This is the complete list of members for AScore, including all inherited members.
AScore() | AScore | |
compute(PeptideHit &hit, RichPeakSpectrum &real_spectrum, double fragment_mass_tolerance, bool fragment_mass_unit_ppm) const | AScore | |
computeCumulativeScore(Size N, Size n, double p) const | AScore | |
computePermutations(std::vector< Size > sites, Int n_phosphorylation_events) const | AScore | |
computeSiteDeterminingIons(std::vector< RichPeakSpectrum > &th_spectra, ProbablePhosphoSites &candidates, Int charge, std::vector< RichPeakSpectrum > &site_determining_ions) const | AScore | |
determineHighestScoringPermutations(const std::vector< std::vector< double > > &peptide_site_scores, std::vector< ProbablePhosphoSites > &sites, const std::vector< std::vector< Size > > &permutations) const | AScore | |
getSites(AASequence &without_phospho) const | AScore | |
numberOfMatchedIons(const RichPeakSpectrum &th, const RichPeakSpectrum &windows, Size depth, double fragment_mass_tolerance, bool fragment_mass_tolerance_ppm=false) const | AScore | |
peptideScore(const std::vector< double > &scores) const | AScore | |
~AScore() | AScore | |