Warning: Permanently added '34.203.224.62' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4331524 --chroot fedora-rawhide-aarch64 --detached Version: 0.57 PID: 7845 Logging PID: 7846 Task: {'appstream': True, 'background': False, 'build_id': 4331524, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '013db455793469ea6596a8a8817c7a16b65fddb1', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/orion/openmpi5/bionetgen', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bionetgen', 'package_version': '2.7.0-2.fc37', 'project_dirname': 'openmpi5', 'project_name': 'openmpi5', 'project_owner': 'orion', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/orion/openmpi5/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'orion/openmpi5--orion', 'source_json': {}, 'source_type': None, 'submitter': 'orion', 'tags': [], 'task_id': '4331524-fedora-rawhide-aarch64', 'timeout': 96000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/orion/openmpi5/bionetgen /var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/orion/openmpi5/bionetgen', '/var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen'... Running: git checkout 013db455793469ea6596a8a8817c7a16b65fddb1 cmd: ['git', 'checkout', '013db455793469ea6596a8a8817c7a16b65fddb1'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen rc: 0 stdout: stderr: Note: switching to '013db455793469ea6596a8a8817c7a16b65fddb1'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 013db45 automatic import of bionetgen Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Downloading bionetgen-BioNetGen-2.7.0.tar.gz INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.7.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/orion/openmpi5/bionetgen/bionetgen-BioNetGen-2.7.0.tar.gz/md5/0f4557a9ae05ec3ae84b5608d3575459/bionetgen-BioNetGen-2.7.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 23.7M 100 23.7M 0 0 103M 0 --:--:-- --:--:-- --:--:-- 104M INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.7.0.tar.gz Running (timeout=96000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1650942749.139944 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.0 starting (python version = 3.10.2, NVR = mock-3.0-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen/bionetgen.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1650942749.139944/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.0 INFO: Mock Version: 3.0 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 8.0 MB/s | 704 kB 00:00 fedora 13 MB/s | 60 MB 00:04 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.11.1-2.fc37 fedora 454 k dnf-plugins-core noarch 4.1.0-1.fc37 fedora 34 k Installing dependencies: alternatives aarch64 1.19-2.fc36 fedora 35 k audit-libs aarch64 3.0.8-1.fc37 fedora 116 k basesystem noarch 11-13.fc36 fedora 7.0 k bash aarch64 5.1.16-2.fc36 fedora 1.6 M bzip2-libs aarch64 1.0.8-11.fc36 fedora 43 k ca-certificates noarch 2021.2.52-3.fc36 fedora 367 k coreutils aarch64 9.1-2.fc37 fedora 1.0 M coreutils-common aarch64 9.1-2.fc37 fedora 2.0 M crypto-policies noarch 20220412-1.git97fe449.fc37 fedora 58 k curl aarch64 7.82.0-2.fc37 fedora 305 k cyrus-sasl-lib aarch64 2.1.28-1.fc37 fedora 777 k dbus-libs aarch64 1:1.14.0-1.fc37 fedora 153 k dnf-data noarch 4.11.1-2.fc37 fedora 42 k elfutils-default-yama-scope noarch 0.186-5.fc37 fedora 16 k elfutils-libelf aarch64 0.186-5.fc37 fedora 196 k elfutils-libs aarch64 0.186-5.fc37 fedora 254 k expat aarch64 2.4.8-1.fc37 fedora 105 k fedora-gpg-keys noarch 37-0.1 fedora 115 k fedora-release noarch 37-0.3 fedora 12 k fedora-release-common noarch 37-0.3 fedora 22 k fedora-release-identity-basic noarch 37-0.3 fedora 13 k fedora-repos noarch 37-0.1 fedora 11 k fedora-repos-rawhide noarch 37-0.1 fedora 10 k file-libs aarch64 5.41-5.fc37 fedora 633 k filesystem aarch64 3.16-2.fc36 fedora 1.1 M findutils aarch64 1:4.9.0-1.fc36 fedora 484 k gawk aarch64 5.1.1-3.fc37 fedora 1.0 M gdbm-libs aarch64 1:1.22-2.fc36 fedora 58 k glib2 aarch64 2.72.1-1.fc37 fedora 2.6 M glibc aarch64 2.35.9000-14.fc37 fedora 1.7 M glibc-common aarch64 2.35.9000-14.fc37 fedora 330 k glibc-minimal-langpack aarch64 2.35.9000-14.fc37 fedora 60 k gmp aarch64 1:6.2.1-2.fc36 fedora 265 k gnupg2 aarch64 2.3.4-2.fc36 fedora 2.5 M gnutls aarch64 3.7.3-2.fc36 fedora 1.0 M gpgme aarch64 1.17.0-2.fc37 fedora 205 k grep aarch64 3.7-2.fc36 fedora 260 k ima-evm-utils aarch64 1.4-5.fc36 fedora 63 k json-c aarch64 0.15-3.fc36 fedora 43 k keyutils-libs aarch64 1.6.1-4.fc36 fedora 31 k krb5-libs aarch64 1.19.2-9.fc37 fedora 728 k libacl aarch64 2.3.1-3.fc36 fedora 24 k libarchive aarch64 3.6.1-1.fc37 fedora 391 k libassuan aarch64 2.5.5-4.fc36 fedora 66 k libattr aarch64 2.5.1-4.fc36 fedora 18 k libblkid aarch64 2.38-3.fc37 fedora 106 k libbrotli aarch64 1.0.9-7.fc36 fedora 317 k libcap aarch64 2.48-4.fc36 fedora 67 k libcap-ng aarch64 0.8.3-1.fc37 fedora 32 k libcom_err aarch64 1.46.5-2.fc36 fedora 25 k libcomps aarch64 0.1.18-2.fc36 fedora 74 k libcurl aarch64 7.82.0-2.fc37 fedora 294 k libdnf aarch64 0.66.0-1.fc37 fedora 613 k libevent aarch64 2.1.12-6.fc36 fedora 254 k libffi aarch64 3.4.2-8.fc36 fedora 36 k libfsverity aarch64 1.4-7.fc36 fedora 19 k libgcc aarch64 12.0.1-0.16.fc37 fedora 87 k libgcrypt aarch64 1.10.1-2.fc37 fedora 449 k libgomp aarch64 12.0.1-0.16.fc37 fedora 285 k libgpg-error aarch64 1.45-1.fc37 fedora 220 k libidn2 aarch64 2.3.2-4.fc36 fedora 104 k libksba aarch64 1.6.0-3.fc36 fedora 154 k libmodulemd aarch64 2.14.0-2.fc36 fedora 209 k libmount aarch64 2.38-3.fc37 fedora 133 k libnghttp2 aarch64 1.47.0-1.fc37 fedora 70 k libnsl2 aarch64 2.0.0-3.fc36 fedora 30 k libpsl aarch64 0.21.1-5.fc36 fedora 64 k librepo aarch64 1.14.2-2.fc36 fedora 92 k libreport-filesystem noarch 2.17.1-1.fc37 fedora 14 k libselinux aarch64 3.3-4.fc36 fedora 84 k libsemanage aarch64 3.3-3.fc37 fedora 116 k libsepol aarch64 3.3-3.fc36 fedora 297 k libsigsegv aarch64 2.14-2.fc36 fedora 27 k libsmartcols aarch64 2.38-3.fc37 fedora 63 k libsolv aarch64 0.7.22-1.fc37 fedora 389 k libssh aarch64 0.9.6-4.fc36 fedora 202 k libssh-config noarch 0.9.6-4.fc36 fedora 7.6 k libstdc++ aarch64 12.0.1-0.16.fc37 fedora 735 k libtasn1 aarch64 4.18.0-2.fc36 fedora 74 k libtirpc aarch64 1.3.2-1.rc1.fc36.1 fedora 94 k libunistring aarch64 1.0-1.fc36 fedora 544 k libuuid aarch64 2.38-3.fc37 fedora 28 k libverto aarch64 0.3.2-3.fc36 fedora 21 k libxcrypt aarch64 4.4.28-1.fc37 fedora 122 k libxml2 aarch64 2.9.13-1.fc37 fedora 734 k libyaml aarch64 0.2.5-7.fc36 fedora 59 k libzstd aarch64 1.5.2-1.fc36 fedora 267 k lua-libs aarch64 5.4.4-2.fc37 fedora 212 k lz4-libs aarch64 1.9.3-4.fc36 fedora 70 k mpdecimal aarch64 2.5.1-3.fc36 fedora 102 k mpfr aarch64 4.1.0-9.fc36 fedora 240 k ncurses-base noarch 6.3-1.20220416.fc37 fedora 61 k ncurses-libs aarch64 6.3-1.20220416.fc37 fedora 318 k nettle aarch64 3.7.3-3.fc36 fedora 405 k npth aarch64 1.6-8.fc36 fedora 24 k openldap aarch64 2.6.1-2.fc36 fedora 249 k openldap-compat aarch64 2.6.1-2.fc36 fedora 19 k openssl-libs aarch64 1:3.0.2-3.fc37 fedora 2.0 M p11-kit aarch64 0.24.1-2.fc36 fedora 347 k p11-kit-trust aarch64 0.24.1-2.fc36 fedora 138 k pcre aarch64 8.45-1.fc36.1 fedora 184 k pcre2 aarch64 10.39-1.fc36.1 fedora 212 k pcre2-syntax noarch 10.39-1.fc36.1 fedora 143 k popt aarch64 1.18-7.fc36 fedora 59 k publicsuffix-list-dafsa noarch 20210518-4.fc36 fedora 58 k python-pip-wheel noarch 22.0.4-1.fc37 fedora 1.5 M python-setuptools-wheel noarch 60.9.3-2.fc37 fedora 608 k python3 aarch64 3.10.4-1.fc37 fedora 27 k python3-dateutil noarch 1:2.8.2-1.fc37 fedora 309 k python3-dbus aarch64 1.2.18-3.fc36 fedora 132 k python3-distro noarch 1.7.0-1.fc37 fedora 39 k python3-dnf noarch 4.11.1-2.fc37 fedora 414 k python3-dnf-plugins-core noarch 4.1.0-1.fc37 fedora 220 k python3-gpg aarch64 1.17.0-2.fc37 fedora 260 k python3-hawkey aarch64 0.66.0-1.fc37 fedora 101 k python3-libcomps aarch64 0.1.18-2.fc36 fedora 48 k python3-libdnf aarch64 0.66.0-1.fc37 fedora 743 k python3-libs aarch64 3.10.4-1.fc37 fedora 7.3 M python3-rpm aarch64 4.17.0-10.fc37 fedora 94 k python3-six noarch 1.16.0-5.fc36 fedora 36 k readline aarch64 8.1-6.fc36 fedora 209 k rpm aarch64 4.17.0-10.fc37 fedora 539 k rpm-build-libs aarch64 4.17.0-10.fc37 fedora 91 k rpm-libs aarch64 4.17.0-10.fc37 fedora 307 k rpm-sign-libs aarch64 4.17.0-10.fc37 fedora 27 k sed aarch64 4.8-10.fc36 fedora 295 k setup noarch 2.13.9.1-3.fc36 fedora 143 k shadow-utils aarch64 2:4.11.1-2.fc37 fedora 1.1 M sqlite-libs aarch64 3.38.2-1.fc37 fedora 653 k systemd-libs aarch64 251~rc1-3.fc37 fedora 586 k tpm2-tss aarch64 3.2.0-1.fc37 fedora 550 k tzdata noarch 2022a-1.fc37 fedora 432 k xz-libs aarch64 5.2.5-9.fc37 fedora 90 k zchunk-libs aarch64 1.2.2-1.fc37 fedora 51 k zlib aarch64 1.2.11-31.fc36 fedora 90 k Transaction Summary ================================================================================ Install 137 Packages Total download size: 50 M Installed size: 189 M Downloading Packages: (1/137): alternatives-1.19-2.fc36.aarch64.rpm 823 kB/s | 35 kB 00:00 (2/137): audit-libs-3.0.8-1.fc37.aarch64.rpm 2.5 MB/s | 116 kB 00:00 (3/137): basesystem-11-13.fc36.noarch.rpm 152 kB/s | 7.0 kB 00:00 (4/137): bzip2-libs-1.0.8-11.fc36.aarch64.rpm 7.4 MB/s | 43 kB 00:00 (5/137): bash-5.1.16-2.fc36.aarch64.rpm 89 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python-setuptools-wheel-60.9.3-2.fc3 61 MB/s | 608 kB 00:00 (109/137): python3-3.10.4-1.fc37.aarch64.rpm 2.8 MB/s | 27 kB 00:00 (110/137): python-pip-wheel-22.0.4-1.fc37.noarc 75 MB/s | 1.5 MB 00:00 (111/137): python3-dbus-1.2.18-3.fc36.aarch64.r 21 MB/s | 132 kB 00:00 (112/137): python3-distro-1.7.0-1.fc37.noarch.r 6.1 MB/s | 39 kB 00:00 (113/137): python3-dnf-plugins-core-4.1.0-1.fc3 12 MB/s | 220 kB 00:00 (114/137): python3-dnf-4.11.1-2.fc37.noarch.rpm 15 MB/s | 414 kB 00:00 (115/137): python3-dateutil-2.8.2-1.fc37.noarch 7.6 MB/s | 309 kB 00:00 (116/137): python3-hawkey-0.66.0-1.fc37.aarch64 15 MB/s | 101 kB 00:00 (117/137): python3-libcomps-0.1.18-2.fc36.aarch 3.3 MB/s | 48 kB 00:00 (118/137): python3-gpg-1.17.0-2.fc37.aarch64.rp 11 MB/s | 260 kB 00:00 (119/137): python3-rpm-4.17.0-10.fc37.aarch64.r 7.5 MB/s | 94 kB 00:00 (120/137): python3-six-1.16.0-5.fc36.noarch.rpm 6.4 MB/s | 36 kB 00:00 (121/137): readline-8.1-6.fc36.aarch64.rpm 34 MB/s | 209 kB 00:00 (122/137): rpm-4.17.0-10.fc37.aarch64.rpm 73 MB/s | 539 kB 00:00 (123/137): rpm-build-libs-4.17.0-10.fc37.aarch6 26 MB/s | 91 kB 00:00 (124/137): rpm-libs-4.17.0-10.fc37.aarch64.rpm 55 MB/s | 307 kB 00:00 (125/137): rpm-sign-libs-4.17.0-10.fc37.aarch64 10 MB/s | 27 kB 00:00 (126/137): sed-4.8-10.fc36.aarch64.rpm 39 MB/s | 295 kB 00:00 (127/137): setup-2.13.9.1-3.fc36.noarch.rpm 29 MB/s | 143 kB 00:00 (128/137): python3-libdnf-0.66.0-1.fc37.aarch64 9.0 MB/s | 743 kB 00:00 (129/137): shadow-utils-4.11.1-2.fc37.aarch64.r 78 MB/s | 1.1 MB 00:00 (130/137): sqlite-libs-3.38.2-1.fc37.aarch64.rp 49 MB/s | 653 kB 00:00 (131/137): tpm2-tss-3.2.0-1.fc37.aarch64.rpm 55 MB/s | 550 kB 00:00 (132/137): tzdata-2022a-1.fc37.noarch.rpm 34 MB/s | 432 kB 00:00 (133/137): xz-libs-5.2.5-9.fc37.aarch64.rpm 18 MB/s | 90 kB 00:00 (134/137): zchunk-libs-1.2.2-1.fc37.aarch64.rpm 11 MB/s | 51 kB 00:00 (135/137): systemd-libs-251~rc1-3.fc37.aarch64. 13 MB/s | 586 kB 00:00 (136/137): zlib-1.2.11-31.fc36.aarch64.rpm 22 MB/s | 90 kB 00:00 (137/137): python3-libs-3.10.4-1.fc37.aarch64.r 28 MB/s | 7.3 MB 00:00 -------------------------------------------------------------------------------- Total 40 MB/s | 50 MB 00:01 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary (0x5323552A) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x38AB71F4: Userid : "Fedora (36) " Fingerprint: 53DE D2CB 922D 8B8D 9E63 FD18 999F 7CBF 38AB 71F4 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-36-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-2.fc36.aarch64 1/1 Preparing : 1/1 Installing : libgcc-12.0.1-0.16.fc37.aarch64 1/137 Running scriptlet: libgcc-12.0.1-0.16.fc37.aarch64 1/137 Installing : crypto-policies-20220412-1.git97fe449.fc37.noarc 2/137 Running scriptlet: crypto-policies-20220412-1.git97fe449.fc37.noarc 2/137 Installing : tzdata-2022a-1.fc37.noarch 3/137 Installing : fedora-release-identity-basic-37-0.3.noarch 4/137 Installing : python-setuptools-wheel-60.9.3-2.fc37.noarch 5/137 Installing : publicsuffix-list-dafsa-20210518-4.fc36.noarch 6/137 Installing : pcre2-syntax-10.39-1.fc36.1.noarch 7/137 Installing : ncurses-base-6.3-1.20220416.fc37.noarch 8/137 Installing : libssh-config-0.9.6-4.fc36.noarch 9/137 Installing : libreport-filesystem-2.17.1-1.fc37.noarch 10/137 Installing : dnf-data-4.11.1-2.fc37.noarch 11/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-37-0.1.noarch 12/137 Installing : 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Verifying : elfutils-libelf-0.186-5.fc37.aarch64 17/137 Verifying : elfutils-libs-0.186-5.fc37.aarch64 18/137 Verifying : expat-2.4.8-1.fc37.aarch64 19/137 Verifying : fedora-gpg-keys-37-0.1.noarch 20/137 Verifying : fedora-release-37-0.3.noarch 21/137 Verifying : fedora-release-common-37-0.3.noarch 22/137 Verifying : fedora-release-identity-basic-37-0.3.noarch 23/137 Verifying : fedora-repos-37-0.1.noarch 24/137 Verifying : fedora-repos-rawhide-37-0.1.noarch 25/137 Verifying : file-libs-5.41-5.fc37.aarch64 26/137 Verifying : filesystem-3.16-2.fc36.aarch64 27/137 Verifying : findutils-1:4.9.0-1.fc36.aarch64 28/137 Verifying : gawk-5.1.1-3.fc37.aarch64 29/137 Verifying : gdbm-libs-1:1.22-2.fc36.aarch64 30/137 Verifying : glib2-2.72.1-1.fc37.aarch64 31/137 Verifying : glibc-2.35.9000-14.fc37.aarch64 32/137 Verifying : glibc-common-2.35.9000-14.fc37.aarch64 33/137 Verifying : glibc-minimal-langpack-2.35.9000-14.fc37.aarch64 34/137 Verifying : gmp-1:6.2.1-2.fc36.aarch64 35/137 Verifying : gnupg2-2.3.4-2.fc36.aarch64 36/137 Verifying : gnutls-3.7.3-2.fc36.aarch64 37/137 Verifying : gpgme-1.17.0-2.fc37.aarch64 38/137 Verifying : grep-3.7-2.fc36.aarch64 39/137 Verifying : ima-evm-utils-1.4-5.fc36.aarch64 40/137 Verifying : json-c-0.15-3.fc36.aarch64 41/137 Verifying : keyutils-libs-1.6.1-4.fc36.aarch64 42/137 Verifying : krb5-libs-1.19.2-9.fc37.aarch64 43/137 Verifying : libacl-2.3.1-3.fc36.aarch64 44/137 Verifying : libarchive-3.6.1-1.fc37.aarch64 45/137 Verifying : libassuan-2.5.5-4.fc36.aarch64 46/137 Verifying : libattr-2.5.1-4.fc36.aarch64 47/137 Verifying : libblkid-2.38-3.fc37.aarch64 48/137 Verifying : libbrotli-1.0.9-7.fc36.aarch64 49/137 Verifying : libcap-2.48-4.fc36.aarch64 50/137 Verifying : libcap-ng-0.8.3-1.fc37.aarch64 51/137 Verifying : libcom_err-1.46.5-2.fc36.aarch64 52/137 Verifying : libcomps-0.1.18-2.fc36.aarch64 53/137 Verifying : libcurl-7.82.0-2.fc37.aarch64 54/137 Verifying : libdnf-0.66.0-1.fc37.aarch64 55/137 Verifying : libevent-2.1.12-6.fc36.aarch64 56/137 Verifying : libffi-3.4.2-8.fc36.aarch64 57/137 Verifying : libfsverity-1.4-7.fc36.aarch64 58/137 Verifying : libgcc-12.0.1-0.16.fc37.aarch64 59/137 Verifying : libgcrypt-1.10.1-2.fc37.aarch64 60/137 Verifying : libgomp-12.0.1-0.16.fc37.aarch64 61/137 Verifying : libgpg-error-1.45-1.fc37.aarch64 62/137 Verifying : libidn2-2.3.2-4.fc36.aarch64 63/137 Verifying : libksba-1.6.0-3.fc36.aarch64 64/137 Verifying : libmodulemd-2.14.0-2.fc36.aarch64 65/137 Verifying : libmount-2.38-3.fc37.aarch64 66/137 Verifying : libnghttp2-1.47.0-1.fc37.aarch64 67/137 Verifying : libnsl2-2.0.0-3.fc36.aarch64 68/137 Verifying : libpsl-0.21.1-5.fc36.aarch64 69/137 Verifying : librepo-1.14.2-2.fc36.aarch64 70/137 Verifying : libreport-filesystem-2.17.1-1.fc37.noarch 71/137 Verifying : libselinux-3.3-4.fc36.aarch64 72/137 Verifying : libsemanage-3.3-3.fc37.aarch64 73/137 Verifying : libsepol-3.3-3.fc36.aarch64 74/137 Verifying : libsigsegv-2.14-2.fc36.aarch64 75/137 Verifying : libsmartcols-2.38-3.fc37.aarch64 76/137 Verifying : libsolv-0.7.22-1.fc37.aarch64 77/137 Verifying : libssh-0.9.6-4.fc36.aarch64 78/137 Verifying : libssh-config-0.9.6-4.fc36.noarch 79/137 Verifying : libstdc++-12.0.1-0.16.fc37.aarch64 80/137 Verifying : libtasn1-4.18.0-2.fc36.aarch64 81/137 Verifying : libtirpc-1.3.2-1.rc1.fc36.1.aarch64 82/137 Verifying : libunistring-1.0-1.fc36.aarch64 83/137 Verifying : libuuid-2.38-3.fc37.aarch64 84/137 Verifying : libverto-0.3.2-3.fc36.aarch64 85/137 Verifying : libxcrypt-4.4.28-1.fc37.aarch64 86/137 Verifying : libxml2-2.9.13-1.fc37.aarch64 87/137 Verifying : libyaml-0.2.5-7.fc36.aarch64 88/137 Verifying : libzstd-1.5.2-1.fc36.aarch64 89/137 Verifying : lua-libs-5.4.4-2.fc37.aarch64 90/137 Verifying : lz4-libs-1.9.3-4.fc36.aarch64 91/137 Verifying : mpdecimal-2.5.1-3.fc36.aarch64 92/137 Verifying : mpfr-4.1.0-9.fc36.aarch64 93/137 Verifying : ncurses-base-6.3-1.20220416.fc37.noarch 94/137 Verifying : ncurses-libs-6.3-1.20220416.fc37.aarch64 95/137 Verifying : nettle-3.7.3-3.fc36.aarch64 96/137 Verifying : npth-1.6-8.fc36.aarch64 97/137 Verifying : openldap-2.6.1-2.fc36.aarch64 98/137 Verifying : openldap-compat-2.6.1-2.fc36.aarch64 99/137 Verifying : openssl-libs-1:3.0.2-3.fc37.aarch64 100/137 Verifying : p11-kit-0.24.1-2.fc36.aarch64 101/137 Verifying : p11-kit-trust-0.24.1-2.fc36.aarch64 102/137 Verifying : pcre-8.45-1.fc36.1.aarch64 103/137 Verifying : pcre2-10.39-1.fc36.1.aarch64 104/137 Verifying : pcre2-syntax-10.39-1.fc36.1.noarch 105/137 Verifying : popt-1.18-7.fc36.aarch64 106/137 Verifying : publicsuffix-list-dafsa-20210518-4.fc36.noarch 107/137 Verifying : python-pip-wheel-22.0.4-1.fc37.noarch 108/137 Verifying : python-setuptools-wheel-60.9.3-2.fc37.noarch 109/137 Verifying : python3-3.10.4-1.fc37.aarch64 110/137 Verifying : python3-dateutil-1:2.8.2-1.fc37.noarch 111/137 Verifying : python3-dbus-1.2.18-3.fc36.aarch64 112/137 Verifying : python3-distro-1.7.0-1.fc37.noarch 113/137 Verifying : python3-dnf-4.11.1-2.fc37.noarch 114/137 Verifying : python3-dnf-plugins-core-4.1.0-1.fc37.noarch 115/137 Verifying : python3-gpg-1.17.0-2.fc37.aarch64 116/137 Verifying : python3-hawkey-0.66.0-1.fc37.aarch64 117/137 Verifying : python3-libcomps-0.1.18-2.fc36.aarch64 118/137 Verifying : python3-libdnf-0.66.0-1.fc37.aarch64 119/137 Verifying : python3-libs-3.10.4-1.fc37.aarch64 120/137 Verifying : python3-rpm-4.17.0-10.fc37.aarch64 121/137 Verifying : python3-six-1.16.0-5.fc36.noarch 122/137 Verifying : readline-8.1-6.fc36.aarch64 123/137 Verifying : rpm-4.17.0-10.fc37.aarch64 124/137 Verifying : rpm-build-libs-4.17.0-10.fc37.aarch64 125/137 Verifying : rpm-libs-4.17.0-10.fc37.aarch64 126/137 Verifying : rpm-sign-libs-4.17.0-10.fc37.aarch64 127/137 Verifying : sed-4.8-10.fc36.aarch64 128/137 Verifying : setup-2.13.9.1-3.fc36.noarch 129/137 Verifying : shadow-utils-2:4.11.1-2.fc37.aarch64 130/137 Verifying : sqlite-libs-3.38.2-1.fc37.aarch64 131/137 Verifying : systemd-libs-251~rc1-3.fc37.aarch64 132/137 Verifying : tpm2-tss-3.2.0-1.fc37.aarch64 133/137 Verifying : tzdata-2022a-1.fc37.noarch 134/137 Verifying : xz-libs-5.2.5-9.fc37.aarch64 135/137 Verifying : zchunk-libs-1.2.2-1.fc37.aarch64 136/137 Verifying : zlib-1.2.11-31.fc36.aarch64 137/137 Installed products updated. Installed: alternatives-1.19-2.fc36.aarch64 audit-libs-3.0.8-1.fc37.aarch64 basesystem-11-13.fc36.noarch bash-5.1.16-2.fc36.aarch64 bzip2-libs-1.0.8-11.fc36.aarch64 ca-certificates-2021.2.52-3.fc36.noarch coreutils-9.1-2.fc37.aarch64 coreutils-common-9.1-2.fc37.aarch64 crypto-policies-20220412-1.git97fe449.fc37.noarch curl-7.82.0-2.fc37.aarch64 cyrus-sasl-lib-2.1.28-1.fc37.aarch64 dbus-libs-1:1.14.0-1.fc37.aarch64 dnf-4.11.1-2.fc37.noarch dnf-data-4.11.1-2.fc37.noarch dnf-plugins-core-4.1.0-1.fc37.noarch elfutils-default-yama-scope-0.186-5.fc37.noarch elfutils-libelf-0.186-5.fc37.aarch64 elfutils-libs-0.186-5.fc37.aarch64 expat-2.4.8-1.fc37.aarch64 fedora-gpg-keys-37-0.1.noarch fedora-release-37-0.3.noarch fedora-release-common-37-0.3.noarch fedora-release-identity-basic-37-0.3.noarch fedora-repos-37-0.1.noarch fedora-repos-rawhide-37-0.1.noarch file-libs-5.41-5.fc37.aarch64 filesystem-3.16-2.fc36.aarch64 findutils-1:4.9.0-1.fc36.aarch64 gawk-5.1.1-3.fc37.aarch64 gdbm-libs-1:1.22-2.fc36.aarch64 glib2-2.72.1-1.fc37.aarch64 glibc-2.35.9000-14.fc37.aarch64 glibc-common-2.35.9000-14.fc37.aarch64 glibc-minimal-langpack-2.35.9000-14.fc37.aarch64 gmp-1:6.2.1-2.fc36.aarch64 gnupg2-2.3.4-2.fc36.aarch64 gnutls-3.7.3-2.fc36.aarch64 gpgme-1.17.0-2.fc37.aarch64 grep-3.7-2.fc36.aarch64 ima-evm-utils-1.4-5.fc36.aarch64 json-c-0.15-3.fc36.aarch64 keyutils-libs-1.6.1-4.fc36.aarch64 krb5-libs-1.19.2-9.fc37.aarch64 libacl-2.3.1-3.fc36.aarch64 libarchive-3.6.1-1.fc37.aarch64 libassuan-2.5.5-4.fc36.aarch64 libattr-2.5.1-4.fc36.aarch64 libblkid-2.38-3.fc37.aarch64 libbrotli-1.0.9-7.fc36.aarch64 libcap-2.48-4.fc36.aarch64 libcap-ng-0.8.3-1.fc37.aarch64 libcom_err-1.46.5-2.fc36.aarch64 libcomps-0.1.18-2.fc36.aarch64 libcurl-7.82.0-2.fc37.aarch64 libdnf-0.66.0-1.fc37.aarch64 libevent-2.1.12-6.fc36.aarch64 libffi-3.4.2-8.fc36.aarch64 libfsverity-1.4-7.fc36.aarch64 libgcc-12.0.1-0.16.fc37.aarch64 libgcrypt-1.10.1-2.fc37.aarch64 libgomp-12.0.1-0.16.fc37.aarch64 libgpg-error-1.45-1.fc37.aarch64 libidn2-2.3.2-4.fc36.aarch64 libksba-1.6.0-3.fc36.aarch64 libmodulemd-2.14.0-2.fc36.aarch64 libmount-2.38-3.fc37.aarch64 libnghttp2-1.47.0-1.fc37.aarch64 libnsl2-2.0.0-3.fc36.aarch64 libpsl-0.21.1-5.fc36.aarch64 librepo-1.14.2-2.fc36.aarch64 libreport-filesystem-2.17.1-1.fc37.noarch libselinux-3.3-4.fc36.aarch64 libsemanage-3.3-3.fc37.aarch64 libsepol-3.3-3.fc36.aarch64 libsigsegv-2.14-2.fc36.aarch64 libsmartcols-2.38-3.fc37.aarch64 libsolv-0.7.22-1.fc37.aarch64 libssh-0.9.6-4.fc36.aarch64 libssh-config-0.9.6-4.fc36.noarch libstdc++-12.0.1-0.16.fc37.aarch64 libtasn1-4.18.0-2.fc36.aarch64 libtirpc-1.3.2-1.rc1.fc36.1.aarch64 libunistring-1.0-1.fc36.aarch64 libuuid-2.38-3.fc37.aarch64 libverto-0.3.2-3.fc36.aarch64 libxcrypt-4.4.28-1.fc37.aarch64 libxml2-2.9.13-1.fc37.aarch64 libyaml-0.2.5-7.fc36.aarch64 libzstd-1.5.2-1.fc36.aarch64 lua-libs-5.4.4-2.fc37.aarch64 lz4-libs-1.9.3-4.fc36.aarch64 mpdecimal-2.5.1-3.fc36.aarch64 mpfr-4.1.0-9.fc36.aarch64 ncurses-base-6.3-1.20220416.fc37.noarch ncurses-libs-6.3-1.20220416.fc37.aarch64 nettle-3.7.3-3.fc36.aarch64 npth-1.6-8.fc36.aarch64 openldap-2.6.1-2.fc36.aarch64 openldap-compat-2.6.1-2.fc36.aarch64 openssl-libs-1:3.0.2-3.fc37.aarch64 p11-kit-0.24.1-2.fc36.aarch64 p11-kit-trust-0.24.1-2.fc36.aarch64 pcre-8.45-1.fc36.1.aarch64 pcre2-10.39-1.fc36.1.aarch64 pcre2-syntax-10.39-1.fc36.1.noarch popt-1.18-7.fc36.aarch64 publicsuffix-list-dafsa-20210518-4.fc36.noarch python-pip-wheel-22.0.4-1.fc37.noarch python-setuptools-wheel-60.9.3-2.fc37.noarch python3-3.10.4-1.fc37.aarch64 python3-dateutil-1:2.8.2-1.fc37.noarch python3-dbus-1.2.18-3.fc36.aarch64 python3-distro-1.7.0-1.fc37.noarch python3-dnf-4.11.1-2.fc37.noarch python3-dnf-plugins-core-4.1.0-1.fc37.noarch python3-gpg-1.17.0-2.fc37.aarch64 python3-hawkey-0.66.0-1.fc37.aarch64 python3-libcomps-0.1.18-2.fc36.aarch64 python3-libdnf-0.66.0-1.fc37.aarch64 python3-libs-3.10.4-1.fc37.aarch64 python3-rpm-4.17.0-10.fc37.aarch64 python3-six-1.16.0-5.fc36.noarch readline-8.1-6.fc36.aarch64 rpm-4.17.0-10.fc37.aarch64 rpm-build-libs-4.17.0-10.fc37.aarch64 rpm-libs-4.17.0-10.fc37.aarch64 rpm-sign-libs-4.17.0-10.fc37.aarch64 sed-4.8-10.fc36.aarch64 setup-2.13.9.1-3.fc36.noarch shadow-utils-2:4.11.1-2.fc37.aarch64 sqlite-libs-3.38.2-1.fc37.aarch64 systemd-libs-251~rc1-3.fc37.aarch64 tpm2-tss-3.2.0-1.fc37.aarch64 tzdata-2022a-1.fc37.noarch xz-libs-5.2.5-9.fc37.aarch64 zchunk-libs-1.2.2-1.fc37.aarch64 zlib-1.2.11-31.fc36.aarch64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.0 INFO: Mock Version: 3.0 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.1 MB/s | 713 kB 00:00 fedora 14 MB/s | 60 MB 00:04 Last metadata expiration check: 0:00:01 ago on Tue Apr 26 03:13:45 2022. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash aarch64 5.1.16-2.fc36 fedora 1.6 M bzip2 aarch64 1.0.8-11.fc36 fedora 52 k coreutils aarch64 9.1-2.fc37 fedora 1.0 M cpio aarch64 2.13-12.fc36 fedora 267 k diffutils aarch64 3.8-2.fc36 fedora 368 k fedora-release-common noarch 37-0.3 fedora 22 k findutils aarch64 1:4.9.0-1.fc36 fedora 484 k gawk aarch64 5.1.1-3.fc37 fedora 1.0 M glibc-minimal-langpack aarch64 2.35.9000-14.fc37 fedora 60 k grep aarch64 3.7-2.fc36 fedora 260 k gzip aarch64 1.12-1.fc37 fedora 157 k info aarch64 6.8-3.fc36 fedora 220 k patch aarch64 2.7.6-16.fc36 fedora 121 k redhat-rpm-config noarch 214-1.fc37 fedora 68 k rpm-build aarch64 4.17.0-10.fc37 fedora 61 k sed aarch64 4.8-10.fc36 fedora 295 k shadow-utils aarch64 2:4.11.1-2.fc37 fedora 1.1 M tar aarch64 2:1.34-3.fc36 fedora 868 k unzip aarch64 6.0-57.fc36 fedora 182 k util-linux aarch64 2.38-3.fc37 fedora 2.3 M which aarch64 2.21-33.fc37 fedora 41 k xz aarch64 5.2.5-9.fc37 fedora 215 k Installing dependencies: alternatives aarch64 1.19-2.fc36 fedora 35 k audit-libs aarch64 3.0.8-1.fc37 fedora 116 k authselect aarch64 1.3.0-10.fc37 fedora 135 k authselect-libs aarch64 1.3.0-10.fc37 fedora 223 k basesystem noarch 11-13.fc36 fedora 7.0 k binutils aarch64 2.38-8.fc37 fedora 5.8 M binutils-gold aarch64 2.38-8.fc37 fedora 898 k bzip2-libs aarch64 1.0.8-11.fc36 fedora 43 k ca-certificates noarch 2021.2.52-3.fc36 fedora 367 k coreutils-common aarch64 9.1-2.fc37 fedora 2.0 M cracklib aarch64 2.9.6-28.fc36 fedora 82 k crypto-policies noarch 20220412-1.git97fe449.fc37 fedora 58 k curl aarch64 7.82.0-2.fc37 fedora 305 k cyrus-sasl-lib aarch64 2.1.28-1.fc37 fedora 777 k debugedit aarch64 5.0-3.fc36 fedora 76 k dwz aarch64 0.14-2.fc35 fedora 125 k ed aarch64 1.14.2-12.fc36 fedora 73 k efi-srpm-macros noarch 5-5.fc36 fedora 22 k elfutils aarch64 0.186-5.fc37 fedora 512 k elfutils-debuginfod-client aarch64 0.186-5.fc37 fedora 38 k elfutils-default-yama-scope noarch 0.186-5.fc37 fedora 16 k elfutils-libelf aarch64 0.186-5.fc37 fedora 196 k elfutils-libs aarch64 0.186-5.fc37 fedora 254 k fedora-gpg-keys noarch 37-0.1 fedora 115 k fedora-release noarch 37-0.3 fedora 12 k fedora-release-identity-basic noarch 37-0.3 fedora 13 k fedora-repos noarch 37-0.1 fedora 11 k fedora-repos-rawhide noarch 37-0.1 fedora 10 k file aarch64 5.41-5.fc37 fedora 48 k file-libs aarch64 5.41-5.fc37 fedora 633 k filesystem aarch64 3.16-2.fc36 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-7.fc36 fedora 27 k fpc-srpm-macros noarch 1.3-5.fc36 fedora 7.6 k gdb-minimal aarch64 11.2-3.fc37 fedora 3.4 M gdbm-libs aarch64 1:1.22-2.fc36 fedora 58 k ghc-srpm-macros noarch 1.5.0-6.fc36 fedora 7.7 k glibc aarch64 2.35.9000-14.fc37 fedora 1.7 M glibc-common aarch64 2.35.9000-14.fc37 fedora 330 k glibc-gconv-extra aarch64 2.35.9000-14.fc37 fedora 1.7 M gmp aarch64 1:6.2.1-2.fc36 fedora 265 k gnat-srpm-macros noarch 4-15.fc36 fedora 8.2 k go-srpm-macros noarch 3.0.15-1.fc36 fedora 26 k kernel-srpm-macros noarch 1.0-14.fc36 fedora 9.1 k keyutils-libs aarch64 1.6.1-4.fc36 fedora 31 k krb5-libs aarch64 1.19.2-9.fc37 fedora 728 k libacl aarch64 2.3.1-3.fc36 fedora 24 k libarchive aarch64 3.6.1-1.fc37 fedora 391 k libattr aarch64 2.5.1-4.fc36 fedora 18 k libblkid aarch64 2.38-3.fc37 fedora 106 k libbrotli aarch64 1.0.9-7.fc36 fedora 317 k libcap aarch64 2.48-4.fc36 fedora 67 k libcap-ng aarch64 0.8.3-1.fc37 fedora 32 k libcom_err aarch64 1.46.5-2.fc36 fedora 25 k libcurl aarch64 7.82.0-2.fc37 fedora 294 k libdb aarch64 5.3.28-52.fc37 fedora 737 k libeconf aarch64 0.4.0-3.fc36 fedora 27 k libevent aarch64 2.1.12-6.fc36 fedora 254 k libfdisk aarch64 2.38-3.fc37 fedora 156 k libffi aarch64 3.4.2-8.fc36 fedora 36 k libgcc aarch64 12.0.1-0.16.fc37 fedora 87 k libgcrypt aarch64 1.10.1-2.fc37 fedora 449 k libgomp aarch64 12.0.1-0.16.fc37 fedora 285 k libgpg-error aarch64 1.45-1.fc37 fedora 220 k libidn2 aarch64 2.3.2-4.fc36 fedora 104 k libmount aarch64 2.38-3.fc37 fedora 133 k libnghttp2 aarch64 1.47.0-1.fc37 fedora 70 k libnsl2 aarch64 2.0.0-3.fc36 fedora 30 k libpkgconf aarch64 1.8.0-2.fc36 fedora 36 k libpsl aarch64 0.21.1-5.fc36 fedora 64 k libpwquality aarch64 1.4.4-7.fc36 fedora 105 k libselinux aarch64 3.3-4.fc36 fedora 84 k libsemanage aarch64 3.3-3.fc37 fedora 116 k libsepol aarch64 3.3-3.fc36 fedora 297 k libsigsegv aarch64 2.14-2.fc36 fedora 27 k libsmartcols aarch64 2.38-3.fc37 fedora 63 k libssh aarch64 0.9.6-4.fc36 fedora 202 k libssh-config noarch 0.9.6-4.fc36 fedora 7.6 k libstdc++ aarch64 12.0.1-0.16.fc37 fedora 735 k libtasn1 aarch64 4.18.0-2.fc36 fedora 74 k libtirpc aarch64 1.3.2-1.rc1.fc36.1 fedora 94 k libunistring aarch64 1.0-1.fc36 fedora 544 k libutempter aarch64 1.2.1-6.fc36 fedora 26 k libuuid aarch64 2.38-3.fc37 fedora 28 k libverto aarch64 0.3.2-3.fc36 fedora 21 k libxcrypt aarch64 4.4.28-1.fc37 fedora 122 k libxml2 aarch64 2.9.13-1.fc37 fedora 734 k libzstd aarch64 1.5.2-1.fc36 fedora 267 k lua-libs aarch64 5.4.4-2.fc37 fedora 212 k lua-srpm-macros noarch 1-6.fc36 fedora 8.5 k lz4-libs aarch64 1.9.3-4.fc36 fedora 70 k mpfr aarch64 4.1.0-9.fc36 fedora 240 k ncurses-base noarch 6.3-1.20220416.fc37 fedora 61 k ncurses-libs aarch64 6.3-1.20220416.fc37 fedora 318 k nim-srpm-macros noarch 3-6.fc36 fedora 8.3 k ocaml-srpm-macros noarch 6-6.fc36 fedora 7.7 k openblas-srpm-macros noarch 2-11.fc36 fedora 7.4 k openldap aarch64 2.6.1-2.fc36 fedora 249 k openssl-libs aarch64 1:3.0.2-3.fc37 fedora 2.0 M p11-kit aarch64 0.24.1-2.fc36 fedora 347 k p11-kit-trust aarch64 0.24.1-2.fc36 fedora 138 k package-notes-srpm-macros noarch 0.4-14.fc36 fedora 11 k pam aarch64 1.5.2-12.fc37 fedora 527 k pam-libs aarch64 1.5.2-12.fc37 fedora 59 k pcre aarch64 8.45-1.fc36.1 fedora 184 k pcre2 aarch64 10.39-1.fc36.1 fedora 212 k pcre2-syntax noarch 10.39-1.fc36.1 fedora 143 k perl-srpm-macros noarch 1-43.fc36 fedora 8.4 k pkgconf aarch64 1.8.0-2.fc36 fedora 41 k pkgconf-m4 noarch 1.8.0-2.fc36 fedora 14 k pkgconf-pkg-config aarch64 1.8.0-2.fc36 fedora 10 k popt aarch64 1.18-7.fc36 fedora 59 k publicsuffix-list-dafsa noarch 20210518-4.fc36 fedora 58 k python-srpm-macros noarch 3.10-17.fc36 fedora 26 k qt5-srpm-macros noarch 5.15.3-1.fc37 fedora 8.1 k readline aarch64 8.1-6.fc36 fedora 209 k rpm aarch64 4.17.0-10.fc37 fedora 539 k rpm-build-libs aarch64 4.17.0-10.fc37 fedora 91 k rpm-libs aarch64 4.17.0-10.fc37 fedora 307 k rpmautospec-rpm-macros noarch 0.2.5-1.fc35 fedora 9.9 k rust-srpm-macros noarch 21-1.fc37 fedora 9.2 k setup noarch 2.13.9.1-3.fc36 fedora 143 k sqlite-libs aarch64 3.38.2-1.fc37 fedora 653 k systemd-libs aarch64 251~rc1-3.fc37 fedora 586 k tzdata noarch 2022a-1.fc37 fedora 432 k util-linux-core aarch64 2.38-3.fc37 fedora 456 k xxhash-libs aarch64 0.8.1-2.fc36 fedora 34 k xz-libs aarch64 5.2.5-9.fc37 fedora 90 k zip aarch64 3.0-32.fc36 fedora 256 k zlib aarch64 1.2.11-31.fc36 fedora 90 k zstd aarch64 1.5.2-1.fc36 fedora 336 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 49 M Installed size: 202 M Downloading Packages: (1/152): alternatives-1.19-2.fc36.aarch64.rpm 87 kB/s | 35 kB 00:00 (2/152): audit-libs-3.0.8-1.fc37.aarch64.rpm 287 kB/s | 116 kB 00:00 (3/152): basesystem-11-13.fc36.noarch.rpm 2.6 MB/s | 7.0 kB 00:00 (4/152): authselect-libs-1.3.0-10.fc37.aarch64. 18 MB/s | 223 kB 00:00 (5/152): bash-5.1.16-2.fc36.aarch64.rpm 104 MB/s | 1.6 MB 00:00 (6/152): authselect-1.3.0-10.fc37.aarch64.rpm 305 kB/s | 135 kB 00:00 (7/152): binutils-gold-2.38-8.fc37.aarch64.rpm 35 MB/s | 898 kB 00:00 (8/152): bzip2-1.0.8-11.fc36.aarch64.rpm 6.0 MB/s | 52 kB 00:00 (9/152): bzip2-libs-1.0.8-11.fc36.aarch64.rpm 12 MB/s | 43 kB 00:00 (10/152): coreutils-9.1-2.fc37.aarch64.rpm 85 MB/s | 1.0 MB 00:00 (11/152): ca-certificates-2021.2.52-3.fc36.noar 20 MB/s | 367 kB 00:00 (12/152): cpio-2.13-12.fc36.aarch64.rpm 21 MB/s | 267 kB 00:00 (13/152): coreutils-common-9.1-2.fc37.aarch64.r 79 MB/s | 2.0 MB 00:00 (14/152): cracklib-2.9.6-28.fc36.aarch64.rpm 9.6 MB/s | 82 kB 00:00 (15/152): crypto-policies-20220412-1.git97fe449 14 MB/s | 58 kB 00:00 (16/152): curl-7.82.0-2.fc37.aarch64.rpm 50 MB/s | 305 kB 00:00 (17/152): cyrus-sasl-lib-2.1.28-1.fc37.aarch64. 52 MB/s | 777 kB 00:00 (18/152): debugedit-5.0-3.fc36.aarch64.rpm 6.7 MB/s | 76 kB 00:00 (19/152): dwz-0.14-2.fc35.aarch64.rpm 11 MB/s | 125 kB 00:00 (20/152): diffutils-3.8-2.fc36.aarch64.rpm 17 MB/s | 368 kB 00:00 (21/152): ed-1.14.2-12.fc36.aarch64.rpm 8.7 MB/s | 73 kB 00:00 (22/152): efi-srpm-macros-5-5.fc36.noarch.rpm 2.0 MB/s | 22 kB 00:00 (23/152): elfutils-0.186-5.fc37.aarch64.rpm 31 MB/s | 512 kB 00:00 (24/152): elfutils-debuginfod-client-0.186-5.fc 4.2 MB/s | 38 kB 00:00 (25/152): elfutils-default-yama-scope-0.186-5.f 3.6 MB/s | 16 kB 00:00 (26/152): elfutils-libelf-0.186-5.fc37.aarch64. 39 MB/s | 196 kB 00:00 (27/152): elfutils-libs-0.186-5.fc37.aarch64.rp 39 MB/s | 254 kB 00:00 (28/152): fedora-gpg-keys-37-0.1.noarch.rpm 35 MB/s | 115 kB 00:00 (29/152): fedora-release-37-0.3.noarch.rpm 2.1 MB/s | 12 kB 00:00 (30/152): fedora-release-common-37-0.3.noarch.r 4.2 MB/s | 22 kB 00:00 (31/152): fedora-release-identity-basic-37-0.3. 3.8 MB/s | 13 kB 00:00 (32/152): fedora-repos-37-0.1.noarch.rpm 3.0 MB/s | 11 kB 00:00 (33/152): fedora-repos-rawhide-37-0.1.noarch.rp 2.4 MB/s | 10 kB 00:00 (34/152): file-5.41-5.fc37.aarch64.rpm 8.8 MB/s | 48 kB 00:00 (35/152): binutils-2.38-8.fc37.aarch64.rpm 28 MB/s | 5.8 MB 00:00 (36/152): filesystem-3.16-2.fc36.aarch64.rpm 29 MB/s | 1.1 MB 00:00 (37/152): file-libs-5.41-5.fc37.aarch64.rpm 13 MB/s | 633 kB 00:00 (38/152): findutils-4.9.0-1.fc36.aarch64.rpm 43 MB/s | 484 kB 00:00 (39/152): fonts-srpm-macros-2.0.5-7.fc36.noarch 5.5 MB/s | 27 kB 00:00 (40/152): fpc-srpm-macros-1.3-5.fc36.noarch.rpm 767 kB/s | 7.6 kB 00:00 (41/152): gawk-5.1.1-3.fc37.aarch64.rpm 50 MB/s | 1.0 MB 00:00 (42/152): gdbm-libs-1.22-2.fc36.aarch64.rpm 5.8 MB/s | 58 kB 00:00 (43/152): ghc-srpm-macros-1.5.0-6.fc36.noarch.r 678 kB/s | 7.7 kB 00:00 (44/152): glibc-common-2.35.9000-14.fc37.aarch6 29 MB/s | 330 kB 00:00 (45/152): glibc-gconv-extra-2.35.9000-14.fc37.a 36 MB/s | 1.7 MB 00:00 (46/152): glibc-minimal-langpack-2.35.9000-14.f 11 MB/s | 60 kB 00:00 (47/152): gmp-6.2.1-2.fc36.aarch64.rpm 42 MB/s | 265 kB 00:00 (48/152): gnat-srpm-macros-4-15.fc36.noarch.rpm 742 kB/s | 8.2 kB 00:00 (49/152): gdb-minimal-11.2-3.fc37.aarch64.rpm 21 MB/s | 3.4 MB 00:00 (50/152): go-srpm-macros-3.0.15-1.fc36.noarch.r 582 kB/s | 26 kB 00:00 (51/152): grep-3.7-2.fc36.aarch64.rpm 34 MB/s | 260 kB 00:00 (52/152): gzip-1.12-1.fc37.aarch64.rpm 14 MB/s | 157 kB 00:00 (53/152): info-6.8-3.fc36.aarch64.rpm 14 MB/s | 220 kB 00:00 (54/152): keyutils-libs-1.6.1-4.fc36.aarch64.rp 12 MB/s | 31 kB 00:00 (55/152): krb5-libs-1.19.2-9.fc37.aarch64.rpm 60 MB/s | 728 kB 00:00 (56/152): libacl-2.3.1-3.fc36.aarch64.rpm 4.3 MB/s | 24 kB 00:00 (57/152): glibc-2.35.9000-14.fc37.aarch64.rpm 9.1 MB/s | 1.7 MB 00:00 (58/152): libarchive-3.6.1-1.fc37.aarch64.rpm 50 MB/s | 391 kB 00:00 (59/152): libattr-2.5.1-4.fc36.aarch64.rpm 6.7 MB/s | 18 kB 00:00 (60/152): libblkid-2.38-3.fc37.aarch64.rpm 37 MB/s | 106 kB 00:00 (61/152): libbrotli-1.0.9-7.fc36.aarch64.rpm 28 MB/s | 317 kB 00:00 (62/152): libcap-ng-0.8.3-1.fc37.aarch64.rpm 5.7 MB/s | 32 kB 00:00 (63/152): libcom_err-1.46.5-2.fc36.aarch64.rpm 5.5 MB/s | 25 kB 00:00 (64/152): libcap-2.48-4.fc36.aarch64.rpm 2.9 MB/s | 67 kB 00:00 (65/152): kernel-srpm-macros-1.0-14.fc36.noarch 120 kB/s | 9.1 kB 00:00 (66/152): libeconf-0.4.0-3.fc36.aarch64.rpm 4.6 MB/s | 27 kB 00:00 (67/152): libcurl-7.82.0-2.fc37.aarch64.rpm 18 MB/s | 294 kB 00:00 (68/152): libevent-2.1.12-6.fc36.aarch64.rpm 32 MB/s | 254 kB 00:00 (69/152): libdb-5.3.28-52.fc37.aarch64.rpm 29 MB/s | 737 kB 00:00 (70/152): libffi-3.4.2-8.fc36.aarch64.rpm 2.2 MB/s | 36 kB 00:00 (71/152): libgcc-12.0.1-0.16.fc37.aarch64.rpm 4.7 MB/s | 87 kB 00:00 (72/152): libgomp-12.0.1-0.16.fc37.aarch64.rpm 47 MB/s | 285 kB 00:00 (73/152): libgcrypt-1.10.1-2.fc37.aarch64.rpm 35 MB/s | 449 kB 00:00 (74/152): libidn2-2.3.2-4.fc36.aarch64.rpm 26 MB/s | 104 kB 00:00 (75/152): libgpg-error-1.45-1.fc37.aarch64.rpm 28 MB/s | 220 kB 00:00 (76/152): libnghttp2-1.47.0-1.fc37.aarch64.rpm 14 MB/s | 70 kB 00:00 (77/152): libmount-2.38-3.fc37.aarch64.rpm 15 MB/s | 133 kB 00:00 (78/152): libnsl2-2.0.0-3.fc36.aarch64.rpm 6.0 MB/s | 30 kB 00:00 (79/152): libfdisk-2.38-3.fc37.aarch64.rpm 2.4 MB/s | 156 kB 00:00 (80/152): libpkgconf-1.8.0-2.fc36.aarch64.rpm 1.1 MB/s | 36 kB 00:00 (81/152): libpwquality-1.4.4-7.fc36.aarch64.rpm 4.4 MB/s | 105 kB 00:00 (82/152): libselinux-3.3-4.fc36.aarch64.rpm 6.8 MB/s | 84 kB 00:00 (83/152): libsemanage-3.3-3.fc37.aarch64.rpm 9.3 MB/s | 116 kB 00:00 (84/152): libsigsegv-2.14-2.fc36.aarch64.rpm 5.9 MB/s | 27 kB 00:00 (85/152): libsepol-3.3-3.fc36.aarch64.rpm 28 MB/s | 297 kB 00:00 (86/152): libsmartcols-2.38-3.fc37.aarch64.rpm 12 MB/s | 63 kB 00:00 (87/152): libpsl-0.21.1-5.fc36.aarch64.rpm 1.1 MB/s | 64 kB 00:00 (88/152): libssh-config-0.9.6-4.fc36.noarch.rpm 1.3 MB/s | 7.6 kB 00:00 (89/152): libssh-0.9.6-4.fc36.aarch64.rpm 12 MB/s | 202 kB 00:00 (90/152): libstdc++-12.0.1-0.16.fc37.aarch64.rp 49 MB/s | 735 kB 00:00 (91/152): libtirpc-1.3.2-1.rc1.fc36.1.aarch64.r 22 MB/s | 94 kB 00:00 (92/152): libtasn1-4.18.0-2.fc36.aarch64.rpm 4.9 MB/s | 74 kB 00:00 (93/152): libunistring-1.0-1.fc36.aarch64.rpm 30 MB/s | 544 kB 00:00 (94/152): libutempter-1.2.1-6.fc36.aarch64.rpm 1.4 MB/s | 26 kB 00:00 (95/152): libuuid-2.38-3.fc37.aarch64.rpm 1.5 MB/s | 28 kB 00:00 (96/152): libverto-0.3.2-3.fc36.aarch64.rpm 2.9 MB/s | 21 kB 00:00 (97/152): libxcrypt-4.4.28-1.fc37.aarch64.rpm 17 MB/s | 122 kB 00:00 (98/152): lua-libs-5.4.4-2.fc37.aarch64.rpm 45 MB/s | 212 kB 00:00 (99/152): libzstd-1.5.2-1.fc36.aarch64.rpm 28 MB/s | 267 kB 00:00 (100/152): lua-srpm-macros-1-6.fc36.noarch.rpm 1.2 MB/s | 8.5 kB 00:00 (101/152): lz4-libs-1.9.3-4.fc36.aarch64.rpm 11 MB/s | 70 kB 00:00 (102/152): ncurses-base-6.3-1.20220416.fc37.noa 17 MB/s | 61 kB 00:00 (103/152): mpfr-4.1.0-9.fc36.aarch64.rpm 30 MB/s | 240 kB 00:00 (104/152): ncurses-libs-6.3-1.20220416.fc37.aar 52 MB/s | 318 kB 00:00 (105/152): nim-srpm-macros-3-6.fc36.noarch.rpm 1.2 MB/s | 8.3 kB 00:00 (106/152): openblas-srpm-macros-2-11.fc36.noarc 950 kB/s | 7.4 kB 00:00 (107/152): ocaml-srpm-macros-6-6.fc36.noarch.rp 627 kB/s | 7.7 kB 00:00 (108/152): openldap-2.6.1-2.fc36.aarch64.rpm 21 MB/s | 249 kB 00:00 (109/152): libxml2-2.9.13-1.fc37.aarch64.rpm 10 MB/s | 734 kB 00:00 (110/152): openssl-libs-3.0.2-3.fc37.aarch64.rp 75 MB/s | 2.0 MB 00:00 (111/152): p11-kit-0.24.1-2.fc36.aarch64.rpm 20 MB/s | 347 kB 00:00 (112/152): p11-kit-trust-0.24.1-2.fc36.aarch64. 14 MB/s | 138 kB 00:00 (113/152): package-notes-srpm-macros-0.4-14.fc3 1.3 MB/s | 11 kB 00:00 (114/152): patch-2.7.6-16.fc36.aarch64.rpm 18 MB/s | 121 kB 00:00 (115/152): pam-1.5.2-12.fc37.aarch64.rpm 23 MB/s | 527 kB 00:00 (116/152): pcre-8.45-1.fc36.1.aarch64.rpm 19 MB/s | 184 kB 00:00 (117/152): pcre2-syntax-10.39-1.fc36.1.noarch.r 32 MB/s | 143 kB 00:00 (118/152): pcre2-10.39-1.fc36.1.aarch64.rpm 28 MB/s | 212 kB 00:00 (119/152): pam-libs-1.5.2-12.fc37.aarch64.rpm 1.6 MB/s | 59 kB 00:00 (120/152): perl-srpm-macros-1-43.fc36.noarch.rp 804 kB/s | 8.4 kB 00:00 (121/152): pkgconf-pkg-config-1.8.0-2.fc36.aarc 3.2 MB/s | 10 kB 00:00 (122/152): pkgconf-1.8.0-2.fc36.aarch64.rpm 2.8 MB/s | 41 kB 00:00 (123/152): pkgconf-m4-1.8.0-2.fc36.noarch.rpm 1.7 MB/s | 14 kB 00:00 (124/152): publicsuffix-list-dafsa-20210518-4.f 12 MB/s | 58 kB 00:00 (125/152): python-srpm-macros-3.10-17.fc36.noar 5.2 MB/s | 26 kB 00:00 (126/152): popt-1.18-7.fc36.aarch64.rpm 6.2 MB/s | 59 kB 00:00 (127/152): qt5-srpm-macros-5.15.3-1.fc37.noarch 2.0 MB/s | 8.1 kB 00:00 (128/152): readline-8.1-6.fc36.aarch64.rpm 24 MB/s | 209 kB 00:00 (129/152): redhat-rpm-config-214-1.fc37.noarch. 8.4 MB/s | 68 kB 00:00 (130/152): rpm-4.17.0-10.fc37.aarch64.rpm 56 MB/s | 539 kB 00:00 (131/152): rpm-build-libs-4.17.0-10.fc37.aarch6 19 MB/s | 91 kB 00:00 (132/152): rpm-build-4.17.0-10.fc37.aarch64.rpm 9.3 MB/s | 61 kB 00:00 (133/152): rpm-libs-4.17.0-10.fc37.aarch64.rpm 37 MB/s | 307 kB 00:00 (134/152): rpmautospec-rpm-macros-0.2.5-1.fc35. 1.7 MB/s | 9.9 kB 00:00 (135/152): setup-2.13.9.1-3.fc36.noarch.rpm 31 MB/s | 143 kB 00:00 (136/152): sed-4.8-10.fc36.aarch64.rpm 38 MB/s | 295 kB 00:00 (137/152): sqlite-libs-3.38.2-1.fc37.aarch64.rp 89 MB/s | 653 kB 00:00 (138/152): rust-srpm-macros-21-1.fc37.noarch.rp 339 kB/s | 9.2 kB 00:00 (139/152): systemd-libs-251~rc1-3.fc37.aarch64. 61 MB/s | 586 kB 00:00 (140/152): shadow-utils-4.11.1-2.fc37.aarch64.r 44 MB/s | 1.1 MB 00:00 (141/152): tzdata-2022a-1.fc37.noarch.rpm 44 MB/s | 432 kB 00:00 (142/152): unzip-6.0-57.fc36.aarch64.rpm 17 MB/s | 182 kB 00:00 (143/152): tar-1.34-3.fc36.aarch64.rpm 22 MB/s | 868 kB 00:00 (144/152): util-linux-core-2.38-3.fc37.aarch64. 16 MB/s | 456 kB 00:00 (145/152): xxhash-libs-0.8.1-2.fc36.aarch64.rpm 5.7 MB/s | 34 kB 00:00 (146/152): xz-5.2.5-9.fc37.aarch64.rpm 11 MB/s | 215 kB 00:00 (147/152): xz-libs-5.2.5-9.fc37.aarch64.rpm 10 MB/s | 90 kB 00:00 (148/152): which-2.21-33.fc37.aarch64.rpm 781 kB/s | 41 kB 00:00 (149/152): zlib-1.2.11-31.fc36.aarch64.rpm 15 MB/s | 90 kB 00:00 (150/152): zip-3.0-32.fc36.aarch64.rpm 14 MB/s | 256 kB 00:00 (151/152): zstd-1.5.2-1.fc36.aarch64.rpm 10 MB/s | 336 kB 00:00 (152/152): util-linux-2.38-3.fc37.aarch64.rpm 17 MB/s | 2.3 MB 00:00 -------------------------------------------------------------------------------- Total 31 MB/s | 49 MB 00:01 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary (0x5323552A) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x38AB71F4: Userid : "Fedora (36) " Fingerprint: 53DE D2CB 922D 8B8D 9E63 FD18 999F 7CBF 38AB 71F4 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-36-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-2.fc36.aarch64 1/1 Preparing : 1/1 Installing : libgcc-12.0.1-0.16.fc37.aarch64 1/152 Running scriptlet: libgcc-12.0.1-0.16.fc37.aarch64 1/152 Installing : crypto-policies-20220412-1.git97fe449.fc37.noarc 2/152 Running scriptlet: crypto-policies-20220412-1.git97fe449.fc37.noarc 2/152 Installing : fedora-release-identity-basic-37-0.3.noarch 3/152 Installing : tzdata-2022a-1.fc37.noarch 4/152 Installing : rust-srpm-macros-21-1.fc37.noarch 5/152 Installing : qt5-srpm-macros-5.15.3-1.fc37.noarch 6/152 Installing : publicsuffix-list-dafsa-20210518-4.fc36.noarch 7/152 Installing : pkgconf-m4-1.8.0-2.fc36.noarch 8/152 Installing : perl-srpm-macros-1-43.fc36.noarch 9/152 Installing : pcre2-syntax-10.39-1.fc36.1.noarch 10/152 Installing : openblas-srpm-macros-2-11.fc36.noarch 11/152 Installing : ocaml-srpm-macros-6-6.fc36.noarch 12/152 Installing : nim-srpm-macros-3-6.fc36.noarch 13/152 Installing : ncurses-base-6.3-1.20220416.fc37.noarch 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openblas-srpm-macros-2-11.fc36.noarch 108/152 Verifying : openldap-2.6.1-2.fc36.aarch64 109/152 Verifying : openssl-libs-1:3.0.2-3.fc37.aarch64 110/152 Verifying : p11-kit-0.24.1-2.fc36.aarch64 111/152 Verifying : p11-kit-trust-0.24.1-2.fc36.aarch64 112/152 Verifying : package-notes-srpm-macros-0.4-14.fc36.noarch 113/152 Verifying : pam-1.5.2-12.fc37.aarch64 114/152 Verifying : pam-libs-1.5.2-12.fc37.aarch64 115/152 Verifying : patch-2.7.6-16.fc36.aarch64 116/152 Verifying : pcre-8.45-1.fc36.1.aarch64 117/152 Verifying : pcre2-10.39-1.fc36.1.aarch64 118/152 Verifying : pcre2-syntax-10.39-1.fc36.1.noarch 119/152 Verifying : perl-srpm-macros-1-43.fc36.noarch 120/152 Verifying : pkgconf-1.8.0-2.fc36.aarch64 121/152 Verifying : pkgconf-m4-1.8.0-2.fc36.noarch 122/152 Verifying : pkgconf-pkg-config-1.8.0-2.fc36.aarch64 123/152 Verifying : popt-1.18-7.fc36.aarch64 124/152 Verifying : publicsuffix-list-dafsa-20210518-4.fc36.noarch 125/152 Verifying : python-srpm-macros-3.10-17.fc36.noarch 126/152 Verifying : qt5-srpm-macros-5.15.3-1.fc37.noarch 127/152 Verifying : readline-8.1-6.fc36.aarch64 128/152 Verifying : redhat-rpm-config-214-1.fc37.noarch 129/152 Verifying : rpm-4.17.0-10.fc37.aarch64 130/152 Verifying : rpm-build-4.17.0-10.fc37.aarch64 131/152 Verifying : rpm-build-libs-4.17.0-10.fc37.aarch64 132/152 Verifying : rpm-libs-4.17.0-10.fc37.aarch64 133/152 Verifying : rpmautospec-rpm-macros-0.2.5-1.fc35.noarch 134/152 Verifying : rust-srpm-macros-21-1.fc37.noarch 135/152 Verifying : sed-4.8-10.fc36.aarch64 136/152 Verifying : setup-2.13.9.1-3.fc36.noarch 137/152 Verifying : shadow-utils-2:4.11.1-2.fc37.aarch64 138/152 Verifying : sqlite-libs-3.38.2-1.fc37.aarch64 139/152 Verifying : systemd-libs-251~rc1-3.fc37.aarch64 140/152 Verifying : tar-2:1.34-3.fc36.aarch64 141/152 Verifying : tzdata-2022a-1.fc37.noarch 142/152 Verifying : unzip-6.0-57.fc36.aarch64 143/152 Verifying : util-linux-2.38-3.fc37.aarch64 144/152 Verifying : util-linux-core-2.38-3.fc37.aarch64 145/152 Verifying : which-2.21-33.fc37.aarch64 146/152 Verifying : xxhash-libs-0.8.1-2.fc36.aarch64 147/152 Verifying : xz-5.2.5-9.fc37.aarch64 148/152 Verifying : xz-libs-5.2.5-9.fc37.aarch64 149/152 Verifying : zip-3.0-32.fc36.aarch64 150/152 Verifying : zlib-1.2.11-31.fc36.aarch64 151/152 Verifying : zstd-1.5.2-1.fc36.aarch64 152/152 Installed: alternatives-1.19-2.fc36.aarch64 audit-libs-3.0.8-1.fc37.aarch64 authselect-1.3.0-10.fc37.aarch64 authselect-libs-1.3.0-10.fc37.aarch64 basesystem-11-13.fc36.noarch bash-5.1.16-2.fc36.aarch64 binutils-2.38-8.fc37.aarch64 binutils-gold-2.38-8.fc37.aarch64 bzip2-1.0.8-11.fc36.aarch64 bzip2-libs-1.0.8-11.fc36.aarch64 ca-certificates-2021.2.52-3.fc36.noarch coreutils-9.1-2.fc37.aarch64 coreutils-common-9.1-2.fc37.aarch64 cpio-2.13-12.fc36.aarch64 cracklib-2.9.6-28.fc36.aarch64 crypto-policies-20220412-1.git97fe449.fc37.noarch curl-7.82.0-2.fc37.aarch64 cyrus-sasl-lib-2.1.28-1.fc37.aarch64 debugedit-5.0-3.fc36.aarch64 diffutils-3.8-2.fc36.aarch64 dwz-0.14-2.fc35.aarch64 ed-1.14.2-12.fc36.aarch64 efi-srpm-macros-5-5.fc36.noarch elfutils-0.186-5.fc37.aarch64 elfutils-debuginfod-client-0.186-5.fc37.aarch64 elfutils-default-yama-scope-0.186-5.fc37.noarch elfutils-libelf-0.186-5.fc37.aarch64 elfutils-libs-0.186-5.fc37.aarch64 fedora-gpg-keys-37-0.1.noarch fedora-release-37-0.3.noarch fedora-release-common-37-0.3.noarch fedora-release-identity-basic-37-0.3.noarch fedora-repos-37-0.1.noarch fedora-repos-rawhide-37-0.1.noarch file-5.41-5.fc37.aarch64 file-libs-5.41-5.fc37.aarch64 filesystem-3.16-2.fc36.aarch64 findutils-1:4.9.0-1.fc36.aarch64 fonts-srpm-macros-1:2.0.5-7.fc36.noarch fpc-srpm-macros-1.3-5.fc36.noarch gawk-5.1.1-3.fc37.aarch64 gdb-minimal-11.2-3.fc37.aarch64 gdbm-libs-1:1.22-2.fc36.aarch64 ghc-srpm-macros-1.5.0-6.fc36.noarch glibc-2.35.9000-14.fc37.aarch64 glibc-common-2.35.9000-14.fc37.aarch64 glibc-gconv-extra-2.35.9000-14.fc37.aarch64 glibc-minimal-langpack-2.35.9000-14.fc37.aarch64 gmp-1:6.2.1-2.fc36.aarch64 gnat-srpm-macros-4-15.fc36.noarch go-srpm-macros-3.0.15-1.fc36.noarch grep-3.7-2.fc36.aarch64 gzip-1.12-1.fc37.aarch64 info-6.8-3.fc36.aarch64 kernel-srpm-macros-1.0-14.fc36.noarch keyutils-libs-1.6.1-4.fc36.aarch64 krb5-libs-1.19.2-9.fc37.aarch64 libacl-2.3.1-3.fc36.aarch64 libarchive-3.6.1-1.fc37.aarch64 libattr-2.5.1-4.fc36.aarch64 libblkid-2.38-3.fc37.aarch64 libbrotli-1.0.9-7.fc36.aarch64 libcap-2.48-4.fc36.aarch64 libcap-ng-0.8.3-1.fc37.aarch64 libcom_err-1.46.5-2.fc36.aarch64 libcurl-7.82.0-2.fc37.aarch64 libdb-5.3.28-52.fc37.aarch64 libeconf-0.4.0-3.fc36.aarch64 libevent-2.1.12-6.fc36.aarch64 libfdisk-2.38-3.fc37.aarch64 libffi-3.4.2-8.fc36.aarch64 libgcc-12.0.1-0.16.fc37.aarch64 libgcrypt-1.10.1-2.fc37.aarch64 libgomp-12.0.1-0.16.fc37.aarch64 libgpg-error-1.45-1.fc37.aarch64 libidn2-2.3.2-4.fc36.aarch64 libmount-2.38-3.fc37.aarch64 libnghttp2-1.47.0-1.fc37.aarch64 libnsl2-2.0.0-3.fc36.aarch64 libpkgconf-1.8.0-2.fc36.aarch64 libpsl-0.21.1-5.fc36.aarch64 libpwquality-1.4.4-7.fc36.aarch64 libselinux-3.3-4.fc36.aarch64 libsemanage-3.3-3.fc37.aarch64 libsepol-3.3-3.fc36.aarch64 libsigsegv-2.14-2.fc36.aarch64 libsmartcols-2.38-3.fc37.aarch64 libssh-0.9.6-4.fc36.aarch64 libssh-config-0.9.6-4.fc36.noarch libstdc++-12.0.1-0.16.fc37.aarch64 libtasn1-4.18.0-2.fc36.aarch64 libtirpc-1.3.2-1.rc1.fc36.1.aarch64 libunistring-1.0-1.fc36.aarch64 libutempter-1.2.1-6.fc36.aarch64 libuuid-2.38-3.fc37.aarch64 libverto-0.3.2-3.fc36.aarch64 libxcrypt-4.4.28-1.fc37.aarch64 libxml2-2.9.13-1.fc37.aarch64 libzstd-1.5.2-1.fc36.aarch64 lua-libs-5.4.4-2.fc37.aarch64 lua-srpm-macros-1-6.fc36.noarch lz4-libs-1.9.3-4.fc36.aarch64 mpfr-4.1.0-9.fc36.aarch64 ncurses-base-6.3-1.20220416.fc37.noarch ncurses-libs-6.3-1.20220416.fc37.aarch64 nim-srpm-macros-3-6.fc36.noarch ocaml-srpm-macros-6-6.fc36.noarch openblas-srpm-macros-2-11.fc36.noarch openldap-2.6.1-2.fc36.aarch64 openssl-libs-1:3.0.2-3.fc37.aarch64 p11-kit-0.24.1-2.fc36.aarch64 p11-kit-trust-0.24.1-2.fc36.aarch64 package-notes-srpm-macros-0.4-14.fc36.noarch pam-1.5.2-12.fc37.aarch64 pam-libs-1.5.2-12.fc37.aarch64 patch-2.7.6-16.fc36.aarch64 pcre-8.45-1.fc36.1.aarch64 pcre2-10.39-1.fc36.1.aarch64 pcre2-syntax-10.39-1.fc36.1.noarch perl-srpm-macros-1-43.fc36.noarch pkgconf-1.8.0-2.fc36.aarch64 pkgconf-m4-1.8.0-2.fc36.noarch pkgconf-pkg-config-1.8.0-2.fc36.aarch64 popt-1.18-7.fc36.aarch64 publicsuffix-list-dafsa-20210518-4.fc36.noarch python-srpm-macros-3.10-17.fc36.noarch qt5-srpm-macros-5.15.3-1.fc37.noarch readline-8.1-6.fc36.aarch64 redhat-rpm-config-214-1.fc37.noarch rpm-4.17.0-10.fc37.aarch64 rpm-build-4.17.0-10.fc37.aarch64 rpm-build-libs-4.17.0-10.fc37.aarch64 rpm-libs-4.17.0-10.fc37.aarch64 rpmautospec-rpm-macros-0.2.5-1.fc35.noarch rust-srpm-macros-21-1.fc37.noarch sed-4.8-10.fc36.aarch64 setup-2.13.9.1-3.fc36.noarch shadow-utils-2:4.11.1-2.fc37.aarch64 sqlite-libs-3.38.2-1.fc37.aarch64 systemd-libs-251~rc1-3.fc37.aarch64 tar-2:1.34-3.fc36.aarch64 tzdata-2022a-1.fc37.noarch unzip-6.0-57.fc36.aarch64 util-linux-2.38-3.fc37.aarch64 util-linux-core-2.38-3.fc37.aarch64 which-2.21-33.fc37.aarch64 xxhash-libs-0.8.1-2.fc36.aarch64 xz-5.2.5-9.fc37.aarch64 xz-libs-5.2.5-9.fc37.aarch64 zip-3.0-32.fc36.aarch64 zlib-1.2.11-31.fc36.aarch64 zstd-1.5.2-1.fc36.aarch64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: ncurses-libs-6.3-1.20220416.fc37.aarch64 pcre2-syntax-10.39-1.fc36.1.noarch p11-kit-0.24.1-2.fc36.aarch64 readline-8.1-6.fc36.aarch64 coreutils-common-9.1-2.fc37.aarch64 findutils-4.9.0-1.fc36.aarch64 krb5-libs-1.19.2-9.fc37.aarch64 libgomp-12.0.1-0.16.fc37.aarch64 gzip-1.12-1.fc37.aarch64 efi-srpm-macros-5-5.fc36.noarch libzstd-1.5.2-1.fc36.aarch64 util-linux-core-2.38-3.fc37.aarch64 ocaml-srpm-macros-6-6.fc36.noarch libpwquality-1.4.4-7.fc36.aarch64 gmp-6.2.1-2.fc36.aarch64 fedora-gpg-keys-37-0.1.noarch gawk-5.1.1-3.fc37.aarch64 libcom_err-1.46.5-2.fc36.aarch64 glibc-gconv-extra-2.35.9000-14.fc37.aarch64 pkgconf-pkg-config-1.8.0-2.fc36.aarch64 rpm-libs-4.17.0-10.fc37.aarch64 libunistring-1.0-1.fc36.aarch64 libuuid-2.38-3.fc37.aarch64 perl-srpm-macros-1-43.fc36.noarch fedora-release-common-37-0.3.noarch xxhash-libs-0.8.1-2.fc36.aarch64 libsemanage-3.3-3.fc37.aarch64 elfutils-libelf-0.186-5.fc37.aarch64 libidn2-2.3.2-4.fc36.aarch64 publicsuffix-list-dafsa-20210518-4.fc36.noarch popt-1.18-7.fc36.aarch64 zip-3.0-32.fc36.aarch64 libtasn1-4.18.0-2.fc36.aarch64 libbrotli-1.0.9-7.fc36.aarch64 cpio-2.13-12.fc36.aarch64 rpmautospec-rpm-macros-0.2.5-1.fc35.noarch fpc-srpm-macros-1.3-5.fc36.noarch ca-certificates-2021.2.52-3.fc36.noarch zstd-1.5.2-1.fc36.aarch64 util-linux-2.38-3.fc37.aarch64 filesystem-3.16-2.fc36.aarch64 libgcc-12.0.1-0.16.fc37.aarch64 go-srpm-macros-3.0.15-1.fc36.noarch ncurses-base-6.3-1.20220416.fc37.noarch elfutils-debuginfod-client-0.186-5.fc37.aarch64 libarchive-3.6.1-1.fc37.aarch64 bash-5.1.16-2.fc36.aarch64 libutempter-1.2.1-6.fc36.aarch64 cyrus-sasl-lib-2.1.28-1.fc37.aarch64 libeconf-0.4.0-3.fc36.aarch64 cracklib-2.9.6-28.fc36.aarch64 gdb-minimal-11.2-3.fc37.aarch64 ed-1.14.2-12.fc36.aarch64 libselinux-3.3-4.fc36.aarch64 libnsl2-2.0.0-3.fc36.aarch64 alternatives-1.19-2.fc36.aarch64 fedora-repos-37-0.1.noarch diffutils-3.8-2.fc36.aarch64 systemd-libs-251~rc1-3.fc37.aarch64 audit-libs-3.0.8-1.fc37.aarch64 rpm-build-4.17.0-10.fc37.aarch64 binutils-gold-2.38-8.fc37.aarch64 libacl-2.3.1-3.fc36.aarch64 libsepol-3.3-3.fc36.aarch64 libtirpc-1.3.2-1.rc1.fc36.1.aarch64 which-2.21-33.fc37.aarch64 libstdc++-12.0.1-0.16.fc37.aarch64 openssl-libs-3.0.2-3.fc37.aarch64 elfutils-0.186-5.fc37.aarch64 gpg-pubkey-5323552a-6112bcdc kernel-srpm-macros-1.0-14.fc36.noarch curl-7.82.0-2.fc37.aarch64 libcap-2.48-4.fc36.aarch64 patch-2.7.6-16.fc36.aarch64 file-libs-5.41-5.fc37.aarch64 libxcrypt-4.4.28-1.fc37.aarch64 coreutils-9.1-2.fc37.aarch64 elfutils-default-yama-scope-0.186-5.fc37.noarch libverto-0.3.2-3.fc36.aarch64 rpm-build-libs-4.17.0-10.fc37.aarch64 fedora-repos-rawhide-37-0.1.noarch glibc-common-2.35.9000-14.fc37.aarch64 xz-libs-5.2.5-9.fc37.aarch64 gpg-pubkey-38ab71f4-60242b08 bzip2-libs-1.0.8-11.fc36.aarch64 glibc-minimal-langpack-2.35.9000-14.fc37.aarch64 libfdisk-2.38-3.fc37.aarch64 libpsl-0.21.1-5.fc36.aarch64 sed-4.8-10.fc36.aarch64 dwz-0.14-2.fc35.aarch64 libgcrypt-1.10.1-2.fc37.aarch64 keyutils-libs-1.6.1-4.fc36.aarch64 libcap-ng-0.8.3-1.fc37.aarch64 setup-2.13.9.1-3.fc36.noarch mpfr-4.1.0-9.fc36.aarch64 grep-3.7-2.fc36.aarch64 lz4-libs-1.9.3-4.fc36.aarch64 libssh-0.9.6-4.fc36.aarch64 nim-srpm-macros-3-6.fc36.noarch libdb-5.3.28-52.fc37.aarch64 libsmartcols-2.38-3.fc37.aarch64 zlib-1.2.11-31.fc36.aarch64 libblkid-2.38-3.fc37.aarch64 bzip2-1.0.8-11.fc36.aarch64 libattr-2.5.1-4.fc36.aarch64 libxml2-2.9.13-1.fc37.aarch64 ghc-srpm-macros-1.5.0-6.fc36.noarch libgpg-error-1.45-1.fc37.aarch64 fonts-srpm-macros-2.0.5-7.fc36.noarch authselect-1.3.0-10.fc37.aarch64 lua-srpm-macros-1-6.fc36.noarch shadow-utils-4.11.1-2.fc37.aarch64 redhat-rpm-config-214-1.fc37.noarch pam-1.5.2-12.fc37.aarch64 libevent-2.1.12-6.fc36.aarch64 lua-libs-5.4.4-2.fc37.aarch64 libnghttp2-1.47.0-1.fc37.aarch64 pcre-8.45-1.fc36.1.aarch64 rpm-4.17.0-10.fc37.aarch64 elfutils-libs-0.186-5.fc37.aarch64 libsigsegv-2.14-2.fc36.aarch64 xz-5.2.5-9.fc37.aarch64 openblas-srpm-macros-2-11.fc36.noarch libpkgconf-1.8.0-2.fc36.aarch64 package-notes-srpm-macros-0.4-14.fc36.noarch pcre2-10.39-1.fc36.1.aarch64 pkgconf-1.8.0-2.fc36.aarch64 python-srpm-macros-3.10-17.fc36.noarch info-6.8-3.fc36.aarch64 qt5-srpm-macros-5.15.3-1.fc37.noarch libmount-2.38-3.fc37.aarch64 fedora-release-identity-basic-37-0.3.noarch crypto-policies-20220412-1.git97fe449.fc37.noarch p11-kit-trust-0.24.1-2.fc36.aarch64 rust-srpm-macros-21-1.fc37.noarch libcurl-7.82.0-2.fc37.aarch64 unzip-6.0-57.fc36.aarch64 authselect-libs-1.3.0-10.fc37.aarch64 glibc-2.35.9000-14.fc37.aarch64 pam-libs-1.5.2-12.fc37.aarch64 libssh-config-0.9.6-4.fc36.noarch basesystem-11-13.fc36.noarch sqlite-libs-3.38.2-1.fc37.aarch64 tar-1.34-3.fc36.aarch64 gnat-srpm-macros-4-15.fc36.noarch gdbm-libs-1.22-2.fc36.aarch64 binutils-2.38-8.fc37.aarch64 debugedit-5.0-3.fc36.aarch64 tzdata-2022a-1.fc37.noarch openldap-2.6.1-2.fc36.aarch64 fedora-release-37-0.3.noarch libffi-3.4.2-8.fc36.aarch64 pkgconf-m4-1.8.0-2.fc36.noarch file-5.41-5.fc37.aarch64 Start: buildsrpm Start: rpmbuild -bs sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1642550400 Wrote: /builddir/build/SRPMS/bionetgen-2.7.0-2.fc37.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-bdfv1htl/bionetgen/bionetgen.spec) Config(child) 2 minutes 21 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=96000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.7.0-2.fc37.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1650942749.139944 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.0 starting (python version = 3.10.2, NVR = mock-3.0-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.7.0-2.fc37.src.rpm) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1650942749.139944/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1650942749.139944/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.0 INFO: Mock Version: 3.0 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.0 INFO: Mock Version: 3.0 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 22 kB/s | 3.3 kB 00:00 Copr repository 1.6 MB/s | 713 kB 00:00 fedora 21 kB/s | 8.4 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bionetgen-2.7.0-2.fc37.src.rpm Start: build setup for bionetgen-2.7.0-2.fc37.src.rpm sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1642550400 Wrote: /builddir/build/SRPMS/bionetgen-2.7.0-2.fc37.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 21 kB/s | 3.3 kB 00:00 fedora 56 kB/s | 8.4 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: autoconf noarch 2.71-2.fc36 fedora 718 k automake noarch 1.16.5-4.fc37 fedora 673 k gcc aarch64 12.0.1-0.16.fc37 fedora 29 M gcc-c++ aarch64 12.0.1-0.16.fc37 fedora 11 M gcc-gfortran aarch64 12.0.1-0.16.fc37 fedora 11 M libtool aarch64 2.4.7-1.fc37 fedora 593 k make aarch64 1:4.3-8.fc37 fedora 531 k muParser-devel aarch64 2.3.2-4.fc36 fedora 26 k perl-Carp noarch 1.52-479.fc36 fedora 29 k perl-Class-Struct noarch 0.66-486.fc37 fedora 27 k perl-Data-Dumper aarch64 2.183-3.fc36 fedora 55 k perl-Exporter noarch 5.76-480.fc36 fedora 31 k perl-File-Basename noarch 2.85-486.fc37 fedora 22 k perl-FindBin noarch 1.52-486.fc37 fedora 19 k perl-Getopt-Long noarch 1:2.52-479.fc36 fedora 60 k perl-IO aarch64 1.46-486.fc37 fedora 92 k perl-IPC-Open3 noarch 1.21-486.fc37 fedora 28 k perl-Math-Complex noarch 1.59-486.fc37 fedora 52 k perl-POSIX aarch64 1.97-486.fc37 fedora 103 k perl-PathTools aarch64 3.80-479.fc36 fedora 85 k perl-Scalar-List-Utils aarch64 5:1.62-464.fc37 fedora 70 k perl-Symbol noarch 1.09-486.fc37 fedora 19 k perl-constant noarch 1.33-480.fc36 fedora 23 k perl-generators noarch 1.13-5.fc36 fedora 16 k perl-interpreter aarch64 4:5.34.1-486.fc37 fedora 76 k perl-lib aarch64 0.65-486.fc37 fedora 20 k perl-libs aarch64 4:5.34.1-486.fc37 fedora 2.0 M perl-vars noarch 1.05-486.fc37 fedora 18 k Installing dependencies: annobin-docs noarch 10.67-1.fc37 fedora 89 k annobin-plugin-gcc aarch64 10.67-1.fc37 fedora 880 k cpp aarch64 12.0.1-0.16.fc37 fedora 9.2 M emacs-filesystem noarch 1:27.2-11.fc37 fedora 9.1 k gc aarch64 8.0.6-2.fc36 fedora 102 k glibc-devel aarch64 2.35.9000-14.fc37 fedora 483 k groff-base aarch64 1.22.4-9.fc36 fedora 1.0 M guile22 aarch64 2.2.7-5.fc36 fedora 6.4 M kernel-headers aarch64 5.18.0-0.rc3.git0.1.fc37 fedora 1.3 M libasan aarch64 12.0.1-0.16.fc37 fedora 418 k libatomic aarch64 12.0.1-0.16.fc37 fedora 36 k libgfortran aarch64 12.0.1-0.16.fc37 fedora 429 k libmpc aarch64 1.2.1-4.fc36 fedora 62 k libstdc++-devel aarch64 12.0.1-0.16.fc37 fedora 2.3 M libtool-ltdl aarch64 2.4.7-1.fc37 fedora 37 k libubsan aarch64 12.0.1-0.16.fc37 fedora 185 k libxcrypt-devel aarch64 4.4.28-1.fc37 fedora 29 k m4 aarch64 1.4.19-3.fc36 fedora 293 k muParser aarch64 2.3.2-4.fc36 fedora 139 k ncurses aarch64 6.3-1.20220416.fc37 fedora 403 k perl-B aarch64 1.82-486.fc37 fedora 186 k perl-DynaLoader aarch64 1.50-486.fc37 fedora 31 k perl-Encode aarch64 4:3.17-485.fc37 fedora 1.7 M perl-Errno aarch64 1.33-486.fc37 fedora 20 k perl-Fcntl aarch64 1.14-486.fc37 fedora 25 k perl-Fedora-VSP noarch 0.001-25.fc36 fedora 23 k perl-File-Compare noarch 1.100.600-486.fc37 fedora 18 k perl-File-Copy noarch 2.35-486.fc37 fedora 25 k perl-File-Find noarch 1.39-486.fc37 fedora 30 k perl-File-Path noarch 2.18-479.fc36 fedora 35 k perl-File-Temp noarch 1:0.231.100-479.fc36 fedora 59 k perl-File-stat noarch 1.09-486.fc37 fedora 22 k perl-Getopt-Std noarch 1.13-486.fc37 fedora 21 k perl-HTTP-Tiny noarch 0.080-2.fc36 fedora 55 k perl-MIME-Base64 aarch64 3.16-479.fc36 fedora 30 k perl-Pod-Escapes noarch 1:1.07-479.fc36 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-480.fc36 fedora 83 k perl-Pod-Simple noarch 1:3.43-3.fc36 fedora 215 k perl-Pod-Usage noarch 4:2.01-479.fc36 fedora 40 k perl-SelectSaver noarch 1.02-486.fc37 fedora 17 k perl-Socket aarch64 4:2.032-3.fc36 fedora 55 k perl-Storable aarch64 1:3.25-2.fc36 fedora 93 k perl-Term-ANSIColor noarch 5.01-480.fc36 fedora 48 k perl-Term-Cap noarch 1.17-479.fc36 fedora 22 k perl-Text-ParseWords noarch 3.31-1.fc37 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-2.fc36 fedora 22 k perl-Thread-Queue noarch 3.14-479.fc36 fedora 21 k perl-Time-Local noarch 2:1.300-479.fc36 fedora 34 k perl-if noarch 0.60.900-486.fc37 fedora 19 k perl-macros noarch 4:5.34.1-486.fc37 fedora 16 k perl-mro aarch64 1.25-486.fc37 fedora 33 k perl-overload noarch 1.33-486.fc37 fedora 51 k perl-overloading noarch 0.02-486.fc37 fedora 18 k perl-parent noarch 1:0.238-479.fc36 fedora 14 k perl-podlators noarch 1:4.14-479.fc36 fedora 112 k perl-subs noarch 1.04-486.fc37 fedora 17 k perl-threads aarch64 1:2.26-449.fc36 fedora 56 k perl-threads-shared aarch64 1.62-479.fc36 fedora 43 k Transaction Summary ================================================================================ Install 86 Packages Total download size: 83 M Installed size: 269 M Downloading Packages: (1/86): annobin-docs-10.67-1.fc37.noarch.rpm 224 kB/s | 89 kB 00:00 (2/86): automake-1.16.5-4.fc37.noarch.rpm 39 MB/s | 673 kB 00:00 (3/86): annobin-plugin-gcc-10.67-1.fc37.aarch64 2.0 MB/s | 880 kB 00:00 (4/86): autoconf-2.71-2.fc36.noarch.rpm 1.6 MB/s | 718 kB 00:00 (5/86): emacs-filesystem-27.2-11.fc37.noarch.rp 1.2 MB/s | 9.1 kB 00:00 (6/86): gc-8.0.6-2.fc36.aarch64.rpm 5.4 MB/s | 102 kB 00:00 (7/86): cpp-12.0.1-0.16.fc37.aarch64.rpm 31 MB/s | 9.2 MB 00:00 (8/86): gcc-c++-12.0.1-0.16.fc37.aarch64.rpm 21 MB/s | 11 MB 00:00 (9/86): glibc-devel-2.35.9000-14.fc37.aarch64.r 14 MB/s | 483 kB 00:00 (10/86): gcc-gfortran-12.0.1-0.16.fc37.aarch64. 30 MB/s | 11 MB 00:00 (11/86): groff-base-1.22.4-9.fc36.aarch64.rpm 8.6 MB/s | 1.0 MB 00:00 (12/86): kernel-headers-5.18.0-0.rc3.git0.1.fc3 39 MB/s | 1.3 MB 00:00 (13/86): libasan-12.0.1-0.16.fc37.aarch64.rpm 16 MB/s | 418 kB 00:00 (14/86): libatomic-12.0.1-0.16.fc37.aarch64.rpm 9.8 MB/s | 36 kB 00:00 (15/86): libgfortran-12.0.1-0.16.fc37.aarch64.r 16 MB/s | 429 kB 00:00 (16/86): guile22-2.2.7-5.fc36.aarch64.rpm 36 MB/s | 6.4 MB 00:00 (17/86): libmpc-1.2.1-4.fc36.aarch64.rpm 3.6 MB/s | 62 kB 00:00 (18/86): libtool-2.4.7-1.fc37.aarch64.rpm 36 MB/s | 593 kB 00:00 (19/86): libtool-ltdl-2.4.7-1.fc37.aarch64.rpm 5.0 MB/s | 37 kB 00:00 (20/86): libubsan-12.0.1-0.16.fc37.aarch64.rpm 13 MB/s | 185 kB 00:00 (21/86): libxcrypt-devel-4.4.28-1.fc37.aarch64. 3.9 MB/s | 29 kB 00:00 (22/86): libstdc++-devel-12.0.1-0.16.fc37.aarch 35 MB/s | 2.3 MB 00:00 (23/86): m4-1.4.19-3.fc36.aarch64.rpm 15 MB/s | 293 kB 00:00 (24/86): make-4.3-8.fc37.aarch64.rpm 19 MB/s | 531 kB 00:00 (25/86): muParser-2.3.2-4.fc36.aarch64.rpm 5.4 MB/s | 139 kB 00:00 (26/86): muParser-devel-2.3.2-4.fc36.aarch64.rp 1.1 MB/s | 26 kB 00:00 (27/86): ncurses-6.3-1.20220416.fc37.aarch64.rp 19 MB/s | 403 kB 00:00 (28/86): perl-Carp-1.52-479.fc36.noarch.rpm 6.5 MB/s | 29 kB 00:00 (29/86): perl-B-1.82-486.fc37.aarch64.rpm 19 MB/s | 186 kB 00:00 (30/86): perl-Class-Struct-0.66-486.fc37.noarch 4.2 MB/s | 27 kB 00:00 (31/86): perl-Data-Dumper-2.183-3.fc36.aarch64. 4.7 MB/s | 55 kB 00:00 (32/86): perl-DynaLoader-1.50-486.fc37.aarch64. 3.2 MB/s | 31 kB 00:00 (33/86): perl-Errno-1.33-486.fc37.aarch64.rpm 3.5 MB/s | 20 kB 00:00 (34/86): perl-Exporter-5.76-480.fc36.noarch.rpm 5.2 MB/s | 31 kB 00:00 (35/86): perl-Fcntl-1.14-486.fc37.aarch64.rpm 4.1 MB/s | 25 kB 00:00 (36/86): perl-Fedora-VSP-0.001-25.fc36.noarch.r 2.1 MB/s | 23 kB 00:00 (37/86): perl-File-Basename-2.85-486.fc37.noarc 2.6 MB/s | 22 kB 00:00 (38/86): perl-Encode-3.17-485.fc37.aarch64.rpm 30 MB/s | 1.7 MB 00:00 (39/86): perl-File-Compare-1.100.600-486.fc37.n 1.4 MB/s | 18 kB 00:00 (40/86): perl-File-Copy-2.35-486.fc37.noarch.rp 4.0 MB/s | 25 kB 00:00 (41/86): perl-File-Find-1.39-486.fc37.noarch.rp 5.0 MB/s | 30 kB 00:00 (42/86): perl-File-Path-2.18-479.fc36.noarch.rp 7.6 MB/s | 35 kB 00:00 (43/86): perl-File-Temp-0.231.100-479.fc36.noar 11 MB/s | 59 kB 00:00 (44/86): perl-File-stat-1.09-486.fc37.noarch.rp 2.5 MB/s | 22 kB 00:00 (45/86): perl-FindBin-1.52-486.fc37.noarch.rpm 1.6 MB/s | 19 kB 00:00 (46/86): perl-Getopt-Long-2.52-479.fc36.noarch. 6.3 MB/s | 60 kB 00:00 (47/86): perl-Getopt-Std-1.13-486.fc37.noarch.r 1.9 MB/s | 21 kB 00:00 (48/86): perl-HTTP-Tiny-0.080-2.fc36.noarch.rpm 6.6 MB/s | 55 kB 00:00 (49/86): perl-IPC-Open3-1.21-486.fc37.noarch.rp 2.3 MB/s | 28 kB 00:00 (50/86): perl-MIME-Base64-3.16-479.fc36.aarch64 3.2 MB/s | 30 kB 00:00 (51/86): perl-IO-1.46-486.fc37.aarch64.rpm 3.5 MB/s | 92 kB 00:00 (52/86): perl-Math-Complex-1.59-486.fc37.noarch 9.0 MB/s | 52 kB 00:00 (53/86): perl-POSIX-1.97-486.fc37.aarch64.rpm 11 MB/s | 103 kB 00:00 (54/86): perl-PathTools-3.80-479.fc36.aarch64.r 4.8 MB/s | 85 kB 00:00 (55/86): perl-Pod-Escapes-1.07-479.fc36.noarch. 1.5 MB/s | 20 kB 00:00 (56/86): perl-Pod-Perldoc-3.28.01-480.fc36.noar 5.3 MB/s | 83 kB 00:00 (57/86): perl-Pod-Simple-3.43-3.fc36.noarch.rpm 10 MB/s | 215 kB 00:00 (58/86): perl-Pod-Usage-2.01-479.fc36.noarch.rp 2.8 MB/s | 40 kB 00:00 (59/86): perl-Scalar-List-Utils-1.62-464.fc37.a 7.1 MB/s | 70 kB 00:00 (60/86): perl-SelectSaver-1.02-486.fc37.noarch. 2.3 MB/s | 17 kB 00:00 (61/86): perl-Socket-2.032-3.fc36.aarch64.rpm 8.3 MB/s | 55 kB 00:00 (62/86): perl-Symbol-1.09-486.fc37.noarch.rpm 2.6 MB/s | 19 kB 00:00 (63/86): perl-Storable-3.25-2.fc36.aarch64.rpm 8.4 MB/s | 93 kB 00:00 (64/86): perl-Term-ANSIColor-5.01-480.fc36.noar 6.5 MB/s | 48 kB 00:00 (65/86): gcc-12.0.1-0.16.fc37.aarch64.rpm 23 MB/s | 29 MB 00:01 (66/86): perl-Term-Cap-1.17-479.fc36.noarch.rpm 316 kB/s | 22 kB 00:00 (67/86): perl-Text-ParseWords-3.31-1.fc37.noarc 265 kB/s | 16 kB 00:00 (68/86): perl-Text-Tabs+Wrap-2021.0814-2.fc36.n 3.3 MB/s | 22 kB 00:00 (69/86): perl-Time-Local-1.300-479.fc36.noarch. 5.4 MB/s | 34 kB 00:00 (70/86): perl-Thread-Queue-3.14-479.fc36.noarch 2.6 MB/s | 21 kB 00:00 (71/86): perl-constant-1.33-480.fc36.noarch.rpm 5.5 MB/s | 23 kB 00:00 (72/86): perl-if-0.60.900-486.fc37.noarch.rpm 4.3 MB/s | 19 kB 00:00 (73/86): perl-interpreter-5.34.1-486.fc37.aarch 4.9 MB/s | 76 kB 00:00 (74/86): perl-generators-1.13-5.fc36.noarch.rpm 808 kB/s | 16 kB 00:00 (75/86): perl-lib-0.65-486.fc37.aarch64.rpm 1.2 MB/s | 20 kB 00:00 (76/86): perl-macros-5.34.1-486.fc37.noarch.rpm 544 kB/s | 16 kB 00:00 (77/86): perl-mro-1.25-486.fc37.aarch64.rpm 1.1 MB/s | 33 kB 00:00 (78/86): perl-overload-1.33-486.fc37.noarch.rpm 4.7 MB/s | 51 kB 00:00 (79/86): perl-overloading-0.02-486.fc37.noarch. 2.0 MB/s | 18 kB 00:00 (80/86): perl-podlators-4.14-479.fc36.noarch.rp 9.7 MB/s | 112 kB 00:00 (81/86): perl-parent-0.238-479.fc36.noarch.rpm 651 kB/s | 14 kB 00:00 (82/86): perl-subs-1.04-486.fc37.noarch.rpm 1.9 MB/s | 17 kB 00:00 (83/86): perl-threads-shared-1.62-479.fc36.aarc 2.7 MB/s | 43 kB 00:00 (84/86): perl-threads-2.26-449.fc36.aarch64.rpm 2.5 MB/s | 56 kB 00:00 (85/86): perl-vars-1.05-486.fc37.noarch.rpm 4.7 MB/s | 18 kB 00:00 (86/86): perl-libs-5.34.1-486.fc37.aarch64.rpm 20 MB/s | 2.0 MB 00:00 -------------------------------------------------------------------------------- Total 42 MB/s | 83 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.2.1-4.fc36.aarch64 1/86 Installing : cpp-12.0.1-0.16.fc37.aarch64 2/86 Installing : ncurses-6.3-1.20220416.fc37.aarch64 3/86 Installing : muParser-2.3.2-4.fc36.aarch64 4/86 Installing : m4-1.4.19-3.fc36.aarch64 5/86 Installing : libubsan-12.0.1-0.16.fc37.aarch64 6/86 Installing : libtool-ltdl-2.4.7-1.fc37.aarch64 7/86 Installing : libstdc++-devel-12.0.1-0.16.fc37.aarch64 8/86 Installing : libgfortran-12.0.1-0.16.fc37.aarch64 9/86 Installing : libatomic-12.0.1-0.16.fc37.aarch64 10/86 Installing : libasan-12.0.1-0.16.fc37.aarch64 11/86 Installing : kernel-headers-5.18.0-0.rc3.git0.1.fc37.aarch64 12/86 Installing : libxcrypt-devel-4.4.28-1.fc37.aarch64 13/86 Installing : glibc-devel-2.35.9000-14.fc37.aarch64 14/86 Running scriptlet: groff-base-1.22.4-9.fc36.aarch64 15/86 Installing : groff-base-1.22.4-9.fc36.aarch64 15/86 Running scriptlet: groff-base-1.22.4-9.fc36.aarch64 15/86 Installing : perl-Text-Tabs+Wrap-2021.0814-2.fc36.noarch 16/86 Installing : perl-if-0.60.900-486.fc37.noarch 17/86 Installing : perl-Time-Local-2:1.300-479.fc36.noarch 18/86 Installing : perl-File-Path-2.18-479.fc36.noarch 19/86 Installing : perl-Pod-Escapes-1:1.07-479.fc36.noarch 20/86 Installing : perl-Class-Struct-0.66-486.fc37.noarch 21/86 Installing : perl-POSIX-1.97-486.fc37.aarch64 22/86 Installing : perl-Term-ANSIColor-5.01-480.fc36.noarch 23/86 Installing : perl-IPC-Open3-1.21-486.fc37.noarch 24/86 Installing : perl-HTTP-Tiny-0.080-2.fc36.noarch 25/86 Installing : perl-subs-1.04-486.fc37.noarch 26/86 Installing : perl-File-Temp-1:0.231.100-479.fc36.noarch 27/86 Installing : perl-Term-Cap-1.17-479.fc36.noarch 28/86 Installing : perl-Pod-Simple-1:3.43-3.fc36.noarch 29/86 Installing : perl-Socket-4:2.032-3.fc36.aarch64 30/86 Installing : perl-SelectSaver-1.02-486.fc37.noarch 31/86 Installing : perl-Symbol-1.09-486.fc37.noarch 32/86 Installing : perl-File-stat-1.09-486.fc37.noarch 33/86 Installing : perl-podlators-1:4.14-479.fc36.noarch 34/86 Installing : perl-Pod-Perldoc-3.28.01-480.fc36.noarch 35/86 Installing : perl-Fcntl-1.14-486.fc37.aarch64 36/86 Installing : perl-Text-ParseWords-3.31-1.fc37.noarch 37/86 Installing : perl-mro-1.25-486.fc37.aarch64 38/86 Installing : perl-IO-1.46-486.fc37.aarch64 39/86 Installing : perl-overloading-0.02-486.fc37.noarch 40/86 Installing : perl-Pod-Usage-4:2.01-479.fc36.noarch 41/86 Installing : perl-Errno-1.33-486.fc37.aarch64 42/86 Installing : perl-File-Basename-2.85-486.fc37.noarch 43/86 Installing : perl-Getopt-Std-1.13-486.fc37.noarch 44/86 Installing : perl-MIME-Base64-3.16-479.fc36.aarch64 45/86 Installing : perl-Scalar-List-Utils-5:1.62-464.fc37.aarch64 46/86 Installing : perl-constant-1.33-480.fc36.noarch 47/86 Installing : perl-Storable-1:3.25-2.fc36.aarch64 48/86 Installing : perl-overload-1.33-486.fc37.noarch 49/86 Installing : perl-parent-1:0.238-479.fc36.noarch 50/86 Installing : perl-vars-1.05-486.fc37.noarch 51/86 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glibc-devel-2.35.9000-14.fc37.aarch64 groff-base-1.22.4-9.fc36.aarch64 guile22-2.2.7-5.fc36.aarch64 kernel-headers-5.18.0-0.rc3.git0.1.fc37.aarch64 libasan-12.0.1-0.16.fc37.aarch64 libatomic-12.0.1-0.16.fc37.aarch64 libgfortran-12.0.1-0.16.fc37.aarch64 libmpc-1.2.1-4.fc36.aarch64 libstdc++-devel-12.0.1-0.16.fc37.aarch64 libtool-2.4.7-1.fc37.aarch64 libtool-ltdl-2.4.7-1.fc37.aarch64 libubsan-12.0.1-0.16.fc37.aarch64 libxcrypt-devel-4.4.28-1.fc37.aarch64 m4-1.4.19-3.fc36.aarch64 make-1:4.3-8.fc37.aarch64 muParser-2.3.2-4.fc36.aarch64 muParser-devel-2.3.2-4.fc36.aarch64 ncurses-6.3-1.20220416.fc37.aarch64 perl-B-1.82-486.fc37.aarch64 perl-Carp-1.52-479.fc36.noarch perl-Class-Struct-0.66-486.fc37.noarch perl-Data-Dumper-2.183-3.fc36.aarch64 perl-DynaLoader-1.50-486.fc37.aarch64 perl-Encode-4:3.17-485.fc37.aarch64 perl-Errno-1.33-486.fc37.aarch64 perl-Exporter-5.76-480.fc36.noarch perl-Fcntl-1.14-486.fc37.aarch64 perl-Fedora-VSP-0.001-25.fc36.noarch perl-File-Basename-2.85-486.fc37.noarch perl-File-Compare-1.100.600-486.fc37.noarch perl-File-Copy-2.35-486.fc37.noarch perl-File-Find-1.39-486.fc37.noarch perl-File-Path-2.18-479.fc36.noarch perl-File-Temp-1:0.231.100-479.fc36.noarch perl-File-stat-1.09-486.fc37.noarch perl-FindBin-1.52-486.fc37.noarch perl-Getopt-Long-1:2.52-479.fc36.noarch perl-Getopt-Std-1.13-486.fc37.noarch perl-HTTP-Tiny-0.080-2.fc36.noarch perl-IO-1.46-486.fc37.aarch64 perl-IPC-Open3-1.21-486.fc37.noarch perl-MIME-Base64-3.16-479.fc36.aarch64 perl-Math-Complex-1.59-486.fc37.noarch perl-POSIX-1.97-486.fc37.aarch64 perl-PathTools-3.80-479.fc36.aarch64 perl-Pod-Escapes-1:1.07-479.fc36.noarch perl-Pod-Perldoc-3.28.01-480.fc36.noarch perl-Pod-Simple-1:3.43-3.fc36.noarch perl-Pod-Usage-4:2.01-479.fc36.noarch perl-Scalar-List-Utils-5:1.62-464.fc37.aarch64 perl-SelectSaver-1.02-486.fc37.noarch perl-Socket-4:2.032-3.fc36.aarch64 perl-Storable-1:3.25-2.fc36.aarch64 perl-Symbol-1.09-486.fc37.noarch perl-Term-ANSIColor-5.01-480.fc36.noarch perl-Term-Cap-1.17-479.fc36.noarch perl-Text-ParseWords-3.31-1.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-2.fc36.noarch perl-Thread-Queue-3.14-479.fc36.noarch perl-Time-Local-2:1.300-479.fc36.noarch perl-constant-1.33-480.fc36.noarch perl-generators-1.13-5.fc36.noarch perl-if-0.60.900-486.fc37.noarch perl-interpreter-4:5.34.1-486.fc37.aarch64 perl-lib-0.65-486.fc37.aarch64 perl-libs-4:5.34.1-486.fc37.aarch64 perl-macros-4:5.34.1-486.fc37.noarch perl-mro-1.25-486.fc37.aarch64 perl-overload-1.33-486.fc37.noarch perl-overloading-0.02-486.fc37.noarch perl-parent-1:0.238-479.fc36.noarch perl-podlators-1:4.14-479.fc36.noarch perl-subs-1.04-486.fc37.noarch perl-threads-1:2.26-449.fc36.aarch64 perl-threads-shared-1.62-479.fc36.aarch64 perl-vars-1.05-486.fc37.noarch Complete! Finish: build setup for bionetgen-2.7.0-2.fc37.src.rpm Start: rpmbuild bionetgen-2.7.0-2.fc37.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1642550400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.hZbLLn + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-2.7.0 + /usr/bin/mkdir -p bionetgen-2.7.0 + cd bionetgen-2.7.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.7.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd bionetgen-BioNetGen-2.7.0 ~/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0 ~/build/BUILD/bionetgen-2.7.0 + rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3 cvode-2.6.0/README cvode-2.6.0/INSTALL_NOTES cvode-2.6.0/LICENSE cvode-2.6.0/Makefile.in cvode-2.6.0/configure.ac cvode-2.6.0/acinclude.m4 cvode-2.6.0/config.hin cvode-2.6.0/configure cvode-2.6.0/CMakeLists.txt cvode-2.6.0/config/config.guess cvode-2.6.0/config/config.sub cvode-2.6.0/config/install-sh cvode-2.6.0/config/mkinstalldirs cvode-2.6.0/config/rminstalldirs cvode-2.6.0/config/ltmain.sh cvode-2.6.0/config/mod_c.m4 cvode-2.6.0/config/mod_fortran.m4 cvode-2.6.0/config/cust_general.m4 cvode-2.6.0/config/CheckFortranFunctionExists.cmake cvode-2.6.0/config/SundialsFortran.cmake cvode-2.6.0/config/SundialsLapack.cmake cvode-2.6.0/config/SundialsMPIC.cmake cvode-2.6.0/config/SundialsMPIF.cmake cvode-2.6.0/config/FindLAPACK.cmake cvode-2.6.0/config/FindBLAS.cmake cvode-2.6.0/config/FindMPI.cmake cvode-2.6.0/bin/sundials-config.in cvode-2.6.0/bin/fortran-update.in cvode-2.6.0/bin/makefile-update.in cvode-2.6.0/include/sundials/sundials_config.in cvode-2.6.0/include/sundials/sundials_types.h cvode-2.6.0/include/sundials/sundials_math.h cvode-2.6.0/include/sundials/sundials_nvector.h cvode-2.6.0/include/sundials/sundials_fnvector.h cvode-2.6.0/include/sundials/sundials_dense.h cvode-2.6.0/include/sundials/sundials_direct.h cvode-2.6.0/include/sundials/sundials_band.h cvode-2.6.0/include/sundials/sundials_lapack.h cvode-2.6.0/include/sundials/sundials_spgmr.h cvode-2.6.0/include/sundials/sundials_spbcgs.h cvode-2.6.0/include/sundials/sundials_sptfqmr.h cvode-2.6.0/include/sundials/sundials_iterative.h cvode-2.6.0/include/nvector/nvector_serial.h cvode-2.6.0/include/nvector/nvector_parallel.h cvode-2.6.0/src/sundials/README cvode-2.6.0/src/sundials/Makefile.in cvode-2.6.0/src/sundials/CMakeLists.txt cvode-2.6.0/src/sundials/sundials_math.c cvode-2.6.0/src/sundials/sundials_nvector.c cvode-2.6.0/src/sundials/sundials_dense.c cvode-2.6.0/src/sundials/sundials_direct.c cvode-2.6.0/src/sundials/sundials_band.c cvode-2.6.0/src/sundials/sundials_spgmr.c cvode-2.6.0/src/sundials/sundials_spbcgs.c cvode-2.6.0/src/sundials/sundials_sptfqmr.c cvode-2.6.0/src/sundials/sundials_iterative.c cvode-2.6.0/src/nvec_ser/README cvode-2.6.0/src/nvec_ser/Makefile.in cvode-2.6.0/src/nvec_ser/CMakeLists.txt cvode-2.6.0/src/nvec_ser/fnvector_serial.h cvode-2.6.0/src/nvec_ser/nvector_serial.c cvode-2.6.0/src/nvec_ser/fnvector_serial.c cvode-2.6.0/src/nvec_par/README cvode-2.6.0/src/nvec_par/Makefile.in cvode-2.6.0/src/nvec_par/CMakeLists.txt cvode-2.6.0/src/nvec_par/fnvector_parallel.h cvode-2.6.0/src/nvec_par/nvector_parallel.c cvode-2.6.0/src/nvec_par/fnvector_parallel.c cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in cvode-2.6.0/examples/templates/makefile_serial_C_ex.in cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in cvode-2.6.0/doc/cvode/cv_guide.pdf cvode-2.6.0/doc/cvode/cv_examples.pdf cvode-2.6.0/include/cvode/cvode.h cvode-2.6.0/include/cvode/cvode_direct.h cvode-2.6.0/include/cvode/cvode_dense.h cvode-2.6.0/include/cvode/cvode_band.h cvode-2.6.0/include/cvode/cvode_lapack.h cvode-2.6.0/include/cvode/cvode_diag.h cvode-2.6.0/include/cvode/cvode_spgmr.h cvode-2.6.0/include/cvode/cvode_spbcgs.h cvode-2.6.0/include/cvode/cvode_sptfqmr.h cvode-2.6.0/include/cvode/cvode_spils.h cvode-2.6.0/include/cvode/cvode_bandpre.h cvode-2.6.0/include/cvode/cvode_bbdpre.h cvode-2.6.0/src/cvode/LICENSE cvode-2.6.0/src/cvode/README cvode-2.6.0/src/cvode/Makefile.in cvode-2.6.0/src/cvode/CMakeLists.txt cvode-2.6.0/src/cvode/cvode.c cvode-2.6.0/src/cvode/cvode_io.c cvode-2.6.0/src/cvode/cvode_direct.c cvode-2.6.0/src/cvode/cvode_dense.c cvode-2.6.0/src/cvode/cvode_band.c cvode-2.6.0/src/cvode/cvode_lapack.c cvode-2.6.0/src/cvode/cvode_diag.c cvode-2.6.0/src/cvode/cvode_spils.c cvode-2.6.0/src/cvode/cvode_spgmr.c cvode-2.6.0/src/cvode/cvode_spbcgs.c cvode-2.6.0/src/cvode/cvode_sptfqmr.c cvode-2.6.0/src/cvode/cvode_bandpre.c cvode-2.6.0/src/cvode/cvode_bbdpre.c cvode-2.6.0/src/cvode/cvode_impl.h cvode-2.6.0/src/cvode/cvode_direct_impl.h cvode-2.6.0/src/cvode/cvode_diag_impl.h cvode-2.6.0/src/cvode/cvode_spils_impl.h cvode-2.6.0/src/cvode/cvode_bandpre_impl.h cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h cvode-2.6.0/src/cvode/fcmix/Makefile.in cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt cvode-2.6.0/src/cvode/fcmix/fcvode.c cvode-2.6.0/src/cvode/fcmix/fcvewt.c cvode-2.6.0/src/cvode/fcmix/fcvpreco.c cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c cvode-2.6.0/src/cvode/fcmix/fcvband.c cvode-2.6.0/src/cvode/fcmix/fcvdense.c cvode-2.6.0/src/cvode/fcmix/fcvlapack.c cvode-2.6.0/src/cvode/fcmix/fcvlapband.c cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c cvode-2.6.0/src/cvode/fcmix/fcvbp.c cvode-2.6.0/src/cvode/fcmix/fcvbbd.c cvode-2.6.0/src/cvode/fcmix/fcvroot.c cvode-2.6.0/src/cvode/fcmix/fcvode.h cvode-2.6.0/src/cvode/fcmix/fcvbp.h cvode-2.6.0/src/cvode/fcmix/fcvbbd.h cvode-2.6.0/src/cvode/fcmix/fcvroot.h cvode-2.6.0/examples/cvode/serial/README cvode-2.6.0/examples/cvode/serial/Makefile.in cvode-2.6.0/examples/cvode/serial/CMakeLists.txt cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out cvode-2.6.0/examples/cvode/fcmix_serial/README cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out cvode-2.6.0/examples/cvode/parallel/README cvode-2.6.0/examples/cvode/parallel/Makefile.in cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/README cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out ~/build/BUILD/bionetgen-2.7.0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.eNoAm6 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh bionetgen 2.7.0-2.fc37 aarch64 + cd bionetgen-2.7.0 + pushd bionetgen-BioNetGen-2.7.0/bng2/Network3 ~/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3 ~/build/BUILD/bionetgen-2.7.0 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' cvode-2.6.0/configure.ac + sed -i 's/muparser_.*//' configure.ac Makefile.am + sed -i -r 's!(run_network_LDADD =).*!\1 libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser!' src/Makefile.am + autoreconf -iv --no-recursive autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal -I m4 aclocal: warning: couldn't open directory 'm4': No such file or directory autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: aclocal -I m4 autoreconf: running: /usr/bin/autoconf autoreconf: running: /usr/bin/autoheader autoreconf: running: automake --add-missing --copy --no-force configure.ac:12: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' autoreconf: Leaving directory '.' + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-04-26 03:15:37.274267567 +0000 +++ ./configure 2022-04-26 03:15:39.534281652 +0000 @@ -1714,7 +1714,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-04-26 03:15:39.534281652 +0000 +++ ./configure 2022-04-26 03:15:39.584281964 +0000 @@ -7561,7 +7561,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="$SED -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -19585,7 +19585,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./cvode-2.6.0/configure + diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure --- ./cvode-2.6.0/configure.backup 2009-05-10 00:03:02.000000000 +0000 +++ ./cvode-2.6.0/configure 2022-04-26 03:15:39.714282774 +0000 @@ -13751,7 +13751,7 @@ sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Transform an extracted symbol line into a proper C declaration -lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'" +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./cvode-2.6.0/config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.sub ++ basename ./cvode-2.6.0/config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./cvode-2.6.0/config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './cvode-2.6.0/config/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./cvode-2.6.0/config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.guess ++ basename ./cvode-2.6.0/config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./cvode-2.6.0/config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './cvode-2.6.0/config/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./cvode-2.6.0/config/ltmain.sh + ./configure --build=aarch64-redhat-linux-gnu --host=aarch64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CC=gcc CXX=g++ F77=gfortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for aarch64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for aarch64-redhat-linux-gnu-ar... no checking for aarch64-redhat-linux-gnu-lib... no checking for aarch64-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for aarch64-redhat-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... aarch64-redhat-linux-gnu checking host system type... aarch64-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-redhat-linux-gnu file names to aarch64-redhat-linux-gnu format... func_convert_file_noop checking how to convert aarch64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-redhat-linux-gnu-file... no checking for file... file checking for aarch64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for aarch64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for aarch64-redhat-linux-gnu-strip... no checking for strip... strip checking for aarch64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 7567: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for aarch64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for aarch64-redhat-linux-gnu-gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--build=aarch64-redhat-linux-gnu' '--host=aarch64-redhat-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=aarch64-redhat-linux-gnu' 'host_alias=aarch64-redhat-linux-gnu' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld' 'LT_SYS_LIBRARY_PATH=/usr/lib64:' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' --cache-file=/dev/null --srcdir=. --------------------------------- Running SUNDIALS Configure Script --------------------------------- Initialization -------------- checking build system type... aarch64-redhat-linux-gnu checking host system type... aarch64-redhat-linux-gnu checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c C Compiler Settings ------------------- checking for aarch64-redhat-linux-gnu-cc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking floating-point data type to use... double checking for C compiler flags... none checking how to run the C preprocessor... gcc -E checking for C/C++ preprocessor flags... none checking for linker flags... none checking for extra libraries... none checking for ANSI C header files... yes checking for stdlib.h... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for abs in -lm... yes checking for fabs in -lm... yes checking for pow in -lm... yes checking for sqrt in -lm... yes checking for additional required C libraries... -lm checking for int... yes checking size of int... 4 checking for long int... yes checking size of long int... 8 checking for double... yes checking size of double... 8 checking for egrep... (cached) /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking if gcc is a C++ compiler... no Fortran Settings ---------------- checking for aarch64-redhat-linux-gnu-f77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for extra Fortran compiler flags... none checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/aarch64-redhat-linux/12 -L/usr/lib/gcc/aarch64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/12/../../.. -lgfortran -lm checking which linker to use... gfortran checking for Fortran name-mangling scheme of C identifiers... lower case + one underscore checking for Fortran name-mangling scheme of C identifiers with underscores... lower case + one underscore checking for dgemm_... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking for dgemm_ in -lblas... no checking for dgemm_ in -lblas... (cached) no checking for Blas/Lapack library linkage... "no" Unable to determine Blas/Lapack library linkage. Try using --with-blas and --with-lapack. Disabling compilation of Blas/Lapack interfaces... MPI-C Settings -------------- checking if using MPI-C script... yes checking if absolute path to mpicc was given... no checking for mpicc... none Unable to find a functional MPI-C compiler. Try using --with-mpicc to specify a MPI-C compiler script, --with-mpi-incdir, --with-mpi-libdir and --with-mpi-libs to specify the locations of all relevant MPI files, or --with-mpi-root to specify the base installation directory of the MPI implementation to be used. Disabling the parallel NVECTOR module and all parallel examples... configure: WARNING: cannot find MPI-C compiler Libtool Settings ---------------- checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for aarch64-redhat-linux-gnu-ar... no checking for ar... ar checking for aarch64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for aarch64-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Create Makefiles and configuration files ---------------------------------------- configure: creating ./config.status config.status: creating Makefile config.status: creating src/sundials/Makefile config.status: creating src/nvec_ser/Makefile config.status: creating src/cvode/Makefile config.status: creating src/cvode/fcmix/Makefile config.status: creating include/sundials/sundials_config.h config.status: creating bin/sundials-config config.status: creating config.h *************** * WARNING * *************** At least one warning was issued. Some features were disabled. Review the configure output and/or the contents of config.log before proceeding with the build. ------------------------------ SUNDIALS Configuration Summary ------------------------------ Configuration ------------- Host System: aarch64-redhat-linux-gnu Build System: aarch64-redhat-linux-gnu C Preprocessor: gcc -E C Preprocessor Flags: C Compiler: gcc C Compiler Flags -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection C Linker: gcc Linker Flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld Libraries: -lm Fortran Compiler: gfortran Fortran Compiler Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules Fortran Linker: gfortran Extra Fortran Libraries: -L/usr/lib/gcc/aarch64-redhat-linux/12 -L/usr/lib/gcc/aarch64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/12/../../.. -lgfortran -lm srcdir: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0 builddir: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0 prefix: /usr exec_prefix: /usr includedir: /usr/include libdir: /usr/lib64 Modules ------- CVODE FCVODE Type 'make' and then 'make install' to build and install SUNDIALS 2.4.0. ---------------------------------- Finished SUNDIALS Configure Script ---------------------------------- ++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C cvode-2.6.0 V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' ---------------------- Make src/sundials... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c -o sundials_direct.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c -o sundials_band.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c -o sundials_dense.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c -o sundials_iterative.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c -o sundials_math.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c -o sundials_nvector.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c -o sundials_spgmr.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c -o sundials_spbcgs.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c -o sundials_sptfqmr.o make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' ---------------------- Make src/nvec_ser... ---------------------- make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c -o fnvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fnvecserial.la fnvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -lm -version-info 0:2:0 mkdir .libs ar cru .libs/libsundials_fnvecserial.a fnvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_fnvecserial.a creating libsundials_fnvecserial.la (cd .libs && rm -f libsundials_fnvecserial.la && ln -s ../libsundials_fnvecserial.la libsundials_fnvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c -o nvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_nvecserial.la nvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -lm -version-info 0:2:0 ar cru .libs/libsundials_nvecserial.a nvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_nvecserial.a creating libsundials_nvecserial.la (cd .libs && rm -f libsundials_nvecserial.la && ln -s ../libsundials_nvecserial.la libsundials_nvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' ---------------------- Make src/cvode... ---------------------- make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c -o cvode_band.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c -o cvode_direct.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c -o cvode_io.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c -o cvode_dense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c -o cvode_diag.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c -o cvode_spils.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c -o cvode_spbcgs.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c -o cvode_spgmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c -o cvode_sptfqmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c -o cvode_bandpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c -o cvode_bbdpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c -o cvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Nothing to be done for 'lib_without_bl'. make[4]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_cvode.la cvode.lo cvode_io.lo cvode_direct.lo cvode_band.lo cvode_dense.lo cvode_diag.lo cvode_spils.lo cvode_spbcgs.lo cvode_spgmr.lo cvode_sptfqmr.lo cvode_bandpre.lo cvode_bbdpre.lo ../../src/sundials/sundials_band.lo ../../src/sundials/sundials_dense.lo ../../src/sundials/sundials_direct.lo ../../src/sundials/sundials_iterative.lo ../../src/sundials/sundials_spgmr.lo ../../src/sundials/sundials_spbcgs.lo ../../src/sundials/sundials_sptfqmr.lo ../../src/sundials/sundials_math.lo ../../src/sundials/sundials_nvector.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -lm -version-info 1:0:0 mkdir .libs ar cru .libs/libsundials_cvode.a cvode.o cvode_io.o cvode_direct.o cvode_band.o cvode_dense.o cvode_diag.o cvode_spils.o cvode_spbcgs.o cvode_spgmr.o cvode_sptfqmr.o cvode_bandpre.o cvode_bbdpre.o ../../src/sundials/sundials_band.o ../../src/sundials/sundials_dense.o ../../src/sundials/sundials_direct.o ../../src/sundials/sundials_iterative.o ../../src/sundials/sundials_spgmr.o ../../src/sundials/sundials_spbcgs.o ../../src/sundials/sundials_sptfqmr.o ../../src/sundials/sundials_math.o ../../src/sundials/sundials_nvector.o ranlib .libs/libsundials_cvode.a creating libsundials_cvode.la (cd .libs && rm -f libsundials_cvode.la && ln -s ../libsundials_cvode.la libsundials_cvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode' ---------------------- Make src/cvode/fcmix... ---------------------- make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c -o fcvdense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c -o fcvjtimes.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c -o fcvband.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c -o fcvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c -o fcvbp.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c -o fcvbbd.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c -o fcvpreco.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c -o fcvroot.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c -o fcvewt.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fcvode.la fcvode.lo fcvband.lo fcvdense.lo fcvjtimes.lo fcvpreco.lo fcvbbd.lo fcvbp.lo fcvroot.lo fcvewt.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -lm -static -version-info 0:1:0 mkdir .libs ar cru .libs/libsundials_fcvode.a fcvode.o fcvband.o fcvdense.o fcvjtimes.o fcvpreco.o fcvbbd.o fcvbp.o fcvroot.o fcvewt.o ranlib .libs/libsundials_fcvode.a creating libsundials_fcvode.la (cd .libs && rm -f libsundials_fcvode.la && ln -s ../libsundials_fcvode.la libsundials_fcvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C src V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp run_network.cpp: In function 'int main(int, char**)': run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i/*, j*/; | ^ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)': network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1132 | register int i; | ^ network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)': network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1543 | register int i; | ^ network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)': network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1925 | register int i; | ^ network.cpp: In function 'int n_species_active()': network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2068 | register int i; | ^ network.cpp: In function 'int get_conc_network(double*)': network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2088 | register int i; | ^ network.cpp: In function 'int set_conc_network(double*)': network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^ network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^~~~~~~~~ network.cpp: In function 'int rxn_rates_network(double*, int)': network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2729 | register int i; | ^ network.cpp: In function 'int print_derivs_network(FILE*)': network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2957 | register int i/*,j*/; | ^ network.cpp: In function 'int print_derivs_species_network(FILE*)': network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2990 | register int i/*,j*/; | ^ network.cpp: In function 'int print_rates_network(FILE*, int)': network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3019 | register int i; | ^ network.cpp: In function 'void sparse_jac_matlab(FILE*)': network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)': network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)': network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ network.cpp: In function 'int print_flux_network(FILE*, double, int)': network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 4037 | register int i; | ^ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 In file included from util/mathutils/cabs.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 In file included from util/mathutils/cadd.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 In file included from util/mathutils/cconj.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/allocate.c: In function 'ALLOC_MATRIX': util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] 9 | register int i,j; | ^ util/mathutils/allocate.c: In function 'IALLOC_MATRIX': util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] 100 | register int i,j; | ^ util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] 191 | register int i,j; | ^ In file included from util/mathutils/allocate.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 In file included from util/mathutils/cmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 In file included from util/mathutils/complex_zero.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 In file included from util/mathutils/cprob.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 In file included from util/mathutils/copy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 In file included from util/mathutils/csub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 In file included from util/mathutils/dotp.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/expi.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 In file included from util/mathutils/eigensystem.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 In file included from util/mathutils/gram_schmidt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/herm_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/herm_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 In file included from util/mathutils/icmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 In file included from util/mathutils/init.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/linsolve.c: In function 'LINSOLVE': util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] 16 | register int i,j; | ^ util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] 16 | register int i,j; | ^ In file included from util/mathutils/linsolve.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/matherr.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 In file included from util/mathutils/integration.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 In file included from util/mathutils/matrix_elt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 In file included from util/mathutils/matrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/matrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 In file included from util/mathutils/matrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/matrixexp.c:5: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 util/mathutils/minimum.c: In function 'MIN_BRACKET': util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] 17 | double ulim,u,r,q,fu,dum; | ^~~ In file included from util/mathutils/minimum.c:3: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ util/mathutils/minimum.c: In function 'MIN_FIND': util/mathutils/minimum.c:117:38: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized] 117 | if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) | ~~~~~^~~~~~ util/mathutils/minimum.c:95:12: note: 'e' was declared here 95 | double e=0.0; | ^ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/normsq.c: In function 'NORMSQ': util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] 13 | double norm; | ^~~~ In file included from util/mathutils/normsq.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 util/mathutils/norm.c: In function 'NORM': util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] 14 | double norm; | ^~~~ In file included from util/mathutils/norm.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/project.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 In file included from util/mathutils/rcmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/random.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~~ util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~ In file included from util/mathutils/rect_transpose.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 In file included from util/mathutils/roots.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ util/mathutils/roots.c: In function 'ROOT_FIND': util/mathutils/roots.c:69:24: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized] 69 | min2=fabs(e*q); | ~^~ util/mathutils/roots.c:32:29: note: 'e' was declared here 32 | double a=x1,b=x2,c=x2,d,e,min1,min2; | ^ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 In file included from util/mathutils/scale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 In file included from util/mathutils/runge-kutta.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 In file included from util/mathutils/splines.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 In file included from util/mathutils/sum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/sym_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/sym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/sym_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/sympos_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main() | ^~~~ In file included from util/mathutils/test_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main(){ | ^~~~ util/mathutils/testdummy.c: In function 'main': util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] 5 | int incx=1; | ^~~~ util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | scanf("%d", &n); | ^~~~~~~~~~~~~~~ util/mathutils/testdummy.c:15:9: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 15 | scanf("%lf", x+i); | ^~~~~~~~~~~~~~~~~ In file included from util/mathutils/testdummy.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 In file included from util/mathutils/svd.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] 7 | main() | ^~~~ In file included from util/mathutils/testspline.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main(int argc, char *argv[]){ | ^~~~ util/mathutils/testgram.c: In function 'main': util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^ util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^ util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~~ util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~ util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] 5 | int nr, n_run; | ^~ In file included from util/mathutils/testgram.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] 3 | main(int argc, char *argv[]){ | ^~~~ util/mathutils/testsvd.c: In function 'main': util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~~ util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^~ util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; | ^ In file included from util/mathutils/testsvd.c:1: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 In file included from util/mathutils/vector_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 In file included from util/mathutils/vector_dist.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 In file included from util/mathutils/zcopy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 In file included from util/mathutils/zdotc.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 In file included from util/mathutils/zdotu.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 In file included from util/mathutils/znorm.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1 In file included from util/mathutils/znormsq.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zrscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 In file included from util/mathutils/zsum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] 6 | main (int argc, char *argv[]) | ^~~~ util/mathutils/testutils.c: In function 'main': util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] 15 | dcomplex z1; | ^~ util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] 10 | int seed; | ^~~~ util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] 8 | int i,j,k; | ^ In file included from util/mathutils/testutils.c:2: util/mathutils/mathutils.h: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' In file included from util/mathutils/zsym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cr .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a ../cvode-2.6.0/src/nvec_ser/.libs/libsundials_nvecserial.a ../cvode-2.6.0/src/cvode/.libs/libsundials_cvode.a -lm -lmuparser make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' + popd ~/build/BUILD/bionetgen-2.7.0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6rq2mG + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 ++ dirname /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.7.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 'INSTALL=/usr/bin/install -p' -C bionetgen-BioNetGen-2.7.0/bng2/Network3/src make: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Network3/src' + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bionetgen-BioNetGen-2.7.0/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen/ + cp -r bionetgen-BioNetGen-2.7.0/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen/ + cp -a bionetgen-BioNetGen-2.7.0/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen/ + rm -f /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_aarch64-linux + rm -f /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.7.0-2.fc37 --unique-debug-suffix -2.7.0-2.fc37.aarch64 --unique-debug-src-base bionetgen-2.7.0-2.fc37.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.7.0 extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/bin/run_network original debug info size: 7404kB, size after compression: 5480kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 1829 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.fNfGGq + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.7.0/.package_note-bionetgen-2.7.0-2.fc37.aarch64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh bionetgen 2.7.0-2.fc37 aarch64 + cd bionetgen-2.7.0 + pushd bionetgen-BioNetGen-2.7.0/bng2/Models2 ~/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Models2 ~/build/BUILD/bionetgen-2.7.0 + install -pm 755 ../Network3/src/run_network -D ./bin/run_network_aarch64-linux + install -pm 755 ../Network3/src/run_network -D ../bin/run_network_aarch64-linux Running some tests ... + echo 'Running some tests ...' + ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl BioNetGen version 2.7.0 Reading from file CaOscillate_Func.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Func ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 2.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Wrote network in net format to ./CaOscillate_Func.net. CPU TIME: generate_network 0.02 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net. Wrote network in net format to ./CaOscillate_Func.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200 [simulation PID is: 15653] run_network 3.0 Read 17 parameters from ./CaOscillate_Func.net Read 4 species from ./CaOscillate_Func.net Read 4 group(s) from ./CaOscillate_Func.net Read 4 function(s) from ./CaOscillate_Func.net Read 8 reaction(s) from ./CaOscillate_Func.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 719 851 0.20 753 889 0.30 788 924 0.40 822 962 0.50 857 997 0.60 891 1035 0.70 926 1070 0.80 960 1108 0.90 995 1147 1.00 1029 1181 1.10 1064 1221 1.20 1098 1257 1.30 1133 1299 1.40 1167 1335 1.50 1215 1393 1.60 1263 1449 1.70 1324 1520 1.80 1389 1596 1.90 1460 1680 2.00 1544 1781 2.10 1620 1865 2.20 1697 1946 2.30 1749 2005 2.40 1800 2063 2.50 1854 2128 2.60 1993 2299 2.70 2464 2852 2.80 2562 2973 2.90 2607 3025 3.00 2657 3086 3.10 2718 3156 3.20 2779 3224 3.30 2839 3290 3.40 2900 3355 3.50 2961 3420 3.60 3018 3482 3.70 3071 3550 3.80 3200 3708 3.90 3345 3881 4.00 3456 4003 4.10 3521 4073 4.20 3572 4129 4.30 3624 4186 4.40 3671 4234 4.50 3707 4279 4.60 3753 4333 4.70 3799 4383 4.80 3856 4451 4.90 3913 4526 5.00 3969 4585 5.10 4010 4632 5.20 4047 4675 5.30 4080 4709 5.40 4105 4739 5.50 4129 4764 5.60 4154 4797 5.70 4178 4823 5.80 4201 4848 5.90 4221 4871 6.00 4241 4897 6.10 4261 4918 6.20 4281 4943 6.30 4294 4956 6.40 4307 4970 6.50 4321 4984 6.60 4334 4997 6.70 4347 5014 6.80 4356 5024 6.90 4365 5033 7.00 4374 5042 7.10 4383 5052 7.20 4392 5062 7.30 4401 5071 7.40 4410 5086 7.50 4419 5095 7.60 4427 5103 7.70 4436 5113 7.80 4445 5123 7.90 4457 5142 8.00 4469 5165 8.10 4481 5179 8.20 4491 5192 8.30 4504 5211 8.40 4522 5240 8.50 4543 5268 8.60 4568 5298 8.70 4607 5350 8.80 4663 5420 8.90 4772 5555 9.00 5104 5945 9.10 5399 6270 9.20 5507 6389 9.30 5546 6435 9.40 5561 6451 9.50 5573 6463 9.60 5585 6475 9.70 5597 6492 9.80 5608 6503 9.90 5620 6516 10.00 5632 6528 10.10 5644 6541 10.20 5656 6558 10.30 5668 6570 10.40 5680 6584 10.50 5692 6596 10.60 5703 6609 10.70 5715 6626 10.80 5727 6639 10.90 5739 6653 11.00 5751 6665 11.10 5767 6683 11.20 5783 6704 11.30 5799 6721 11.40 5815 6738 11.50 5831 6754 11.60 5847 6776 11.70 5863 6794 11.80 5879 6812 11.90 5895 6834 12.00 5911 6850 12.10 5927 6868 12.20 5943 6886 12.30 5959 6908 12.40 5975 6926 12.50 5991 6942 12.60 6012 6967 12.70 6034 6994 12.80 6056 7020 12.90 6078 7048 13.00 6100 7072 13.10 6128 7108 13.20 6158 7140 13.30 6188 7177 13.40 6223 7216 13.50 6263 7264 13.60 6311 7322 13.70 6366 7387 13.80 6435 7464 13.90 6507 7550 14.00 6594 7646 14.10 6673 7738 14.20 6750 7820 14.30 6803 7880 14.40 6856 7939 14.50 6911 8005 14.60 7038 8162 14.70 7513 8728 14.80 7634 8876 14.90 7681 8925 15.00 7731 8985 15.10 7793 9054 15.20 7848 9121 15.30 7904 9185 15.40 7960 9246 15.50 8016 9306 15.60 8072 9366 15.70 8129 9434 15.80 8253 9587 15.90 8393 9752 16.00 8510 9880 16.10 8578 9953 16.20 8634 10013 16.30 8690 10073 16.40 8738 10126 16.50 8776 10172 16.60 8820 10221 16.70 8870 10277 16.80 8928 10346 16.90 8988 10415 17.00 9046 10480 17.10 9088 10524 17.20 9126 10568 17.30 9160 10607 17.40 9185 10632 17.50 9211 10659 17.60 9236 10692 17.70 9261 10718 17.80 9284 10747 17.90 9304 10769 18.00 9325 10791 18.10 9346 10817 18.20 9365 10837 18.30 9376 10850 18.40 9385 10859 18.50 9394 10874 18.60 9404 10884 18.70 9413 10894 18.80 9422 10903 18.90 9431 10912 19.00 9440 10921 19.10 9449 10930 19.20 9459 10945 19.30 9468 10954 19.40 9477 10964 19.50 9486 10973 19.60 9495 10984 19.70 9505 10994 19.80 9514 11012 19.90 9523 11021 20.00 9532 11031 Time course of concentrations written to file ./CaOscillate_Func.cdat. Time course of groups written to file ./CaOscillate_Func.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Func.cdat CPU TIME: simulate 0.02 s. Finished processing file CaOscillate_Func.bngl. CPU TIME: total 0.09 s. BioNetGen version 2.7.0 Reading from file CaOscillate_Sat.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Sat ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Sat.net. CPU TIME: generate_network 0.02 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net. Wrote network in net format to ./CaOscillate_Sat.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200 [simulation PID is: 15655] run_network 3.0 Read 17 parameters from ./CaOscillate_Sat.net Read 4 species from ./CaOscillate_Sat.net Read 4 group(s) from ./CaOscillate_Sat.net Read 0 function(s) from ./CaOscillate_Sat.net Read 8 reaction(s) from ./CaOscillate_Sat.net 8 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 717 850 0.20 741 879 0.30 765 904 0.40 790 930 0.50 814 960 0.60 838 985 0.70 863 1015 0.80 887 1040 0.90 911 1066 1.00 936 1099 1.10 961 1129 1.20 993 1171 1.30 1025 1207 1.40 1064 1257 1.50 1108 1309 1.60 1155 1366 1.70 1210 1431 1.80 1284 1514 1.90 1358 1601 2.00 1442 1703 2.10 1521 1789 2.20 1596 1869 2.30 1649 1928 2.40 1701 1987 2.50 1757 2053 2.60 1896 2222 2.70 2360 2768 2.80 2463 2900 2.90 2511 2957 3.00 2560 3015 3.10 2618 3082 3.20 2677 3148 3.30 2735 3213 3.40 2793 3275 3.50 2852 3338 3.60 2910 3400 3.70 2969 3470 3.80 3099 3626 3.90 3243 3798 4.00 3343 3906 4.10 3413 3985 4.20 3479 4055 4.30 3546 4126 4.40 3590 4175 4.50 3634 4222 4.60 3679 4275 4.70 3723 4327 4.80 3778 4394 4.90 3835 4465 5.00 3890 4527 5.10 3930 4571 5.20 3966 4613 5.30 3999 4651 5.40 4023 4676 5.50 4047 4702 5.60 4071 4732 5.70 4095 4759 5.80 4117 4787 5.90 4138 4811 6.00 4158 4833 6.10 4178 4854 6.20 4198 4879 6.30 4211 4892 6.40 4225 4907 6.50 4238 4924 6.60 4252 4938 6.70 4265 4951 6.80 4274 4961 6.90 4283 4970 7.00 4292 4979 7.10 4301 4989 7.20 4310 5003 7.30 4319 5012 7.40 4328 5022 7.50 4337 5031 7.60 4345 5040 7.70 4354 5050 7.80 4363 5064 7.90 4372 5079 8.00 4381 5088 8.10 4390 5099 8.20 4400 5115 8.30 4412 5134 8.40 4431 5179 8.50 4456 5205 8.60 4483 5240 8.70 4519 5286 8.80 4575 5356 8.90 4682 5482 9.00 5014 5875 9.10 5309 6200 9.20 5417 6315 9.30 5456 6361 9.40 5471 6377 9.50 5482 6388 9.60 5493 6404 9.70 5505 6417 9.80 5516 6428 9.90 5527 6440 10.00 5539 6452 10.10 5550 6468 10.20 5561 6479 10.30 5573 6493 10.40 5584 6504 10.50 5595 6517 10.60 5607 6535 10.70 5618 6546 10.80 5630 6560 10.90 5643 6575 11.00 5658 6595 11.10 5673 6610 11.20 5689 6627 11.30 5704 6644 11.40 5719 6665 11.50 5735 6681 11.60 5750 6698 11.70 5765 6715 11.80 5781 6737 11.90 5796 6753 12.00 5811 6769 12.10 5827 6787 12.20 5842 6808 12.30 5857 6825 12.40 5873 6841 12.50 5892 6863 12.60 5913 6889 12.70 5934 6912 12.80 5955 6935 12.90 5975 6961 13.00 6001 6992 13.10 6029 7028 13.20 6057 7058 13.30 6095 7112 13.40 6133 7157 13.50 6171 7203 13.60 6220 7263 13.70 6275 7328 13.80 6345 7407 13.90 6415 7492 14.00 6497 7592 14.10 6572 7678 14.20 6647 7757 14.30 6703 7819 14.40 6753 7876 14.50 6805 7938 14.60 6932 8095 14.70 7381 8618 14.80 7498 8747 14.90 7552 8807 15.00 7599 8867 15.10 7663 8938 15.20 7718 9002 15.30 7774 9065 15.40 7831 9127 15.50 7887 9187 15.60 7944 9244 15.70 8001 9317 15.80 8126 9469 15.90 8281 9649 16.00 8392 9771 16.10 8457 9841 16.20 8507 9898 16.30 8557 9954 16.40 8604 10006 16.50 8640 10047 16.60 8685 10100 16.70 8730 10154 16.80 8785 10215 16.90 8841 10289 17.00 8895 10347 17.10 8935 10395 17.20 8971 10437 17.30 9004 10471 17.40 9028 10499 17.50 9051 10525 17.60 9075 10551 17.70 9098 10580 17.80 9120 10605 17.90 9140 10629 18.00 9160 10655 18.10 9181 10677 18.20 9200 10701 18.30 9210 10716 18.40 9221 10728 18.50 9232 10740 18.60 9243 10751 18.70 9254 10762 18.80 9265 10773 18.90 9276 10788 19.00 9287 10799 19.10 9298 10810 19.20 9309 10821 19.30 9320 10832 19.40 9331 10847 19.50 9342 10858 19.60 9353 10869 19.70 9364 10880 19.80 9375 10891 19.90 9386 10903 20.00 9397 10919 Time course of concentrations written to file ./CaOscillate_Sat.cdat. Time course of groups written to file ./CaOscillate_Sat.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Sat.cdat CPU TIME: simulate 0.04 s. Finished processing file CaOscillate_Sat.bngl. CPU TIME: total 0.08 s. BioNetGen version 2.7.0 Reading from file catalysis.bngl (level 0) CPU TIME: version 0.00 s. Read 17 parameters. Read 1 compartments. Read 5 molecule types. Read 5 species. Read 4 reaction rule(s). Read 4 energy patterns(s). Read 6 observable(s). ACTION: generate_network( catalysis ) Iteration 0: 5 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 2 rxns 1.00e-02 CPU s Iteration 2: 9 species 6 rxns 2.00e-02 CPU s Iteration 3: 10 species 10 rxns 1.00e-02 CPU s Iteration 4: 10 species 12 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 2: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 12 reactions 4.00e-02 CPU s 3.33e-03 CPU s/rxn Wrote network in net format to ./catalysis.net. CPU TIME: generate_network 0.04 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./catalysis.net. Wrote network in net format to ./catalysis.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120 [simulation PID is: 15657] run_network 3.0 Read 30 parameters from ./catalysis.net @C::$ATP() is a fixed (boundaryCondition) variable @C::$ADP() is a fixed (boundaryCondition) variable Read 10 species from ./catalysis.net Read 6 group(s) from ./catalysis.net Read 0 function(s) from ./catalysis.net Read 12 reaction(s) from ./catalysis.net 12 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./catalysis.cdat. Time course of groups written to file ./catalysis.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./catalysis.cdat CPU TIME: simulate 0.04 s. Finished processing file catalysis.bngl. CPU TIME: total 0.12 s. BioNetGen version 2.7.0 Reading from file egfr_net.bngl (level 0) Read 48 parameters. Read 5 molecule types. Read 6 species. Read 23 reaction rule(s). Read 15 observable(s). ACTION: generate_network( egfr_net ) Iteration 0: 6 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 2.00e-02 CPU s Iteration 2: 8 species 5 rxns 1.00e-02 CPU s Iteration 3: 10 species 8 rxns 2.00e-02 CPU s Iteration 4: 19 species 21 rxns 5.00e-02 CPU s Iteration 5: 37 species 76 rxns 2.10e-01 CPU s Iteration 6: 69 species 213 rxns 4.90e-01 CPU s Iteration 7: 131 species 494 rxns 1.12e+00 CPU s Iteration 8: 295 species 1260 rxns 3.50e+00 CPU s Iteration 9: 356 species 3088 rxns 9.11e+00 CPU s Iteration 10: 356 species 3749 rxns 4.20e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 2.20e-01 CPU s 4.58e-03 CPU s/rxn Rule 2: 600 reactions 4.58e+00 CPU s 7.63e-03 CPU s/rxn Rule 3: 144 reactions 5.40e-01 CPU s 3.75e-03 CPU s/rxn Rule 4: 96 reactions 3.40e-01 CPU s 3.54e-03 CPU s/rxn Rule 5: 156 reactions 4.80e-01 CPU s 3.08e-03 CPU s/rxn Rule 6: 104 reactions 2.90e-01 CPU s 2.79e-03 CPU s/rxn Rule 7: 96 reactions 4.20e-01 CPU s 4.37e-03 CPU s/rxn Rule 8: 104 reactions 3.70e-01 CPU s 3.56e-03 CPU s/rxn Rule 9: 312 reactions 1.29e+00 CPU s 4.13e-03 CPU s/rxn Rule 10: 312 reactions 1.37e+00 CPU s 4.39e-03 CPU s/rxn Rule 11: 312 reactions 1.42e+00 CPU s 4.55e-03 CPU s/rxn Rule 12: 208 reactions 8.20e-01 CPU s 3.94e-03 CPU s/rxn Rule 13: 208 reactions 8.40e-01 CPU s 4.04e-03 CPU s/rxn Rule 14: 208 reactions 1.08e+00 CPU s 5.19e-03 CPU s/rxn Rule 15: 208 reactions 1.14e+00 CPU s 5.48e-03 CPU s/rxn Rule 16: 208 reactions 1.00e+00 CPU s 4.81e-03 CPU s/rxn Rule 17: 208 reactions 1.12e+00 CPU s 5.38e-03 CPU s/rxn Rule 18: 208 reactions 1.03e+00 CPU s 4.95e-03 CPU s/rxn Rule 19: 2 reactions 8.00e-02 CPU s 4.00e-02 CPU s/rxn Rule 20: 2 reactions 1.10e-01 CPU s 5.50e-02 CPU s/rxn Rule 21: 1 reactions 2.00e-02 CPU s 2.00e-02 CPU s/rxn Rule 22: 2 reactions 7.00e-02 CPU s 3.50e-02 CPU s/rxn Rule 23: 2 reactions 9.00e-02 CPU s 4.50e-02 CPU s/rxn Total : 3749 reactions 1.87e+01 CPU s 4.99e-03 CPU s/rxn Wrote network in net format to ./egfr_net.net. CPU TIME: generate_network 19.03 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net.net. Wrote network in net format to ./egfr_net.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50 [simulation PID is: 15659] run_network 3.0 Read 48 parameters from ./egfr_net.net Read 356 species from ./egfr_net.net Read 15 group(s) from ./egfr_net.net Read 0 function(s) from ./egfr_net.net Read 3749 reaction(s) from ./egfr_net.net 3749 reaction(s) have nonzero rate Initialization took 0.07 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net.cdat. Time course of groups written to file ./egfr_net.gdat. Propagation took 2.30e-01 CPU seconds Program times: 0.30 CPU s 0.00 clock s Updating species concentrations from ./egfr_net.cdat CPU TIME: simulate 0.60 s. Finished processing file egfr_net.bngl. CPU TIME: total 19.76 s. BioNetGen version 2.7.0 Reading from file egfr_net_red.bngl (level 0) Read 48 parameters. Read 7 molecule types. Read 7 species. Read 14 observable(s). Read 26 reaction rule(s). ACTION: generate_network( egfr_net_red ) Iteration 0: 7 species 0 rxns 0.00e+00 CPU s Iteration 1: 11 species 4 rxns 2.00e-02 CPU s Iteration 2: 13 species 10 rxns 2.00e-02 CPU s Iteration 3: 15 species 14 rxns 2.00e-02 CPU s Iteration 4: 20 species 21 rxns 3.00e-02 CPU s Iteration 5: 26 species 39 rxns 6.00e-02 CPU s Iteration 6: 33 species 62 rxns 6.00e-02 CPU s Iteration 7: 38 species 90 rxns 9.00e-02 CPU s Iteration 8: 40 species 115 rxns 7.00e-02 CPU s Iteration 9: 40 species 123 rxns 3.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 3: 12 reactions 5.00e-02 CPU s 4.17e-03 CPU s/rxn Rule 4: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 5: 12 reactions 4.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 1 reactions 3.00e-02 CPU s 3.00e-02 CPU s/rxn Rule 11: 3 reactions 2.00e-02 CPU s 6.67e-03 CPU s/rxn Rule 12: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 13: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 14: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 15: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 16: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 17: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 18: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 19: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 20: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 21: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 22: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 23: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 24: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 25: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 26: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 123 reactions 4.00e-01 CPU s 3.25e-03 CPU s/rxn Wrote network in net format to ./egfr_net_red.net. CPU TIME: generate_network 0.42 s. Set concentration of species egf(r) to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10 [simulation PID is: 15661] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.05 s. Set concentration of species egf(r) to value egf_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120 [simulation PID is: 15663] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.06 s. Finished processing file egfr_net_red.bngl. CPU TIME: total 0.68 s. BioNetGen version 2.7.0 Reading from file egfr_path.bngl (level 0) Read 48 parameters. Read 18 species. Read 19 reaction rule(s). Read 11 observable(s). ACTION: generate_network( egfr_path ) Iteration 0: 18 species 0 rxns 0.00e+00 CPU s Iteration 1: 18 species 37 rxns 6.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 2: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 5: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 9: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 11: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 15: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 16: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 18: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 37 reactions 6.00e-02 CPU s 1.62e-03 CPU s/rxn Wrote network in net format to ./egfr_path.net. CPU TIME: generate_network 0.08 s. Set concentration of species EGF() to value 0 CPU TIME: setConcentration 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10 [simulation PID is: 15665] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.01 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.03 s. Set concentration of species EGF() to value EGF_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120 [simulation PID is: 15667] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.04 s. Finished processing file egfr_path.bngl. CPU TIME: total 0.25 s. BioNetGen version 2.7.0 Reading from file energy_example1.bngl (level 0) CPU TIME: version 0.00 s. Read 19 parameters. Read 1 compartments. Read 4 molecule types. Read 4 species. Read 6 energy patterns(s). Read 11 observable(s). Read 3 reaction rule(s). ACTION: generate_network( energy_example1 ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 1.00e-02 CPU s Iteration 2: 10 species 12 rxns 3.00e-02 CPU s Iteration 3: 11 species 21 rxns 4.00e-02 CPU s Iteration 4: 11 species 24 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 2: 8 reactions 4.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 3: 8 reactions 3.00e-02 CPU s 3.75e-03 CPU s/rxn Total : 24 reactions 9.00e-02 CPU s 3.75e-03 CPU s/rxn Wrote network in net format to ./energy_example1.net. CPU TIME: generate_network 0.12 s. Wrote SBML to ./energy_example1_sbml.xml. CPU TIME: writeSBML 0.02 s. Finished processing file energy_example1.bngl. CPU TIME: total 0.17 s. BioNetGen version 2.7.0 Reading from file fceri_ji.bngl (level 0) Read 26 parameters. Read 4 species. Adding pY as allowed state of component b of molecule Rec Adding pY as allowed state of component g of molecule Rec Adding pY as allowed state of component l of molecule Syk Adding pY as allowed state of component a of molecule Syk Read 19 reaction rule(s). Read 10 observable(s). ACTION: generate_network( fceri_ji ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 1.00e-02 CPU s Iteration 2: 9 species 8 rxns 2.00e-02 CPU s Iteration 3: 12 species 20 rxns 4.00e-02 CPU s Iteration 4: 22 species 36 rxns 6.00e-02 CPU s Iteration 5: 43 species 100 rxns 1.80e-01 CPU s Iteration 6: 78 species 255 rxns 4.30e-01 CPU s Iteration 7: 139 species 586 rxns 9.60e-01 CPU s Iteration 8: 199 species 1190 rxns 1.90e+00 CPU s Iteration 9: 303 species 1841 rxns 2.37e+00 CPU s Iteration 10: 354 species 3143 rxns 4.12e+00 CPU s Iteration 11: 354 species 3680 rxns 1.78e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 2.60e-01 CPU s 5.42e-03 CPU s/rxn Rule 2: 1152 reactions 3.30e+00 CPU s 2.86e-03 CPU s/rxn Rule 3: 312 reactions 1.01e+00 CPU s 3.24e-03 CPU s/rxn Rule 4: 36 reactions 2.00e-01 CPU s 5.56e-03 CPU s/rxn Rule 5: 24 reactions 1.60e-01 CPU s 6.67e-03 CPU s/rxn Rule 6: 312 reactions 1.00e+00 CPU s 3.21e-03 CPU s/rxn Rule 7: 36 reactions 2.00e-01 CPU s 5.56e-03 CPU s/rxn Rule 8: 24 reactions 1.60e-01 CPU s 6.67e-03 CPU s/rxn Rule 9: 832 reactions 2.49e+00 CPU s 2.99e-03 CPU s/rxn Rule 10: 48 reactions 2.60e-01 CPU s 5.42e-03 CPU s/rxn Rule 11: 48 reactions 2.50e-01 CPU s 5.21e-03 CPU s/rxn Rule 12: 64 reactions 4.10e-01 CPU s 6.41e-03 CPU s/rxn Rule 13: 64 reactions 3.40e-01 CPU s 5.31e-03 CPU s/rxn Rule 14: 156 reactions 3.80e-01 CPU s 2.44e-03 CPU s/rxn Rule 15: 104 reactions 2.30e-01 CPU s 2.21e-03 CPU s/rxn Rule 16: 208 reactions 6.00e-01 CPU s 2.88e-03 CPU s/rxn Rule 17: 208 reactions 5.70e-01 CPU s 2.74e-03 CPU s/rxn Rule 18: 2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 19: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Total : 3680 reactions 1.19e+01 CPU s 3.23e-03 CPU s/rxn Wrote network in net format to ./fceri_ji.net. CPU TIME: generate_network 12.13 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./fceri_ji.net. Wrote network in net format to ./fceri_ji.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10 [simulation PID is: 15669] run_network 3.0 Read 26 parameters from ./fceri_ji.net Read 354 species from ./fceri_ji.net Read 10 group(s) from ./fceri_ji.net Read 0 function(s) from ./fceri_ji.net Read 3680 reaction(s) from ./fceri_ji.net Removed 600 reactions with zero rate 3080 reaction(s) have nonzero rate Initialization took 0.06 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./fceri_ji.cdat. Time course of groups written to file ./fceri_ji.gdat. Propagation took 1.67e+00 CPU seconds Program times: 1.73 CPU s 2.00 clock s Updating species concentrations from ./fceri_ji.cdat CPU TIME: simulate 2.00 s. Finished processing file fceri_ji.bngl. CPU TIME: total 14.23 s. BioNetGen version 2.7.0 Reading from file test_continue.bngl (level 0) Read 19 parameters. Read 5 molecule types. Read 4 species. Read 6 observable(s). Read 6 reaction rule(s). ACTION: generate_network( test_continue ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 0.00e+00 CPU s Iteration 2: 7 species 5 rxns 0.00e+00 CPU s Iteration 3: 8 species 7 rxns 1.00e-02 CPU s Iteration 4: 12 species 12 rxns 2.00e-02 CPU s Iteration 5: 17 species 30 rxns 6.00e-02 CPU s Iteration 6: 22 species 59 rxns 9.00e-02 CPU s Iteration 7: 22 species 76 rxns 7.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 4.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 2: 20 reactions 8.00e-02 CPU s 4.00e-03 CPU s/rxn Rule 3: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 4: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 5: 24 reactions 6.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 6: 14 reactions 3.00e-02 CPU s 2.14e-03 CPU s/rxn Total : 76 reactions 2.50e-01 CPU s 3.29e-03 CPU s/rxn Wrote network in net format to ./test_continue.net. CPU TIME: generate_network 0.27 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 15671] run_network 3.0 Read 19 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.05 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 15673] run_network 3.0 Read 20 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.04 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 15675] run_network 3.0 Read 21 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.04 s. Reset species concentrations to "DEFAULT" saved values. CPU TIME: resetConcentrations 0.00 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./test_continue_ssa -p ssa -h 1790736454 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 15677] run_network 3.0 Read 21 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.01 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 71555 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 3.00e-02 CPU seconds Program times: 0.04 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.07 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./test_continue_ssa -p ssa -h 1001099332 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 15679] run_network 3.0 Read 22 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.01 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 129195 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 5.00e-02 CPU seconds Program times: 0.06 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.10 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/Perl2/BNGAction.pm line 547. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.7.0/bionetgen-BioNetGen-2.7.0/bng2/bin/run_network_aarch64-linux -o ./test_continue_ssa -p ssa -h 2035252456 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 15681] run_network 3.0 Read 23 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.01 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 107411 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 4.00e-02 CPU seconds Program times: 0.05 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.08 s. Finished processing file test_continue.bngl. CPU TIME: total 0.70 s. Tests finished. + echo 'Tests finished.' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bionetgen-2.7.0-2.fc37.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.D33toZ + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.7.0 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.7.0/README.md /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.7.0/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.7.0/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.7.0/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/doc/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.j53Mn8 + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.7.0 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/licenses/bionetgen + cp -pr bionetgen-BioNetGen-2.7.0/LICENSE /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64/usr/share/licenses/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Provides: bionetgen = 2.7.0-2.fc37 bionetgen(aarch-64) = 2.7.0-2.fc37 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.7.0-2.fc37.noarch Provides: bionetgen-perl = 2.7.0-2.fc37 bundled(XML-TreePP) = 0.41 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.7.0-2.fc37.aarch64 Provides: bionetgen-debugsource = 2.7.0-2.fc37 bionetgen-debugsource(aarch-64) = 2.7.0-2.fc37 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.7.0-2.fc37.aarch64 Provides: bionetgen-debuginfo = 2.7.0-2.fc37 bionetgen-debuginfo(aarch-64) = 2.7.0-2.fc37 debuginfo(build-id) = e01d167f1d0f7c0ed019cc530f591c88e2f90f15 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(aarch-64) = 2.7.0-2.fc37 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 Wrote: /builddir/build/RPMS/bionetgen-2.7.0-2.fc37.aarch64.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.7.0-2.fc37.aarch64.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.7.0-2.fc37.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.7.0-2.fc37.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Or7aAb + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.7.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.7.0-2.fc37.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bionetgen-2.7.0-2.fc37.src.rpm Finish: build phase for bionetgen-2.7.0-2.fc37.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1650942749.139944/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.7.0-2.fc37.src.rpm) Config(child) 3 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool