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SuffixArrayTrypticSeqan.h
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34 
35 #ifndef OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
36 #define OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
37 
39 
42 #include <OpenMS/OpenMSConfig.h>
43 
44 namespace OpenMS
45 {
46 
54  class OPENMS_DLLAPI SuffixArrayTrypticSeqan :
55  public SuffixArraySeqan
56  {
57 
58 public:
59 
68  SuffixArrayTrypticSeqan(const String& st, const String& filename, const WeightWrapper::WEIGHTMODE weight_mode = WeightWrapper::MONO);
69 
76  bool isDigestingEnd(const char aa1, const char aa2) const;
77 
78 
79  };
80 }
81 
82 #endif //OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
A more convenient string class.
Definition: String.h:57
Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS ...
Definition: SuffixArraySeqan.h:128
Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS ...
Definition: SuffixArrayTrypticSeqan.h:54
WEIGHTMODE
Definition: WeightWrapper.h:55
Definition: WeightWrapper.h:55

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 16:18:42 using doxygen 1.8.5