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O18Labeler() :
O18Labeler
OfflinePrecursorIonSelection() :
OfflinePrecursorIonSelection
ok() :
BSpline2d
,
FuzzyStringComparator::InputLine
ok_() :
ToolsDialog
,
TOPPASToolConfigDialog
OMSSACSVFile() :
OMSSACSVFile
OMSSAXMLFile() :
OMSSAXMLFile
OnDiscMSExperiment() :
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
one_minus_sum_post() :
PosteriorErrorProbabilityModel
op_changed_() :
DataFilterDialog
open() :
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
,
Bzip2Ifstream
,
GzipIfstream
,
SuffixArray
openAsNewWindow() :
TOPPViewOpenDialog
openContainingFolder() :
TOPPASInputFileListVertex
,
TOPPASOutputFileListVertex
,
TOPPASToolVertex
openExampleDialog() :
TOPPASBase
,
TOPPViewBase
openFile() :
IndexedMzMLFile
,
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
,
INIFileEditorWindow
openFileDialog() :
IDEvaluationBase
,
TOPPASBase
,
TOPPViewBase
openFilesInTOPPView() :
TOPPASBase
openglwidget() :
Spectrum3DCanvas
openInputFileStream_() :
FuzzyStringComparator
openInTOPPView() :
TOPPASScene
,
TOPPASToolVertex
OpenMSLineEdit() :
OpenMSLineEdit
OpenMSOSInfo() :
OpenMSOSInfo
openOnlinePipelineRepository() :
TOPPASBase
openPreferences() :
SpectrumWidget
openRecentFile() :
TOPPViewBase
OpenSwath_Scores() :
OpenSwath_Scores
OpenSwath_Scores_Usage() :
OpenSwath_Scores_Usage
OpenSwathScoring() :
OpenSwathScoring
OpenSwathTSVWriter() :
OpenSwathTSVWriter
OpenSwathWorkflow() :
OpenSwathWorkflow
openToppasFile() :
TOPPASBase
operator double() :
DataValue
,
SparseVector< Value >::ValueProxy
operator DoubleList() :
DataValue
operator float() :
DataValue
,
SparseVector< Value >::ValueProxy
operator int() :
DataValue
,
SparseVector< Value >::ValueProxy
operator IntList() :
DataValue
operator long double() :
DataValue
operator long int() :
DataValue
operator long long() :
DataValue
operator short int() :
DataValue
operator std::string() :
DataValue
operator StringList() :
DataValue
operator unsigned int() :
DataValue
operator unsigned long int() :
DataValue
operator unsigned long long() :
DataValue
operator unsigned short int() :
DataValue
operator!=() :
DocumentIDTagger
,
ExperimentalSettings
,
Gradient
,
HPLC
,
ReactionMonitoringTransition
,
Identification
,
IdentificationHit
,
IncludeExcludeTarget
,
Instrument
,
InstrumentSettings
,
TargetedExperiment
,
IonDetector
,
IonSource
,
AASequence::ConstIterator
,
MassAnalyzer
,
MetaInfo
,
AASequence::Iterator
,
MetaInfoInterface
,
MSQuantifications
,
AASequence
,
PeptideEvidence
,
PeptideHit
,
Element
,
PeptideIdentification
,
Precursor
,
EmpiricalFormula
,
Product
,
ProteinHit
,
IsotopeDistribution
,
ProteinIdentification::SearchParameters
,
ProteinIdentification
,
IMSElement
,
ScanWindow
,
Software
,
IMSIsotopeDistribution
,
SourceFile
,
SpectrumIdentification
,
ModificationDefinition
,
SpectrumSettings
,
StopWatch
,
ModificationDefinitionsSet
,
ModelDescription< D >
,
PeakShape
,
Residue
,
FoundProteinFunctor
,
Residue
,
ResidueModification
,
HashGrid< Cluster >::Iterator
,
HashGrid< Cluster >::ConstIterator
,
BinnedSpectrum
,
ChargePair
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >
,
CVMappingRule
,
CVMappings
,
CVMappingTerm
,
CVReference
,
DIntervalBase< D >
,
DPosition< D, TCoordinateType >
,
Param::ParamIterator
,
SparseVector< Value >::ValueProxy
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
SparseVector< Value >::SparseVectorConstReverseIterator
,
IntensityIteratorWrapper< IteratorT >
,
DataFilters::DataFilter
,
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
,
BaseFeature
,
ChromatogramPeak
,
ConsensusMap
,
FeatureHandle
,
FeatureMap
,
MSChromatogram< PeakT >
,
MSExperiment< PeakT, ChromatogramPeakT >
,
MSSpectrum< PeakT >
,
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
,
Peak1D
,
Peak2D
,
PeakIndex
,
RangeManager< D >
,
RichPeak1D
,
RichPeak2D
,
Histogram< ValueType, BinSizeType >
,
Acquisition
,
AcquisitionInfo
,
ChromatogramSettings
,
ContactPerson
,
CVTerm::Unit
,
CVTerm
,
CVTermList
,
DataProcessing
operator()() :
Peak1D::IntensityLess
,
Peak1D::MZLess
,
Peak1D::PositionLess
,
Peak2D::IntensityLess
,
Peak2D::RTLess
,
Peak2D::MZLess
,
Peak2D::PositionLess
,
HasMetaValue< MetaContainer >
,
InRTRange< SpectrumType >
,
InMSLevelRange< SpectrumType >
,
HasScanMode< SpectrumType >
,
HasScanPolarity< SpectrumType >
,
IsEmptySpectrum< SpectrumType >
,
IsZoomSpectrum< SpectrumType >
,
HasActivationMethod< SpectrumType >
,
InPrecursorMZRange< SpectrumType >
,
HasPrecursorCharge< SpectrumType >
,
InMzRange< PeakType >
,
InIntensityRange< PeakType >
,
IsInCollisionEnergyRange< SpectrumType >
,
IsInIsolationWindowSizeRange< SpectrumType >
,
ROCCurve::simsortdec
,
PeptideHit::ScoreMore
,
PeptideHit::ScoreLess
,
ProteinHit::ScoreMore
,
ProteinHit::ScoreLess
,
EGHFitter1D::EGHFitterFunctor
,
EGHTraceFitter::EGHTraceFunctor
,
EmgFitter1D::EgmFitterFunctor
,
IntensityLess< FeaFiModuleType >
,
GaussTraceFitter::GaussTraceFunctor
,
LevMarqFitter1D::GenericFunctor
,
MultiplexClustering::MultiplexDistance
,
TraceFitter::GenericFunctor
,
OptimizePick::OptPeakFunctor
,
PeakShape
,
PeakShape::PositionLess
,
TwoDOptimization::TwoDOptFunctor
,
LCMS::OPERATOR_MZ
,
LCMS::OPERATOR_FeatureCompare
,
MS1FeatureMerger::OPERATOR_FEATURE_TR
,
FoundProteinFunctor
,
SimpleSearchEngine::HasInvalidPeptideLengthPredicate
,
mySqrt
,
mean_and_stddev
,
AccurateMassSearchEngine::CompareEntryAndMass_
,
PrecursorMassComparator
,
SpectralMatchScoreComparator
,
FeatureDistance
,
MapAlignmentAlgorithmSpectrumAlignment::Compare
,
ReactionMonitoringTransition::ProductMZLess
,
DiaPrescore
,
InclusionExclusionList::WindowDistance_
,
PrecursorIonSelection::TotalScoreMore
,
PrecursorIonSelection::SeqTotalScoreMore
,
PSLPFormulation::IndexLess
,
PSLPFormulation::ScanLess
,
PSLPFormulation::VariableIndexLess
,
IMSAlphabet::MassSortingCriteria_
,
AverageLinkage
,
ClusterFunctor
,
CompleteLinkage
,
EuclideanSimilarity
,
SingleLinkage
,
BinnedSharedPeakCount
,
BinnedSpectralContrastAngle
,
BinnedSpectrumCompareFunctor
,
BinnedSumAgreeingIntensities
,
PeakAlignment
,
PeakSpectrumCompareFunctor
,
SpectraSTSimilarityScore
,
SpectrumAlignmentScore
,
SpectrumCheapDPCorr
,
SpectrumPrecursorComparator
,
SteinScottImproveScore
,
ZhangSimilarityScore
,
BinaryComposeFunctionAdapter< OP1, OP2, OP3 >
,
UnaryComposeFunctionAdapter< OP1, OP2 >
,
DistanceMatrix< Value >
,
ListUtils::DoubleTolerancePredicate_
,
Matrix< Value >
,
FloatsWithTolLess
,
IntsInRangeLess
,
CmpMassTraceByMZ
,
CmpHypothesesByScore
,
SpectraMerger::SpectraDistance_
,
BaseFeature::QualityLess
,
ChromatogramPeak::IntensityLess
,
ChromatogramPeak::RTLess
,
ChromatogramPeak::PositionLess
,
PointerComparator< Cmp >
,
ReverseComparator< Cmp >
,
LexicographicComparator< Cmp1, Cmp2 >
,
PairComparatorFirstElement< PairType >
,
PairComparatorSecondElement< PairType >
,
PairComparatorFirstElementMore< PairType >
,
PairComparatorSecondElementMore< PairType >
,
PairMatcherFirstElement< PairType >
,
PairMatcherSecondElement< PairType >
,
EqualInTolerance< CompareType >
,
ConsensusFeature::SizeLess
,
ConsensusFeature::MapsLess
,
FeatureHandle::IndexLess
,
MSChromatogram< PeakT >::MZLess
,
MSSpectrum< PeakT >::RTLess
,
Peak1D::IntensityLess
operator*() :
AASequence::ConstIterator
,
AASequence::Iterator
,
EdwardsLippertIterator
,
EmpiricalFormula
,
IsotopeDistribution
,
PepIterator
,
TrypticIterator
,
HashGrid< Cluster >::Iterator
,
HashGrid< Cluster >::ConstIterator
,
Adduct
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
DPosition< D, TCoordinateType >
,
Param::ParamIterator
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
SparseVector< Value >::SparseVectorConstReverseIterator
,
IntensityIteratorWrapper< IteratorT >
,
FastaIterator
,
FastaIteratorIntern
,
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
,
IntensityIterator< FeaFiModuleType >
,
MzIterator< FeaFiModuleType >
,
RtIterator< FeaFiModuleType >
operator*=() :
IsotopeDistribution
,
IMSIsotopeDistribution
,
DPosition< D, TCoordinateType >
operator+() :
TargetedExperiment
,
AASequence::ConstIterator
,
AASequence::Iterator
,
AASequence
,
EmpiricalFormula
,
IsotopeDistribution
,
MassDecomposition
,
Adduct
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
String
,
FeatureMap
operator++() :
AASequence::ConstIterator
,
AASequence::Iterator
,
EdwardsLippertIterator
,
PepIterator
,
TrypticIterator
,
HashGrid< Cluster >::Iterator
,
HashGrid< Cluster >::ConstIterator
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
Param::ParamIterator
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
SparseVector< Value >::SparseVectorConstReverseIterator
,
IntensityIteratorWrapper< IteratorT >
,
FastaIterator
,
FastaIteratorIntern
,
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
operator+=() :
TargetedExperiment
,
AASequence
,
EmpiricalFormula
,
IsotopeDistribution
,
MassDecomposition
,
Adduct
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
String
,
ConsensusMap
,
AnnotationStatistics
,
FeatureMap
operator-() :
AASequence::ConstIterator
,
AASequence::Iterator
,
EmpiricalFormula
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
IntensityIteratorWrapper< IteratorT >
operator--() :
AASequence::ConstIterator
,
AASequence::Iterator
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
SparseVector< Value >::SparseVectorConstReverseIterator
operator-=() :
EmpiricalFormula
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
operator->() :
AASequence::ConstIterator
,
AASequence::Iterator
,
HashGrid< Cluster >::Iterator
,
HashGrid< Cluster >::ConstIterator
,
LogStream
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
,
Param::ParamIterator
,
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
operator/=() :
DPosition< D, TCoordinateType >
operator<() :
ToolDescriptionInternal
,
QcMLFile::QualityParameter
,
QcMLFile::Attachment
,
ProteinIdentification::ProteinGroup
,
StopWatch
,
FeatureFinderAlgorithmPickedHelperStructs::Seed
,
BackgroundControl
,
CentroidPeak
,
ClusteredMS2ConsensusSpectrum
,
ConsensusIsotopePattern
,
FeatureLCProfile
,
FTPeakDetectController
,
LCElutionPeak
,
MS2ConsensusSpectrum
,
MS2Feature
,
MS2Fragment
,
MS2Info
,
MSPeak
,
ProcessData
,
TOPPASToolVertex::IOInfo
,
PeptideProteinMatchInformation
,
PILISCrossValidation::Peptide
,
AASequence
,
EnzymaticDigestion::BindingSite
,
MassDecomposition
,
ModificationDefinition
,
SvmTheoreticalSpectrumGenerator::IonType
,
GridBasedCluster
,
MinimumDistance
,
VersionInfo::VersionDetails
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >
,
DPosition< D, TCoordinateType >
,
Matrix< Value >
,
QTCluster
,
SparseVector< Value >
,
SparseVector< Value >::ValueProxy
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
operator<<() :
SVOutStream
,
TextFile
,
DBoundingBox< D >
,
DistanceMatrix< Value >
,
Matrix< Value >
operator<=() :
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConstRefVector< ContainerT >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::ValueProxy
,
SparseVector< Value >::SparseVectorIterator
,
SparseVector< Value >::SparseVectorReverseIterator
,
SparseVector< Value >::SparseVectorConstIterator
,
StopWatch
,
BackgroundControl
,
ClusteredMS2ConsensusSpectrum
,
ConsensusIsotopePattern
,
FeatureLCProfile
,
FTPeakDetectController
,
LCElutionPeak
,
MS2ConsensusSpectrum
,
MS2Feature
,
MS2Fragment
,
MS2Info
,
MSPeak
,
ProcessData
operator=() :
Residue
,
ModificationDefinitionsSet
,
ResidueModification
,
MassDecompositionAlgorithm
,
FeaFiModule< PeakType >
,
Weights
,
LinearRegression
,
IMSElement
,
DataValue
,
EnzymaticDigestion
,
DBoundingBox< D >
,
DateTime
,
DataValue
,
EdwardsLippertIteratorTryptic
,
SpectrumAlignmentScore
,
AASequence::Iterator
,
DataValue
,
ParameterInformation
,
DataValue
,
TraMLProduct
,
DataValue
,
Instrument
,
DataValue
,
SpectrumCheapDPCorr
,
LogConfigHandler
,
DataValue
,
SpectrumPrecursorComparator
,
ZhangSimilarityScore
,
AverageLinkage
,
TargetedExperiment
,
SpectraSTSimilarityScore
,
BinnedSpectrumCompareFunctor
,
BinnedSharedPeakCount
,
TMTSixPlexQuantitationMethod
,
BinnedSpectrum
,
ClusterFunctor
,
FeatureDeconvolution
,
ItraqQuantifier
,
CompNovoIdentification
,
CompNovoIdentificationBase
,
CompNovoIdentificationBase::Permut
,
CompNovoIdentificationCID
,
CompNovoIonScoring
,
CompNovoIonScoringBase::IonScore
,
CompNovoIonScoringBase
,
PeakIntensityPredictor
,
CompNovoIonScoringCID
,
DeNovoAlgorithm
,
DeNovoIdentification
,
DIAScoring
,
DeNovoIonScoring::IonScore
,
DeNovoIonScoring
,
DeNovoPostScoring
,
MapAlignmentEvaluationAlgorithmRecall
,
AccurateMassSearchResult
,
ConsensusID
,
FalseDiscoveryRate
,
HMMState
,
HiddenMarkovModel
,
IDDecoyProbability
,
IDDecoyProbability::Transformation_
,
FeatureGroupingAlgorithmUnlabeled
,
IDMapper
,
IDRipper
,
SpectralMatch
,
FeatureGroupingAlgorithm
,
PILISCrossValidation::Peptide
,
PILISCrossValidation::Option
,
PILISCrossValidation
,
ConsensusMapNormalizerAlgorithmMedian
,
PILISIdentification
,
PILISModel
,
PILISModelGenerator
,
PILISNeutralLossModel
,
PILISScoring
,
ProtonDistributionModel
,
BaseGroupFinder
,
BaseSuperimposer
,
ConsensusMapNormalizerAlgorithmQuantile
,
ConsensusMapNormalizerAlgorithmThreshold
,
FeatureDistance
,
FeatureGroupingAlgorithmIdentification
,
FeatureGroupingAlgorithmLabeled
,
FeatureGroupingAlgorithmQT
,
LabeledPairFinder
,
MapAlignmentAlgorithm
,
MapAlignmentAlgorithmIdentification
,
MapAlignmentAlgorithmPoseClustering
,
MapAlignmentAlgorithmSpectrumAlignment
,
MapAlignmentEvaluationAlgorithm
,
MapAlignmentEvaluationAlgorithmPrecision
,
TransformationDescription
,
MRMFragmentSelection
,
ReactionMonitoringTransition
,
MRMTransitionGroupPicker
,
PeakPickerMRM
,
LocalLinearMap
,
IsobaricChannelExtractor
,
IsobaricNormalizer
,
IsobaricQuantifier
,
IsobaricQuantifierStatistics
,
ItraqChannelExtractor
,
ItraqEightPlexQuantitationMethod
,
ItraqFourPlexQuantitationMethod
,
ProteinInference
,
ProteinResolver
,
QuantitativeExperimentalDesign
,
TMTTenPlexQuantitationMethod
,
IncludeExcludeTarget
,
PrecursorIonSelectionPreprocessing
,
PeptideIdentification
,
EGHTraceFitter
,
Configuration
,
Protein
,
RetentionTime
,
Compound
,
Peptide
,
Contact
,
Publication
,
EmgFitter1D
,
ExtendedIsotopeModel
,
Prediction
,
ConsoleUtils
,
EmgModel
,
AASequence::ConstIterator
,
AASequence
,
IonizationSimulation
,
Element
,
ElementDB
,
EmpiricalFormula
,
BiGaussFitter1D
,
IsotopeDistribution
,
IMSIsotopeDistribution
,
RawMSSignalSimulation
,
StopWatch
,
MassDecomposition
,
ModificationDefinition
,
RawTandemMSSignalSimulation
,
ModificationsDB
,
ResidueDB
,
SourceFile
,
SvmTheoreticalSpectrumGenerator::IonType
,
SvmTheoreticalSpectrumGenerator
,
SvmTheoreticalSpectrumGeneratorSet
,
SvmTheoreticalSpectrumGeneratorTrainer
,
EGHFitter1D
,
TheoreticalSpectrumGenerator
,
ClusterAnalyzer
,
SpectrumIdentification
,
CompleteLinkage
,
EuclideanSimilarity
,
SingleLinkage
,
SpectrumSettings
,
BinnedSpectralContrastAngle
,
BinnedSpectrum
,
Product
,
BinnedSumAgreeingIntensities
,
PeakAlignment
,
PeakSpectrumCompareFunctor
,
ScanWindow
,
SpectrumAlignment
,
Software
,
ProteinHit
,
Sample
,
SteinScottImproveScore
,
DataValue
,
FuzzyStringComparator
,
ProteinHit
,
ProgressLogger
,
UniqueIdInterface
,
ROCCurve
,
Modification
,
PeptideHit
,
ChargePair
,
PenaltyFactorsIntensity
,
Compomer
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
ConvexHull2D
,
CVMappingRule
,
CVMappings
,
MSQuantifications::AnalysisSummary
,
PeptideEvidence
,
CVReference
,
DataValue
,
MSQuantifications::Assay
,
DataValue
,
InstrumentSettings
,
MetaInfoDescription
,
DataValue
,
ConsensusIsotopePattern
,
DataValue
,
MetaInfoInterface
,
SHFeature
,
FeatureLCProfile
,
DataValue
,
MetaInfoRegistry
,
LCMS
,
IonDetector
,
MetaInfo
,
BackgroundIntensityBin
,
DataValue
,
IonSource
,
Date
,
MS2Info
,
IsotopeFitter1D
,
DBoundingBox< D >
,
DocumentIdentifier
,
FeatureFinderAlgorithmPicked
,
DefaultParamHandler
,
DIntervalBase< D >
,
DistanceMatrix< Value >
,
BiGaussModel
,
DPosition< D, TCoordinateType >
,
IdentificationHit
,
LCMSCData
,
EGHModel
,
DigestSimulation
,
DRange< D >
,
MassExplainer
,
TOPPASInputFileListVertex
,
SampleTreatment
,
DocumentIDTagger
,
HPLC
,
Precursor
,
TOPPASMergerVertex
,
Param
,
SparseVector< Value >::ValueProxy
,
TOPPASResources
,
ExperimentalSettings
,
SparseVector< Value >::SparseVectorIterator
,
Annotations1DContainer
,
SparseVector< Value >::SparseVectorConstIterator
,
AcquisitionInfo
,
StringListUtils
,
FileMapping
,
Digestion
,
MappingParam
,
DataProcessing
,
ToolDescription
,
Acquisition
,
PosteriorErrorProbabilityModel
,
SignalToNoiseEstimator< Container >
,
ChromatogramSettings
,
BasicStatistics< RealT >
,
CVTerm
,
SignalToNoiseEstimatorMedian< Container >
,
TOPPASToolVertex::IOInfo
,
Peak1D
,
ComplementFilter
,
ContactPerson
,
FilterFunctor
,
MassTrace
,
AnnotationStatistics
,
IntensityBalanceFilter
,
ConsensusFeature
,
ChromatogramPeak
,
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
,
BaseFeature
,
SemanticValidator
,
MzMLValidator
,
MzDataValidator
,
UnimodXMLFile
,
QcMLFile::Attachment
,
PepXMLFile::AminoAcidModification
,
PepNovoOutfile
,
GammaDistributionFitter
,
InspectOutfile
,
IBSpectraFile
,
ToolDescriptionHandler
,
MzIdentMLHandler
,
GzipInputStream
,
FastaIterator
,
ControlledVocabulary::CVTerm
,
IsotopeMarker
,
Bzip2Ifstream
,
TICFilter
,
SqrtMower
,
Scaler
,
MarkerMower
,
NeutralLossDiffFilter
,
NeutralLossMarker
,
NLargest
,
Normalizer
,
ParentPeakMower
,
GaussFitter
,
FeatureFinderAlgorithm
,
GumbelDistributionFitter
,
Peak2D
,
CachedmzML
,
CompressedInputSource
,
LinearInterpolation< Key, Value >
,
RangeManager< D >
,
RichPeak2D
,
RichPeak1D
,
MRMFeature
,
MSPFile
,
OMSSAXMLFile
,
PepNovoInfile
,
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
,
MRMTransitionGroup< SpectrumType, TransitionType >
,
SequestOutfile
,
MSChromatogram< PeakT >
,
ConsensusFeature::Ratio
,
XTandemInfile
,
XTandemXMLFile
,
FeatureMap
,
FeatureHandle
,
Feature
,
ConsensusMap
,
CVMappingFile
,
MzQuantMLValidator
,
MSExperiment< PeakT, ChromatogramPeakT >
,
MSSpectrum< PeakT >
,
SuperHirnParameters
,
RichPeak2D
,
BilinearInterpolation< Key, Value >
,
TraMLValidator
,
QcMLFile::QualityParameter
,
TOPPASToolVertex
,
Histogram< ValueType, BinSizeType >
,
MzIdentMLValidator
,
CVTerm::Unit
,
CVTermList
,
SequestInfile
,
InspectInfile
,
TOPPASOutputFileListVertex
,
Gradient
,
Identification
,
Instrument
,
MassAnalyzer
,
TOPPASResource
,
MascotRemoteQuery
,
GzipIfstream
,
MultiGradient
,
MSQuantifications
,
TraMLHandler
,
MzQuantMLHandler
,
ProteinIdentification
,
MzIdentMLDOMHandler
,
StreamHandler
,
ToolDescriptionInternal
,
WindowMower
,
ProcessData
,
Tagging
,
DetectabilitySimulation
,
TwoDOptimization
,
RTSimulation
,
BaseModel< D >
,
Bzip2InputStream
,
MS2ConsensusSpectrum
,
ExtendedIsotopeFitter1D
,
MSPeak
,
ThresholdMower
,
SpectraMerger
,
GaussTraceFitter
,
PeakMarker
,
GoodDiffFilter
,
FTPeakDetectController
,
TraceFitter
,
OptimizePeakDeconvolution
,
PeakShape
,
DeconvPeak
,
LCElutionPeak
,
IsotopeDiffFilter
,
FeatureHypothesis
,
CentroidPeak
,
MS2Fragment
,
ComplementMarker
,
BernNorm
,
TOPPASEdge
,
SignalToNoiseEstimatorMeanIterative< Container >
,
SparseVector< Value >::SparseVectorReverseIterator
,
PenaltyFactors
,
TOPPASVertex
,
Fitter1D
,
ModelDescription< D >
,
SparseVector< Value >::SparseVectorConstReverseIterator
,
DRange< D >
,
ProductModel< 2 >
,
SparseVector< Value >::ValueProxy
,
SparseVector< Value >
,
Matrix< Value >
,
BinaryTreeNode
,
DataValue
,
IsotopeModel
,
GaussFitter1D
,
DataValue
,
LevMarqFitter1D
,
MaxLikeliFitter1D
,
GaussModel
,
CVMappingTerm
,
InterpolationModel
,
ConstRefVector< ContainerT >
operator==() :
MS2Feature
,
Peptide
,
MassAnalyzer
,
Instrument
,
DIntervalBase< D >
,
HashGrid< Cluster >::ConstIterator
,
GridBasedCluster
,
ChromatogramSettings
,
DefaultParamHandler
,
Peak2D
,
FeatureMap
,
MS2ConsensusSpectrum
,
ModificationDefinitionsSet
,
PepNovoOutfile
,
PeptideIdentification
,
SparseVector< Value >::SparseVectorConstIterator
,
CVMappings
,
MetaInfoInterface
,
MetaInfoDescription
,
ToolDescriptionInternal
,
RangeManager< D >
,
IntensityIteratorWrapper< IteratorT >
,
CVTerm
,
FASTAFile::FASTAEntry
,
Identification
,
MS2Info
,
IdentificationHit
,
ConsensusMap
,
Instrument
,
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
,
UniqueIdInterface
,
ExperimentalSettings
,
Acquisition
,
DBoundingBox< D >
,
CVReference
,
DataProcessing
,
Modification
,
Param::ParamEntry
,
ContactPerson
,
ProteinIdentification::ProteinGroup
,
ProteinIdentification
,
ConvexHull2D
,
Histogram< ValueType, BinSizeType >
,
ConsensusIsotopePattern
,
DistanceMatrix< Value >
,
Software
,
PeakIndex
,
MSExperiment< PeakT, ChromatogramPeakT >
,
Param::ParamNode
,
SparseVector< Value >::ValueProxy
,
MSSpectrum< PeakT >
,
SparseVector< Value >
,
EmpiricalFormula
,
AnnotationStatistics
,
InspectInfile
,
BaseFeature
,
SparseVector< Value >::SparseVectorIterator
,
ChromatogramPeak
,
QcMLFile::QualityParameter
,
SequestInfile
,
InspectOutfile
,
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
,
PepNovoInfile
,
DataFilters::DataFilter
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorReverseIterator
,
Peak1D
,
Param
,
DRange< D >
,
CVMappingRule
,
ClusteredMS2ConsensusSpectrum
,
Digestion
,
RichPeak2D
,
CVMappingTerm
,
EnzymaticDigestion::BindingSite
,
SVMData
,
Element
,
FoundProteinFunctor
,
MS2Fragment
,
ChargePair
,
Prediction
,
Protein
,
Publication
,
Gradient
,
IonSource
,
SampleTreatment
,
CV
,
DocumentIdentifier
,
StopWatch
,
MassDecomposition
,
TargetedExperiment
,
HPLC
,
AASequence::Iterator
,
PeptideHit
,
BinnedSpectrum
,
DocumentIDTagger
,
SequestOutfile
,
InstrumentSettings
,
CVTerm::Unit
,
ProteinIdentification::SearchParameters
,
HashGrid< Cluster >::Iterator
,
Tagging
,
DBoundingBox< D >
,
ProteinHit
,
QcMLFile::Attachment
,
ResidueModification
,
Contact
,
SHFeature
,
BinnedSpectrum
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
Residue
,
PeptideProteinMatchInformation
,
SourceFile
,
IonDetector
,
Sample
,
ScanWindow
,
FeatureLCProfile
,
AASequence
,
PeakShape
,
IMSIsotopeDistribution::Peak
,
IncludeExcludeTarget
,
Precursor
,
SpectrumSettings
,
ConstRefVector< ContainerT >
,
AASequence::ConstIterator
,
Product
,
RetentionTime
,
BackgroundControl
,
TraMLProduct
,
ReactionMonitoringTransition
,
IMSIsotopeDistribution
,
MSQuantifications
,
PeptideEvidence
,
MetaInfo
,
CVTermList
,
MSChromatogram< PeakT >
,
RichPeak1D
,
SpectrumIdentification
,
FeatureHandle
,
ModificationDefinition
,
Feature
,
Compound
,
DRange< D >
,
Residue
,
VersionInfo::VersionDetails
,
IsotopeDistribution
,
IMSElement
,
ModelDescription< D >
,
MinimumDistance
,
Param::ParamIterator
,
Matrix< Value >
,
AcquisitionInfo
operator>() :
SparseVector< Value >::SparseVectorReverseIterator
,
QcMLFile::QualityParameter
,
BackgroundControl
,
QcMLFile::Attachment
,
ClusteredMS2ConsensusSpectrum
,
MS2Feature
,
StopWatch
,
MS2Info
,
SparseVector< Value >::SparseVectorConstIterator
,
MS2Fragment
,
ProcessData
,
LCElutionPeak
,
FTPeakDetectController
,
ConsensusIsotopePattern
,
GridBasedCluster
,
DPosition< D, TCoordinateType >
,
VersionInfo::VersionDetails
,
SparseVector< Value >::SparseVectorIterator
,
MinimumDistance
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
SparseVector< Value >::ValueProxy
,
ConstRefVector< ContainerT >
,
MSPeak
,
FeatureLCProfile
,
MS2ConsensusSpectrum
operator>=() :
LCElutionPeak
,
ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
,
StopWatch
,
ClusteredMS2ConsensusSpectrum
,
MS2Feature
,
MS2ConsensusSpectrum
,
BackgroundControl
,
SparseVector< Value >::SparseVectorReverseIterator
,
MS2Fragment
,
ProcessData
,
MSPeak
,
SparseVector< Value >::ValueProxy
,
ConsensusIsotopePattern
,
FeatureLCProfile
,
MS2Info
,
FTPeakDetectController
,
SparseVector< Value >::SparseVectorIterator
,
ConstRefVector< ContainerT >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorConstIterator
operator[]() :
AASequence
,
Weights
,
Map< Key, T >
,
ContinuousWaveletTransform
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >
,
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
,
IntensityIteratorWrapper< IteratorT >
,
ConstRefVector< ContainerT >
,
AASequence
,
SparseVector< Value >
,
ContinuousWaveletTransform
,
MassTrace
,
SparseVector< Value >::SparseVectorIterator
,
MSExperiment< PeakT, ChromatogramPeakT >
,
Histogram< ValueType, BinSizeType >
,
DPosition< D, TCoordinateType >
,
SparseVector< Value >::SparseVectorReverseIterator
,
MassTrace
,
MSExperiment< PeakT, ChromatogramPeakT >
,
SparseVector< Value >::SparseVectorConstIterator
,
Map< Key, T >
,
DataFilters
optimize() :
OptimizePeakDeconvolution
,
OptimizePick
,
TwoDOptimization
optimize_() :
LevMarqFitter1D
,
TraceFitter
optimizeAnnotations_() :
QTCluster
OptimizePeakDeconvolution() :
OptimizePeakDeconvolution
OptimizePick() :
OptimizePick
optimizeRegions_() :
TwoDOptimization
optimizeRegionsScanwise_() :
TwoDOptimization
Option() :
PILISCrossValidation::Option
optionalAttributeAsDouble_() :
XMLHandler
optionalAttributeAsDoubleList_() :
XMLHandler
optionalAttributeAsInt_() :
XMLHandler
optionalAttributeAsIntList_() :
XMLHandler
optionalAttributeAsString_() :
XMLHandler
optionalAttributeAsStringList_() :
XMLHandler
optionalAttributeAsUInt_() :
XMLHandler
OptPeakFunctor() :
OptimizePick::OptPeakFunctor
order_by_mass() :
LCMS
orderBest_() :
PeptideAndProteinQuant
OSChromatogram() :
OSChromatogram
OSChromatogramMeta() :
OSChromatogramMeta
OSSpectrum() :
OSSpectrum
OSSpectrumMeta() :
OSSpectrumMeta
outEdgeHasChanged() :
TOPPASVertex
,
TOPPASToolVertex
,
TOPPASInputFileListVertex
outEdgesBegin() :
TOPPASVertex
outEdgesEnd() :
TOPPASVertex
outgoingEdgesCount() :
TOPPASVertex
OutOfGrid() :
OutOfGrid
OutOfMemory() :
OutOfMemory
OutOfRange() :
OutOfRange
outputFileWritable_() :
TOPPBase
outputFileWritten() :
TOPPASOutputFileListVertex
outputVertexFinished() :
TOPPASBase
outsideExtractionWindow_() :
ChromatogramExtractor
overflow() :
LogStreamBuf
OpenMS / TOPP release 2.0.0
Documentation generated on Wed Mar 30 2016 16:19:08 using doxygen 1.8.5