max);[] 
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 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_
in_x,grid_in_y)[] 
[205] [206] [207] [208]
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 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| 
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 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| 
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@textrm gsl[]sf[]coulomb[]wave[]FGp[]array| 
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@textrm gsl[]sf[]coulomb[]wave[]sphF[]array| 
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@textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| 
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 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)|
 
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@textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| 
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 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]
expr)| 
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 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| 
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@textrm gsl[]sf[]legendre[]Plm[]deriv[]array| 
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 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| 
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@textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| 
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@textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| 
[209] [210] [211] [212] [213] [214] [215] [216]
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[]@texttt status=@textbf gsl[]fit[]linear
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[]@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri
de_w,data_y,stride_
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[]@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_
w,data_y,stride_
[217]
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 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri
de, size_t n, double mean);[] 
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 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s
ize_t stride, size_t n);[] 
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 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si
ze_t stride, size_t n, double f) ;[] 
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 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m
ean);[] 
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 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st
ride, n, var_mean);[] 
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 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st
ride, n, var_f) ;[] 
[219] [220]
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 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639
02, 7730127, 15531355, 10387694 ;[] 
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 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n
c foo.nc[] 
[221] [222] [223] [224]
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 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text
rm , $@texti e[]$@textrm . Ex-am-ple:
[225]
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 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t
extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple:
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 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl
 x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple:
[226] [227]
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 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14.
50, 15.00};[] 
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 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05
458, 37.39353, 43.29914, 49.55782 ;[] 
[229] [230] [231] [232] [233] [234] [235]
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 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl
b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] 
[237] [238] [239] [240] [241]
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 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ]
 [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts
l yr_end@texttt ][] 
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 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n
tv_tms] [--no_stg_grd] [--no_stdin][] 
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 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso
ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][]
 
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 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio]
 [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio
n][] 
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 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o
utput=drc_out[] 
[242] [243] [244] [245] [246] [247] [248] [249] [250]
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 []@texttt ncclimo --seasons=none ...            # Produce only monthly climos[
] 
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 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN
N[] 
[251] [252] [253]
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 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr
c_out[] 
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 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o
 $drc_out < foo[] 
[254]
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 [][] 
[255]
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 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl -
O drc_rgr[] 
[256] [257]
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 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm -
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 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm -
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma
p.nc \[] 
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg
r_prv -r map.nc[] 
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg
r -r map.nc \[] 
[258]
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 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu
 -N ncclimo[] 
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 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc
climo[] 
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 []@texttt salloc  -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na
me=ncclimo[] 
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 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc
limo \[] 
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[265] [266] [267] [268]
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 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt
 ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt
sl sz_lmn@texttt ][] 
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 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf
x sfx][] 
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 []@texttt [-O] [-o @textttsl output-
[269] [270] [271]
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 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w
eights[] 
[272] [273] [274]
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 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em
issions.nc[] 
[275] [276] [277]
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 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[]
 
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 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_
rec_var[] 
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 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n
c[] 
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 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
[] 
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 []@texttt <ncml:values separator="*">1964-03-13T21:09:0.000000</ncml:values>[]
 
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 []@texttt ncgen      -b -o hdf.hdf hdf.cdl # HDF ncgen is sometimes named...nc
gen[] 
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 []@texttt ncgen      -b -o in.hdf  in.cdl  # Fails: Some valid netCDF CDL brea
ks HDF ncgen[] 
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 []@texttt hncgen     -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p
ackages[] 
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 []@texttt h4_ncgen   -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda
 packages[] 
[286]
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 []@texttt ncgen-hdf  -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De
bian packages[] 
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 []@texttt hdp dumpsds hdf.hdf              # ncdump/h5dump-equivalent for HDF4
[] 
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 []@texttt h4_ncdump dumpsds hdf.hdf        # ncdump/h5dump-equivalent for HDF4
[] 
[287]
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 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out
.nc[] 
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 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0.
123456789[] 
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 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567,
 0.12345678, 0.123456789 ;[] 
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 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0
.123 ;[] 
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 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc
edrm NcML[] @textrm out-put:
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[295]
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 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/
/' | sort[] 
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 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" |
 cut -f 11- -d ' ' | sort[] 
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 []@texttt # Change values to be sure original values are not copied in followi
ng step[] 
[299] [300] [301]
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 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [-
v @textttsl var@texttt [,[]]] [-X ...] [-x][] 
[302] [303]
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 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex
ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[],
[304]
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 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex
ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[],
[305] [306] [307] [308] [309]
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@texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr
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 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio
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c # Manual[] 
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\smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s
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) localization, formatting, and turning on texinfo input format.) (./nco.aux)
(/builddir/build/BUILD/nco-5.1.5/doc/my-bib-macros.texi) [1{/usr/share/texlive/
texmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (./nco.toc [-1] [-2]
[-3] [-4]) [-5] [-6] (./nco.toc) (./nco.toc) (Foreword) [1] [2] (Summary)
[3] [4] Chapter 1 [5] [6] [7] [8] [9] [10] [11] [12] [13]
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 []@texttt ncks        fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF
 4.3.1+)[] 
[14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26]
Chapter 3 [27] [28] [29] [30] [31] [32]
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 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.
dailyavgs/surface/pres.sfc.1969.nc ~/foo.nc[] 
[41]
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 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope
ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] 
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 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u
_velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof
s_glo_2ds_forecast_daily_prog ~/foo.nc[] 
[42]
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 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.
dailyavgs/surface \[] 
[43] [44] [45] [46]
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 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato
mic types[] 
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 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces
m to /[] 
[58]
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[64] [65] [66] [67] [68] [69] [70]
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[]@textrm Long op-tions: `@texttt --mro[]@textrm '[] `@texttt --dimension
[71]
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 []@texttt ncra -O -d time,1850-03-01T00:00:01,,8760,744,24 -n 150,4,1 1850.nc 
clm_drn.nc[] 
[72] [73] [74] [75] [76] [77] [78] [79] [80] [81]
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[87]
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[]@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@
textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex
trm '[] or
[88] [89]
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 []@texttt # Average seasonally contiguous climatological monthly means into NH
 winter[] 
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 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n
c ANN.nc[] 
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 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl
m_??.nc ANN.nc[] 
[99]
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 []@texttt # Average seasonally discontiguous diurnally resolved means into a s
eason[] 
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 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n
c ANN.nc[] 
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 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli
matology[] 
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 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl
m_??.nc ANN.nc[] 
[100] [101]
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[102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113]
[114] [115] [116] </builddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_dfl.png>
[117] [118]
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[119] [120] </builddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_bz2.png> [121] </bu
ilddir/build/BUILD/nco-5.1.5/doc/fgr/qnt_cr_zst.png> [122] [123] [124] [125]
[126]
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[]@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm-
[128] [129] [130] [131]
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 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h
0.0001-01.nc[] 
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 []      @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size-
1))' \[] 
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 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in
.nc out.nc[] 
[146] [147] [148] [149]
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 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 
273.9, 274[] 
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 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 
273.9, 274[] 
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 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te
mperature data[] 
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 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i
n.nc ~/foo.nc[] 
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 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt
h1.nc[] 
[150]
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 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt
h1.nc[] 
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 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc 
in.nc[] 
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c out.nc[] 
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@texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell
[]@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te
xttt dcEdge[]@textrm ,
[159] [160] [161] [162] Chapter 4
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@texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by
[163] [164] [165]
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 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [
--hdr_pad @textttsl nbr@texttt ] [--hpss][] 
[166] [167] [168] [169] [170]
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 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime
nsion)[] 
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 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size 
is fixed[] 
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[173]
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 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi-
dimensional output[] 
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 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24
.5,26.5,28.5[] 
[174]
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 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636
, 14.13716 ;[] 
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 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc 
foo.nc[] 
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 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n
3 type double[] 
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[]@textrm Consider ir-reg-u-
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[193]
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 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/
nco/data:"[] 
[194]
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 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s
rt_map[] 
[195] [196] [197]
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 []@texttt //print("sorted time (ascending order) and associated sort map =\n")
;print(time);print(srt_map);[] 
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 []   @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re
sizes)[] 
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 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min
 && XLONG <= lon_max);[] 
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 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_
in_x,grid_in_y)[] 
[205] [206] [207] [208]
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 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| 
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 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| 
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@textrm gsl[]sf[]coulomb[]wave[]FGp[]array| 
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@textrm gsl[]sf[]coulomb[]wave[]sphF[]array| 
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@textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| 
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 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| 
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 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)|
 
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@textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| 
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 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]
expr)| 
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 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| 
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 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| 
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@textrm gsl[]sf[]legendre[]Plm[]deriv[]array| 
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 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| 
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@textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| 
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@textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| 
[209] [210] [211] [212] [213] [214] [215] [216]
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[]@texttt status=@textbf gsl[]fit[]linear
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[]@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri
de_w,data_y,stride_
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[]@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_
w,data_y,stride_
[217]
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[218]
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 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri
de, size_t n, double mean);[] 
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 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s
ize_t stride, size_t n);[] 
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 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si
ze_t stride, size_t n, double f) ;[] 
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 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m
ean);[] 
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 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st
ride, n, var_mean);[] 
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 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st
ride, n, var_f) ;[] 
[219] [220]
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 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639
02, 7730127, 15531355, 10387694 ;[] 
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 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n
c foo.nc[] 
[221] [222] [223] [224]
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 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text
rm , $@texti e[]$@textrm . Ex-am-ple:
[225]
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 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t
extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple:
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 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl
 x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple:
[226] [227]
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[228]
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 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14.
50, 15.00};[] 
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 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05
458, 37.39353, 43.29914, 49.55782 ;[] 
[229] [230] [231] [232] [233] [234] [235]
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 [][] 
[236]
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 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl
b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] 
[237] [238] [239] [240] [241]
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 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ]
 [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts
l yr_end@texttt ][] 
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 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n
tv_tms] [--no_stg_grd] [--no_stdin][] 
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 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso
ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][]
 
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 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio]
 [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio
n][] 
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 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o
utput=drc_out[] 
[242] [243] [244] [245] [246] [247] [248] [249] [250]
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 []@texttt ncclimo --seasons=none ...            # Produce only monthly climos[
] 
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 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN
N[] 
[251] [252] [253]
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 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr
c_out[] 
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 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o
 $drc_out < foo[] 
[254]
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 [][] 
[255]
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 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl -
O drc_rgr[] 
[256] [257]
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 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm -
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 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm -
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma
p.nc \[] 
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg
r_prv -r map.nc[] 
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 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg
r -r map.nc \[] 
[258]
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[259]
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 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu
 -N ncclimo[] 
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 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc
climo[] 
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 []@texttt salloc  -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na
me=ncclimo[] 
[260]
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 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc
limo \[] 
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[262] [263] [264]
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[265] [266] [267] [268]
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 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt
 ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt
sl sz_lmn@texttt ][] 
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 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf
x sfx][] 
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 []@texttt [-O] [-o @textttsl output-
[269] [270] [271]
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 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w
eights[] 
[272] [273] [274]
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 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em
issions.nc[] 
[275] [276] [277]
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 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[]
 
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 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_
rec_var[] 
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 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n
c[] 
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 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
[] 
[278]
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 []@texttt <ncml:values separator="*">1964-03-13T21:09:0.000000</ncml:values>[]
 
[279] [280]
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 []@texttt ncgen      -b -o hdf.hdf hdf.cdl # HDF ncgen is sometimes named...nc
gen[] 
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 []@texttt ncgen      -b -o in.hdf  in.cdl  # Fails: Some valid netCDF CDL brea
ks HDF ncgen[] 
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 []@texttt hncgen     -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p
ackages[] 
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 []@texttt h4_ncgen   -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda
 packages[] 
[286]
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 []@texttt ncgen-hdf  -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De
bian packages[] 
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 []@texttt hdp dumpsds hdf.hdf              # ncdump/h5dump-equivalent for HDF4
[] 
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 []@texttt h4_ncdump dumpsds hdf.hdf        # ncdump/h5dump-equivalent for HDF4
[] 
[287]
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 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out
.nc[] 
[288]
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 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0.
123456789[] 
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 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567,
 0.12345678, 0.123456789 ;[] 
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 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0
.123 ;[] 
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[294]
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 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc
edrm NcML[] @textrm out-put:
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[295]
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 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/
/' | sort[] 
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 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" |
 cut -f 11- -d ' ' | sort[] 
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[296]
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ng step[] 
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][] 
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@texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr
m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n
EdgesOnCell[]@textrm ,
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 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio
LayersP1,nAlgaeIceLayers,nDisIronIceLayers,nIceLayers,maxEdges,MaxEdges2,nCateg
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c # Manual[] 
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[364] [365] [366] [367] Chapter 5 [368] [369] [370] [371] Chapter 6 [372]
[373] Chapter 7 [374] (/builddir/build/BUILD/nco-5.1.5/doc/xmp/cmb_fl.sh
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) Chapter 8 [399] [400]
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Chapter 9 [401] [402]
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[408] Chapter 10 [409] [410] (General Index) [411] [412] (./nco.cps [413]
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\smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s
mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave
\smalltt ][] 
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smalltt ][] 
[414] [415] [416] [417] [418]
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\smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s
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[419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430]
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\smalltt QuantizeBitGroomRoundNumberOfSignificantDigits[] 
[431]
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[432] [433] [434]) [435] [436] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsf
onts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti8
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></
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are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/te
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exmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on nco.pdf (444 pages, 2013644 bytes).
Transcript written on nco.log.
make: Leaving directory '/builddir/build/BUILD/nco-5.1.5/doc'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wuggmN
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64
++ dirname /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd nco-5.1.5
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64 'INSTALL=/usr/bin/install -p'
Making install in data
make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/data'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin'
 /usr/bin/install -p ncclimo ncremap ncz2psx '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/data'
Making install in src
make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src'
Making install in nco
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64'
 /bin/sh ../../libtool --tag=CXX   --mode=install /usr/bin/install -p   libnco.la '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64'
libtool: install: /usr/bin/install -p .libs/libnco-5.1.5.so /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco-5.1.5.so
libtool: install: (cd /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64 && { ln -s -f libnco-5.1.5.so libnco.so || { rm -f libnco.so && ln -s libnco-5.1.5.so libnco.so; }; })
libtool: install: /usr/bin/install -p .libs/libnco.lai /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco.la
libtool: install: /usr/bin/install -p .libs/libnco.a /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco.a
libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco.a
libtool: install: ranlib /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco.a
libtool: warning: remember to run 'libtool --finish /usr/lib64'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin'
  /bin/sh ../../libtool --tag=CXX   --mode=install /usr/bin/install -p ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin'
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncatted /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncatted
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncbo /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncbo
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncecat /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncecat
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncflint /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncflint
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncks /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncks
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncpdq /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncpdq
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncra /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncra
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncrename /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncrename
libtool: warning: 'libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncwa /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncwa
/usr/bin/make  install-exec-hook
make[4]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
cd /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff)
cd /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea)
cd /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces)
cd /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat)
make[4]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco'
Making install in nco++
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin'
  /bin/sh ../../libtool --tag=CXX   --mode=install /usr/bin/install -p ncap2 '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin'
libtool: warning: '../nco/libnco.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ncap2 /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncap2
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src/nco++'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src'
make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.5/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src'
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src'
make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/src'
Making install in man
make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.5/man'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/man'
make[2]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/man/man1'
 /usr/bin/install -p -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncpdq.1 ncra.1 ncrcat.1 ncremap.1 ncrename.1 ncwa.1 ncz2psx.1 '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/man/man1'
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/man'
make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/man'
Making install in doc
make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.5/doc'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5/doc'
make[2]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/info'
 /usr/bin/install -p -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/info'
 install-info --info-dir='/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/info' '/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/info/nco.info'
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/doc'
make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.5/doc'
make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.5'
make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.5'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.5'
make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.5'
+ rm /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco.la
+ rm -f /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/info/dir
+ chrpath -d -k /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncap2 /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncatted /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncbo /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncclimo /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncdiff /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncea /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncecat /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/nces /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncflint /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncks /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncpdq /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncra /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncrcat /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncremap /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncrename /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncwa /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncz2psx
`/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncclimo' probably isn't an ELF file.
elf_open: Exec format error
`/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncremap' probably isn't an ELF file.
elf_open: Exec format error
`/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncz2psx' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 5.1.5-1.fc39 --unique-debug-suffix -5.1.5-1.fc39.x86_64 --unique-debug-src-base nco-5.1.5-1.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/nco-5.1.5
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncatted
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncap2
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncbo
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncecat
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncflint
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncks
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncpdq
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncra
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncrename
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/bin/ncwa
extracting debug info from /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/lib64/libnco-5.1.5.so
original debug info size: 16256kB, size after compression: 14880kB
/usr/bin/sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match.
cpio: src/nco/ncap_yacc.h: Cannot stat: No such file or directory
cpio: src/nco/ncap_yacc.y: Cannot stat: No such file or directory
12372 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ncz2psx from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/bin/ncremap from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/bin/ncclimo from /usr/bin/env bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: nco-5.1.5-1.fc39.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xjCkWh
+ umask 022
+ cd /builddir/build/BUILD
+ cd nco-5.1.5
+ DOCDIR=/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr README README.md /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/rtfm.txt /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/nco.html /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/nco.pdf /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/nco.css /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/index.shtml /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/TODO /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/ChangeLog /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/nco.png /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/nco_news.shtml /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ cp -pr doc/nsf.png /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/doc/nco
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rI9TOH
+ umask 022
+ cd /builddir/build/BUILD
+ cd nco-5.1.5
+ LICENSEDIR=/builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/licenses/nco
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/licenses/nco
+ cp -pr doc/LICENSE /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64/usr/share/licenses/nco
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libnco-5.1.5.so()(64bit) nco = 5.1.5-1.fc39 nco(x86-64) = 5.1.5-1.fc39
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: /usr/bin/bash glibc >= 2.37.9000-3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcurl.so.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libnco-5.1.5.so()(64bit) libnetcdf.so.19()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libudunits2.so.0()(64bit) rtld(GNU_HASH)
Processing files: nco-devel-5.1.5-1.fc39.x86_64
Provides: nco-devel = 5.1.5-1.fc39 nco-devel(x86-64) = 5.1.5-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: nco-static-5.1.5-1.fc39.x86_64
Provides: nco-static = 5.1.5-1.fc39 nco-static(x86-64) = 5.1.5-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: nco-debugsource-5.1.5-1.fc39.x86_64
Provides: nco-debugsource = 5.1.5-1.fc39 nco-debugsource(x86-64) = 5.1.5-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: nco-debuginfo-5.1.5-1.fc39.x86_64
Provides: debuginfo(build-id) = 004a6d55bd49c36ef007d79092070cba83b812e3 debuginfo(build-id) = 10dda21ee552601a6694486af9f0d2b1fdd43334 debuginfo(build-id) = 25add0178ef4acd9702f73dbf8ec05f515dea41e debuginfo(build-id) = 30e2c223b3c26049b35edc8901a531d0c20574e8 debuginfo(build-id) = 3f604d80bcd6c478e7f51a035cc7927c448edac8 debuginfo(build-id) = 5318fe9dc0d345e33e39e7b763abe4a20a2d3b1f debuginfo(build-id) = 6617a7ae3ff56dd1cee092cbce2bc36f104585de debuginfo(build-id) = 6cdf19c730f7ee6bc5828bf6376c9c1e9d8cf8e9 debuginfo(build-id) = a75d04f28dbc23006bd6e4dc75ed2373f1e486c7 debuginfo(build-id) = cb9d7b3897dab4d59acbba9c091c446ddf9747cd debuginfo(build-id) = d8c30eb1def4f5527c472709b98f6e3f2c44f2dc libnco-5.1.5.so-5.1.5-1.fc39.x86_64.debug()(64bit) nco-debuginfo = 5.1.5-1.fc39 nco-debuginfo(x86-64) = 5.1.5-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: nco-debugsource(x86-64) = 5.1.5-1.fc39
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64
Wrote: /builddir/build/RPMS/nco-5.1.5-1.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/nco-debuginfo-5.1.5-1.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/nco-static-5.1.5-1.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/nco-devel-5.1.5-1.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/nco-debugsource-5.1.5-1.fc39.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.EcoLSy
+ umask 022
+ cd /builddir/build/BUILD
+ cd nco-5.1.5
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/nco-5.1.5-1.fc39.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Caqcvz
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf nco-5.1.5 nco-5.1.5.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Child return code was: 0