Extracts scans of an mzML file to several files in DTA format.
pot. predecessor tools | ![]() ![]() | pot. successor tools |
any signal-/preprocessing tool | - |
The retention time, the m/z ratio (for MS level > 1) and the file extension are appended to the output file name. You can limit the exported spectra by m/z range, retention time range or MS level.
The command line parameters of this tool are:
DTAExtractor -- Extracts spectra of an MS run file to several files in DTA format. Version: 2.0.0 Mar 30 2016, 12:52:33, Revision: GIT-NOTFOUND Usage: DTAExtractor <options> Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Base name of DTA output files (RT, m/z and extension are appended) -mz [min]:[max] M/z range of precursor peaks to extract. This option is ignored for MS level 1 (default: ':') -rt [min]:[max] Retention time range of spectra to extract (default: ':') -level i[,j]... MS levels to extract (default: '1,2,3') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.0.0 | Documentation generated on Wed Mar 30 2016 16:18:43 using doxygen 1.8.5 |