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c :
FeatureFinderAlgorithmIsotopeWavelet::BoxElement
,
IsotopeWaveletTransform< PeakType >::BoxElement
c13MassError_ :
DeconvPeak
c1_ :
MapAlignmentAlgorithmSpectrumAlignment
,
BernNorm
c2_ :
BernNorm
c_ :
TOFCalibration
,
CubicSpline2d
,
QuadraticRegression
,
mean_and_stddev
c_mzs_ :
IsotopeWaveletTransform< PeakType >
c_sorted_candidate_ :
IsotopeWaveletTransform< PeakType >
c_spacings_ :
IsotopeWaveletTransform< PeakType >
c_strings_ :
StringManager
c_term_mod_ :
AASequence
C_TERMINAL_AA :
PeptideEvidence
cachedir_ :
CachedSwathFileConsumer
calc_correct_ :
PosteriorErrorProbabilityModel
calc_incorrect_ :
PosteriorErrorProbabilityModel
calc_mass_to_charge :
MzTabPSMSectionRow
,
MzTabSmallMoleculeSectionRow
calculated_mass_to_charge_ :
IdentificationHit
calib_masses_ :
TOFCalibration
calib_peaks_ft_ :
TOFCalibration
CancelButton_ :
ListEditor
cancelbutton_ :
MetaDataBrowser
canvas_ :
LayerStatisticsDialog
,
SpectrumWidget
canvas_3d_ :
Spectrum3DOpenGLCanvas
capacity_ :
ConstRefVector< ContainerT >
CAPTION_3D_SUFFIX_ :
TOPPViewBase
caret_positions_ :
Annotation1DCaret
category :
ToolDescriptionInternal
,
ToolExternalDetails
CE :
TransitionTSVReader::TSVTransition
cell_dimension :
HashGrid< Cluster >
cell_it_ :
HashGrid< Cluster >::Iterator
,
HashGrid< Cluster >::ConstIterator
cell_type :
MzTabSampleMetaData
cells_ :
ClusteringGrid
,
HashGrid< Cluster >
center :
SwathMap
,
IsobaricQuantitationMethod::IsobaricChannelInformation
,
ItraqConstants::ChannelInfo
center_point_ :
QTCluster
centre_ :
GridBasedCluster
centroid_mz_ :
MassTrace
centroid_position :
PeakPickerCWT::PeakArea_
centroid_rt_ :
MassTrace
centroid_sd_ :
MassTrace
centroidDataModus_ :
CentroidData
,
SuperHirnParameters
centroidWindowWidth_ :
SuperHirnParameters
cexp_ :
MzDataHandler< MapType >
,
MzMLHandler< MapType >
,
MzXMLHandler< MapType >
,
TraMLHandler
cf_cf_obj_ :
MzQuantMLHandler
changed_ :
QTCluster
,
TOPPASScene
channel_count :
IsobaricQuantifierStatistics
,
ItraqQuantifier::ItraqQuantifierStats
CHANNEL_COUNT :
ItraqConstants
channel_description_ :
BaseLabeler
channel_id_minus_1 :
IsobaricQuantitationMethod::IsobaricChannelInformation
channel_id_minus_2 :
IsobaricQuantitationMethod::IsobaricChannelInformation
channel_id_plus_1 :
IsobaricQuantitationMethod::IsobaricChannelInformation
channel_id_plus_2 :
IsobaricQuantitationMethod::IsobaricChannelInformation
channel_map_ :
ItraqChannelExtractor
,
ItraqQuantifier
,
ITRAQLabeler
channel_names_ :
TMTTenPlexQuantitationMethod
channels_ :
ItraqEightPlexQuantitationMethod
,
ItraqFourPlexQuantitationMethod
,
TMTSixPlexQuantitationMethod
,
TMTTenPlexQuantitationMethod
CHANNELS_EIGHTPLEX :
ItraqConstants
CHANNELS_FOURPLEX :
ItraqConstants
CHANNELS_TMT_SIXPLEX :
ItraqConstants
char_rest_ :
MzXMLHandler< MapType >::SpectrumData
character_buffer_ :
MascotXMLHandler
charge :
LightTransition
,
LightPeptide
,
Peptide
,
PILISCrossValidation::Peptide
,
SvmTheoreticalSpectrumGenerator::IonType
,
IsotopeCluster::ChargedIndexSet
,
MzTabPeptideSectionRow
,
MzTabPSMSectionRow
,
MzTabSmallMoleculeSectionRow
,
Summary
,
OptimizePeakDeconvolution::Data
,
MS1Signal
,
RNPxlReportRow
charge_ :
AdductInfo
,
AccurateMassSearchResult
,
Peptide
,
TraMLProduct
,
EmpiricalFormula
,
Adduct
,
FeatureHypothesis
,
PepXMLFile
,
BaseFeature
,
FeatureHandle
,
IdentificationHit
,
PeptideHit
,
Precursor
,
ExtendedIsotopeFitter1D
,
ExtendedIsotopeModel
,
IsotopeFitter1D
,
IsotopeModel
,
MultiplexPeakPattern
,
OptimizePeakDeconvolution
,
DeconvPeak
,
PrecursorVisualizer
charge_lower_bound_ :
FeatureFindingMetabo
charge_state :
SHFeature
charge_upper_bound_ :
FeatureFindingMetabo
charges :
ProteinIdentification::SearchParameters
charges_ :
MascotInfile
,
HasPrecursorCharge< SpectrumType >
,
ProteinIdentificationVisualizer
check_defaults_ :
DefaultParamHandler
check_PPMs_ :
FeatureFinderAlgorithmIsotopeWavelet
check_term_value_types_ :
SemanticValidator
check_units_ :
SemanticValidator
check_width_internally_ :
PeakPickerIterative
checked_base_name_ :
PepXMLFile
checksum_ :
SourceFile
,
SourceFileVisualizer
checksum_type_ :
SourceFile
,
SourceFileVisualizer
chemical_formula :
MzTabSmallMoleculeSectionRow
chi_squared_ :
LinearRegression
,
QuadraticRegression
children :
ControlledVocabulary::CVTerm
childScan :
MSPeak
CHRG :
MS2Info
,
MSPeak
CHRG_MAP :
LCElutionPeak
chrom_fwhm_ :
ElutionPeakDetection
,
FeatureFindingMetabo
chrom_index_ :
SpectrumAccessOpenMSCached
,
CachedmzML
chrom_peak_snr_ :
ElutionPeakDetection
,
MassTraceDetection
chromatogram :
MzMLHandler< MapType >::ChromatogramData
chromatogram_ :
SignalToNoiseOpenMS< PeakT >
,
MzMLHandler< MapType >
chromatogram_count :
MzMLHandler< MapType >
chromatogram_data_ :
MzMLHandler< MapType >
chromatogram_map_ :
MRMTransitionGroup< SpectrumType, TransitionType >
ChromatogramNames :
ChromatogramSettings
chromatograms :
LayerData
chromatograms_ :
MRMTransitionGroup< SpectrumType, TransitionType >
,
MSExperiment< PeakT, ChromatogramPeakT >
chromatograms_expected_ :
MSDataWritingConsumer
chromatograms_offsets :
MzMLHandler< MapType >
chromatograms_offsets_ :
IndexedMzMLFile
chromatograms_written_ :
MSDataCachedConsumer
,
MSDataWritingConsumer
cid_ :
MzIdentMLHandler
class_models :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
classification_ :
ResidueModification
clean_all_charge_states_ :
ParentPeakMower
clearbutton_ :
MetaInfoVisualizer
clearData_ :
MSDataCachedConsumer
cleavage_ :
MascotInfile
cleavage_site_ :
XTandemInfile
clipboard_ :
TOPPASScene
clipboard_scene_ :
TOPPASBase
closebutton_ :
MetaDataBrowser
closed_boxes_ :
IsotopeWaveletTransform< PeakType >
cluster_index_ :
MinimumDistance
clusters_ :
GridBasedClustering< Metric >
clusters_final_ :
GridBasedClustering< Metric >
cm_cf_ids_ :
MzQuantMLHandler
cmp1_ :
LexicographicComparator< Cmp1, Cmp2 >
cmp2_ :
LexicographicComparator< Cmp1, Cmp2 >
cmp_ :
Compomer
,
PointerComparator< Cmp >
,
ReverseComparator< Cmp >
cmsq_ :
MzQuantMLHandler
code_ :
LocalLinearMap
coeff_quad_fit_ :
TOFCalibration
coeffs_ :
SavitzkyGolayFilter
,
GaussFilterAlgorithm
colnames_ :
DataMatrix
color_ :
ColorSelector
,
Annotation1DCaret
,
Annotation1DPeakItem
,
TOPPASEdge
cols_ :
Matrix< Value >
colTypes :
QcMLFile::Attachment
column_ :
HPLC
colunit_peptide :
MzTabMetaData
colunit_protein :
MzTabMetaData
colunit_psm :
MzTabMetaData
colunit_small_molecule :
MzTabMetaData
combinations_logic_ :
CVMappingRule
command :
TOPPASScene::TOPPProcess
commandline :
ToolExternalDetails
comment_ :
Sample
,
ChromatogramSettings
,
ExperimentalSettings
,
HPLC
,
MetaInfoDescription
,
SampleTreatment
,
SpectrumSettings
,
ExperimentalSettingsVisualizer
,
SpectrumSettingsVisualizer
comment_rows_ :
MzTab
common_name_ :
SpectralMatch
completion_time_ :
DataProcessingVisualizer
,
DataProcessing
compomer_ :
ChargePair
composition_ :
PTMXMLHandler
compound_ref_ :
IncludeExcludeTarget
,
ReactionMonitoringTransition
compounds_ :
TargetedExperiment
compression :
MzMLHandlerHelper::BinaryData
compressionType_ :
MzXMLHandler< MapType >::SpectrumData
compute_peak_quality_ :
MRMTransitionGroupPicker
concentration_ :
Sample
conditional_prob :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
configuration_list_ :
TraMLProduct
configurations_ :
IncludeExcludeTarget
cons_features_ :
MRMTransitionGroup< SpectrumType, TransitionType >
consensus :
LayerData
consensus_ :
BaseLabeler
consensus_map :
ProteinResolver::ResolverResult
consensus_map_ :
ConsensusXMLFile
,
MSSim
consensus_maps_ :
MSQuantifications
consider_H2O_loss_ :
ParentPeakMower
consider_NH3_loss_ :
ParentPeakMower
console_width_ :
ConsoleUtils
const_modified_residues_ :
ResidueDB
const_residues_ :
ResidueDB
const_weights_ :
SequestOutfile
consumer_ :
MzXMLHandler< MapType >
,
MzMLHandler< MapType >
consumers_ :
MSDataChainingConsumer
consuming_possible_ :
FullSwathFileConsumer
contact :
MzTabMetaData
contact_info_ :
ContactPersonVisualizer
,
ContactPerson
contact_ref :
Prediction
,
Configuration
contacts_ :
ExperimentalSettings
,
TargetedExperiment
contaminants_ :
RawMSSignalSimulation
contaminants_loaded_ :
RawMSSignalSimulation
contaminants_map_ :
MSSim
context_add_ :
SpectrumCanvas
convex_hull_ :
Feature
convex_hulls_ :
Feature
convex_hulls_modified_ :
Feature
cookie_ :
MascotRemoteQuery
coordinate_ :
DPosition< D, TCoordinateType >
cord_ :
LocalLinearMap
corner_ :
Spectrum3DOpenGLCanvas
corr_max :
Summary
corr_mean :
Summary
corr_min :
Summary
correct_window_counter_ :
FullSwathFileConsumer
correctly_assigned_fit_param_ :
PosteriorErrorProbabilityModel
count :
LayerStatisticsDialog::MetaStatsValue_
count_ :
BigString
count_trans_ :
HiddenMarkovModel
count_trans_all_ :
HiddenMarkovModel
counter :
LogStreamBuf::LogCacheStruct
counter_ :
PrecursorIonSelectionPreprocessing
coverage :
ProteinResolver::ProteinEntry
coverage_ :
ProteinHit
cpep_id_ :
MzIdentMLDOMHandler
,
MzIdentMLHandler
cpro_id_ :
MzIdentMLDOMHandler
,
MzIdentMLHandler
cprocessing_ptr_ :
MSDataTransformingConsumer
cpu_speed_ :
StopWatch
create_rows_for_commmon_metavalue_ :
SpectraIdentificationViewWidget
createFeatureElutionProfiles_ :
SuperHirnParameters
creation_date_ :
Identification
curr_region_ :
TwoDOptimization
current_ :
Param::ParamIterator
current_assay_ :
MzQuantMLHandler
current_base_name_ :
PepXMLFile
current_cf_id_ :
MzQuantMLHandler
current_chull_ :
FeatureXMLFile
current_col_types_ :
MzQuantMLHandler
current_count_ :
MzQuantMLHandler
current_dm_values_ :
MzQuantMLHandler
current_dp_ :
MzQuantMLHandler
current_feature_ :
FeatureXMLFile
current_files_ :
MzQuantMLHandler
current_id_ :
MzMLValidator
,
MzQuantMLHandler
,
MzMLHandler< MapType >
current_id_hit_ :
MzIdentMLHandler
current_layer_ :
SpectrumCanvas
current_logger_ :
ProgressLogger
current_mod_location_ :
MzIdentMLHandler
current_modifications_ :
PepXMLFile
current_orderedps_ :
MzQuantMLHandler
current_pas_ :
MzQuantMLHandler
current_path_ :
INIFileEditorWindow
,
IDEvaluationBase
,
TOPPASBase
,
TOPPViewBase
current_peak_ :
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
current_peptide_ :
PepXMLFile
current_proteins_ :
PepXMLFile
current_row_ :
MzQuantMLHandler
current_scan_ :
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
current_secs_ :
StopWatch
current_sequence_ :
PepXMLFile
current_spectrum_ :
LayerData
current_spectrum_id_ :
MzIdentMLHandler
current_sws_ :
MzQuantMLHandler
current_system_time_ :
StopWatch
current_usecs_ :
StopWatch
current_user_time_ :
StopWatch
custom :
MzTabMetaData
,
MzTabSampleMetaData
customizations_ :
Instrument
,
InstrumentVisualizer
cut_off_ :
BaseModel< D >
cutoffScore_ :
MapAlignmentAlgorithmSpectrumAlignment
cv :
MzTabMetaData
cv_ :
MzIdentMLDOMHandler
,
SemanticValidator
,
TraMLHandler
,
MzIdentMLHandler
,
MzMLHandler< MapType >
,
MzQuantMLHandler
cv_identifier_ref_ :
CVMappingTerm
,
CVTerm
CV_label_ :
MzTabParameter
cv_options_ :
PILISCrossValidation
cv_params_ :
MSQuantifications::AnalysisSummary
cv_ref :
CVTerm::Unit
cv_references_ :
CVMappings
,
CVMappingFile
cv_references_vector_ :
CVMappings
cv_tag_ :
SemanticValidator
cv_terms_ :
CVTermList
,
CVMappingRule
,
XMLHandler
cvAcc :
QcMLFile::Attachment
,
QcMLFile::QualityParameter
cvp_stack_ :
MzQuantMLHandler
cvRef :
QcMLFile::Attachment
,
QcMLFile::QualityParameter
cvs :
MzIdentMLDOMHandler::DBSequence
cvs_ :
TargetedExperiment
OpenMS / TOPP release 2.0.0
Documentation generated on Wed Mar 30 2016 16:19:08 using doxygen 1.8.5