Warning: Permanently added '54.243.17.181' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6579031-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.69 PID: 6043 Logging PID: 6044 Task: {'appstream': False, 'background': False, 'build_id': 6579031, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7114bc3e588be3a27c43fd56ccd7a39240066ac6', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/orion/pmix-4.2/bout++', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bout++', 'package_version': '5.1.0-2', 'project_dirname': 'pmix-4.2', 'project_name': 'pmix-4.2', 'project_owner': 'orion', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/orion/pmix-4.2/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'orion/pmix-4.2--davidsch', 'source_json': {}, 'source_type': None, 'submitter': 'davidsch', 'tags': [], 'task_id': '6579031-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/orion/pmix-4.2/bout++ /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++ --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/orion/pmix-4.2/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++'... Running: git checkout 7114bc3e588be3a27c43fd56ccd7a39240066ac6 -- cmd: ['git', 'checkout', '7114bc3e588be3a27c43fd56ccd7a39240066ac6', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++ rc: 0 stdout: stderr: Note: switching to '7114bc3e588be3a27c43fd56ccd7a39240066ac6'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7114bc3 automatic import of bout++ Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++ rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BOUT++-v5.1.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o BOUT++-v5.1.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/orion/pmix-4.2/bout++/BOUT++-v5.1.0.tar.gz/md5/55d4dc965cba0ef23b1bb529b9c84827/BOUT++-v5.1.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 18.0M 100 18.0M 0 0 146M 0 --:--:-- --:--:-- --:--:-- 147M INFO: Reading stdout from command: md5sum BOUT++-v5.1.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1698603421.428792 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1698603421.428792 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++/bout++.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1698603421.428792/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1698603421.428792/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d9885dcdd5873befcec0793a632fa5229e32b23da3f37c83b37dcaf12d798d2b/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d9885dcdd5873befcec0793a632fa5229e32b23da3f37c83b37dcaf12d798d2b/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 30 MB/s | 2.5 MB 00:00 fedora 54 MB/s | 70 MB 00:01 Package python3-dnf-4.18.0-1.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.3-1.fc40 fedora 317 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus aarch64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd aarch64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.2 M Installed size: 4.7 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm 8.0 MB/s | 156 kB 00:00 (2/7): python3-distro-1.8.0-6.fc39.noarch.rpm 14 MB/s | 49 kB 00:00 (3/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 15 MB/s | 355 kB 00:00 (4/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm 6.2 MB/s | 157 kB 00:00 (5/7): python3-dnf-plugins-core-4.4.3-1.fc40.no 64 MB/s | 317 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 9.2 MB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.aarch64.rpm 27 MB/s | 107 kB 00:00 -------------------------------------------------------------------------------- Total 3.6 MB/s | 1.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.aarch64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 5/7 Installing : python3-dbus-1.3.2-4.fc39.aarch64 6/7 Installing : python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 42 MB/s | 2.5 MB 00:00 fedora 51 MB/s | 70 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash aarch64 5.2.15-5.fc39 fedora 1.8 M bzip2 aarch64 1.0.8-16.fc39 fedora 52 k coreutils aarch64 9.4-1.fc40 fedora 1.2 M cpio aarch64 2.14-4.fc39 fedora 277 k diffutils aarch64 3.10-3.fc39 fedora 396 k fedora-release-common noarch 40-0.14 fedora 19 k findutils aarch64 1:4.9.0-6.fc40 fedora 495 k gawk aarch64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack aarch64 2.38.9000-16.fc40 fedora 78 k grep aarch64 3.11-5.fc40 fedora 296 k gzip aarch64 1.12-6.fc39 fedora 164 k info aarch64 7.1-1.fc40 fedora 183 k patch aarch64 2.7.6-22.fc39 fedora 123 k redhat-rpm-config noarch 269-1.fc40 fedora 81 k rpm-build aarch64 4.19.0-1.fc40 fedora 79 k sed aarch64 4.8-14.fc39 fedora 304 k shadow-utils aarch64 2:4.14.0-2.fc40 fedora 1.3 M tar aarch64 2:1.35-2.fc40 fedora 854 k unzip aarch64 6.0-62.fc39 fedora 183 k util-linux aarch64 2.39.2-1.fc40 fedora 1.2 M which aarch64 2.21-40.fc39 fedora 42 k xz aarch64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives aarch64 1.25-1.fc39 fedora 38 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs aarch64 3.1.2-4.fc40 fedora 118 k authselect aarch64 1.4.3-1.fc40 fedora 149 k authselect-libs aarch64 1.4.3-1.fc40 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils aarch64 2.41-8.fc40 fedora 6.7 M binutils-gold aarch64 2.41-8.fc40 fedora 944 k bzip2-libs aarch64 1.0.8-16.fc39 fedora 43 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k coreutils-common aarch64 9.4-1.fc40 fedora 2.1 M cracklib aarch64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20230920-1.git570ea89.fc40 fedora 99 k curl aarch64 8.4.0-1.fc40 fedora 358 k cyrus-sasl-lib aarch64 2.1.28-11.fc39 fedora 781 k debugedit aarch64 5.0-10.fc39 fedora 77 k dwz aarch64 0.15-3.fc39 fedora 136 k ed aarch64 1.19-4.fc39 fedora 78 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils aarch64 0.189-6.fc40 fedora 539 k elfutils-debuginfod-client aarch64 0.189-6.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf aarch64 0.189-6.fc40 fedora 194 k elfutils-libs aarch64 0.189-6.fc40 fedora 258 k fedora-gpg-keys noarch 40-0.2 fedora 130 k fedora-release noarch 40-0.14 fedora 8.8 k fedora-release-identity-basic noarch 40-0.14 fedora 9.6 k fedora-repos noarch 40-0.2 fedora 9.3 k fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k file aarch64 5.45-1.fc40 fedora 49 k file-libs aarch64 5.45-1.fc40 fedora 761 k filesystem aarch64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal aarch64 13.2-11.fc40 fedora 3.8 M gdbm aarch64 1:1.23-4.fc39 fedora 153 k gdbm-libs aarch64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc aarch64 2.38.9000-16.fc40 fedora 1.7 M glibc-common aarch64 2.38.9000-16.fc40 fedora 356 k glibc-gconv-extra aarch64 2.38.9000-16.fc40 fedora 2.0 M gmp aarch64 1:6.2.1-5.fc39 fedora 266 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.0-1.fc40 fedora 28 k jansson aarch64 2.13.1-7.fc39 fedora 46 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs aarch64 1.6.1-7.fc39 fedora 31 k krb5-libs aarch64 1.21.2-2.fc40 fedora 769 k libacl aarch64 2.3.1-10.fc40 fedora 24 k libarchive aarch64 3.7.2-1.fc40 fedora 402 k libattr aarch64 2.5.1-9.fc40 fedora 18 k libblkid aarch64 2.39.2-1.fc40 fedora 115 k libbrotli aarch64 1.1.0-1.fc40 fedora 344 k libcap aarch64 2.48-7.fc39 fedora 68 k libcap-ng aarch64 0.8.3-8.fc40 fedora 32 k libcom_err aarch64 1.47.0-2.fc39 fedora 26 k libcurl aarch64 8.4.0-1.fc40 fedora 336 k libdb-convert-util aarch64 5.3.28-58.fc40 fedora 683 k libeconf aarch64 0.5.2-1.fc40 fedora 30 k libevent aarch64 2.1.12-9.fc39 fedora 254 k libfdisk aarch64 2.39.2-1.fc40 fedora 158 k libffi aarch64 3.4.4-4.fc39 fedora 38 k libgcc aarch64 13.2.1-4.fc40 fedora 95 k libgomp aarch64 13.2.1-4.fc40 fedora 312 k libidn2 aarch64 2.3.4-3.fc39 fedora 118 k libmount aarch64 2.39.2-1.fc40 fedora 153 k libnghttp2 aarch64 1.57.0-2.fc40 fedora 76 k libnsl2 aarch64 2.0.0-6.fc39 fedora 30 k libpkgconf aarch64 1.9.5-2.fc39 fedora 38 k libpsl aarch64 0.21.2-4.fc39 fedora 63 k libpwquality aarch64 1.4.5-6.fc39 fedora 120 k libselinux aarch64 3.5-5.fc39 fedora 86 k libsemanage aarch64 3.5-4.fc39 fedora 117 k libsepol aarch64 3.5-2.fc39 fedora 311 k libsigsegv aarch64 2.14-5.fc39 fedora 27 k libsmartcols aarch64 2.39.2-1.fc40 fedora 65 k libssh aarch64 0.10.5-2.fc39 fedora 212 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ aarch64 13.2.1-4.fc40 fedora 812 k libtasn1 aarch64 4.19.0-3.fc39 fedora 73 k libtirpc aarch64 1.3.4-0.fc40 fedora 95 k libunistring aarch64 1.1-5.fc40 fedora 540 k libutempter aarch64 1.2.1-10.fc39 fedora 27 k libuuid aarch64 2.39.2-1.fc40 fedora 28 k libverto aarch64 0.3.2-6.fc39 fedora 21 k libxcrypt aarch64 4.4.36-2.fc39 fedora 123 k libxml2 aarch64 2.11.5-1.fc40 fedora 687 k libzstd aarch64 1.5.5-4.fc39 fedora 280 k lmdb-libs aarch64 0.9.31-2.fc39 fedora 60 k lua-libs aarch64 5.4.6-3.fc39 fedora 131 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs aarch64 1.9.4-4.fc39 fedora 68 k mpfr aarch64 4.2.1-1.fc40 fedora 320 k ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k ncurses-libs aarch64 6.4-8.20231001.fc40 fedora 328 k ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap aarch64 2.6.6-1.fc39 fedora 251 k openssl-libs aarch64 1:3.1.4-1.fc40 fedora 2.0 M p11-kit aarch64 0.25.1-1.fc40 fedora 495 k p11-kit-trust aarch64 0.25.1-1.fc40 fedora 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam aarch64 1.5.3-4.fc40 fedora 557 k pam-libs aarch64 1.5.3-4.fc40 fedora 57 k pcre2 aarch64 10.42-1.fc39.2 fedora 219 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf aarch64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config aarch64 1.9.5-2.fc39 fedora 9.6 k popt aarch64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc40 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc40 fedora 8.7 k readline aarch64 8.2-4.fc39 fedora 211 k rpm aarch64 4.19.0-1.fc40 fedora 537 k rpm-build-libs aarch64 4.19.0-1.fc40 fedora 92 k rpm-libs aarch64 4.19.0-1.fc40 fedora 306 k rpm-sequoia aarch64 1.5.0-1.fc40 fedora 842 k rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs aarch64 3.43.2-1.fc40 fedora 679 k systemd-libs aarch64 254.5-2.fc40 fedora 667 k util-linux-core aarch64 2.39.2-1.fc40 fedora 490 k xxhash-libs aarch64 0.8.2-1.fc39 fedora 35 k xz-libs aarch64 5.4.4-1.fc39 fedora 106 k zip aarch64 3.0-39.fc40 fedora 262 k zlib aarch64 1.2.13-5.fc40 fedora 93 k zstd aarch64 1.5.5-4.fc39 fedora 446 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 53 M Installed size: 304 M Downloading Packages: (1/154): alternatives-1.25-1.fc39.aarch64.rpm 2.0 MB/s | 38 kB 00:00 (2/154): ansible-srpm-macros-1-11.fc39.noarch.r 1.1 MB/s | 21 kB 00:00 (3/154): audit-libs-3.1.2-4.fc40.aarch64.rpm 5.4 MB/s | 118 kB 00:00 (4/154): authselect-1.4.3-1.fc40.aarch64.rpm 37 MB/s | 149 kB 00:00 (5/154): authselect-libs-1.4.3-1.fc40.aarch64.r 60 MB/s | 249 kB 00:00 (6/154): basesystem-11-18.fc39.noarch.rpm 4.3 MB/s | 7.2 kB 00:00 (7/154): binutils-gold-2.41-8.fc40.aarch64.rpm 113 MB/s | 944 kB 00:00 (8/154): bash-5.2.15-5.fc39.aarch64.rpm 102 MB/s | 1.8 MB 00:00 (9/154): binutils-2.41-8.fc40.aarch64.rpm 268 MB/s | 6.7 MB 00:00 (10/154): bzip2-1.0.8-16.fc39.aarch64.rpm 3.3 MB/s | 52 kB 00:00 (11/154): bzip2-libs-1.0.8-16.fc39.aarch64.rpm 5.7 MB/s | 43 kB 00:00 (12/154): ca-certificates-2023.2.62_v7.0.401-4. 168 MB/s | 863 kB 00:00 (13/154): coreutils-9.4-1.fc40.aarch64.rpm 124 MB/s | 1.2 MB 00:00 (14/154): coreutils-common-9.4-1.fc40.aarch64.r 177 MB/s | 2.1 MB 00:00 (15/154): cpio-2.14-4.fc39.aarch64.rpm 51 MB/s | 277 kB 00:00 (16/154): cracklib-2.9.11-2.fc39.aarch64.rpm 28 MB/s | 94 kB 00:00 (17/154): crypto-policies-20230920-1.git570ea89 55 MB/s | 99 kB 00:00 (18/154): curl-8.4.0-1.fc40.aarch64.rpm 119 MB/s | 358 kB 00:00 (19/154): cyrus-sasl-lib-2.1.28-11.fc39.aarch64 164 MB/s | 781 kB 00:00 (20/154): diffutils-3.10-3.fc39.aarch64.rpm 145 MB/s | 396 kB 00:00 (21/154): debugedit-5.0-10.fc39.aarch64.rpm 15 MB/s | 77 kB 00:00 (22/154): dwz-0.15-3.fc39.aarch64.rpm 46 MB/s | 136 kB 00:00 (23/154): ed-1.19-4.fc39.aarch64.rpm 48 MB/s | 78 kB 00:00 (24/154): elfutils-0.189-6.fc40.aarch64.rpm 194 MB/s | 539 kB 00:00 (25/154): efi-srpm-macros-5-9.fc39.noarch.rpm 5.8 MB/s | 22 kB 00:00 (26/154): elfutils-debuginfod-client-0.189-6.fc 13 MB/s | 38 kB 00:00 (27/154): elfutils-default-yama-scope-0.189-6.f 8.2 MB/s | 13 kB 00:00 (28/154): elfutils-libelf-0.189-6.fc40.aarch64. 98 MB/s | 194 kB 00:00 (29/154): elfutils-libs-0.189-6.fc40.aarch64.rp 90 MB/s | 258 kB 00:00 (30/154): fedora-gpg-keys-40-0.2.noarch.rpm 54 MB/s | 130 kB 00:00 (31/154): fedora-release-40-0.14.noarch.rpm 6.0 MB/s | 8.8 kB 00:00 (32/154): fedora-release-common-40-0.14.noarch. 12 MB/s | 19 kB 00:00 (33/154): fedora-release-identity-basic-40-0.14 4.1 MB/s | 9.6 kB 00:00 (34/154): fedora-repos-40-0.2.noarch.rpm 3.2 MB/s | 9.3 kB 00:00 (35/154): fedora-repos-rawhide-40-0.2.noarch.rp 4.2 MB/s | 8.9 kB 00:00 (36/154): file-5.45-1.fc40.aarch64.rpm 33 MB/s | 49 kB 00:00 (37/154): file-libs-5.45-1.fc40.aarch64.rpm 165 MB/s | 761 kB 00:00 (38/154): filesystem-3.18-6.fc39.aarch64.rpm 195 MB/s | 1.1 MB 00:00 (39/154): findutils-4.9.0-6.fc40.aarch64.rpm 73 MB/s | 495 kB 00:00 (40/154): fonts-srpm-macros-2.0.5-12.fc39.noarc 10 MB/s | 26 kB 00:00 (41/154): forge-srpm-macros-0.1.0-1.fc40.noarch 5.6 MB/s | 18 kB 00:00 (42/154): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 2.6 MB/s | 7.4 kB 00:00 (43/154): gawk-5.2.2-2.fc39.aarch64.rpm 284 MB/s | 1.1 MB 00:00 (44/154): gdbm-1.23-4.fc39.aarch64.rpm 41 MB/s | 153 kB 00:00 (45/154): gdbm-libs-1.23-4.fc39.aarch64.rpm 26 MB/s | 56 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(0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.aarch64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-4.fc40.aarch64 1/154 Running scriptlet: libgcc-13.2.1-4.fc40.aarch64 1/154 Installing : crypto-policies-20230920-1.git570ea89.fc40.noarc 2/154 Running scriptlet: crypto-policies-20230920-1.git570ea89.fc40.noarc 2/154 Installing : fedora-release-identity-basic-40-0.14.noarch 3/154 Installing : fedora-repos-rawhide-40-0.2.noarch 4/154 Installing : fedora-gpg-keys-40-0.2.noarch 5/154 Installing : fedora-repos-40-0.2.noarch 6/154 Installing : fedora-release-common-40-0.14.noarch 7/154 Installing : fedora-release-40-0.14.noarch 8/154 Installing : setup-2.14.4-1.fc39.noarch 9/154 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 9/154 Installing : filesystem-3.18-6.fc39.aarch64 10/154 Installing : basesystem-11-18.fc39.noarch 11/154 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/154 Installing : 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65/154 Installing : libselinux-3.5-5.fc39.aarch64 66/154 Installing : sed-4.8-14.fc39.aarch64 67/154 Installing : grep-3.11-5.fc40.aarch64 68/154 Installing : findutils-1:4.9.0-6.fc40.aarch64 69/154 Installing : xz-5.4.4-1.fc39.aarch64 70/154 Installing : libmount-2.39.2-1.fc40.aarch64 71/154 Installing : util-linux-core-2.39.2-1.fc40.aarch64 72/154 Installing : libsemanage-3.5-4.fc39.aarch64 73/154 Installing : shadow-utils-2:4.14.0-2.fc40.aarch64 74/154 Running scriptlet: libutempter-1.2.1-10.fc39.aarch64 75/154 Installing : libutempter-1.2.1-10.fc39.aarch64 75/154 Installing : tar-2:1.35-2.fc40.aarch64 76/154 Installing : libpsl-0.21.2-4.fc39.aarch64 77/154 Installing : zip-3.0-39.fc40.aarch64 78/154 Installing : zstd-1.5.5-4.fc39.aarch64 79/154 Installing : cyrus-sasl-lib-2.1.28-11.fc39.aarch64 80/154 Installing : gdbm-1:1.23-4.fc39.aarch64 81/154 Installing : libfdisk-2.39.2-1.fc40.aarch64 82/154 Installing : bzip2-1.0.8-16.fc39.aarch64 83/154 Installing : libxml2-2.11.5-1.fc40.aarch64 84/154 Installing : sqlite-libs-3.43.2-1.fc40.aarch64 85/154 Installing : ed-1.19-4.fc39.aarch64 86/154 Installing : patch-2.7.6-22.fc39.aarch64 87/154 Installing : elfutils-default-yama-scope-0.189-6.fc40.noarch 88/154 Running scriptlet: elfutils-default-yama-scope-0.189-6.fc40.noarch 88/154 Installing : cpio-2.14-4.fc39.aarch64 89/154 Installing : diffutils-3.10-3.fc39.aarch64 90/154 Installing : keyutils-libs-1.6.1-7.fc39.aarch64 91/154 Installing : libbrotli-1.1.0-1.fc40.aarch64 92/154 Installing : libffi-3.4.4-4.fc39.aarch64 93/154 Installing : p11-kit-0.25.1-1.fc40.aarch64 94/154 Installing : p11-kit-trust-0.25.1-1.fc40.aarch64 95/154 Running scriptlet: p11-kit-trust-0.25.1-1.fc40.aarch64 95/154 Installing : libgomp-13.2.1-4.fc40.aarch64 96/154 Installing : libnghttp2-1.57.0-2.fc40.aarch64 97/154 Installing : libpkgconf-1.9.5-2.fc39.aarch64 98/154 Installing : pkgconf-1.9.5-2.fc39.aarch64 99/154 Installing : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 100/154 Installing : libsigsegv-2.14-5.fc39.aarch64 101/154 Installing : gawk-5.2.2-2.fc39.aarch64 102/154 Installing : libverto-0.3.2-6.fc39.aarch64 103/154 Installing : lmdb-libs-0.9.31-2.fc39.aarch64 104/154 Installing : libdb-convert-util-5.3.28-58.fc40.aarch64 105/154 Installing : xxhash-libs-0.8.2-1.fc39.aarch64 106/154 Installing : libssh-config-0.10.5-2.fc39.noarch 107/154 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 108/154 Installing : gnat-srpm-macros-6-3.fc39.noarch 109/154 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 110/154 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 111/154 Installing : coreutils-common-9.4-1.fc40.aarch64 112/154 Installing : openssl-libs-1:3.1.4-1.fc40.aarch64 113/154 Installing : coreutils-9.4-1.fc40.aarch64 114/154 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 115/154 Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 115/154 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 115/154 Installing : krb5-libs-1.21.2-2.fc40.aarch64 116/154 Installing : libtirpc-1.3.4-0.fc40.aarch64 117/154 Running scriptlet: authselect-libs-1.4.3-1.fc40.aarch64 118/154 Installing : authselect-libs-1.4.3-1.fc40.aarch64 118/154 Installing : gzip-1.12-6.fc39.aarch64 119/154 Installing : cracklib-2.9.11-2.fc39.aarch64 120/154 Installing : libpwquality-1.4.5-6.fc39.aarch64 121/154 Installing : authselect-1.4.3-1.fc40.aarch64 122/154 Installing : libnsl2-2.0.0-6.fc39.aarch64 123/154 Installing : pam-1.5.3-4.fc40.aarch64 124/154 Installing : libssh-0.10.5-2.fc39.aarch64 125/154 Installing : libarchive-3.7.2-1.fc40.aarch64 126/154 Installing : libevent-2.1.12-9.fc39.aarch64 127/154 Installing : openldap-2.6.6-1.fc39.aarch64 128/154 Installing : libcurl-8.4.0-1.fc40.aarch64 129/154 Installing : elfutils-libs-0.189-6.fc40.aarch64 130/154 Installing : elfutils-debuginfod-client-0.189-6.fc40.aarch64 131/154 Installing : binutils-gold-2.41-8.fc40.aarch64 132/154 Running scriptlet: binutils-gold-2.41-8.fc40.aarch64 132/154 Installing : binutils-2.41-8.fc40.aarch64 133/154 Running scriptlet: binutils-2.41-8.fc40.aarch64 133/154 Installing : elfutils-0.189-6.fc40.aarch64 134/154 Installing : gdb-minimal-13.2-11.fc40.aarch64 135/154 Installing : debugedit-5.0-10.fc39.aarch64 136/154 Installing : curl-8.4.0-1.fc40.aarch64 137/154 Installing : rpm-sequoia-1.5.0-1.fc40.aarch64 138/154 Installing : rpm-libs-4.19.0-1.fc40.aarch64 139/154 Running scriptlet: rpm-4.19.0-1.fc40.aarch64 140/154 Installing : rpm-4.19.0-1.fc40.aarch64 140/154 Installing : efi-srpm-macros-5-9.fc39.noarch 141/154 Installing : lua-srpm-macros-1-9.fc39.noarch 142/154 Installing : rpm-build-libs-4.19.0-1.fc40.aarch64 143/154 Installing : ansible-srpm-macros-1-11.fc39.noarch 144/154 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/154 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 146/154 Installing : go-srpm-macros-3.3.0-1.fc40.noarch 147/154 Installing : python-srpm-macros-3.12-4.fc40.noarch 148/154 Installing : redhat-rpm-config-269-1.fc40.noarch 149/154 Installing : rpm-build-4.19.0-1.fc40.aarch64 150/154 Installing : pyproject-srpm-macros-1.10.0-1.fc40.noarch 151/154 Installing : util-linux-2.39.2-1.fc40.aarch64 152/154 Installing : which-2.21-40.fc39.aarch64 153/154 Installing : info-7.1-1.fc40.aarch64 154/154 Running scriptlet: filesystem-3.18-6.fc39.aarch64 154/154 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 154/154 Running scriptlet: authselect-libs-1.4.3-1.fc40.aarch64 154/154 Running scriptlet: rpm-4.19.0-1.fc40.aarch64 154/154 Running scriptlet: info-7.1-1.fc40.aarch64 154/154 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.3-1.fc40.aarch64 authselect-libs-1.4.3-1.fc40.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-8.fc40.aarch64 binutils-gold-2.41-8.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20230920-1.git570ea89.fc40.noarch curl-8.4.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.14.noarch fedora-release-common-40-0.14.noarch fedora-release-identity-basic-40-0.14.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-11.fc40.aarch64 gdbm-1:1.23-4.fc39.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-16.fc40.aarch64 glibc-common-2.38.9000-16.fc40.aarch64 glibc-gconv-extra-2.38.9000-16.fc40.aarch64 glibc-minimal-langpack-2.38.9000-16.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.0-1.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.1-1.fc40.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-2.fc40.aarch64 libacl-2.3.1-10.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.4.0-1.fc40.aarch64 libdb-convert-util-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-4.fc40.aarch64 libgomp-13.2.1-4.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.57.0-2.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc39.aarch64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-4.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.4-0.fc40.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lmdb-libs-0.9.31-2.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.1-1.fc40.aarch64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.aarch64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.4-1.fc40.aarch64 p11-kit-0.25.1-1.fc40.aarch64 p11-kit-trust-0.25.1-1.fc40.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-4.fc40.aarch64 pam-libs-1.5.3-4.fc40.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.0-1.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-269-1.fc40.noarch rpm-4.19.0-1.fc40.aarch64 rpm-build-4.19.0-1.fc40.aarch64 rpm-build-libs-4.19.0-1.fc40.aarch64 rpm-libs-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc40.aarch64 sqlite-libs-3.43.2-1.fc40.aarch64 systemd-libs-254.5-2.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-1.2.13-5.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.3-1.fc40.aarch64 authselect-libs-1.4.3-1.fc40.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-8.fc40.aarch64 binutils-gold-2.41-8.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20230920-1.git570ea89.fc40.noarch curl-8.4.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.14.noarch fedora-release-common-40-0.14.noarch fedora-release-identity-basic-40-0.14.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-11.fc40.aarch64 gdbm-1.23-4.fc39.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-16.fc40.aarch64 glibc-common-2.38.9000-16.fc40.aarch64 glibc-gconv-extra-2.38.9000-16.fc40.aarch64 glibc-minimal-langpack-2.38.9000-16.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.0-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.1-1.fc40.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-2.fc40.aarch64 libacl-2.3.1-10.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.4.0-1.fc40.aarch64 libdb-convert-util-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-4.fc40.aarch64 libgomp-13.2.1-4.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.57.0-2.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc39.aarch64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-4.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.4-0.fc40.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lmdb-libs-0.9.31-2.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.1-1.fc40.aarch64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.aarch64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.4-1.fc40.aarch64 p11-kit-0.25.1-1.fc40.aarch64 p11-kit-trust-0.25.1-1.fc40.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-4.fc40.aarch64 pam-libs-1.5.3-4.fc40.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.0-1.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-269-1.fc40.noarch rpm-4.19.0-1.fc40.aarch64 rpm-build-4.19.0-1.fc40.aarch64 rpm-build-libs-4.19.0-1.fc40.aarch64 rpm-libs-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc40.aarch64 sqlite-libs-3.43.2-1.fc40.aarch64 systemd-libs-254.5-2.fc40.aarch64 tar-1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-1.2.13-5.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1698537600 Wrote: /builddir/build/SRPMS/bout++-5.1.0-2.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-r4dk10nm/bout++/bout++.spec) Config(child) 1 minutes 2 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/bout++-5.1.0-2.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1698603421.428792/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1698603421.428792/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 python3-dnf-4.18.0-1.fc40.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch yum-4.18.0-1.fc40.noarch Start: build phase for bout++-5.1.0-2.fc40.src.rpm Start: build setup for bout++-5.1.0-2.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1698537600 Wrote: /builddir/build/SRPMS/bout++-5.1.0-2.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 80 kB/s | 1.8 kB 00:00 fedora 82 kB/s | 9.5 kB 00:00 Dependencies resolved. ============================================================================================= Package Arch Version Repo Size ============================================================================================= Installing: chrpath aarch64 0.16-21.fc39 fedora 30 k cmake aarch64 3.27.7-1.fc40 fedora 7.4 M doxygen aarch64 2:1.9.8-1.fc40 fedora 5.2 M environment-modules aarch64 5.3.1-2.fc39 fedora 703 k fftw-devel aarch64 3.3.10-9.fc40 copr_base 129 k flexiblas-devel aarch64 3.3.1-5.fc39 fedora 116 k fmt-devel aarch64 10.0.0-3.fc39 fedora 128 k gcc-c++ aarch64 13.2.1-4.fc40 fedora 12 M gettext-devel aarch64 0.22-2.fc39 fedora 235 k hdf5-devel aarch64 1.12.1-12.fc39 fedora 1.3 M hdf5-mpich-devel aarch64 1.12.1-12.fc39 fedora 1.3 M hdf5-openmpi-devel aarch64 1.12.1-12.fc39 fedora 1.3 M m4 aarch64 1.4.19-7.fc40 fedora 299 k make aarch64 1:4.4.1-2.fc39 fedora 585 k mpark-variant-devel aarch64 1.4.0-10.fc39 fedora 27 k mpich-devel aarch64 4.1.2-7.fc40 fedora 1.4 M netcdf-cxx4-devel aarch64 4.3.1-9.fc40 copr_base 57 k netcdf-devel aarch64 4.9.0-5.fc38 fedora 99 k openmpi-devel aarch64 5.0.0-1.fc40 copr_base 2.1 M petsc-mpich-devel aarch64 3.20.0-1.fc40 copr_base 4.5 M petsc-openmpi-devel aarch64 3.20.0-1.fc40 copr_base 7.0 M python3 aarch64 3.12.0-2.fc40 fedora 27 k python3-boutdata noarch 0.1.10-4.fc39 fedora 187 k python3-boututils noarch 0.1.10-4.fc39 fedora 167 k python3-cython aarch64 3.0.2-1.fc40 fedora 3.7 M python3-devel aarch64 3.12.0-2.fc40 fedora 311 k python3-jinja2 noarch 3.1.2-6.fc40 fedora 505 k python3-netcdf4 aarch64 1.6.5-1.fc40 fedora 581 k python3-numpy aarch64 1:1.26.0-1.fc40 fedora 6.6 M python3-scipy aarch64 1.11.1-1.fc39 fedora 15 M python3-sphinx noarch 1:7.1.2-2.fc40 fedora 2.6 M python3-tables aarch64 3.8.0-6.fc40 fedora 1.6 M python3-zoidberg noarch 0.1.1-3.fc39 fedora 122 k sundials-devel aarch64 6.6.1-3.fc40 copr_base 909 k sundials-mpich-devel aarch64 6.6.1-3.fc40 copr_base 954 k sundials-openmpi-devel aarch64 6.6.1-3.fc40 copr_base 953 k zlib-devel aarch64 1.2.13-5.fc40 fedora 45 k Installing dependencies: MUMPS-common noarch 5.5.1-6.fc40 copr_base 831 k MUMPS-mpich aarch64 5.5.1-6.fc40 copr_base 1.8 M MUMPS-openmpi aarch64 5.5.1-6.fc40 copr_base 1.8 M SuperLUMT-common noarch 3.1.0-36.fc39 fedora 642 k SuperLUMT64-double aarch64 3.1.0-36.fc39 fedora 78 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k adobe-mappings-cmap noarch 20230622-1.fc39 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-1.fc39 fedora 113 k adobe-mappings-pdf noarch 20190401-5.fc39 fedora 698 k annobin-docs noarch 12.28-1.fc40 fedora 94 k annobin-plugin-gcc aarch64 12.28-1.fc40 fedora 959 k avahi-libs aarch64 0.8-24.fc39 fedora 67 k blosc aarch64 1.21.4-2.fc39 fedora 48 k blosc2 aarch64 2.10.5-2.fc40 fedora 184 k cairo aarch64 1.18.0-1.fc40 fedora 692 k cairo-gobject aarch64 1.18.0-1.fc40 fedora 18 k clang-libs aarch64 17.0.3-1.fc40 fedora 21 M clang-resource-filesystem noarch 17.0.3-1.fc40 fedora 14 k cmake-data noarch 3.27.7-1.fc40 fedora 2.2 M cmake-filesystem aarch64 3.27.7-1.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.7-1.fc40 fedora 19 k cpp aarch64 13.2.1-4.fc40 fedora 9.7 M crypto-policies-scripts noarch 20230920-1.git570ea89.fc40 fedora 115 k cups-libs aarch64 1:2.4.7-1.fc40 fedora 268 k dbus aarch64 1:1.14.10-1.fc40 fedora 8.1 k dbus-broker aarch64 33-2.fc39 fedora 169 k dbus-common noarch 1:1.14.10-1.fc40 fedora 15 k dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k dejavu-sans-fonts noarch 2.37-21.fc40 fedora 1.3 M emacs-filesystem noarch 1:29.1-12.fc40 fedora 7.2 k expat aarch64 2.5.0-3.fc39 fedora 108 k fftw aarch64 3.3.10-9.fc40 copr_base 40 k fftw-libs aarch64 3.3.10-9.fc40 copr_base 8.3 k fftw-libs-double aarch64 3.3.10-9.fc40 copr_base 836 k fftw-libs-long aarch64 3.3.10-9.fc40 copr_base 784 k fftw-libs-single aarch64 3.3.10-9.fc40 copr_base 882 k flexiblas aarch64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib aarch64 3.3.1-5.fc39 fedora 2.6 M flexiblas-netlib64 aarch64 3.3.1-5.fc39 fedora 2.5 M flexiblas-openblas-openmp aarch64 3.3.1-5.fc39 fedora 16 k flexiblas-openblas-openmp64 aarch64 3.3.1-5.fc39 fedora 16 k fmt aarch64 10.0.0-3.fc39 fedora 123 k fontconfig aarch64 2.14.2-5.fc40 fedora 301 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype aarch64 2.13.1-2.fc39 fedora 406 k fribidi aarch64 1.0.13-2.fc39 fedora 91 k gc aarch64 8.2.2-4.fc39 fedora 110 k gcc aarch64 13.2.1-4.fc40 fedora 31 M gcc-gfortran aarch64 13.2.1-4.fc40 fedora 11 M gcc-plugin-annobin aarch64 13.2.1-4.fc40 fedora 48 k gd aarch64 2.3.3-12.fc39 fedora 133 k gdk-pixbuf2 aarch64 2.42.10-5.fc39 fedora 482 k gettext aarch64 0.22-2.fc39 fedora 1.1 M gettext-common-devel noarch 0.22-2.fc39 fedora 410 k gettext-envsubst aarch64 0.22-2.fc39 fedora 36 k gettext-libs aarch64 0.22-2.fc39 fedora 310 k gettext-runtime aarch64 0.22-2.fc39 fedora 119 k glib2 aarch64 2.78.1-1.fc40 fedora 2.8 M glibc-devel aarch64 2.38.9000-16.fc40 fedora 587 k gnutls aarch64 3.8.1-1.fc40 fedora 1.0 M google-droid-sans-fonts noarch 20200215-17.fc40 fedora 2.7 M google-noto-fonts-common noarch 20230801-3.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-3.fc40 fedora 583 k graphite2 aarch64 1.3.14-12.fc39 fedora 93 k graphviz aarch64 9.0.0-2.fc40 fedora 4.9 M groff-base aarch64 1.23.0-2.fc39 fedora 1.1 M gts aarch64 0.7.6-46.20121130.fc39 fedora 234 k guile22 aarch64 2.2.7-9.fc39 fedora 6.5 M harfbuzz aarch64 8.2.1-2.fc40 fedora 934 k hdf-libs aarch64 4.2.15-14.fc40 fedora 279 k hdf5 aarch64 1.12.1-12.fc39 fedora 2.1 M hdf5-mpich aarch64 1.12.1-12.fc39 fedora 2.0 M hdf5-openmpi aarch64 1.12.1-12.fc39 fedora 2.0 M highway aarch64 1.0.7-1.fc40 fedora 98 k hwloc-libs aarch64 2.9.3-1.fc40 fedora 2.3 M hypre-mpich aarch64 2.24.0-8.fc40 copr_base 1.6 M hypre-openmpi aarch64 2.24.0-8.fc40 copr_base 1.6 M jbig2dec-libs aarch64 0.19-10.fc39 fedora 71 k jbigkit-libs aarch64 2.1-26.fc39 fedora 53 k jsoncpp aarch64 1.9.5-5.fc39 fedora 91 k kernel-headers aarch64 6.6.0-0.rc6.git0.1.fc40 fedora 1.5 M kmod-libs aarch64 30-6.fc39 fedora 67 k lasi aarch64 1.1.3-11.fc39 fedora 53 k lcms2 aarch64 2.15-2.fc39 fedora 176 k less aarch64 643-1.fc40 fedora 177 k libICE aarch64 1.1.1-1.fc40 fedora 73 k libSM aarch64 1.2.4-1.fc40 fedora 43 k libX11 aarch64 1.8.7-1.fc40 fedora 644 k libX11-common noarch 1.8.7-1.fc40 fedora 176 k libXau aarch64 1.0.11-4.fc40 fedora 32 k libXext aarch64 1.3.5-4.fc40 fedora 39 k libXft aarch64 2.3.8-4.fc40 fedora 71 k libXpm aarch64 3.5.17-1.fc40 fedora 64 k libXrender aarch64 0.9.11-4.fc40 fedora 27 k libXt aarch64 1.3.0-1.fc40 fedora 176 k libaec aarch64 1.0.6-5.fc39 fedora 41 k libaec-devel aarch64 1.0.6-5.fc39 fedora 12 k libaom aarch64 3.7.0-1.fc40 fedora 1.4 M libasan aarch64 13.2.1-4.fc40 fedora 457 k libatomic aarch64 13.2.1-4.fc40 fedora 38 k libavif aarch64 0.11.1-11.fc39 fedora 80 k libb2 aarch64 0.98.1-9.fc39 fedora 24 k libcbor aarch64 0.10.2-2.fc39 fedora 57 k libcurl-devel aarch64 8.4.0-1.fc40 fedora 1.0 M libdatrie aarch64 0.2.13-7.fc39 fedora 32 k libdav1d aarch64 1.2.1-2.fc39 fedora 350 k libedit aarch64 3.1-48.20230828cvs.fc40 fedora 107 k libfabric aarch64 1.19.0-1.fc40 fedora 621 k libfido2 aarch64 1.13.0-3.fc39 fedora 96 k libgfortran aarch64 13.2.1-4.fc40 fedora 440 k libgs aarch64 10.01.2-3.fc39 fedora 3.5 M libibverbs aarch64 48.0-1.fc40 fedora 435 k libijs aarch64 0.35-19.fc39 fedora 29 k libimagequant aarch64 4.0.3-1.fc40 fedora 306 k libjpeg-turbo aarch64 2.1.4-3.fc39 fedora 196 k libjxl aarch64 1:0.8.2-3.fc40 fedora 777 k liblerc aarch64 4.0.0-4.fc39 fedora 179 k libmpc aarch64 1.3.1-3.fc39 fedora 72 k libnl3 aarch64 3.8.0-1.fc40 fedora 343 k libpaper aarch64 1:2.1.1-1.fc39 fedora 27 k libpipeline aarch64 1.5.7-3.fc39 fedora 52 k libpng aarch64 2:1.6.40-1.fc40 fedora 115 k libqhull_r aarch64 1:8.0.2-2.fc40 fedora 193 k libraqm aarch64 0.8.0-5.fc39 fedora 20 k librdmacm aarch64 48.0-1.fc40 fedora 72 k librsvg2 aarch64 2.57.0-3.fc40 fedora 1.6 M libseccomp aarch64 2.5.3-6.fc39 fedora 72 k libstdc++-devel aarch64 13.2.1-4.fc40 fedora 2.6 M libthai aarch64 0.1.29-6.fc39 fedora 213 k libtiff aarch64 4.5.0-3.fc40 fedora 301 k libtool-ltdl aarch64 2.4.7-8.fc40 fedora 36 k libubsan aarch64 13.2.1-4.fc40 fedora 205 k libuv aarch64 1:1.46.0-4.fc40 fedora 245 k libwebp aarch64 1.3.2-2.fc40 fedora 243 k libxcb aarch64 1.16-2.fc40 fedora 245 k libxcrypt-devel aarch64 4.4.36-2.fc39 fedora 30 k libxslt aarch64 1.1.38-3.fc39 fedora 185 k llvm-libs aarch64 17.0.3-1.fc40 fedora 26 M logrotate aarch64 3.21.0-4.fc39 fedora 73 k lzo aarch64 2.10-9.fc39 fedora 64 k man-db aarch64 2.12.0-3.fc40 fedora 1.3 M metis aarch64 5.1.0.3-2.fc39 fedora 567 k mpdecimal aarch64 2.5.1-7.fc39 fedora 90 k mpich aarch64 4.1.2-7.fc40 fedora 1.8 M munge aarch64 0.5.15-5.fc39 fedora 133 k munge-libs aarch64 0.5.15-5.fc39 fedora 21 k ncurses aarch64 6.4-8.20231001.fc40 fedora 417 k netcdf aarch64 4.9.0-5.fc38 fedora 819 k netcdf-cxx4 aarch64 4.3.1-9.fc40 copr_base 82 k netpbm aarch64 11.02.00-2.fc39 fedora 183 k nettle aarch64 3.9.1-2.fc39 fedora 434 k nspr aarch64 4.35.0-15.fc40 fedora 135 k nss aarch64 3.94.0-2.fc40 fedora 691 k nss-softokn aarch64 3.94.0-2.fc40 fedora 412 k nss-softokn-freebl aarch64 3.94.0-2.fc40 fedora 330 k nss-sysinit aarch64 3.94.0-2.fc40 fedora 18 k nss-util aarch64 3.94.0-2.fc40 fedora 86 k numactl-libs aarch64 2.0.16-3.fc39 fedora 30 k openblas aarch64 0.3.24-1.fc40 fedora 37 k openblas-openmp aarch64 0.3.24-1.fc40 fedora 3.8 M openblas-openmp64 aarch64 0.3.24-1.fc40 fedora 3.7 M openjpeg2 aarch64 2.5.0-5.fc40 fedora 176 k openmpi aarch64 5.0.0-1.fc40 copr_base 1.9 M openssh aarch64 9.3p1-13.fc40 fedora 431 k openssh-clients aarch64 9.3p1-13.fc40 fedora 728 k orangefs aarch64 2.9.8-9.fc39 fedora 1.8 M pango aarch64 1.51.0-1.fc40 fedora 339 k perl-AutoLoader noarch 5.74-502.fc40 fedora 21 k perl-B aarch64 1.88-502.fc40 fedora 178 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-502.fc40 fedora 22 k perl-Data-Dumper aarch64 2.188-501.fc39 fedora 55 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 aarch64 2.58-501.fc40 fedora 36 k perl-DynaLoader aarch64 1.54-502.fc40 fedora 26 k perl-Encode aarch64 4:3.19-500.fc39 fedora 1.7 M perl-Errno aarch64 1.37-502.fc40 fedora 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl aarch64 1.15-502.fc40 fedora 21 k perl-File-Basename noarch 2.86-502.fc40 fedora 17 k perl-File-Path noarch 2.18-500.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k perl-File-stat noarch 1.13-502.fc40 fedora 17 k perl-FileHandle noarch 2.05-502.fc40 fedora 16 k perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-502.fc40 fedora 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO aarch64 1.52-502.fc40 fedora 83 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k perl-IPC-Open3 noarch 1.22-502.fc40 fedora 22 k perl-MIME-Base64 aarch64 3.16-500.fc39 fedora 30 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay aarch64 1.92-10.fc39 fedora 356 k perl-POSIX aarch64 2.13-502.fc40 fedora 98 k perl-PathTools aarch64 3.89-500.fc39 fedora 88 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils aarch64 5:1.63-500.fc39 fedora 71 k perl-SelectSaver noarch 1.02-502.fc40 fedora 12 k perl-Socket aarch64 4:2.037-3.fc39 fedora 56 k perl-Storable aarch64 1:3.32-500.fc39 fedora 97 k perl-Symbol noarch 1.09-502.fc40 fedora 14 k perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-502.fc40 fedora 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-502.fc40 fedora 14 k perl-interpreter aarch64 4:5.38.0-502.fc40 fedora 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs aarch64 4:5.38.0-502.fc40 fedora 2.3 M perl-locale noarch 1.10-502.fc40 fedora 14 k perl-mro aarch64 1.28-502.fc40 fedora 29 k perl-overload noarch 1.37-502.fc40 fedora 46 k perl-overloading noarch 0.02-502.fc40 fedora 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-vars noarch 1.05-502.fc40 fedora 13 k petsc-mpich aarch64 3.20.0-1.fc40 copr_base 6.1 M petsc-openmpi aarch64 3.20.0-1.fc40 copr_base 6.2 M pixman aarch64 0.42.2-2.fc39 fedora 216 k pmix aarch64 4.2.7-1.fc40 copr_base 638 k poppler aarch64 23.08.0-1.fc39 fedora 1.1 M poppler-data noarch 0.4.11-5.fc39 fedora 2.0 M poppler-glib aarch64 23.08.0-1.fc39 fedora 178 k procps-ng aarch64 4.0.3-5.fc40 fedora 375 k prrte aarch64 3.0.2-1.fc40 copr_base 79 k prrte-libs aarch64 3.0.2-1.fc40 copr_base 494 k ptscotch-mpich aarch64 7.0.4-1.fc40 copr_base 394 k ptscotch-mpich-devel aarch64 7.0.4-1.fc40 copr_base 50 k ptscotch-mpich-devel-parmetis aarch64 7.0.4-1.fc40 copr_base 14 k ptscotch-openmpi aarch64 7.0.4-1.fc40 copr_base 395 k ptscotch-openmpi-devel aarch64 7.0.4-1.fc40 copr_base 50 k pyproject-rpm-macros noarch 1.10.0-1.fc40 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3-appdirs noarch 1.4.4-11.fc39 fedora 23 k python3-babel noarch 2.12.1-6.fc40 fedora 6.9 M python3-blosc2 aarch64 2.2.5-3.fc39 fedora 271 k python3-brotli aarch64 1.1.0-1.fc40 fedora 346 k python3-cairo aarch64 1.25.1-1.fc40 fedora 129 k python3-certifi noarch 2023.05.07-2.fc39 fedora 14 k python3-cftime aarch64 1.6.3-1.fc40 fedora 207 k python3-charset-normalizer noarch 3.3.1-1.fc40 fedora 107 k python3-contourpy aarch64 1.1.1-1.fc40 fedora 224 k python3-cpuinfo noarch 9.0.0-5.fc39 fedora 68 k python3-cycler noarch 0.11.0-9.fc39 fedora 21 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-docutils noarch 0.20.1-1.fc40 fedora 1.0 M python3-fonttools aarch64 4.43.1-1.fc40 fedora 2.8 M python3-fs noarch 2.4.16-5.fc39 fedora 302 k python3-idna noarch 3.4-5.fc40 fedora 109 k python3-imagesize noarch 1.4.1-5.fc40 fedora 22 k python3-kiwisolver aarch64 1.4.5-1.fc40 fedora 65 k python3-libs aarch64 3.12.0-2.fc40 fedora 9.1 M python3-lxml aarch64 4.9.3-2.fc39 fedora 1.4 M python3-markupsafe aarch64 2.1.3-2.fc39 fedora 30 k python3-matplotlib aarch64 3.8.0-1.fc40 fedora 4.4 M python3-matplotlib-data noarch 3.8.0-1.fc40 fedora 524 k python3-matplotlib-data-fonts noarch 3.8.0-1.fc40 fedora 2.3 M python3-matplotlib-tk aarch64 3.8.0-1.fc40 fedora 48 k python3-mpmath noarch 1.3.0-3.fc39 fedora 1.1 M python3-msgpack aarch64 1.0.6-1.fc40 fedora 121 k python3-natsort noarch 7.1.1-10.fc39 fedora 70 k python3-ndindex aarch64 1.7-9.fc39 fedora 722 k python3-numexpr aarch64 2.8.5-2.fc40 fedora 162 k python3-numpy-f2py aarch64 1:1.26.0-1.fc40 fedora 509 k python3-olefile noarch 0.46-21.fc39 fedora 66 k python3-packaging noarch 23.2-2.fc40 fedora 125 k python3-pillow aarch64 10.1.0-1.fc40 fedora 920 k python3-pillow-tk aarch64 10.1.0-1.fc40 fedora 30 k python3-pooch noarch 1.5.2-12.fc39 fedora 126 k python3-pygments noarch 2.16.1-1.fc40 fedora 2.4 M python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k python3-requests noarch 2.28.2-7.fc40 fedora 152 k python3-rpm-generators noarch 14-8.fc40 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-setuptools noarch 68.2.2-1.fc40 fedora 1.5 M python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-snowballstemmer noarch 2.2.0-7.fc39 fedora 257 k python3-sphinx-theme-alabaster noarch 0.7.13-1.fc40 fedora 29 k python3-sphinxcontrib-applehelp noarch 1.0.7-1.fc40 fedora 45 k python3-sphinxcontrib-devhelp noarch 1.0.2-14.fc39 fedora 41 k python3-sphinxcontrib-htmlhelp noarch 2.0.4-1.fc40 fedora 51 k python3-sphinxcontrib-jsmath noarch 1.0.1-22.fc39 fedora 17 k python3-sphinxcontrib-qthelp noarch 1.0.3-15.fc39 fedora 47 k python3-sphinxcontrib-serializinghtml noarch 1.1.9-1.fc40 fedora 45 k python3-sympy aarch64 1.12-2.fc39 fedora 14 M python3-tkinter aarch64 3.12.0-2.fc40 fedora 407 k python3-urllib3 noarch 1.26.18-1.fc40 fedora 274 k rav1e-libs aarch64 0.6.6-3.fc40 fedora 781 k rhash aarch64 1.4.3-3.fc39 fedora 192 k rpm-mpi-hooks noarch 8-6.fc39 fedora 11 k rsvg-pixbuf-loader aarch64 2.57.0-3.fc40 fedora 16 k scalapack-common aarch64 2.2.0-6.fc40 copr_base 19 k scalapack-mpich aarch64 2.2.0-6.fc40 copr_base 1.5 M scalapack-openmpi aarch64 2.2.0-6.fc40 copr_base 1.5 M shared-mime-info aarch64 2.3-1.fc40 fedora 389 k snappy aarch64 1.1.10-2.fc39 fedora 37 k suitesparse aarch64 5.13.0-4.fc40 fedora 998 k suitesparse64 aarch64 5.13.0-4.fc40 fedora 994 k sundials aarch64 6.6.1-3.fc40 copr_base 1.1 M sundials-mpich aarch64 6.6.1-3.fc40 copr_base 1.2 M sundials-openmpi aarch64 6.6.1-3.fc40 copr_base 1.2 M superlu_dist-mpich aarch64 1:8.1.2-6.fc40 copr_base 467 k superlu_dist-mpich-devel aarch64 1:8.1.2-6.fc40 copr_base 107 k superlu_dist-openmpi aarch64 1:8.1.2-6.fc40 copr_base 470 k superlu_dist-openmpi-devel aarch64 1:8.1.2-6.fc40 copr_base 107 k svt-av1-libs aarch64 1.4.1-3.fc39 fedora 1.0 M systemd aarch64 254.5-2.fc40 fedora 4.6 M systemd-pam aarch64 254.5-2.fc40 fedora 355 k systemd-rpm-macros noarch 254.5-2.fc40 fedora 31 k tcl aarch64 1:8.6.13-1.fc40 fedora 1.1 M tcsh aarch64 6.24.10-2.fc39 fedora 457 k tk aarch64 1:8.6.13-1.fc40 fedora 1.6 M torque-libs aarch64 6.1.3-9.fc39 fedora 180 k tzdata noarch 2023c-4.fc40 fedora 717 k ucx aarch64 1.14.1-4.fc39 fedora 748 k urw-base35-bookman-fonts noarch 20200910-18.fc39 fedora 847 k urw-base35-c059-fonts noarch 20200910-18.fc39 fedora 874 k urw-base35-d050000l-fonts noarch 20200910-18.fc39 fedora 76 k urw-base35-fonts noarch 20200910-18.fc39 fedora 10 k urw-base35-fonts-common noarch 20200910-18.fc39 fedora 21 k urw-base35-gothic-fonts noarch 20200910-18.fc39 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 fedora 795 k urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 fedora 856 k urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-18.fc39 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 fedora 42 k urw-base35-z003-fonts noarch 20200910-18.fc39 fedora 276 k vim-filesystem noarch 2:9.0.2048-1.fc40 fedora 18 k xapian-core-libs aarch64 1.4.23-1.fc39 fedora 710 k xml-common noarch 0.6.3-61.fc39 fedora 31 k yaksa aarch64 0.2-3.fc37 fedora 4.9 M zlib-ng aarch64 2.1.3-2.fc39 fedora 72 k Transaction Summary ============================================================================================= Install 379 Packages Total download size: 394 M Installed size: 1.6 G Downloading Packages: (1/379): MUMPS-mpich-5.5.1-6.fc40.aarch64.rpm 39 MB/s | 1.8 MB 00:00 (2/379): fftw-3.3.10-9.fc40.aarch64.rpm 3.7 MB/s | 40 kB 00:00 (3/379): MUMPS-openmpi-5.5.1-6.fc40.aarch64.rpm 28 MB/s | 1.8 MB 00:00 (4/379): fftw-devel-3.3.10-9.fc40.aarch64.rpm 11 MB/s | 129 kB 00:00 (5/379): fftw-libs-3.3.10-9.fc40.aarch64.rpm 395 kB/s | 8.3 kB 00:00 (6/379): fftw-libs-double-3.3.10-9.fc40.aarch64 24 MB/s | 836 kB 00:00 (7/379): fftw-libs-single-3.3.10-9.fc40.aarch64 31 MB/s | 882 kB 00:00 (8/379): MUMPS-common-5.5.1-6.fc40.noarch.rpm 5.5 MB/s | 831 kB 00:00 (9/379): hypre-mpich-2.24.0-8.fc40.aarch64.rpm 87 MB/s | 1.6 MB 00:00 (10/379): hypre-openmpi-2.24.0-8.fc40.aarch64.r 114 MB/s | 1.6 MB 00:00 (11/379): netcdf-cxx4-4.3.1-9.fc40.aarch64.rpm 6.3 MB/s | 82 kB 00:00 (12/379): openmpi-5.0.0-1.fc40.aarch64.rpm 120 MB/s | 1.9 MB 00:00 (13/379): netcdf-cxx4-devel-4.3.1-9.fc40.aarch6 2.5 MB/s | 57 kB 00:00 (14/379): openmpi-devel-5.0.0-1.fc40.aarch64.rp 223 MB/s | 2.1 MB 00:00 (15/379): fftw-libs-long-3.3.10-9.fc40.aarch64. 7.1 MB/s | 784 kB 00:00 (16/379): petsc-mpich-devel-3.20.0-1.fc40.aarch 116 MB/s | 4.5 MB 00:00 (17/379): petsc-openmpi-3.20.0-1.fc40.aarch64.r 151 MB/s | 6.2 MB 00:00 (18/379): pmix-4.2.7-1.fc40.aarch64.rpm 131 MB/s | 638 kB 00:00 (19/379): prrte-3.0.2-1.fc40.aarch64.rpm 16 MB/s | 79 kB 00:00 (20/379): petsc-openmpi-devel-3.20.0-1.fc40.aar 216 MB/s | 7.0 MB 00:00 (21/379): prrte-libs-3.0.2-1.fc40.aarch64.rpm 44 MB/s | 494 kB 00:00 (22/379): ptscotch-mpich-devel-7.0.4-1.fc40.aar 4.2 MB/s | 50 kB 00:00 (23/379): ptscotch-mpich-7.0.4-1.fc40.aarch64.r 21 MB/s | 394 kB 00:00 (24/379): petsc-mpich-3.20.0-1.fc40.aarch64.rpm 56 MB/s | 6.1 MB 00:00 (25/379): ptscotch-mpich-devel-parmetis-7.0.4-1 670 kB/s | 14 kB 00:00 (26/379): ptscotch-openmpi-7.0.4-1.fc40.aarch64 19 MB/s | 395 kB 00:00 (27/379): scalapack-common-2.2.0-6.fc40.aarch64 1.6 MB/s | 19 kB 00:00 (28/379): ptscotch-openmpi-devel-7.0.4-1.fc40.a 3.6 MB/s | 50 kB 00:00 (29/379): scalapack-mpich-2.2.0-6.fc40.aarch64. 44 MB/s | 1.5 MB 00:00 (30/379): sundials-6.6.1-3.fc40.aarch64.rpm 29 MB/s | 1.1 MB 00:00 (31/379): scalapack-openmpi-2.2.0-6.fc40.aarch6 38 MB/s | 1.5 MB 00:00 (32/379): sundials-devel-6.6.1-3.fc40.aarch64.r 38 MB/s | 909 kB 00:00 (33/379): sundials-mpich-devel-6.6.1-3.fc40.aar 31 MB/s | 954 kB 00:00 (34/379): sundials-openmpi-6.6.1-3.fc40.aarch64 45 MB/s | 1.2 MB 00:00 (35/379): sundials-mpich-6.6.1-3.fc40.aarch64.r 22 MB/s | 1.2 MB 00:00 (36/379): superlu_dist-mpich-8.1.2-6.fc40.aarch 31 MB/s | 467 kB 00:00 (37/379): sundials-openmpi-devel-6.6.1-3.fc40.a 38 MB/s | 953 kB 00:00 (38/379): superlu_dist-openmpi-8.1.2-6.fc40.aar 37 MB/s | 470 kB 00:00 (39/379): superlu_dist-mpich-devel-8.1.2-6.fc40 6.1 MB/s | 107 kB 00:00 (40/379): superlu_dist-openmpi-devel-8.1.2-6.fc 8.5 MB/s | 107 kB 00:00 (41/379): abattis-cantarell-vf-fonts-0.301-10.f 12 MB/s | 121 kB 00:00 (42/379): SuperLUMT64-double-3.1.0-36.fc39.aarc 3.2 MB/s | 78 kB 00:00 (43/379): SuperLUMT-common-3.1.0-36.fc39.noarch 20 MB/s | 642 kB 00:00 (44/379): adobe-mappings-pdf-20190401-5.fc39.no 78 MB/s | 698 kB 00:00 (45/379): adobe-mappings-cmap-20230622-1.fc39.n 63 MB/s | 2.1 MB 00:00 (46/379): adobe-mappings-cmap-deprecated-202306 5.3 MB/s | 113 kB 00:00 (47/379): annobin-docs-12.28-1.fc40.noarch.rpm 18 MB/s | 94 kB 00:00 (48/379): blosc-1.21.4-2.fc39.aarch64.rpm 12 MB/s | 48 kB 00:00 (49/379): annobin-plugin-gcc-12.28-1.fc40.aarch 133 MB/s | 959 kB 00:00 (50/379): avahi-libs-0.8-24.fc39.aarch64.rpm 10 MB/s | 67 kB 00:00 (51/379): cairo-gobject-1.18.0-1.fc40.aarch64.r 11 MB/s | 18 kB 00:00 (52/379): chrpath-0.16-21.fc39.aarch64.rpm 11 MB/s | 30 kB 00:00 (53/379): cairo-1.18.0-1.fc40.aarch64.rpm 114 MB/s | 692 kB 00:00 (54/379): clang-resource-filesystem-17.0.3-1.fc 4.9 MB/s | 14 kB 00:00 (55/379): blosc2-2.10.5-2.fc40.aarch64.rpm 11 MB/s | 184 kB 00:00 (56/379): cmake-data-3.27.7-1.fc40.noarch.rpm 190 MB/s | 2.2 MB 00:00 (57/379): cmake-filesystem-3.27.7-1.fc40.aarch6 3.3 MB/s | 19 kB 00:00 (58/379): cmake-rpm-macros-3.27.7-1.fc40.noarch 1.7 MB/s | 19 kB 00:00 (59/379): cmake-3.27.7-1.fc40.aarch64.rpm 169 MB/s | 7.4 MB 00:00 (60/379): crypto-policies-scripts-20230920-1.gi 14 MB/s | 115 kB 00:00 (61/379): cpp-13.2.1-4.fc40.aarch64.rpm 298 MB/s | 9.7 MB 00:00 (62/379): cups-libs-2.4.7-1.fc40.aarch64.rpm 21 MB/s | 268 kB 00:00 (63/379): dbus-1.14.10-1.fc40.aarch64.rpm 2.4 MB/s | 8.1 kB 00:00 (64/379): dbus-broker-33-2.fc39.aarch64.rpm 38 MB/s | 169 kB 00:00 (65/379): dbus-common-1.14.10-1.fc40.noarch.rpm 6.2 MB/s | 15 kB 00:00 (66/379): dbus-libs-1.14.10-1.fc40.aarch64.rpm 53 MB/s | 156 kB 00:00 (67/379): default-fonts-core-sans-4.0-9.fc40.no 11 MB/s | 32 kB 00:00 (68/379): dejavu-sans-fonts-2.37-21.fc40.noarch 208 MB/s | 1.3 MB 00:00 (69/379): emacs-filesystem-29.1-12.fc40.noarch. 2.3 MB/s | 7.2 kB 00:00 (70/379): doxygen-1.9.8-1.fc40.aarch64.rpm 188 MB/s | 5.2 MB 00:00 (71/379): environment-modules-5.3.1-2.fc39.aarc 32 MB/s | 703 kB 00:00 (72/379): expat-2.5.0-3.fc39.aarch64.rpm 44 MB/s | 108 kB 00:00 (73/379): flexiblas-3.3.1-5.fc39.aarch64.rpm 17 MB/s | 33 kB 00:00 (74/379): flexiblas-devel-3.3.1-5.fc39.aarch64. 49 MB/s | 116 kB 00:00 (75/379): flexiblas-netlib-3.3.1-5.fc39.aarch64 202 MB/s | 2.6 MB 00:00 (76/379): flexiblas-netlib64-3.3.1-5.fc39.aarch 166 MB/s | 2.5 MB 00:00 (77/379): flexiblas-openblas-openmp-3.3.1-5.fc3 4.1 MB/s | 16 kB 00:00 (78/379): flexiblas-openblas-openmp64-3.3.1-5.f 6.7 MB/s | 16 kB 00:00 (79/379): fmt-devel-10.0.0-3.fc39.aarch64.rpm 39 MB/s | 128 kB 00:00 (80/379): fontconfig-2.14.2-5.fc40.aarch64.rpm 68 MB/s | 301 kB 00:00 (81/379): fonts-filesystem-2.0.5-12.fc39.noarch 3.4 MB/s | 8.2 kB 00:00 (82/379): freetype-2.13.1-2.fc39.aarch64.rpm 106 MB/s | 406 kB 00:00 (83/379): fmt-10.0.0-3.fc39.aarch64.rpm 6.6 MB/s | 123 kB 00:00 (84/379): fribidi-1.0.13-2.fc39.aarch64.rpm 35 MB/s | 91 kB 00:00 (85/379): gc-8.2.2-4.fc39.aarch64.rpm 39 MB/s | 110 kB 00:00 (86/379): gcc-c++-13.2.1-4.fc40.aarch64.rpm 216 MB/s | 12 MB 00:00 (87/379): 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Running transaction test Transaction test succeeded. 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sundials-devel-6.6.1-3.fc40.aarch64 361/379 Installing : doxygen-2:1.9.8-1.fc40.aarch64 362/379 Installing : python3-sphinx-1:7.1.2-2.fc40.noarch 363/379 Installing : annobin-plugin-gcc-12.28-1.fc40.aarch64 364/379 Running scriptlet: annobin-plugin-gcc-12.28-1.fc40.aarch64 364/379 Installing : petsc-openmpi-devel-3.20.0-1.fc40.aarch64 365/379 Installing : fmt-devel-10.0.0-3.fc39.aarch64 366/379 Installing : petsc-mpich-devel-3.20.0-1.fc40.aarch64 367/379 Installing : gcc-c++-13.2.1-4.fc40.aarch64 368/379 Installing : gcc-plugin-annobin-13.2.1-4.fc40.aarch64 369/379 Running scriptlet: gcc-plugin-annobin-13.2.1-4.fc40.aarch64 369/379 Installing : gettext-devel-0.22-2.fc39.aarch64 370/379 Installing : python3-boutdata-0.1.10-4.fc39.noarch 371/379 Installing : python3-zoidberg-0.1.1-3.fc39.noarch 372/379 Installing : python3-tables-3.8.0-6.fc40.aarch64 373/379 Installing : flexiblas-devel-3.3.1-5.fc39.aarch64 374/379 Installing : fftw-devel-3.3.10-9.fc40.aarch64 375/379 Installing : mpark-variant-devel-1.4.0-10.fc39.aarch64 376/379 Installing : systemd-rpm-macros-254.5-2.fc40.noarch 377/379 Installing : m4-1.4.19-7.fc40.aarch64 378/379 Installing : chrpath-0.16-21.fc39.aarch64 379/379 Running scriptlet: urw-base35-bookman-fonts-20200910-18.fc39.noarch 379/379 Running scriptlet: urw-base35-c059-fonts-20200910-18.fc39.noarch 379/379 Running scriptlet: urw-base35-d050000l-fonts-20200910-18.fc39.noarc 379/379 Running scriptlet: urw-base35-gothic-fonts-20200910-18.fc39.noarch 379/379 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 379/379 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 379/379 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 379/379 Running scriptlet: urw-base35-p052-fonts-20200910-18.fc39.noarch 379/379 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-18 379/379 Running scriptlet: urw-base35-z003-fonts-20200910-18.fc39.noarch 379/379 Running scriptlet: fontconfig-2.14.2-5.fc40.aarch64 379/379 Running scriptlet: crypto-policies-scripts-20230920-1.git570ea89.fc 379/379 Running scriptlet: nss-3.94.0-2.fc40.aarch64 379/379 Running scriptlet: chrpath-0.16-21.fc39.aarch64 379/379 Installed: MUMPS-common-5.5.1-6.fc40.noarch MUMPS-mpich-5.5.1-6.fc40.aarch64 MUMPS-openmpi-5.5.1-6.fc40.aarch64 SuperLUMT-common-3.1.0-36.fc39.noarch SuperLUMT64-double-3.1.0-36.fc39.aarch64 abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch annobin-docs-12.28-1.fc40.noarch annobin-plugin-gcc-12.28-1.fc40.aarch64 avahi-libs-0.8-24.fc39.aarch64 blosc-1.21.4-2.fc39.aarch64 blosc2-2.10.5-2.fc40.aarch64 cairo-1.18.0-1.fc40.aarch64 cairo-gobject-1.18.0-1.fc40.aarch64 chrpath-0.16-21.fc39.aarch64 clang-libs-17.0.3-1.fc40.aarch64 clang-resource-filesystem-17.0.3-1.fc40.noarch cmake-3.27.7-1.fc40.aarch64 cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.aarch64 cmake-rpm-macros-3.27.7-1.fc40.noarch cpp-13.2.1-4.fc40.aarch64 crypto-policies-scripts-20230920-1.git570ea89.fc40.noarch cups-libs-1:2.4.7-1.fc40.aarch64 dbus-1:1.14.10-1.fc40.aarch64 dbus-broker-33-2.fc39.aarch64 dbus-common-1:1.14.10-1.fc40.noarch dbus-libs-1:1.14.10-1.fc40.aarch64 default-fonts-core-sans-4.0-9.fc40.noarch dejavu-sans-fonts-2.37-21.fc40.noarch doxygen-2:1.9.8-1.fc40.aarch64 emacs-filesystem-1:29.1-12.fc40.noarch environment-modules-5.3.1-2.fc39.aarch64 expat-2.5.0-3.fc39.aarch64 fftw-3.3.10-9.fc40.aarch64 fftw-devel-3.3.10-9.fc40.aarch64 fftw-libs-3.3.10-9.fc40.aarch64 fftw-libs-double-3.3.10-9.fc40.aarch64 fftw-libs-long-3.3.10-9.fc40.aarch64 fftw-libs-single-3.3.10-9.fc40.aarch64 flexiblas-3.3.1-5.fc39.aarch64 flexiblas-devel-3.3.1-5.fc39.aarch64 flexiblas-netlib-3.3.1-5.fc39.aarch64 flexiblas-netlib64-3.3.1-5.fc39.aarch64 flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 flexiblas-openblas-openmp64-3.3.1-5.fc39.aarch64 fmt-10.0.0-3.fc39.aarch64 fmt-devel-10.0.0-3.fc39.aarch64 fontconfig-2.14.2-5.fc40.aarch64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.aarch64 fribidi-1.0.13-2.fc39.aarch64 gc-8.2.2-4.fc39.aarch64 gcc-13.2.1-4.fc40.aarch64 gcc-c++-13.2.1-4.fc40.aarch64 gcc-gfortran-13.2.1-4.fc40.aarch64 gcc-plugin-annobin-13.2.1-4.fc40.aarch64 gd-2.3.3-12.fc39.aarch64 gdk-pixbuf2-2.42.10-5.fc39.aarch64 gettext-0.22-2.fc39.aarch64 gettext-common-devel-0.22-2.fc39.noarch gettext-devel-0.22-2.fc39.aarch64 gettext-envsubst-0.22-2.fc39.aarch64 gettext-libs-0.22-2.fc39.aarch64 gettext-runtime-0.22-2.fc39.aarch64 glib2-2.78.1-1.fc40.aarch64 glibc-devel-2.38.9000-16.fc40.aarch64 gnutls-3.8.1-1.fc40.aarch64 google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-3.fc40.noarch google-noto-sans-vf-fonts-20230801-3.fc40.noarch graphite2-1.3.14-12.fc39.aarch64 graphviz-9.0.0-2.fc40.aarch64 groff-base-1.23.0-2.fc39.aarch64 gts-0.7.6-46.20121130.fc39.aarch64 guile22-2.2.7-9.fc39.aarch64 harfbuzz-8.2.1-2.fc40.aarch64 hdf-libs-4.2.15-14.fc40.aarch64 hdf5-1.12.1-12.fc39.aarch64 hdf5-devel-1.12.1-12.fc39.aarch64 hdf5-mpich-1.12.1-12.fc39.aarch64 hdf5-mpich-devel-1.12.1-12.fc39.aarch64 hdf5-openmpi-1.12.1-12.fc39.aarch64 hdf5-openmpi-devel-1.12.1-12.fc39.aarch64 highway-1.0.7-1.fc40.aarch64 hwloc-libs-2.9.3-1.fc40.aarch64 hypre-mpich-2.24.0-8.fc40.aarch64 hypre-openmpi-2.24.0-8.fc40.aarch64 jbig2dec-libs-0.19-10.fc39.aarch64 jbigkit-libs-2.1-26.fc39.aarch64 jsoncpp-1.9.5-5.fc39.aarch64 kernel-headers-6.6.0-0.rc6.git0.1.fc40.aarch64 kmod-libs-30-6.fc39.aarch64 lasi-1.1.3-11.fc39.aarch64 lcms2-2.15-2.fc39.aarch64 less-643-1.fc40.aarch64 libICE-1.1.1-1.fc40.aarch64 libSM-1.2.4-1.fc40.aarch64 libX11-1.8.7-1.fc40.aarch64 libX11-common-1.8.7-1.fc40.noarch libXau-1.0.11-4.fc40.aarch64 libXext-1.3.5-4.fc40.aarch64 libXft-2.3.8-4.fc40.aarch64 libXpm-3.5.17-1.fc40.aarch64 libXrender-0.9.11-4.fc40.aarch64 libXt-1.3.0-1.fc40.aarch64 libaec-1.0.6-5.fc39.aarch64 libaec-devel-1.0.6-5.fc39.aarch64 libaom-3.7.0-1.fc40.aarch64 libasan-13.2.1-4.fc40.aarch64 libatomic-13.2.1-4.fc40.aarch64 libavif-0.11.1-11.fc39.aarch64 libb2-0.98.1-9.fc39.aarch64 libcbor-0.10.2-2.fc39.aarch64 libcurl-devel-8.4.0-1.fc40.aarch64 libdatrie-0.2.13-7.fc39.aarch64 libdav1d-1.2.1-2.fc39.aarch64 libedit-3.1-48.20230828cvs.fc40.aarch64 libfabric-1.19.0-1.fc40.aarch64 libfido2-1.13.0-3.fc39.aarch64 libgfortran-13.2.1-4.fc40.aarch64 libgs-10.01.2-3.fc39.aarch64 libibverbs-48.0-1.fc40.aarch64 libijs-0.35-19.fc39.aarch64 libimagequant-4.0.3-1.fc40.aarch64 libjpeg-turbo-2.1.4-3.fc39.aarch64 libjxl-1:0.8.2-3.fc40.aarch64 liblerc-4.0.0-4.fc39.aarch64 libmpc-1.3.1-3.fc39.aarch64 libnl3-3.8.0-1.fc40.aarch64 libpaper-1:2.1.1-1.fc39.aarch64 libpipeline-1.5.7-3.fc39.aarch64 libpng-2:1.6.40-1.fc40.aarch64 libqhull_r-1:8.0.2-2.fc40.aarch64 libraqm-0.8.0-5.fc39.aarch64 librdmacm-48.0-1.fc40.aarch64 librsvg2-2.57.0-3.fc40.aarch64 libseccomp-2.5.3-6.fc39.aarch64 libstdc++-devel-13.2.1-4.fc40.aarch64 libthai-0.1.29-6.fc39.aarch64 libtiff-4.5.0-3.fc40.aarch64 libtool-ltdl-2.4.7-8.fc40.aarch64 libubsan-13.2.1-4.fc40.aarch64 libuv-1:1.46.0-4.fc40.aarch64 libwebp-1.3.2-2.fc40.aarch64 libxcb-1.16-2.fc40.aarch64 libxcrypt-devel-4.4.36-2.fc39.aarch64 libxslt-1.1.38-3.fc39.aarch64 llvm-libs-17.0.3-1.fc40.aarch64 logrotate-3.21.0-4.fc39.aarch64 lzo-2.10-9.fc39.aarch64 m4-1.4.19-7.fc40.aarch64 make-1:4.4.1-2.fc39.aarch64 man-db-2.12.0-3.fc40.aarch64 metis-5.1.0.3-2.fc39.aarch64 mpark-variant-devel-1.4.0-10.fc39.aarch64 mpdecimal-2.5.1-7.fc39.aarch64 mpich-4.1.2-7.fc40.aarch64 mpich-devel-4.1.2-7.fc40.aarch64 munge-0.5.15-5.fc39.aarch64 munge-libs-0.5.15-5.fc39.aarch64 ncurses-6.4-8.20231001.fc40.aarch64 netcdf-4.9.0-5.fc38.aarch64 netcdf-cxx4-4.3.1-9.fc40.aarch64 netcdf-cxx4-devel-4.3.1-9.fc40.aarch64 netcdf-devel-4.9.0-5.fc38.aarch64 netpbm-11.02.00-2.fc39.aarch64 nettle-3.9.1-2.fc39.aarch64 nspr-4.35.0-15.fc40.aarch64 nss-3.94.0-2.fc40.aarch64 nss-softokn-3.94.0-2.fc40.aarch64 nss-softokn-freebl-3.94.0-2.fc40.aarch64 nss-sysinit-3.94.0-2.fc40.aarch64 nss-util-3.94.0-2.fc40.aarch64 numactl-libs-2.0.16-3.fc39.aarch64 openblas-0.3.24-1.fc40.aarch64 openblas-openmp-0.3.24-1.fc40.aarch64 openblas-openmp64-0.3.24-1.fc40.aarch64 openjpeg2-2.5.0-5.fc40.aarch64 openmpi-5.0.0-1.fc40.aarch64 openmpi-devel-5.0.0-1.fc40.aarch64 openssh-9.3p1-13.fc40.aarch64 openssh-clients-9.3p1-13.fc40.aarch64 orangefs-2.9.8-9.fc39.aarch64 pango-1.51.0-1.fc40.aarch64 perl-AutoLoader-5.74-502.fc40.noarch perl-B-1.88-502.fc40.aarch64 perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-502.fc40.noarch perl-Data-Dumper-2.188-501.fc39.aarch64 perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-501.fc40.aarch64 perl-DynaLoader-1.54-502.fc40.aarch64 perl-Encode-4:3.19-500.fc39.aarch64 perl-Errno-1.37-502.fc40.aarch64 perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-502.fc40.aarch64 perl-File-Basename-2.86-502.fc40.noarch perl-File-Path-2.18-500.fc39.noarch perl-File-Temp-1:0.231.100-500.fc39.noarch perl-File-stat-1.13-502.fc40.noarch perl-FileHandle-2.05-502.fc40.noarch perl-Getopt-Long-1:2.54-500.fc39.noarch perl-Getopt-Std-1.13-502.fc40.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-502.fc40.aarch64 perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.083-3.fc39.noarch perl-IPC-Open3-1.22-502.fc40.noarch perl-MIME-Base64-3.16-500.fc39.aarch64 perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.aarch64 perl-POSIX-2.13-502.fc40.aarch64 perl-PathTools-3.89-500.fc39.aarch64 perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 perl-SelectSaver-1.02-502.fc40.noarch perl-Socket-4:2.037-3.fc39.aarch64 perl-Storable-1:3.32-500.fc39.aarch64 perl-Symbol-1.09-502.fc40.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-502.fc40.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-502.fc40.noarch perl-interpreter-4:5.38.0-502.fc40.aarch64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.0-502.fc40.aarch64 perl-locale-1.10-502.fc40.noarch perl-mro-1.28-502.fc40.aarch64 perl-overload-1.37-502.fc40.noarch perl-overloading-0.02-502.fc40.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-502.fc40.noarch petsc-mpich-3.20.0-1.fc40.aarch64 petsc-mpich-devel-3.20.0-1.fc40.aarch64 petsc-openmpi-3.20.0-1.fc40.aarch64 petsc-openmpi-devel-3.20.0-1.fc40.aarch64 pixman-0.42.2-2.fc39.aarch64 pmix-4.2.7-1.fc40.aarch64 poppler-23.08.0-1.fc39.aarch64 poppler-data-0.4.11-5.fc39.noarch poppler-glib-23.08.0-1.fc39.aarch64 procps-ng-4.0.3-5.fc40.aarch64 prrte-3.0.2-1.fc40.aarch64 prrte-libs-3.0.2-1.fc40.aarch64 ptscotch-mpich-7.0.4-1.fc40.aarch64 ptscotch-mpich-devel-7.0.4-1.fc40.aarch64 ptscotch-mpich-devel-parmetis-7.0.4-1.fc40.aarch64 ptscotch-openmpi-7.0.4-1.fc40.aarch64 ptscotch-openmpi-devel-7.0.4-1.fc40.aarch64 pyproject-rpm-macros-1.10.0-1.fc40.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0-2.fc40.aarch64 python3-appdirs-1.4.4-11.fc39.noarch python3-babel-2.12.1-6.fc40.noarch python3-blosc2-2.2.5-3.fc39.aarch64 python3-boutdata-0.1.10-4.fc39.noarch python3-boututils-0.1.10-4.fc39.noarch python3-brotli-1.1.0-1.fc40.aarch64 python3-cairo-1.25.1-1.fc40.aarch64 python3-certifi-2023.05.07-2.fc39.noarch python3-cftime-1.6.3-1.fc40.aarch64 python3-charset-normalizer-3.3.1-1.fc40.noarch python3-contourpy-1.1.1-1.fc40.aarch64 python3-cpuinfo-9.0.0-5.fc39.noarch python3-cycler-0.11.0-9.fc39.noarch python3-cython-3.0.2-1.fc40.aarch64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-devel-3.12.0-2.fc40.aarch64 python3-docutils-0.20.1-1.fc40.noarch python3-fonttools-4.43.1-1.fc40.aarch64 python3-fs-2.4.16-5.fc39.noarch python3-idna-3.4-5.fc40.noarch python3-imagesize-1.4.1-5.fc40.noarch python3-jinja2-3.1.2-6.fc40.noarch python3-kiwisolver-1.4.5-1.fc40.aarch64 python3-libs-3.12.0-2.fc40.aarch64 python3-lxml-4.9.3-2.fc39.aarch64 python3-markupsafe-2.1.3-2.fc39.aarch64 python3-matplotlib-3.8.0-1.fc40.aarch64 python3-matplotlib-data-3.8.0-1.fc40.noarch python3-matplotlib-data-fonts-3.8.0-1.fc40.noarch python3-matplotlib-tk-3.8.0-1.fc40.aarch64 python3-mpmath-1.3.0-3.fc39.noarch python3-msgpack-1.0.6-1.fc40.aarch64 python3-natsort-7.1.1-10.fc39.noarch python3-ndindex-1.7-9.fc39.aarch64 python3-netcdf4-1.6.5-1.fc40.aarch64 python3-numexpr-2.8.5-2.fc40.aarch64 python3-numpy-1:1.26.0-1.fc40.aarch64 python3-numpy-f2py-1:1.26.0-1.fc40.aarch64 python3-olefile-0.46-21.fc39.noarch python3-packaging-23.2-2.fc40.noarch python3-pillow-10.1.0-1.fc40.aarch64 python3-pillow-tk-10.1.0-1.fc40.aarch64 python3-pooch-1.5.2-12.fc39.noarch python3-pygments-2.16.1-1.fc40.noarch python3-pyparsing-3.0.9-11.fc39.noarch python3-requests-2.28.2-7.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-scipy-1.11.1-1.fc39.aarch64 python3-setuptools-68.2.2-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-snowballstemmer-2.2.0-7.fc39.noarch python3-sphinx-1:7.1.2-2.fc40.noarch python3-sphinx-theme-alabaster-0.7.13-1.fc40.noarch python3-sphinxcontrib-applehelp-1.0.7-1.fc40.noarch python3-sphinxcontrib-devhelp-1.0.2-14.fc39.noarch python3-sphinxcontrib-htmlhelp-2.0.4-1.fc40.noarch python3-sphinxcontrib-jsmath-1.0.1-22.fc39.noarch python3-sphinxcontrib-qthelp-1.0.3-15.fc39.noarch python3-sphinxcontrib-serializinghtml-1.1.9-1.fc40.noarch python3-sympy-1.12-2.fc39.aarch64 python3-tables-3.8.0-6.fc40.aarch64 python3-tkinter-3.12.0-2.fc40.aarch64 python3-urllib3-1.26.18-1.fc40.noarch python3-zoidberg-0.1.1-3.fc39.noarch rav1e-libs-0.6.6-3.fc40.aarch64 rhash-1.4.3-3.fc39.aarch64 rpm-mpi-hooks-8-6.fc39.noarch rsvg-pixbuf-loader-2.57.0-3.fc40.aarch64 scalapack-common-2.2.0-6.fc40.aarch64 scalapack-mpich-2.2.0-6.fc40.aarch64 scalapack-openmpi-2.2.0-6.fc40.aarch64 shared-mime-info-2.3-1.fc40.aarch64 snappy-1.1.10-2.fc39.aarch64 suitesparse-5.13.0-4.fc40.aarch64 suitesparse64-5.13.0-4.fc40.aarch64 sundials-6.6.1-3.fc40.aarch64 sundials-devel-6.6.1-3.fc40.aarch64 sundials-mpich-6.6.1-3.fc40.aarch64 sundials-mpich-devel-6.6.1-3.fc40.aarch64 sundials-openmpi-6.6.1-3.fc40.aarch64 sundials-openmpi-devel-6.6.1-3.fc40.aarch64 superlu_dist-mpich-1:8.1.2-6.fc40.aarch64 superlu_dist-mpich-devel-1:8.1.2-6.fc40.aarch64 superlu_dist-openmpi-1:8.1.2-6.fc40.aarch64 superlu_dist-openmpi-devel-1:8.1.2-6.fc40.aarch64 svt-av1-libs-1.4.1-3.fc39.aarch64 systemd-254.5-2.fc40.aarch64 systemd-pam-254.5-2.fc40.aarch64 systemd-rpm-macros-254.5-2.fc40.noarch tcl-1:8.6.13-1.fc40.aarch64 tcsh-6.24.10-2.fc39.aarch64 tk-1:8.6.13-1.fc40.aarch64 torque-libs-6.1.3-9.fc39.aarch64 tzdata-2023c-4.fc40.noarch ucx-1.14.1-4.fc39.aarch64 urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.0.2048-1.fc40.noarch xapian-core-libs-1.4.23-1.fc39.aarch64 xml-common-0.6.3-61.fc39.noarch yaksa-0.2-3.fc37.aarch64 zlib-devel-1.2.13-5.fc40.aarch64 zlib-ng-2.1.3-2.fc39.aarch64 Complete! Finish: build setup for bout++-5.1.0-2.fc40.src.rpm Start: rpmbuild bout++-5.1.0-2.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1698537600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lNkwub + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf BOUT++-v5.1.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.1.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BOUT++-v5.1.0 + rm -rf /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fmt10.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-sphinx.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py + rm -rf externalpackages/mpark.variant/ + mkdir -p externalpackages/mpark.variant/include/ + rm -rf tools/pylib/boutdata + rm -rf tools/pylib/boututils ++ find -L tools/pylib/ -type f ++ grep -v _boutcore_build + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/rms.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0ZBu4y + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.1.0 + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + for mpi in mpich openmpi + mkdir build_mpich + for mpi in mpich openmpi + mkdir build_openmpi + for mpi in mpich openmpi + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-aarch64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-aarch64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-aarch64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64; export _LMFILES_; LOADEDMODULES=mpi/mpich-aarch64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-aarch64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-aarch64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + /usr/bin/cmake -S . -B build_mpich -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/mpich-aarch64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.12/site-packages/mpich -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON -- Configuring BOUT++ version 5.2.0 -- The CXX compiler identification is GNU 13.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:391 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python3 or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Numpy: /usr/include (found version "1.26.0") -- Found Cython: TRUE (found version "3.0.2") -- Found Bash: /usr/bin/bash (found version "5.2.15") -- Building BOUT++ Python interface -- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "4.0") -- Found MPI: TRUE (found version "4.0") -- Enable OpenMP: OFF -- HYPRE support: OFF -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0' -- Found PETSc: /usr/include/mpich-aarch64/petsc -- PETSc support: ON -- Using external mpark.variant -- Using external fmt -- PVODE support: ON -- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.0") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") -- NetCDF support: ON -- Found FFTW: /usr/lib64/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl -- LAPACK support: TRUE -- SLEPc support: OFF -- SUNDIALS support: ON -- Found Gettext: /usr/bin/msgmerge (found version "0.22") -- Found Intl: built in to C library -- libuuid not found, using fallback UUID generator -- UUID_SYSTEM_GENERATOR: FALSE -- Enable coverage: OFF -- Git revision: Unknown -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Message stack: BOUT_USE_MSGSTACK=ON -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -- Setting build type to 'RelWithDebInfo' as none was specified. CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Python: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter -- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE -- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE -- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC -- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS -- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : ON SLEPc support : OFF SUNDIALS support : ON HYPRE support : OFF NetCDF support : ON FFTW support : ON LAPACK support : TRUE OpenMP support : OFF Natural language support : ON ScoreP support : OFF System UUID generator : FALSE Extra debug output : OFF Runtime error check level: 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON RAJA enabled : OFF Umpire enabled : OFF Caliper enabled : OFF CUDA enabled : OFF Metric type : 2D Python API support : ON Sanitizers enabled : None === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib:/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib:$PYTHONPATH *** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich` to compile BOUT++ *** -- Configuring done (8.6s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich + /usr/bin/cmake --build build_mpich -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/mofiles.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 0%] Generating locale/es/libbout.gmo, _mo_file_es [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o [ 0%] Generating locale/de/libbout.gmo, _mo_file_de cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/pvbbdpre.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/es/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/de/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/es/libbout.po cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/de/libbout.po [ 2%] Generating locale/fr/libbout.gmo, _mo_file_fr cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/fr/ [ 2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_CN/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/fr/libbout.po cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_CN/libbout.po [ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o [ 5%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_TW/ cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/band.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_TW/libbout.po gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 5%] Built target mofiles [ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/llnlmath.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 429 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 485 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 543 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 565 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 583 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 698 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 714 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 730 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 745 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 761 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 777 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 809 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 824 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 831 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 837 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 850 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable] 189 | N_Vector v, v1, v2; | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable] 533 | integer N, N_global; | ^~~~~~~~ [ 8%] Linking CXX shared library ../../lib/libpvpre.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o -Wl,-rpath,:::::::::::::::::::::: In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1826:45, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp))) | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here 1843 | real del, delp, dcon; | ^~~~ In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1944:28, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1827:41, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) { | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here 1971 | real del, delp, dcon; | ^~~~ [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvspgmr.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/iterativ.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable] 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~~~~~~~ cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvdiag.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 11%] Built target pvpre [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized] 328 | for (i=1; i <= krydim; i++) yg[i]=ZERO; | ~~^~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here 161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized] 386 | if (rho < beta) { | ^~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 82 | if (swap = (l != k)) { | ~~~~~^~~~~~~~~~ [ 11%] Linking CXX shared library ../../lib/libpvode.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,:::::::::::::::::::::: cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 11%] Built target pvode /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 14%] Generating bout++-time.cxx /usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.1.0/cmake/GenerateDateTimeFile.cmake cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/bout++.cxx /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field2d.cxx /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field3d.cxx /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field_data.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field_factory.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/fieldgenerators.cxx [ 20%] Building CXX object 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. 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No LaplaceXY available | ^~~~~~~ [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/laplacexz.cxx [ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/parderiv/impls/cyclic/cyclic.cxx [ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -c 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/pardiv/invert_pardiv.cxx [ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o /usr/lib64/mpich/bin/mpicxx 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_region.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 80 | if (mesh->firstY()) { | ~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_factory.hxx:32, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 83 | if (mesh->lastY()) { | ~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 | t); | ~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_op.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:6: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 517 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1445 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 2152 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromfile.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/difops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized] 471 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here 442 | comm_handle xin, xout; | ^~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/index_derivs.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation_xz.cxx In file included from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:36, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/options.hxx:43, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/deriv_store.hxx:42, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:48, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.hxx:8, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:36: In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field3d.hxx:203:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2256:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:106:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2267:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/bilinear_xz.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_xz.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_z.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/interpolation_z.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/gyro_average.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/physicsmodel.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/smoothing.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/snb.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/snb.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/sourcex.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/arkode/arkode.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:387:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 387 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:49: /usr/include/mpich-aarch64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:425:37: warning: ‘int CVSpilsSetPreconditioner(void*, CVSpilsPrecSetupFn, CVSpilsPrecSolveFn)’ is deprecated: use CVodeSetPreconditioner instead [-Wdeprecated-declarations] 425 | if (CVSpilsSetPreconditioner(cvode_mem, nullptr, cvode_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-aarch64/cvode/cvode_spils.h:49:5: note: declared here 49 | int CVSpilsSetPreconditioner(void *cvode_mem, CVSpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:437:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 437 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-aarch64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:451:29: warning: ‘int CVSpilsSetJacTimes(void*, CVSpilsJacTimesSetupFn, CVSpilsJacTimesVecFn)’ is deprecated: use CVodeSetJacTimes instead [-Wdeprecated-declarations] 451 | if (CVSpilsSetJacTimes(cvode_mem, nullptr, cvode_jac) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-aarch64/cvode/cvode_spils.h:53:5: note: declared here 53 | int CVSpilsSetJacTimes(void *cvode_mem, CVSpilsJacTimesSetupFn jtsetup, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::run()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:546:28: warning: ‘int CVSpilsGetNumPrecSolves(void*, long int*)’ is deprecated: use CVodeGetNumPrecSolves instead [-Wdeprecated-declarations] 546 | CVSpilsGetNumPrecSolves(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-aarch64/cvode/cvode_spils.h:64:5: note: declared here 64 | int CVSpilsGetNumPrecSolves(void *cvode_mem, long int *npsolves); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:548:26: warning: ‘int CVSpilsGetNumLinIters(void*, long int*)’ is deprecated: use CVodeGetNumLinIters instead [-Wdeprecated-declarations] 548 | CVSpilsGetNumLinIters(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-aarch64/cvode/cvode_spils.h:67:5: note: declared here 67 | int CVSpilsGetNumLinIters(void *cvode_mem, long int *nliters); | ^~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/euler/euler.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx: In member function ‘virtual int IdaSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:199:30: warning: ‘int IDASpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use IDASetLinearSolver instead [-Wdeprecated-declarations] 199 | if (IDASpilsSetLinearSolver(idamem, sun_solver) != IDA_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:45: /usr/include/mpich-aarch64/ida/ida_spils.h:44:5: note: declared here 44 | int IDASpilsSetLinearSolver(void *ida_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:234:36: warning: ‘int IDASpilsSetPreconditioner(void*, IDASpilsPrecSetupFn, IDASpilsPrecSolveFn)’ is deprecated: use IDASetPreconditioner instead [-Wdeprecated-declarations] 234 | if (IDASpilsSetPreconditioner(idamem, nullptr, ida_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/mpich-aarch64/ida/ida_spils.h:47:5: note: declared here 47 | int IDASpilsSetPreconditioner(void *ida_mem, IDASpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/petsc/petsc.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/power/power.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/pvode/pvode.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/rk3-ssp/rk3-ssp.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o 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-I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/boutexception.cxx [ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/derivs.cxx [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables 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CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/generator_context.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:25: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o /usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.10.0.0 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx: In member function ‘__ct_base ’: /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 68 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 91%] Built target bout++ /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 94%] Generating resolve_enum.pxd [ 94%] Generating boutcpp.pxd [ 94%] Generating boutpp.pyx [ 94%] Generating helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.cxx [ 94%] Generating helper.h cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.h [ 94%] Cythonizing python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.12 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True warning: resolve_enum.pxd:49:21: 'deflt' redeclared warning: resolve_enum.pxd:189:24: 'Standard' redeclared warning: resolve_enum.pxd:223:15: 'Standard' redeclared warning: bout_options.pxd:22:21: Rvalue-reference as function argument not supported warning: bout_options.pxd:24:32: Rvalue-reference as function argument not supported cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 94%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx In file included from /usr/include/numpy/ndarraytypes.h:1929, from /usr/include/numpy/ndarrayobject.h:12, from /usr/include/numpy/arrayobject.h:5, from /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:1195: /usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:40890:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 40890 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9225:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 9225 | return __pyx_r; | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:8868:12: note: ‘__pyx_r’ was declared here 8868 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:65103:42: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:65197:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 65197 | __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2989, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:10736:18: note: ‘__pyx_r’ was declared here 10736 | BRACKET_METHOD __pyx_r; | ^~~~~~~ [ 97%] Linking CXX shared library libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-312-aarch64-linux-gnu.so -o libboutpp.cpython-312-aarch64-linux-gnu.so "CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 97%] Built target boutpp.cpython-312-aarch64-linux-gnu /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target boutpp gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 + PYPA= + LDPA=/usr/lib64/mpich/lib ++ pwd + export PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/ + PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/ ++ pwd + export LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib/ + LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib/ + /usr/bin/cmake --build build_mpich/manual -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual//CMakeFiles/progress.marks cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/gmake -f CMakeFiles/Makefile2 manual/all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Generating HTML documentation with Sphinx in /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs Running Sphinx v7.1.2 breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 46 source files that are out of date updating environment: [new config] 46 added, 0 changed, 0 removed No mlab available reading sources... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.12/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents looking for now-outdated files... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short. Working with an active ``conda`` environment ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given done WARNING: unsupported theme option 'use_issues_button' given WARNING: unsupported theme option 'home_page_in_toc' given copying assets... copying static files... done copying extra files... done done writing output... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' generating indices... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Could not lex literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [100%] figs/init_balloon.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 115 warnings. The HTML pages are in docs. cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs/index.html Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs/index.html gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target sphinx-html /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target docs gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 + export LD_LIBRARY_PATH=/usr/lib64/mpich/lib + LD_LIBRARY_PATH=/usr/lib64/mpich/lib + export PYTHONPATH= + PYTHONPATH= + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval 'MPI_COMPILER=openmpi-aarch64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-aarch64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-aarch64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-aarch64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-aarch64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-aarch64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-aarch64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + /usr/bin/cmake -S . -B build_openmpi -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/openmpi-aarch64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON -- Configuring BOUT++ version 5.2.0 -- The CXX compiler identification is GNU 13.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:391 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python3 or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Numpy: /usr/include (found version "1.26.0") -- Found Cython: TRUE (found version "3.0.2") -- Found Bash: /usr/bin/bash (found version "5.2.15") -- Building BOUT++ Python interface -- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Enable OpenMP: OFF -- HYPRE support: OFF -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0' -- Found PETSc: /usr/include/openmpi-aarch64/petsc -- PETSc support: ON -- Using external mpark.variant -- Using external fmt -- PVODE support: ON -- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.0") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") -- NetCDF support: ON -- Found FFTW: /usr/lib64/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl -- LAPACK support: TRUE -- SLEPc support: OFF -- SUNDIALS support: ON -- Found Gettext: /usr/bin/msgmerge (found version "0.22") -- Found Intl: built in to C library -- libuuid not found, using fallback UUID generator -- UUID_SYSTEM_GENERATOR: FALSE -- Enable coverage: OFF -- Git revision: Unknown -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Message stack: BOUT_USE_MSGSTACK=ON -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -- Setting build type to 'RelWithDebInfo' as none was specified. CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Python: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter -- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE -- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE -- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC -- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS -- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : ON SLEPc support : OFF SUNDIALS support : ON HYPRE support : OFF NetCDF support : ON FFTW support : ON LAPACK support : TRUE OpenMP support : OFF Natural language support : ON ScoreP support : OFF System UUID generator : FALSE Extra debug output : OFF Runtime error check level: 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON RAJA enabled : OFF Umpire enabled : OFF Caliper enabled : OFF CUDA enabled : OFF Metric type : 2D Python API support : ON Sanitizers enabled : None === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib:/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib:$PYTHONPATH *** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi` to compile BOUT++ *** -- Configuring done (8.0s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi + /usr/bin/cmake --build build_openmpi -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/mofiles.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build /usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build /usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o [ 0%] Generating locale/es/libbout.gmo, _mo_file_es cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/pvbbdpre.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/es/ [ 0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/es/libbout.po /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 429 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 485 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 543 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 565 | #pragma omp parallel for reduction(+: sum) | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 583 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 698 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 714 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 730 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 745 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 761 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 777 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 809 | #pragma omp parallel for | [ 0%] Generating locale/de/libbout.gmo, _mo_file_de /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 824 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 831 | #pragma omp parallel for | cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/de/ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 837 | #pragma omp parallel for | /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 850 | #pragma omp parallel for | cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/de/libbout.po /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable] 189 | N_Vector v, v1, v2; | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable] 533 | integer N, N_global; | ^~~~~~~~ [ 2%] Generating locale/fr/libbout.gmo, _mo_file_fr cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/fr/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/fr/libbout.po [ 2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_CN/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_CN/libbout.po [ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/band.cpp [ 5%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_TW/ cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_TW/libbout.po gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 5%] Built target mofiles [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/llnlmath.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvspgmr.cpp In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1826:45, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp))) | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here 1843 | real del, delp, dcon; | ^~~~ In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1944:28, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1827:41, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) { | ^ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here 1971 | real del, delp, dcon; | ^~~~ [ 8%] Linking CXX shared library ../../lib/libpvpre.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o -Wl,-rpath,:::::::::::::::::::::::: [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/iterativ.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable] 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized] 328 | for (i=1; i <= krydim; i++) yg[i]=ZERO; | ~~^~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here 161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized] 386 | if (rho < beta) { | ^~ /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~ [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o [ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvdiag.cpp /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’: /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 82 | if (swap = (l != k)) { | ~~~~~^~~~~~~~~~ cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 11%] Built target pvpre [ 11%] Linking CXX shared library ../../lib/libpvode.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,:::::::::::::::::::::::: cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 11%] Built target pvode /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 14%] Generating bout++-time.cxx /usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.1.0/cmake/GenerateDateTimeFile.cmake cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/bout++.cxx 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field2d.cxx /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field.cxx [ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/pardiv/invert_pardiv.cxx [ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_region.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 80 | if (mesh->firstY()) { | ~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_factory.hxx:32, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 83 | if (mesh->lastY()) { | ~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 | t); | ~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_op.hxx:9, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:6: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 517 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1445 | t); | ~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 2152 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromfile.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromoptions.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/difops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx [ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’: /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized] 471 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here 442 | comm_handle xin, xout; | ^~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/index_derivs.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation_xz.cxx In file included from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:36, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/options.hxx:43, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/deriv_store.hxx:42, from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:48, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.hxx:8, from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:36: In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field3d.hxx:203:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2256:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ In member function ‘std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const’, inlined from ‘std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool’ at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from ‘Array >::empty() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44, inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:106:48, inlined from ‘BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2267:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/bilinear_xz.cxx [ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_xz.cxx [ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects 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-I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/physicsmodel.cxx [ 62%] Building CXX object CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/physics/sourcex.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/adams_bashforth/adams_bashforth.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/arkode/arkode.cxx [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:387:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 387 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:49: /usr/include/openmpi-aarch64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:425:37: warning: ‘int CVSpilsSetPreconditioner(void*, CVSpilsPrecSetupFn, CVSpilsPrecSolveFn)’ is deprecated: use CVodeSetPreconditioner instead [-Wdeprecated-declarations] 425 | if (CVSpilsSetPreconditioner(cvode_mem, nullptr, cvode_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-aarch64/cvode/cvode_spils.h:49:5: note: declared here 49 | int CVSpilsSetPreconditioner(void *cvode_mem, CVSpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:437:33: warning: ‘int CVSpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations] 437 | if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-aarch64/cvode/cvode_spils.h:43:5: note: declared here 43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:451:29: warning: ‘int CVSpilsSetJacTimes(void*, CVSpilsJacTimesSetupFn, CVSpilsJacTimesVecFn)’ is deprecated: use CVodeSetJacTimes instead [-Wdeprecated-declarations] 451 | if (CVSpilsSetJacTimes(cvode_mem, nullptr, cvode_jac) != CV_SUCCESS) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-aarch64/cvode/cvode_spils.h:53:5: note: declared here 53 | int CVSpilsSetJacTimes(void *cvode_mem, CVSpilsJacTimesSetupFn jtsetup, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx: In member function ‘virtual int CvodeSolver::run()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:546:28: warning: ‘int CVSpilsGetNumPrecSolves(void*, long int*)’ is deprecated: use CVodeGetNumPrecSolves instead [-Wdeprecated-declarations] 546 | CVSpilsGetNumPrecSolves(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-aarch64/cvode/cvode_spils.h:64:5: note: declared here 64 | int CVSpilsGetNumPrecSolves(void *cvode_mem, long int *npsolves); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/cvode/cvode.cxx:548:26: warning: ‘int CVSpilsGetNumLinIters(void*, long int*)’ is deprecated: use CVodeGetNumLinIters instead [-Wdeprecated-declarations] 548 | CVSpilsGetNumLinIters(cvode_mem, &temp_long_int); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-aarch64/cvode/cvode_spils.h:67:5: note: declared here 67 | int CVSpilsGetNumLinIters(void *cvode_mem, long int *nliters); | ^~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/euler/euler.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx: In member function ‘virtual int IdaSolver::init()’: /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:199:30: warning: ‘int IDASpilsSetLinearSolver(void*, SUNLinearSolver)’ is deprecated: use IDASetLinearSolver instead [-Wdeprecated-declarations] 199 | if (IDASpilsSetLinearSolver(idamem, sun_solver) != IDA_SUCCESS) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:45: /usr/include/openmpi-aarch64/ida/ida_spils.h:44:5: note: declared here 44 | int IDASpilsSetLinearSolver(void *ida_mem, SUNLinearSolver LS); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/ida/ida.cxx:234:36: warning: ‘int IDASpilsSetPreconditioner(void*, IDASpilsPrecSetupFn, IDASpilsPrecSolveFn)’ is deprecated: use IDASetPreconditioner instead [-Wdeprecated-declarations] 234 | if (IDASpilsSetPreconditioner(idamem, nullptr, ida_pre_shim)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openmpi-aarch64/ida/ida_spils.h:47:5: note: declared here 47 | int IDASpilsSetPreconditioner(void *ida_mem, IDASpilsPrecSetupFn pset, | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/petsc/petsc.cxx [ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/power/power.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/pvode/pvode.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/solver/impls/rk3-ssp/rk3-ssp.cxx [ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o 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-I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/boutexception.cxx [ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects 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Implementations should override the Context version of this function. [-Wdeprecated-declarations] 43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:25: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here 70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o /usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.10.0.0 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx: In member function ‘__ct_base ’: /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 68 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 91%] Built target bout++ /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 94%] Generating resolve_enum.pxd [ 94%] Generating boutcpp.pxd [ 94%] Generating boutpp.pyx [ 94%] Generating helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd [ 94%] Generating helper.h cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.h [ 94%] Cythonizing python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.12 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True warning: resolve_enum.pxd:49:21: 'deflt' redeclared warning: resolve_enum.pxd:189:24: 'Standard' redeclared warning: resolve_enum.pxd:223:15: 'Standard' redeclared warning: bout_options.pxd:22:21: Rvalue-reference as function argument not supported warning: bout_options.pxd:24:32: Rvalue-reference as function argument not supported cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o [ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx In file included from /usr/include/numpy/ndarraytypes.h:1929, from /usr/include/numpy/ndarrayobject.h:12, from /usr/include/numpy/arrayobject.h:5, from /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:1195: /usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:40890:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 40890 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9225:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 9225 | return __pyx_r; | ^~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:8868:12: note: ‘__pyx_r’ was declared here 8868 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:65103:42: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:65197:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 65197 | __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2989, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:10736:18: note: ‘__pyx_r’ was declared here 10736 | BRACKET_METHOD __pyx_r; | ^~~~~~~ [ 97%] Linking CXX shared library libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-312-aarch64-linux-gnu.so -o libboutpp.cpython-312-aarch64-linux-gnu.so "CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/boutexception_helper.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 97%] Built target boutpp.cpython-312-aarch64-linux-gnu /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target boutpp gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 + PYPA= + LDPA=/usr/lib64/openmpi/lib ++ pwd + export PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/ + PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/ ++ pwd + export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib/ + LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib/ + /usr/bin/cmake --build build_openmpi/manual -j4 --verbose Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual//CMakeFiles/progress.marks cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/gmake -f CMakeFiles/Makefile2 manual/all gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Generating HTML documentation with Sphinx in /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs Running Sphinx v7.1.2 breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 46 source files that are out of date updating environment: [new config] 46 added, 0 changed, 0 removed No mlab available reading sources... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.12/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. looking for now-outdated files... /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short. Working with an active ``conda`` environment ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/lib/python3.12/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given done copying assets... WARNING: unsupported theme option 'use_issues_button' given WARNING: unsupported theme option 'home_page_in_toc' given copying static files... done copying extra files... done done writing output... [100%] user_docs/variable_init /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' generating indices... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Could not lex literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [100%] figs/init_balloon.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 115 warnings. The HTML pages are in docs. cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs/index.html Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs/index.html gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target sphinx-html /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target docs gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 + export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib + LD_LIBRARY_PATH=/usr/lib64/openmpi/lib + export PYTHONPATH= + PYTHONPATH= + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SE0l28 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.1.0 + for mpi in mpich openmpi + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-aarch64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-aarch64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-aarch64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64; export _LMFILES_; LOADEDMODULES=mpi/mpich-aarch64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-aarch64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-aarch64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 + /usr/bin/cmake --install build_mpich -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12/site-packages/mpich/boutpp/__init__.py -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/libpvode.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/libpvode.so -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/libpvpre.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "///usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/libpvpre.so -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++ -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/vector.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/spgmr.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/smalldense.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/pvbbdpre.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/nvector.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/llnltyps.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/llnlmath.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/iterativ.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/cvspgmr.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/cvode.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/cvdiag.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/include/mpich-aarch64/bout++/pvode/band.h -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/locale/es/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/locale/de/LC_MESSAGES/libbout.mo -- Installing: 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/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake ++ find /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/mpich ++ grep -E '/libbout|/libpvode|/libpvpre' + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libbout++.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libbout++.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libbout++.so.5.1.0 /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libbout++.so.5.1.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvpre.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvode.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvode.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib 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Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/sphinx_highlight.js -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/pygments.css + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval 'MPI_COMPILER=openmpi-aarch64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-aarch64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-aarch64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-aarch64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-aarch64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-aarch64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-aarch64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 + /usr/bin/cmake --install build_openmpi -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so" to "///usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12/site-packages/openmpi/boutpp/__init__.py -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/openmpi/lib/libpvode.so.1.0.0 -- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "///usr/lib64/openmpi/lib" -- Installing: 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/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake ++ find /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/openmpi ++ grep -E '/libbout|/libpvode|/libpvpre' + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libbout++.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libbout++.so.5.1.0 /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libbout++.so.5.1.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvpre.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvode.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib + rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/bout++ + mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/modulefiles/bout++ + cat + DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 + /usr/bin/cmake --install build_openmpi/manual -- Install configuration: "RelWithDebInfo" -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++/ -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//objects.inv -- Installing: 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/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/minus.png -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/plus.png -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/searchtools.js -- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/sphinx_highlight.js -- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++//_static/pygments.css + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 libbout + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.1.0-2.fc40 --unique-debug-suffix -5.1.0-2.fc40.aarch64 --unique-debug-src-base bout++-5.1.0-2.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v5.1.0 find-debuginfo: starting Extracting debug info from 8 files DWARF-compressing 8 files sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/bout++-5.1.0-2.fc40.aarch64 21602 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.p0hiOO + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.1.0 + fail=1 + for mpi in mpich openmpi + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-aarch64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-aarch64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-aarch64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64; export _LMFILES_; LOADEDMODULES=mpi/mpich-aarch64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-aarch64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-aarch64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ~/build/BUILD/BOUT++-v5.1.0/build_mpich ~/build/BUILD/BOUT++-v5.1.0 ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + pushd build_mpich + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash # Cores: 3 make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j4 build-check /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 build-check make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 72 make -f CMakeFiles/Makefile2 CMakeFiles/build-check.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 0%] Building CXX object tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o [ 1%] Built target pvpre cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/lib64/mpich/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgtest_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/src/gtest-all.cc [ 4%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 43%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 44%] Building CXX object tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y/wave.cxx [ 44%] Building CXX object tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o [ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection/advection.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion/diffusion.cxx [ 44%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 44%] Linking CXX executable cyto cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 44%] Built target MMS-wave-1d-y make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Building CXX object tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -MF CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o.d -o CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci/fci_mms.cxx [ 45%] Linking CXX executable advection cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target MMS-diffusion make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d/wave.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target MMS-advection make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx [ 45%] Linking CXX executable fci_mms cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-spatial-fci.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o" -o fci_mms -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../../lib/libpvode.so.1.0.0 ../../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 47%] Linking CXX executable test_yupdown_weights cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 47%] Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target boutpp.cpython-312-aarch64-linux-gnu make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace/boutexcept.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target MMS-spatial-fci make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler/test_beuler.cxx [ 50%] Linking CXX executable boutexcept cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 50%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Built target test-backtrace make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 50%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx [ 51%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 51%] Built target MMS-wave-1d make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args/command-args.cxx [ 52%] Linking CXX executable command-args cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 52%] Linking CXX executable test_beuler cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 52%] Linking CXX executable test-bout-override-default-option cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications/test-communications.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 52%] Built target test_beuler make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Built target test-bout-override-default-option make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic/test_cyclic.cxx [ 54%] Linking CXX executable test-coordinates-initialization cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1 [ 54%] Linking CXX executable test-communications cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Built target test-coordinates-initialization make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2/test_delp2.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 54%] Built target test-communications make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade/test-datafile-facade.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Built target gtest make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability/2fluid.cxx [ 55%] Linking CXX executable test_cyclic cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 55%] Linking CXX executable test-datafile-facade cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 55%] Linking CXX executable test_delp2 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2 -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 55%] Built target test-cyclic make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered/2fluid.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Built target test-datafile-facade make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 56%] Built target test-delp2 make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata/test_griddata.cxx [ 58%] Linking CXX executable test_fieldgroupcomm cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-fieldgroupComm make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-griddata make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro/test_gyro.cxx [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1 [ 58%] Built target test-drift-instability make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial/test_initial.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Built target test-griddata-yboundary-guards make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 58%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability/2fluid.cxx [ 59%] Linking CXX executable test_gyro cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-gyro make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate/test_interpolate.cxx [ 59%] Linking CXX executable test_initial cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-drift-instability-staggered make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Built target test-initial make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" [ 59%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z/test_interpolate.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 59%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:4: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator::setup() [with T = Field3D; PetscErrorCode = int]’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19: required from here /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:44: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ [ 61%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 61%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 62%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-interpolate make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar/test_invpar.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-interchange-instability make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace/test_laplace.cxx [ 62%] Linking CXX executable invertable_operator cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-interpolate-z make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Built target test-invertable-operator make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 62%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx [ 62%] Linking CXX executable test_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 63%] Linking CXX executable test_invpar cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 65%] Linking CXX executable test-laplace3d cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 65%] Built target test-laplace make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 65%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short/test-laplacexy.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 65%] Built target test-invpar make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz/test-laplacexz.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Built target test-laplace-petsc3d make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx [ 66%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 66%] Built target test-laplacexy-fv make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx [ 68%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-laplacexy-short make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf/test-options-netcdf.cxx [ 68%] Linking CXX executable test-laplacexz cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 68%] Linking CXX executable test_multigrid_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 68%] Built target test-laplacexz make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx [ 69%] Linking CXX executable test_naulin_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 69%] Linking CXX executable test-options-netcdf cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Built target test-multigrid-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 69%] Built target test-naulin-laplace make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io/test-restart-io.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Built target test-options-netcdf make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting/test_restarting.cxx [ 70%] Linking CXX executable test-restart-io cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 70%] Linking CXX executable test_restarting cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 70%] Linking CXX executable test_petsc_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 70%] Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth/test_smooth.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Built target test-restart-io make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb/test_snb.cxx [ 72%] Linking CXX executable test_petsc_laplace_MAST_grid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 72%] Built target test-petsc-laplace make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver/test_solver.cxx [ 73%] Linking CXX executable test_smooth cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Built target test-smooth make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash/squash.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 73%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck/test_stopCheck.cxx [ 73%] Linking CXX executable test_snb cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 73%] Linking CXX executable squash cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 75%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 75%] Linking CXX executable test_solver cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-squash make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file/test_stopCheck.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-snb make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-stopCheck make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Built target test-solver make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 75%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec/testVec.cxx [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl [ 76%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target test-twistshift make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target test-twistshift-staggered [ 76%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown/test_yupdown.cxx make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target build-check-mms-tests make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/mpich/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/src/gmock-all.cc make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 76%] Built target test-stopCheck-file make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 77%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 77%] Built target boutpp [ 79%] Linking CXX executable testVec cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target test-vec [ 79%] Linking CXX executable test_yupdown cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target build-check-integrated-tests [ 79%] Linking CXX shared library ../../../../../lib/libgmock.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../../../../lib/libgtest.so.1.10.0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 79%] Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field3d.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode 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CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem 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/usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field.cxx /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx: In function ‘int main(int, char**)’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx:29:18: warning: unused variable ‘hyprelib’ [-Wunused-variable] 29 | bout::HypreLib hyprelib{}; | ^~~~~~~~ [ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto 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-I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables 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tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem 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tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem 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94%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem 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tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock 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-I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_raja.cxx /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_raja.cxx:96:7: warning: multi-line comment [-Wcomment] 96 | #if 0 // disable temporarily until reconcile iteration space for parallel_forall under \ | ^ [100%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/test_extras.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/test_extras.cxx.o -MF CMakeFiles/serial_tests.dir/test_extras.cxx.o.d -o CMakeFiles/serial_tests.dir/test_extras.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.cxx [100%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem 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CXX executable serial_tests cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.1.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.6.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.6.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.6.1 -ldl /usr/bin/ld: /tmp/ccgxjTkA.ltrans105.ltrans.o: in function `testing::internal::TestFactoryImpl::CreateTest()': /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_netcdf.cxx:28:(.text+0x1510): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [100%] Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 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-B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 72 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 43%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 44%] Built target MMS-wave-1d-y make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/advection/CMakeFiles/MMS-advection.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 44%] Built target MMS-advection make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 44%] Built target MMS-diffusion make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target MMS-spatial-fci make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target MMS-wave-1d make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' [ 45%] Built target build-check-mms-tests make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' ctest -R MMS- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich Start 52: MMS-diffusion 1/8 Test #52: MMS-diffusion .................... Passed 5.54 sec Start 53: MMS-spatial-fci 2/8 Test #53: MMS-spatial-fci .................. Passed 5.07 sec Start 54: MMS-wave-1d 3/8 Test #54: MMS-wave-1d ...................... Passed 3.11 sec Start 55: MMS-wave-1d-y 4/8 Test #55: MMS-wave-1d-y .................... Passed 3.18 sec Start 56: MMS-bracket 5/8 Test #56: MMS-bracket ...................... Passed 0.27 sec Start 57: MMS-derivatives3 6/8 Test #57: MMS-derivatives3 ................. Passed 0.63 sec Start 58: MMS-shiftedmetricinterp 7/8 Test #58: MMS-shiftedmetricinterp .......... Passed 3.08 sec Start 59: MMS-upwinding3 8/8 Test #59: MMS-upwinding3 ................... Passed 0.94 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 21.84 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target check-mms-tests make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target gtest make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/unit/CMakeFiles/serial_tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target build-check-unit-tests make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' ctest -R serial_tests --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich Start 1: serial_tests 1/1 Test #1: serial_tests ..................... Passed 4.90 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 4.90 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target check-unit-tests make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target boutpp.cpython-312-aarch64-linux-gnu make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target boutpp make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-backtrace make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test_beuler make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-bout-override-default-option make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-communications/CMakeFiles/test-communications.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-communications make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-coordinates-initialization make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-cyclic make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-delp2 make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-datafile-facade make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-drift-instability make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-drift-instability-staggered make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-fieldgroupComm make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-griddata make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-griddata-yboundary-guards make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-gyro make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-initial/CMakeFiles/test-initial.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-initial make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-interchange-instability make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-interpolate make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-interpolate-z make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-invertable-operator make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-invpar make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-laplace make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-laplace-petsc3d make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-laplacexy-fv make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-laplacexy-short make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-laplacexz make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-multigrid-laplace make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-naulin-laplace make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-options-netcdf make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-petsc-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-restart-io make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-smooth make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-snb/CMakeFiles/test-snb.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-snb make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-solver/CMakeFiles/test-solver.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-solver make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-squash/CMakeFiles/test-squash.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-squash make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-stopCheck make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-stopCheck-file make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-twistshift make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-twistshift-staggered make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-vec/CMakeFiles/test-vec.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-vec make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target build-check-integrated-tests make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' ctest -R test- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich Start 2: test-backtrace 1/49 Test #2: test-backtrace ...................... Passed 0.85 sec Start 4: test-boutpp-collect 2/49 Test #4: test-boutpp-collect ................. Passed 0.36 sec Start 5: test-boutpp-collect-staggered 3/49 Test #5: test-boutpp-collect-staggered ....... Passed 0.36 sec Start 6: test-boutpp-legacy-model 4/49 Test #6: test-boutpp-legacy-model ............ Passed 0.57 sec Start 7: test-boutpp-mms-ddz 5/49 Test #7: test-boutpp-mms-ddz ................. Passed 0.23 sec Start 8: test-boutpp-print 6/49 Test #8: test-boutpp-print ................... Passed 0.24 sec Start 9: test-boutpp-simple-model 7/49 Test #9: test-boutpp-simple-model ............ Passed 0.58 sec Start 10: test-bout-override-default-option 8/49 Test #10: test-bout-override-default-option ... Passed 0.04 sec Start 11: test-command-args 9/49 Test #11: test-command-args ................... Passed 2.22 sec Start 12: test-communications 10/49 Test #12: test-communications ................. Passed 17.09 sec Start 13: test-coordinates-initialization 11/49 Test #13: test-coordinates-initialization ..... Passed 0.37 sec Start 14: test-cyclic 12/49 Test #14: test-cyclic ......................... Passed 2.10 sec Start 15: test-delp2 13/49 Test #15: test-delp2 .......................... Passed 7.15 sec Start 16: test-datafile-facade 14/49 Test #16: test-datafile-facade ................ Passed 2.14 sec Start 17: test-drift-instability 15/49 Test #17: test-drift-instability .............. Passed 4.08 sec Start 18: test-drift-instability-staggered 16/49 Test #18: test-drift-instability-staggered .... Passed 4.27 sec Start 19: test-fieldgroupComm 17/49 Test #19: test-fieldgroupComm ................. Passed 1.72 sec Start 20: test-griddata 18/49 Test #20: test-griddata ....................... Passed 0.62 sec Start 21: test-griddata-yboundary-guards 19/49 Test #21: test-griddata-yboundary-guards ...... Passed 9.71 sec Start 22: test-gyro 20/49 Test #22: test-gyro ........................... Passed 1.18 sec Start 23: test-initial 21/49 Test #23: test-initial ........................ Passed 8.55 sec Start 24: test-interchange-instability 22/49 Test #24: test-interchange-instability ........ Passed 9.34 sec Start 25: test-interpolate 23/49 Test #25: test-interpolate .................... Passed 4.02 sec Start 26: test-interpolate-z 24/49 Test #26: test-interpolate-z .................. Passed 1.60 sec Start 27: test-invertable-operator 25/49 Test #27: test-invertable-operator ............ Passed 0.94 sec Start 28: test-invpar 26/49 Test #28: test-invpar ......................... Passed 1.42 sec Start 29: test-laplace 27/49 Test #29: test-laplace ........................ Passed 8.12 sec Start 30: test-laplace-petsc3d 28/49 Test #30: test-laplace-petsc3d ................ Passed 7.75 sec Start 31: test-laplacexy-fv 29/49 Test #31: test-laplacexy-fv ................... Passed 67.91 sec Start 32: test-laplacexy-short 30/49 Test #32: test-laplacexy-short ................ Passed 169.91 sec Start 33: test-laplacexz 31/49 Test #33: test-laplacexz ...................... Passed 1.22 sec Start 34: test-multigrid-laplace 32/49 Test #34: test-multigrid-laplace .............. Passed 2.30 sec Start 35: test-naulin-laplace 33/49 Test #35: test-naulin-laplace ................. Passed 1.16 sec Start 36: test-options-netcdf 34/49 Test #36: test-options-netcdf ................. Passed 0.63 sec Start 37: test-petsc-laplace 35/49 Test #37: test-petsc-laplace .................. Passed 2.66 sec Start 38: test-petsc-laplace-MAST-grid 36/49 Test #38: test-petsc-laplace-MAST-grid ........ Passed 9.65 sec Start 39: test-restart-io 37/49 Test #39: test-restart-io ..................... Passed 2.96 sec Start 40: test-restarting 38/49 Test #40: test-restarting ..................... Passed 2.37 sec Start 41: test-smooth 39/49 Test #41: test-smooth ......................... Passed 1.47 sec Start 42: test-snb 40/49 Test #42: test-snb ............................ Passed 0.12 sec Start 43: test-solver 41/49 Test #43: test-solver ......................... Passed 2.35 sec Start 44: test-squash 42/49 Test #44: test-squash ......................... Passed 13.21 sec Start 45: test-stopCheck 43/49 Test #45: test-stopCheck ...................... Passed 0.26 sec Start 46: test-stopCheck-file 44/49 Test #46: test-stopCheck-file ................. Passed 2.57 sec Start 47: test-twistshift 45/49 Test #47: test-twistshift ..................... Passed 0.68 sec Start 48: test-twistshift-staggered 46/49 Test #48: test-twistshift-staggered ........... Passed 0.68 sec Start 49: test-vec 47/49 Test #49: test-vec ............................ Passed 0.56 sec Start 50: test-yupdown 48/49 Test #50: test-yupdown ........................ Passed 0.90 sec Start 51: test-yupdown-weights 49/49 Test #51: test-yupdown-weights ................ Passed 0.67 sec 100% tests passed, 0 tests failed out of 49 Total Test time (real) = 381.92 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target check-integrated-tests make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' Built target check make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich' + popd ~/build/BUILD/BOUT++-v5.1.0 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval 'MPI_COMPILER=openmpi-aarch64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-aarch64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-aarch64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-aarch64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-aarch64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-aarch64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-aarch64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + pushd build_openmpi ~/build/BUILD/BOUT++-v5.1.0/build_openmpi ~/build/BUILD/BOUT++-v5.1.0 + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash # Cores: 3 make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j4 build-check /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 build-check make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 72 make -f CMakeFiles/Makefile2 CMakeFiles/build-check.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 0%] Building CXX object tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgtest_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/src/gtest-all.cc [ 1%] Built target pvpre [ 4%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 43%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Building CXX object tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o [ 44%] Building CXX object tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y/wave.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection/advection.cxx [ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion/diffusion.cxx [ 44%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 44%] Linking CXX executable cyto cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 44%] Linking CXX executable advection cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Built target MMS-wave-1d-y make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Building CXX object tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -MF CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o.d -o CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci/fci_mms.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target MMS-diffusion make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d/wave.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target MMS-advection make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx [ 45%] Linking CXX executable fci_mms cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-spatial-fci.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o" -o fci_mms -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../../lib/libpvode.so.1.0.0 ../../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 47%] Linking CXX executable test_yupdown_weights cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 47%] Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Built target boutpp.cpython-312-aarch64-linux-gnu make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace/boutexcept.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Linking CXX executable boutexcept cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1 [ 50%] Built target MMS-spatial-fci make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler/test_beuler.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Built target test-backtrace make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 50%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx [ 50%] Linking CXX executable wave cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 51%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 51%] Built target MMS-wave-1d make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args/command-args.cxx [ 52%] Linking CXX executable command-args cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 52%] Linking CXX executable test-bout-override-default-option cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 52%] Linking CXX executable test_beuler cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications/test-communications.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 52%] Built target test-bout-override-default-option make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Built target test_beuler make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic/test_cyclic.cxx [ 54%] Linking CXX executable test-coordinates-initialization cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 54%] Linking CXX executable test-communications cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Built target test-coordinates-initialization make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2/test_delp2.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 54%] Built target test-communications make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade/test-datafile-facade.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Built target gtest make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability/2fluid.cxx [ 55%] Linking CXX executable test_cyclic cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 55%] Linking CXX executable test-datafile-facade cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 55%] Linking CXX executable test_delp2 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2 -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 55%] Built target test-cyclic make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered/2fluid.cxx [ 56%] Built target test-datafile-facade make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 56%] Built target test-delp2 make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata/test_griddata.cxx [ 58%] Linking CXX executable test_fieldgroupcomm cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Built target test-fieldgroupComm make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Built target test-griddata make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro/test_gyro.cxx [ 58%] Linking CXX executable test_griddata cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 58%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Built target test-griddata-yboundary-guards make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 58%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial/test_initial.cxx [ 59%] Linking CXX executable test_gyro cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-drift-instability make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability/2fluid.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-gyro make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate/test_interpolate.cxx [ 59%] Linking CXX executable test_initial cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-drift-instability-staggered make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z/test_interpolate.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Built target test-initial make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 59%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:4: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator::setup() [with T = Field3D; PetscErrorCode = int]’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19: required from here /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:44: /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 222 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 225 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 231 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 262 | if (localmesh->firstY() or localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 265 | if (localmesh->firstY()) { | ~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here 441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 270 | if (localmesh->lastY()) { | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here 445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ [ 61%] Linking CXX executable 2fluid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 61%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 62%] Linking CXX executable test_interpolate cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-interpolate make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar/test_invpar.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-interchange-instability make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace/test_laplace.cxx [ 62%] Linking CXX executable invertable_operator cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-interpolate-z make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Built target test-invertable-operator make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 62%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx [ 63%] Linking CXX executable test_invpar cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 63%] Linking CXX executable test_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 65%] Linking CXX executable test-laplace3d cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 65%] Built target test-laplace make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 65%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short/test-laplacexy.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 65%] Built target test-invpar make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz/test-laplacexz.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Built target test-laplace-petsc3d make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx [ 66%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 66%] Built target test-laplacexy-fv make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx [ 68%] Linking CXX executable test-laplacexy cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 68%] Linking CXX executable test-laplacexz cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-laplacexy-short make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf/test-options-netcdf.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 68%] Built target test-laplacexz make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx [ 69%] Linking CXX executable test_multigrid_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 69%] Linking CXX executable test_naulin_laplace cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Built target test-multigrid-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx [ 69%] Linking CXX executable test-options-netcdf cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 69%] Built target test-naulin-laplace make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io/test-restart-io.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Built target test-options-netcdf make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting/test_restarting.cxx [ 70%] Linking CXX executable test_petsc_laplace [ 70%] Linking CXX executable test_restarting cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 70%] Linking CXX executable test-restart-io cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 70%] Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth/test_smooth.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Built target test-restart-io make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb/test_snb.cxx [ 72%] Linking CXX executable test_petsc_laplace_MAST_grid cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 72%] Built target test-petsc-laplace make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver/test_solver.cxx [ 73%] Linking CXX executable test_smooth cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Built target test-smooth make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash/squash.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 73%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck/test_stopCheck.cxx [ 73%] Linking CXX executable test_snb cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 73%] Linking CXX executable squash cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 75%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-squash make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file/test_stopCheck.cxx [ 75%] Linking CXX executable test_solver cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-stopCheck make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-snb make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered/test-twistshift.cxx make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Built target test-solver make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 75%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec/testVec.cxx [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 76%] Linking CXX executable test-twistshift cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl [ 76%] Linking CXX executable test_stopCheck cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target test-twistshift make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target test-twistshift-staggered [ 76%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown/test_yupdown.cxx make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target build-check-mms-tests make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/src/gmock-all.cc make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 76%] Built target test-stopCheck-file make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 77%] Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 77%] Built target boutpp [ 79%] Linking CXX executable testVec cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target test-vec [ 79%] Linking CXX executable test_yupdown cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target build-check-integrated-tests [ 79%] Linking CXX shared library ../../../../../lib/libgmock.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../../../lib/libgtest.so.1.10.0 cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 79%] Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o [ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field2d.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -MF CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field3d.cxx cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field.cxx /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx: In function ‘int main(int, char**)’: /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx:29:18: warning: unused variable ‘hyprelib’ [-Wunused-variable] 29 | bout::HypreLib hyprelib{}; | ^~~~~~~~ [ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field_factory.cxx [ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto 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tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem 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tests/unit/CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_timer.cxx [ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem 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CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.1.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.6.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.6.1 -ldl /usr/bin/ld: /tmp/cceoyUn2.ltrans105.ltrans.o: in function `testing::internal::TestFactoryImpl::CreateTest()': /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_netcdf.cxx:28:(.text+0x1510): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target build-check-unit-tests make -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [100%] Built target build-check make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' + SEGFAULT_SIGNALS=segv + make check /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 72 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 1%] Built target pvpre make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 4%] Built target pvode make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 43%] Built target bout++ make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Built target MMS-wave-1d-y make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/advection/CMakeFiles/MMS-advection.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Built target MMS-advection make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 44%] Built target MMS-diffusion make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target MMS-spatial-fci make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target MMS-wave-1d make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' [ 45%] Built target build-check-mms-tests make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' ctest -R MMS- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi Start 52: MMS-diffusion 1/8 Test #52: MMS-diffusion .................... Passed 11.26 sec Start 53: MMS-spatial-fci 2/8 Test #53: MMS-spatial-fci .................. Passed 15.03 sec Start 54: MMS-wave-1d 3/8 Test #54: MMS-wave-1d ...................... Passed 9.57 sec Start 55: MMS-wave-1d-y 4/8 Test #55: MMS-wave-1d-y .................... Passed 9.69 sec Start 56: MMS-bracket 5/8 Test #56: MMS-bracket ...................... Passed 1.30 sec Start 57: MMS-derivatives3 6/8 Test #57: MMS-derivatives3 ................. Passed 1.68 sec Start 58: MMS-shiftedmetricinterp 7/8 Test #58: MMS-shiftedmetricinterp .......... Passed 4.10 sec Start 59: MMS-upwinding3 8/8 Test #59: MMS-upwinding3 ................... Passed 2.00 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 54.68 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target check-mms-tests make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target gtest make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target gmock make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/unit/CMakeFiles/serial_tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target serial_tests make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target build-check-unit-tests make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' ctest -R serial_tests --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi Start 1: serial_tests 1/1 Test #1: serial_tests ..................... Passed 5.82 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 5.83 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target check-unit-tests make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-yupdown-weights make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-aarch64-linux-gnu.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target boutpp.cpython-312-aarch64-linux-gnu make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Building python interface cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-aarch64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target boutpp make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-backtrace make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test_beuler make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-bout-override-default-option make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-command-args make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-communications/CMakeFiles/test-communications.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-communications make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-coordinates-initialization make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-cyclic make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-delp2 make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-datafile-facade make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-drift-instability make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-drift-instability-staggered make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-fieldgroupComm make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-griddata make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-griddata-yboundary-guards make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-gyro make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-initial/CMakeFiles/test-initial.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-initial make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-interchange-instability make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-interpolate make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-interpolate-z make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-invertable-operator make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-invpar make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-laplace make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-laplace-petsc3d make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-laplacexy-fv make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-laplacexy-short make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-laplacexz make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-multigrid-laplace make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-naulin-laplace make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-options-netcdf make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-petsc-laplace make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-petsc-laplace-MAST-grid make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-restart-io make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-restarting make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-smooth make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-snb/CMakeFiles/test-snb.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-snb make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-solver/CMakeFiles/test-solver.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-solver make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-squash/CMakeFiles/test-squash.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-squash make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-stopCheck make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-stopCheck-file make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-twistshift make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-twistshift-staggered make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-vec/CMakeFiles/test-vec.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-vec make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target test-yupdown make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target build-check-integrated-tests make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-integrated-tests.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' ctest -R test- --output-on-failure Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi Start 2: test-backtrace 1/49 Test #2: test-backtrace ...................... Passed 0.83 sec Start 4: test-boutpp-collect 2/49 Test #4: test-boutpp-collect ................. Passed 0.39 sec Start 5: test-boutpp-collect-staggered 3/49 Test #5: test-boutpp-collect-staggered ....... Passed 1.39 sec Start 6: test-boutpp-legacy-model 4/49 Test #6: test-boutpp-legacy-model ............ Passed 1.60 sec Start 7: test-boutpp-mms-ddz 5/49 Test #7: test-boutpp-mms-ddz ................. Passed 0.27 sec Start 8: test-boutpp-print 6/49 Test #8: test-boutpp-print ................... Passed 1.27 sec Start 9: test-boutpp-simple-model 7/49 Test #9: test-boutpp-simple-model ............ Passed 0.63 sec Start 10: test-bout-override-default-option 8/49 Test #10: test-bout-override-default-option ... Passed 0.05 sec Start 11: test-command-args 9/49 Test #11: test-command-args ................... Passed 14.67 sec Start 12: test-communications 10/49 Test #12: test-communications ................. Passed 9.41 sec Start 13: test-coordinates-initialization 11/49 Test #13: test-coordinates-initialization ..... Passed 1.45 sec Start 14: test-cyclic 12/49 Test #14: test-cyclic ......................... Passed 15.33 sec Start 15: test-delp2 13/49 Test #15: test-delp2 .......................... Passed 20.12 sec Start 16: test-datafile-facade 14/49 Test #16: test-datafile-facade ................ Passed 4.30 sec Start 17: test-drift-instability 15/49 Test #17: test-drift-instability .............. Passed 6.29 sec Start 18: test-drift-instability-staggered 16/49 Test #18: test-drift-instability-staggered .... Passed 6.43 sec Start 19: test-fieldgroupComm 17/49 Test #19: test-fieldgroupComm ................. Passed 4.97 sec Start 20: test-griddata 18/49 Test #20: test-griddata ....................... Passed 1.71 sec Start 21: test-griddata-yboundary-guards 19/49 Test #21: test-griddata-yboundary-guards ...... Passed 9.02 sec Start 22: test-gyro 20/49 Test #22: test-gyro ........................... Passed 4.40 sec Start 23: test-initial 21/49 Test #23: test-initial ........................ Passed 12.81 sec Start 24: test-interchange-instability 22/49 Test #24: test-interchange-instability ........ Passed 11.58 sec Start 25: test-interpolate 23/49 Test #25: test-interpolate .................... Passed 17.01 sec Start 26: test-interpolate-z 24/49 Test #26: test-interpolate-z .................. Passed 5.93 sec Start 27: test-invertable-operator 25/49 Test #27: test-invertable-operator ............ Passed 3.13 sec Start 28: test-invpar 26/49 Test #28: test-invpar ......................... Passed 7.90 sec Start 29: test-laplace 27/49 Test #29: test-laplace ........................ Passed 18.15 sec Start 30: test-laplace-petsc3d 28/49 Test #30: test-laplace-petsc3d ................ Passed 12.06 sec Start 31: test-laplacexy-fv 29/49 Test #31: test-laplacexy-fv ................... Passed 8.97 sec Start 32: test-laplacexy-short 30/49 Test #32: test-laplacexy-short ................ Passed 15.54 sec Start 33: test-laplacexz 31/49 Test #33: test-laplacexz ...................... Passed 4.44 sec Start 34: test-multigrid-laplace 32/49 Test #34: test-multigrid-laplace .............. Passed 4.47 sec Start 35: test-naulin-laplace 33/49 Test #35: test-naulin-laplace ................. Passed 3.27 sec Start 36: test-options-netcdf 34/49 Test #36: test-options-netcdf ................. Passed 1.70 sec Start 37: test-petsc-laplace 35/49 Test #37: test-petsc-laplace .................. Passed 5.88 sec Start 38: test-petsc-laplace-MAST-grid 36/49 Test #38: test-petsc-laplace-MAST-grid ........ Passed 25.83 sec Start 39: test-restart-io 37/49 Test #39: test-restart-io ..................... Passed 6.23 sec Start 40: test-restarting 38/49 Test #40: test-restarting ..................... Passed 7.80 sec Start 41: test-smooth 39/49 Test #41: test-smooth ......................... Passed 5.84 sec Start 42: test-snb 40/49 Test #42: test-snb ............................ Passed 1.15 sec Start 43: test-solver 41/49 Test #43: test-solver ......................... Passed 3.38 sec Start 44: test-squash 42/49 Test #44: test-squash ......................... Passed 20.96 sec Start 45: test-stopCheck 43/49 Test #45: test-stopCheck ...................... Passed 0.27 sec Start 46: test-stopCheck-file 44/49 Test #46: test-stopCheck-file ................. Passed 5.31 sec Start 47: test-twistshift 45/49 Test #47: test-twistshift ..................... Passed 1.77 sec Start 48: test-twistshift-staggered 46/49 Test #48: test-twistshift-staggered ........... Passed 1.77 sec Start 49: test-vec 47/49 Test #49: test-vec ............................ Passed 1.65 sec Start 50: test-yupdown 48/49 Test #50: test-yupdown ........................ Passed 3.06 sec Start 51: test-yupdown-weights 49/49 Test #51: test-yupdown-weights ................ Passed 1.76 sec 100% tests passed, 0 tests failed out of 49 Total Test time (real) = 324.21 sec make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target check-integrated-tests make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' Built target check make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi' + popd ~/build/BUILD/BOUT++-v5.1.0 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bout++-mpich-5.1.0-2.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.eoUjxh + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + DOCDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/README.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.bib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.cff /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.yxw5rc + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-mpich + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-mpich + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-mpich = 5.1.0-2.fc40 bout++-mpich(aarch-64) = 5.1.0-2.fc40 bundled(libpvode) libbout++.so.5.1.0()(64bit)(mpich-aarch64) libpvode.so.1.0.0()(64bit)(mpich-aarch64) libpvpre.so.1.0.0()(64bit)(mpich-aarch64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.12()(64bit)(mpich-aarch64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.20()(64bit)(mpich-aarch64) libpvode.so.1.0.0()(64bit)(mpich-aarch64) libpvpre.so.1.0.0()(64bit)(mpich-aarch64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.5()(64bit)(mpich-aarch64) libsundials_cvode.so.6()(64bit)(mpich-aarch64) libsundials_ida.so.6()(64bit)(mpich-aarch64) libsundials_nvecparallel.so.6()(64bit)(mpich-aarch64) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-mpich-devel-5.1.0-2.fc40.aarch64 Provides: bout++-mpich-devel = 5.1.0-2.fc40 bout++-mpich-devel(aarch-64) = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel Processing files: python3-bout++-mpich-5.1.0-2.fc40.aarch64 Provides: libboutpp.cpython-312-aarch64-linux-gnu.so()(64bit)(mpich-aarch64) python-bout++-mpich = 5.1.0-2.fc40 python3-bout++-mpich = 5.1.0-2.fc40 python3-bout++-mpich(aarch-64) = 5.1.0-2.fc40 python3.12-bout++-mpich = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbout++.so.5.1.0()(64bit)(mpich-aarch64) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-openmpi-5.1.0-2.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4quxCY + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + DOCDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/README.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.bib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.cff /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.OOqrWZ + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-openmpi + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-openmpi + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-openmpi = 5.1.0-2.fc40 bout++-openmpi(aarch-64) = 5.1.0-2.fc40 bundled(libpvode) libbout++.so.5.1.0()(64bit)(openmpi-aarch64) libpvode.so.1.0.0()(64bit)(openmpi-aarch64) libpvpre.so.1.0.0()(64bit)(openmpi-aarch64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.40()(64bit)(openmpi-aarch64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.20()(64bit)(openmpi-aarch64) libpvode.so.1.0.0()(64bit)(openmpi-aarch64) libpvpre.so.1.0.0()(64bit)(openmpi-aarch64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.5()(64bit)(openmpi-aarch64) libsundials_cvode.so.6()(64bit)(openmpi-aarch64) libsundials_ida.so.6()(64bit)(openmpi-aarch64) libsundials_nvecparallel.so.6()(64bit)(openmpi-aarch64) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-openmpi-devel-5.1.0-2.fc40.aarch64 Provides: bout++-openmpi-devel = 5.1.0-2.fc40 bout++-openmpi-devel(aarch-64) = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel Processing files: python3-bout++-openmpi-5.1.0-2.fc40.aarch64 Provides: libboutpp.cpython-312-aarch64-linux-gnu.so()(64bit)(openmpi-aarch64) python-bout++-openmpi = 5.1.0-2.fc40 python3-bout++-openmpi = 5.1.0-2.fc40 python3-bout++-openmpi(aarch-64) = 5.1.0-2.fc40 python3.12-bout++-openmpi = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbout++.so.5.1.0()(64bit)(openmpi-aarch64) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-common-5.1.0-2.fc40.aarch64 Provides: bout++-common = 5.1.0-2.fc40 bout++-common(aarch-64) = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-bout++-5.1.0-2.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZCTdCj + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + DOCDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/README.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.bib /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CITATION.cff /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/doc/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.okfabM + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/python3-bout++ + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/python3-bout++ + cp -pr /builddir/build/BUILD/BOUT++-v5.1.0/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64/usr/share/licenses/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bout++ = 5.1.0-2.fc40 python3-bout++ = 5.1.0-2.fc40 python3.12-bout++ = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy Processing files: bout++-doc-5.1.0-2.fc40.noarch Provides: bout++-doc = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debugsource-5.1.0-2.fc40.aarch64 Provides: bout++-debugsource = 5.1.0-2.fc40 bout++-debugsource(aarch-64) = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debuginfo-5.1.0-2.fc40.aarch64 Provides: bout++-debuginfo = 5.1.0-2.fc40 bout++-debuginfo(aarch-64) = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(aarch-64) = 5.1.0-2.fc40 Processing files: bout++-mpich-debuginfo-5.1.0-2.fc40.aarch64 Provides: bout++-mpich-debuginfo = 5.1.0-2.fc40 bout++-mpich-debuginfo(aarch-64) = 5.1.0-2.fc40 debuginfo(build-id) = 0af33e30b1005c83a0ea3a46fa533cfee163e10e debuginfo(build-id) = 51140cc25690a1d727563966a99795a3559b9ccf debuginfo(build-id) = e6dedd4184d46fc639721eaae48072880414d388 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(aarch-64) = 5.1.0-2.fc40 Processing files: python3-bout++-mpich-debuginfo-5.1.0-2.fc40.aarch64 Provides: debuginfo(build-id) = 661012e03cd8f0ac7e4fc76506543c627a461182 python-bout++-mpich-debuginfo = 5.1.0-2.fc40 python3-bout++-mpich-debuginfo = 5.1.0-2.fc40 python3-bout++-mpich-debuginfo(aarch-64) = 5.1.0-2.fc40 python3.12-bout++-mpich-debuginfo = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(aarch-64) = 5.1.0-2.fc40 Processing files: bout++-openmpi-debuginfo-5.1.0-2.fc40.aarch64 Provides: bout++-openmpi-debuginfo = 5.1.0-2.fc40 bout++-openmpi-debuginfo(aarch-64) = 5.1.0-2.fc40 debuginfo(build-id) = 09241da962d1b9ec268a2496dbd97aa92d54c195 debuginfo(build-id) = 3e62ae71e7f599085d3488404ffe4874b4248774 debuginfo(build-id) = af812eb867b8c25dd20cf753572a43a2ed8f0906 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(aarch-64) = 5.1.0-2.fc40 Processing files: python3-bout++-openmpi-debuginfo-5.1.0-2.fc40.aarch64 Provides: debuginfo(build-id) = 882dda0bb83885729a1bf10e7ed2d11872bce7e8 python-bout++-openmpi-debuginfo = 5.1.0-2.fc40 python3-bout++-openmpi-debuginfo = 5.1.0-2.fc40 python3-bout++-openmpi-debuginfo(aarch-64) = 5.1.0-2.fc40 python3.12-bout++-openmpi-debuginfo = 5.1.0-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(aarch-64) = 5.1.0-2.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 Wrote: /builddir/build/RPMS/bout++-debugsource-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-debuginfo-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-doc-5.1.0-2.fc40.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-devel-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-devel-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-common-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-bout++-5.1.0-2.fc40.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-5.1.0-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-5.1.0-2.fc40.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.aW4kuX + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v5.1.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-2.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.4ZzcVC + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS + rm -rf BOUT++-v5.1.0 BOUT++-v5.1.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bout++-5.1.0-2.fc40.src.rpm Finish: build phase for bout++-5.1.0-2.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1698603421.428792/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bout++-5.1.0-2.fc40.src.rpm) Config(child) 33 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "bout++-common", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-debugsource", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-mpich-debuginfo", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-openmpi-debuginfo", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "src" }, { "name": "bout++-openmpi", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-openmpi-devel", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "python3-bout++-openmpi-debuginfo", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-debuginfo", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-mpich-devel", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "python3-bout++-openmpi", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "python3-bout++-mpich", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "python3-bout++", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "noarch" }, { "name": "python3-bout++-mpich-debuginfo", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-mpich", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "aarch64" }, { "name": "bout++-doc", "epoch": null, "version": "5.1.0", "release": "2.fc40", "arch": "noarch" } ] } RPMResults finished