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MapAlignmentAlgorithmIdentification Member List

This is the complete list of members for MapAlignmentAlgorithmIdentification, including all inherited members.

alignCompactFeatureMaps(std::vector< std::vector< Peak2D > > &, std::vector< TransformationDescription > &)MapAlignmentAlgorithmvirtual
alignConsensusMaps(std::vector< ConsensusMap > &, std::vector< TransformationDescription > &)MapAlignmentAlgorithmIdentificationvirtual
alignFeatureMaps(std::vector< FeatureMap > &, std::vector< TransformationDescription > &)MapAlignmentAlgorithmIdentificationvirtual
alignMaps(std::vector< MapType > &maps, std::vector< TransformationDescription > &transformations)MapAlignmentAlgorithmIdentificationinline
alignPeakMaps(std::vector< MSExperiment<> > &, std::vector< TransformationDescription > &)MapAlignmentAlgorithmIdentificationvirtual
alignPeptideIdentifications(std::vector< std::vector< PeptideIdentification > > &, std::vector< TransformationDescription > &)MapAlignmentAlgorithmIdentificationvirtual
check_defaults_DefaultParamHandlerprotected
checkParameters_(const Size runs)MapAlignmentAlgorithmIdentificationprotected
CMD enum valueProgressLogger
computeMedians_(SeqToList &rt_data, SeqToValue &medians, bool sorted=false)MapAlignmentAlgorithmIdentificationprotected
computeTransformations_(std::vector< SeqToList > &rt_data, std::vector< TransformationDescription > &transforms, bool sorted=false)MapAlignmentAlgorithmIdentificationprotected
create()MapAlignmentAlgorithmIdentificationinlinestatic
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
fitModel(const String &model_type, const Param &params, std::vector< TransformationDescription > &trafos)MapAlignmentAlgorithmstatic
getDefaults() const DefaultParamHandler
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getProductName()MapAlignmentAlgorithmIdentificationinlinestatic
getReference_()MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(std::vector< PeptideIdentification > &peptides, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(MSExperiment<> &experiment, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(MapType &features, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationprotected
getSubsections() const DefaultParamHandler
GUI enum valueProgressLogger
hasGoodHit_(PeptideIdentification &peptide)MapAlignmentAlgorithmIdentificationprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MapAlignmentAlgorithm()MapAlignmentAlgorithm
MapAlignmentAlgorithmIdentification()MapAlignmentAlgorithmIdentification
MapAlignmentAlgorithmIdentification(const MapAlignmentAlgorithmIdentification &)MapAlignmentAlgorithmIdentificationprivate
min_run_occur_MapAlignmentAlgorithmIdentificationprotected
NONE enum valueProgressLogger
operator=(const MapAlignmentAlgorithmIdentification &)MapAlignmentAlgorithmIdentificationprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
reference_MapAlignmentAlgorithmIdentificationprotected
reference_index_MapAlignmentAlgorithmIdentificationprotected
registerChildren()MapAlignmentAlgorithmstatic
score_threshold_MapAlignmentAlgorithmIdentificationprotected
SeqToList typedefMapAlignmentAlgorithmIdentificationprotected
SeqToValue typedefMapAlignmentAlgorithmIdentificationprotected
setLogType(LogType type) const ProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
setReference(Size reference_index=0, const String &reference_file="")MapAlignmentAlgorithmIdentificationvirtual
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~MapAlignmentAlgorithm()MapAlignmentAlgorithmvirtual
~MapAlignmentAlgorithmIdentification()MapAlignmentAlgorithmIdentificationvirtual
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 16:18:44 using doxygen 1.8.5