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MRMFeatureFinderScoring Member List

This is the complete list of members for MRMFeatureFinderScoring, including all inherited members.

add_up_spectra_MRMFeatureFinderScoringprivate
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
diascoring_MRMFeatureFinderScoringprivate
emgscoring_MRMFeatureFinderScoringprivate
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
getDefaults() const DefaultParamHandler
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
GUI enum valueProgressLogger
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
mapExperimentToTransitionList(OpenSwath::SpectrumAccessPtr input, OpenSwath::LightTargetedExperiment &transition_exp, TransitionGroupMapType &transition_group_map, TransformationDescription trafo, double rt_extraction_window)MRMFeatureFinderScoring
ModificationType typedefMRMFeatureFinderScoring
MRMFeatureFinderScoring()MRMFeatureFinderScoring
MRMTransitionGroupType typedefMRMFeatureFinderScoring
ms1_map_MRMFeatureFinderScoringprivate
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PeptideRefMap_MRMFeatureFinderScoringprivate
PeptideType typedefMRMFeatureFinderScoring
pickExperiment(MSExperiment< Peak1D > &chromatograms, FeatureMap &output, TargetedExperiment &transition_exp, TransformationDescription trafo, MSExperiment< Peak1D > &swath_map)MRMFeatureFinderScoring
pickExperiment(OpenSwath::SpectrumAccessPtr input, FeatureMap &output, OpenSwath::LightTargetedExperiment &transition_exp, TransformationDescription trafo, OpenSwath::SpectrumAccessPtr swath_map, TransitionGroupMapType &transition_group_map)MRMFeatureFinderScoring
prepareProteinPeptideMaps_(OpenSwath::LightTargetedExperiment &transition_exp)MRMFeatureFinderScoring
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
ProteinType typedefMRMFeatureFinderScoring
quantification_cutoff_MRMFeatureFinderScoringprivate
recursion_depth_ProgressLoggerprotectedstatic
RichPeakChromatogram typedefMRMFeatureFinderScoring
rt_extraction_window_MRMFeatureFinderScoringprivate
rt_normalization_factor_MRMFeatureFinderScoringprivate
scorePeakgroups(MRMTransitionGroupType &transition_group, TransformationDescription &trafo, OpenSwath::SpectrumAccessPtr swath_map, FeatureMap &output)MRMFeatureFinderScoring
setLogType(LogType type) const ProgressLogger
setMS1Map(OpenSwath::SpectrumAccessPtr ms1_map)MRMFeatureFinderScoringinline
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
setStrictFlag(bool f)MRMFeatureFinderScoringinline
spacing_for_spectra_resampling_MRMFeatureFinderScoringprivate
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_report_after_feature_MRMFeatureFinderScoringprivate
strict_MRMFeatureFinderScoringprivate
su_MRMFeatureFinderScoringprivate
subsections_DefaultParamHandlerprotected
TargetedExpType typedefMRMFeatureFinderScoring
TransitionGroupMapType typedefMRMFeatureFinderScoring
TransitionType typedefMRMFeatureFinderScoring
type_ProgressLoggermutableprotected
updateMembers_()MRMFeatureFinderScoringprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
write_convex_hull_MRMFeatureFinderScoringprivate
~DefaultParamHandler()DefaultParamHandlervirtual
~MRMFeatureFinderScoring()MRMFeatureFinderScoring
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 16:18:44 using doxygen 1.8.5