Mock Version: 1.2.17 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'], chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2550/root'uid=1001env={'LANG': 'en_US.UTF-8', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135timeout=0printOutput=Falseuser='mockbuild'logger=shell=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'] with env {'LANG': 'en_US.UTF-8', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 warning: Could not canonicalize hostname: copr-builder-791980081.novalocal Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/pymol-1.8-4.20151208svn4142.el7.centos.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'], chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2550/root'uid=1001private_network=Truegid=135user='mockbuild'printOutput=Falsetimeout=0logger=env={'LANG': 'en_US.UTF-8', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock'}shell=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'] with env {'LANG': 'en_US.UTF-8', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xNGE7K + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pymol-1.8 + /usr/bin/xz -dc /builddir/build/SOURCES/pymol-1.8-20151208svn4142.tar.xz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd pymol-1.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (pymol-setup.py.patch):' Patch #0 (pymol-setup.py.patch): + /usr/bin/cat /builddir/build/SOURCES/pymol-setup.py.patch + /usr/bin/patch -p0 --fuzz=0 patching file setup.py Hunk #1 succeeded at 256 (offset -4 lines). + echo 'Patch #1 (pymol-wmclass-main.patch):' Patch #1 (pymol-wmclass-main.patch): + /usr/bin/cat /builddir/build/SOURCES/pymol-wmclass-main.patch + /usr/bin/patch -p0 --fuzz=0 patching file layer5/main.cpp + echo 'Patch #2 (pymol-wmclass-pmgapp.patch):' Patch #2 (pymol-wmclass-pmgapp.patch): + /usr/bin/cat /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch + /usr/bin/patch -p0 --fuzz=0 patching file modules/pmg_tk/PMGApp.py Hunk #1 succeeded at 318 (offset -2 lines). + mv modules/web modules/pymol_web + sed -i 1d modules/pmg_tk/startup/apbs_tools.py + chmod 644 data/xray/atomformfactor2.dat data/xray/atomformfactor5.dat data/xray/spgbase.dat + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bjHVzi + umask 022 + cd /builddir/build/BUILD + cd pymol-1.8 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + /usr/bin/python -c 'import setuptools; execfile("setup.py")' build numpy not available running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/pymol_web creating build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pymol_web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pymol_web/examples/__init__.py -> build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol_web/__init__.py -> build/lib.linux-x86_64-2.7/pymol_web copying modules/pymol_web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/pymol_web creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/morphing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-x86_64-2.7/layer0/os_gl.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-x86_64-2.7/layer0/Triangle.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-x86_64-2.7/layer0/Util2.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-x86_64-2.7/layer0/Texture.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-x86_64-2.7/layer0/Debug.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-x86_64-2.7/layer0/Map.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-x86_64-2.7/layer0/File.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-x86_64-2.7/layer0/Deferred.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-x86_64-2.7/layer0/Field.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-x86_64-2.7/layer0/Util.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-x86_64-2.7/layer0/Feedback.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-x86_64-2.7/layer0/Crystal.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-x86_64-2.7/layer0/Block.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-x86_64-2.7/layer0/Err.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-x86_64-2.7/layer0/Tracker.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-x86_64-2.7/layer1/Pop.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-x86_64-2.7/layer1/Wizard.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-x86_64-2.7/layer0/Match.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-x86_64-2.7/layer1/Extrude.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-x86_64-2.7/layer0/Vector.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-x86_64-2.7/layer0/Matrix.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-x86_64-2.7/layer1/Basis.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-x86_64-2.7/layer0/Parse.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-x86_64-2.7/layer0/Word.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-x86_64-2.7/layer1/FontType.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-x86_64-2.7/layer1/View.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-x86_64-2.7/layer0/Queue.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-x86_64-2.7/layer0/Sphere.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Raw.cpp -o build/temp.linux-x86_64-2.7/layer0/Raw.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-x86_64-2.7/layer1/Setting.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-x86_64-2.7/layer1/Movie.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-x86_64-2.7/layer1/Rep.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-x86_64-2.7/layer1/Ray.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-x86_64-2.7/layer1/Ortho.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-x86_64-2.7/layer1/Character.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-x86_64-2.7/layer2/VFont.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-x86_64-2.7/layer1/P.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-x86_64-2.7/layer1/COLLADA.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-x86_64-2.7/layer1/Font.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-x86_64-2.7/layer1/Control.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-x86_64-2.7/layer1/Text.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-x86_64-2.7/layer2/DistSet.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-x86_64-2.7/layer1/ButMode.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-x86_64-2.7/layer1/CGO.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-x86_64-2.7/layer1/Shaker.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-x86_64-2.7/layer1/Color.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-x86_64-2.7/layer1/PConv.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-x86_64-2.7/layer1/Seq.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-x86_64-2.7/layer1/Scene.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDot.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-x86_64-2.7/layer4/PopUp.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-x86_64-2.7/layer4/Menu.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-x86_64-2.7/layer5/main.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-x86_64-2.7/layer2/CifFile.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:37: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:48: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:40: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:47: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:39: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:652:19: warning: variable 'atomname' set but not used [-Wunused-but-set-variable] const char *atomname; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c: In function 'write_crd_timestep': contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c:167:6: warning: 'lfdone' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!lfdone) ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-x86_64-2.7/layer3/Seeker.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:585:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'get_basis': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-x86_64-2.7/layer3/Selector.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1101:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2258:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3561:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-x86_64-2.7/layer3/Executive.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:65: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:65: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-x86_64-2.7/layer3/Editor.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:43:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but not for C [enabled by default] contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: In function 'read_js_structure': contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] fio_size_t bszmask; ^ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-x86_64-2.7/layer3/MovieScene.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-x86_64-2.7/layer4/Export.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-x86_64-2.7/layer4/Cmd.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -std=c++11 g++ -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/layer0/Util2.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/Raw.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/File.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/COLLADA.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/CifFile.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o build/temp.linux-x86_64-2.7/layer3/MovieScene.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lxml2 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython2.7 -o build/lib.linux-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:65:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:146:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:159:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic build/temp.linux-x86_64-2.7/contrib/champ/chiral.o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o build/temp.linux-x86_64-2.7/contrib/champ/err2.o build/temp.linux-x86_64-2.7/contrib/champ/list.o build/temp.linux-x86_64-2.7/contrib/champ/vla.o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o build/temp.linux-x86_64-2.7/contrib/champ/sort.o build/temp.linux-x86_64-2.7/contrib/champ/champ.o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/chempy/champ/_champ.so + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.lulkgb + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 ++ dirname /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 + cd pymol-1.8 + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 + /usr/bin/python -c 'import setuptools; execfile("setup.py")' install --skip-build --root /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 numpy not available running install running install_lib creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7 creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol2 creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web copying build/lib.linux-x86_64-2.7/pymol_web/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web copying build/lib.linux-x86_64-2.7/pymol_web/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples copying build/lib.linux-x86_64-2.7/pymol_web/examples/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples copying build/lib.linux-x86_64-2.7/pymol_web/examples/justhttpd.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_wx copying build/lib.linux-x86_64-2.7/pmg_wx/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_wx creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.linux-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/models.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cex.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/map.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/place.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/io.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/_champ.so -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments copying build/lib.linux-x86_64-2.7/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/fast copying build/lib.linux-x86_64-2.7/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/fast creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/_cmd.so -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/fedora.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/util.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/api.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/m4x.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib copying build/lib.linux-x86_64-2.7/pymol/contrib/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl copying build/lib.linux-x86_64-2.7/pymol/opengl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-x86_64-2.7/pymol/opengl/gl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut copying build/lib.linux-x86_64-2.7/pymol/opengl/glut/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu copying build/lib.linux-x86_64-2.7/pymol/opengl/glu/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-x86_64-2.7/pymol/embed/epymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/pymolhttpd.py to pymolhttpd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples/justhttpd.py to justhttpd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling 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/builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/morphing.py to morphing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing top-level names to pymol.egg-info/top_level.txt writing dependency_links to pymol.egg-info/dependency_links.txt writing manifest file 'pymol.egg-info/SOURCES.txt' warning: manifest_maker: standard file '-c' not found reading manifest file 'pymol.egg-info/SOURCES.txt' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol-1.8.0.0-py2.7.egg-info creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path copying data -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/data copying test -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples creating /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/bin + echo '#!/bin/sh' + echo 'export PYMOL_PATH=/usr/lib64/python2.7/site-packages/pymol' + echo '/usr/bin/python /usr/lib64/python2.7/site-packages/pymol/__init__.py "$@"' + cp -pr data examples test scripts /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/test/ref/T01.log + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/T01.log + mkdir -p /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/bin + install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/bin/ + desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop + mkdir -p /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/pixmaps + install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/pixmaps/ + mkdir -p /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/appdata + install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/appdata/ + appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64//usr/share/appdata/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64//usr/share/appdata/pymol.appdata.xml: GLib-GIO-Message: Using the 'memory' GSettings backend. Your settings will not be saved or shared with other applications. OK + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/pymol-1.8 extracting debug info from /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/pymol/_cmd.so extracting debug info from /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/_champ.so /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 1884 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: pymol-1.8-4.20151208svn4142.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Jvbrfk + umask 022 + cd /builddir/build/BUILD + cd pymol-1.8 + DOCDIR=/builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/doc/pymol-1.8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/doc/pymol-1.8 + cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/doc/pymol-1.8 + cp -pr LICENSE /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/doc/pymol-1.8 + cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/doc/pymol-1.8 + cp -pr README /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64/usr/share/doc/pymol-1.8 + exit 0 Provides: appdata() appdata(pymol.appdata.xml) application() application(pymol.desktop) pymol = 1.8-4.20151208svn4142.el7.centos pymol(x86-64) = 1.8-4.20151208svn4142.el7.centos Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires: /bin/csh /bin/sh /usr/bin/python libGL.so.1()(64bit) libGLEW.so.1.10()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 2.7 rtld(GNU_HASH) Processing files: pymol-wxpython-1.8-4.20151208svn4142.el7.centos.x86_64 Provides: pymol-wxpython = 1.8-4.20151208svn4142.el7.centos pymol-wxpython(x86-64) = 1.8-4.20151208svn4142.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 2.7 Processing files: pymol-debuginfo-1.8-4.20151208svn4142.el7.centos.x86_64 Provides: pymol-debuginfo = 1.8-4.20151208svn4142.el7.centos pymol-debuginfo(x86-64) = 1.8-4.20151208svn4142.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 Wrote: /builddir/build/RPMS/pymol-1.8-4.20151208svn4142.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/pymol-wxpython-1.8-4.20151208svn4142.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/pymol-debuginfo-1.8-4.20151208svn4142.el7.centos.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Xzr9cZ + umask 022 + cd /builddir/build/BUILD + cd pymol-1.8 + rm -rf /builddir/build/BUILDROOT/pymol-1.8-4.20151208svn4142.el7.centos.x86_64 + exit 0 Child return code was: 0