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PILISModel Member List

This is the complete list of members for PILISModel, including all inherited members.

a_ion_losses_cd_PILISModelprotected
a_ion_losses_cr_PILISModelprotected
addPeaks_(double mz, int charge, double mz_offset, double intensity, RichPeakSpectrum &spectrum, const IsotopeDistribution &id, const String &name)PILISModelprotected
b2_ion_losses_cd_PILISModelprotected
b2_ion_losses_cr_PILISModelprotected
b_ion_losses_cd_PILISModelprotected
b_ion_losses_cr_PILISModelprotected
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
evaluate()PILISModel
getAvailableBackboneCharge_(const AASequence &ion, Residue::ResidueType res_type, int charge)PILISModelprotected
getDefaults() const DefaultParamHandler
getInitialTransitionProbabilities_(std::vector< double > &bb_init, std::vector< double > &cr_init, std::vector< double > &sc_init, double &precursor_init, const std::vector< double > &bb_charges, const std::vector< double > &sc_charges, const AASequence &peptide)PILISModelprotected
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSpectrum(RichPeakSpectrum &spec, const AASequence &peptide, UInt charge)PILISModel
getSubsections() const DefaultParamHandler
hmm_PILISModelprotected
init(bool generate_models=true)PILISModel
operator=(const PILISModel &mode)PILISModel
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
parseHMMModel_(const TextFile::ConstIterator &begin, const TextFile::ConstIterator &end, HiddenMarkovModel &hmm, Param &param)PILISModelprotected
peaks_PILISModelprotected
PILISModel()PILISModel
PILISModel(const PILISModel &model)PILISModel
precursor_model_cd_PILISModelprotected
precursor_model_cr_PILISModelprotected
prot_dist_PILISModelprotected
readFromFile(const String &filename)PILISModel
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
spectra_aligner_PILISModelprotected
subsections_DefaultParamHandlerprotected
train(const RichPeakSpectrum &, const AASequence &peptide, UInt charge)PILISModel
tsg_PILISModelprotected
updateMembers_()PILISModelprotectedvirtual
valid_PILISModelprotected
warn_empty_defaults_DefaultParamHandlerprotected
writeGraphMLFile(const String &filename)PILISModel
writeParameters_(std::ostream &os, const Param &param)PILISModelprotected
writeToFile(const String &filename)PILISModel
y_ion_losses_cd_PILISModelprotected
y_ion_losses_cr_PILISModelprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~PILISModel()PILISModelvirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 16:18:44 using doxygen 1.8.5