Warning: Permanently added '3.210.204.253' (ECDSA) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 1907510 --chroot fedora-rawhide-x86_64 --detached
Version: 0.45
Task:
{'build_id': 1907510,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'git_hash': '7ece35a86dc494f9ad8e8940fe48c15c5df3a587',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/panovotn/pg13-deps-test/rdkit.git',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'rdkit',
'package_version': '2019.03.3-13',
'project_dirname': 'pg13-deps-test',
'project_name': 'pg13-deps-test',
'project_owner': 'panovotn',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/panovotn/pg13-deps-test/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository'}],
'sandbox': 'panovotn/pg13-deps-test--panovotn',
'source_json': {},
'source_type': None,
'submitter': 'panovotn',
'task_id': '1907510-fedora-rawhide-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/panovotn/pg13-deps-test/rdkit.git /tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit --depth 500 --no-single-branch
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/panovotn/pg13-deps-test/rdkit.git', '/tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit', '--depth', '500', '--no-single-branch']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit'...
Running: git checkout 7ece35a86dc494f9ad8e8940fe48c15c5df3a587
cmd: ['git', 'checkout', '7ece35a86dc494f9ad8e8940fe48c15c5df3a587']
cwd: /tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit
rc: 0
stdout:
stderr: Note: switching to '7ece35a86dc494f9ad8e8940fe48c15c5df3a587'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 7ece35a automatic import of rdkit
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit
rc: 0
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading Release_2019_03_3.tar.gz
INFO: Calling: curl -H Pragma: -o Release_2019_03_3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/panovotn/pg13-deps-test/rdkit/Release_2019_03_3.tar.gz/md5/a2fc629cde802028516935658717f548/Release_2019_03_3.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 54.9M 100 54.9M 0 0 38.3M 0 0:00:01 0:00:01 --:--:-- 38.3M
INFO: Reading stdout from command: md5sum Release_2019_03_3.tar.gz
Running (timeout=18000): unbuffer mock --buildsrpm --spec /tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit/rdkit.spec --sources /tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1611737311.604998 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 2.9 starting (python version = 3.9.1, NVR = mock-2.9-1.fc33)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit/rdkit.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1611737311.604998/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 2.9
INFO: Mock Version: 2.9
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk
Copr repository 6.8 MB/s | 732 kB 00:00
fedora 22 MB/s | 73 MB 00:03
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing:
[1mdnf [m noarch 4.5.2-1.fc34 fedora 445 k
[1mdnf-plugins-core [m noarch 4.0.18-1.fc34 fedora 34 k
Installing dependencies:
[1malternatives [m x86_64 1.15-1.fc34 fedora 35 k
[1maudit-libs [m x86_64 3.0-1.fc34 fedora 113 k
[1mbasesystem [m noarch 11-10.fc33 fedora 6.8 k
[1mbash [m x86_64 5.1.0-1.fc34 fedora 1.7 M
[1mbzip2-libs [m x86_64 1.0.8-4.fc33 fedora 40 k
[1mca-certificates [m noarch 2020.2.41-6.fc34 fedora 353 k
[1mcoreutils [m x86_64 8.32-15.fc34 fedora 1.1 M
[1mcoreutils-common [m x86_64 8.32-15.fc34 fedora 2.0 M
[1mcrypto-policies [m noarch 20210118-1.gitb21c811.fc34 fedora 76 k
[1mcurl [m x86_64 7.74.0-2.fc34 fedora 300 k
[1mcyrus-sasl-lib [m x86_64 2.1.27-7.fc34 copr_base 101 k
[1mdnf-data [m noarch 4.5.2-1.fc34 fedora 46 k
[1melfutils-default-yama-scope [m noarch 0.182-2.fc34 fedora 16 k
[1melfutils-libelf [m x86_64 0.182-2.fc34 fedora 193 k
[1melfutils-libs [m x86_64 0.182-2.fc34 fedora 265 k
[1mexpat [m x86_64 2.2.10-1.fc34 fedora 104 k
[1mfedora-gpg-keys [m noarch 34-0.8 fedora 107 k
[1mfedora-release [m noarch 34-0.10 fedora 11 k
[1mfedora-release-common [m noarch 34-0.10 fedora 20 k
[1mfedora-release-identity-basic[m
noarch 34-0.10 fedora 12 k
[1mfedora-repos [m noarch 34-0.8 fedora 11 k
[1mfedora-repos-rawhide [m noarch 34-0.8 fedora 10 k
[1mfile-libs [m x86_64 5.39-4.fc34 fedora 591 k
[1mfilesystem [m x86_64 3.14-4.fc34 fedora 1.1 M
[1mgawk [m x86_64 5.1.0-2.fc33 fedora 1.0 M
[1mgdbm-libs [m x86_64 1:1.19-1.fc34 fedora 54 k
[1mglib2 [m x86_64 2.67.1-2.fc34 fedora 2.7 M
[1mglibc [m x86_64 2.32.9000-26.fc34 fedora 3.5 M
[1mglibc-common [m x86_64 2.32.9000-26.fc34 fedora 2.1 M
[1mglibc-minimal-langpack [m x86_64 2.32.9000-26.fc34 fedora 110 k
[1mgmp [m x86_64 1:6.2.0-5.fc34 fedora 320 k
[1mgnupg2 [m x86_64 2.2.27-1.fc34 fedora 2.3 M
[1mgnutls [m x86_64 3.6.15-2.fc34 fedora 925 k
[1mgpgme [m x86_64 1.14.0-2.fc33 fedora 205 k
[1mgrep [m x86_64 3.6-1.fc34 fedora 260 k
[1mima-evm-utils [m x86_64 1.3.2-1.fc34 fedora 62 k
[1mjson-c [m x86_64 0.14-7.fc33 fedora 41 k
[1mkeyutils-libs [m x86_64 1.6.1-1.fc34 fedora 31 k
[1mkrb5-libs [m x86_64 1.19-0.beta2.1.fc34 fedora 734 k
[1mlibacl [m x86_64 2.2.53-9.fc34 fedora 23 k
[1mlibarchive [m x86_64 3.5.1-1.fc34 fedora 391 k
[1mlibassuan [m x86_64 2.5.4-1.fc34 fedora 68 k
[1mlibattr [m x86_64 2.4.48-10.fc33 fedora 18 k
[1mlibblkid [m x86_64 2.36.1-3.fc34 fedora 100 k
[1mlibbrotli [m x86_64 1.0.9-3.fc34 fedora 322 k
[1mlibcap [m x86_64 2.46-1.fc34 fedora 65 k
[1mlibcap-ng [m x86_64 0.8.2-1.fc34 fedora 32 k
[1mlibcom_err [m x86_64 1.45.6-4.fc33 fedora 27 k
[1mlibcomps [m x86_64 0.1.15-5.fc33 fedora 79 k
[1mlibcurl [m x86_64 7.74.0-2.fc34 fedora 285 k
[1mlibdb [m x86_64 5.3.28-45.fc34 fedora 760 k
[1mlibdnf [m x86_64 0.55.2-1.fc34 fedora 624 k
[1mlibffi [m x86_64 3.1-27.fc34 fedora 33 k
[1mlibgcc [m x86_64 11.0.0-0.16.fc34 fedora 90 k
[1mlibgcrypt [m x86_64 1.8.7-1.fc34 fedora 476 k
[1mlibgomp [m x86_64 11.0.0-0.16.fc34 fedora 260 k
[1mlibgpg-error [m x86_64 1.41-1.fc34 fedora 212 k
[1mlibidn2 [m x86_64 2.3.0-4.fc34 fedora 104 k
[1mlibksba [m x86_64 1.5.0-1.fc34 fedora 152 k
[1mlibmetalink [m x86_64 0.1.3-13.fc33 fedora 31 k
[1mlibmodulemd [m x86_64 2.12.0-1.fc34 fedora 235 k
[1mlibmount [m x86_64 2.36.1-3.fc34 fedora 131 k
[1mlibnghttp2 [m x86_64 1.42.0-1.fc34 fedora 76 k
[1mlibnsl2 [m x86_64 1.3.0-1.fc34 fedora 58 k
[1mlibpsl [m x86_64 0.21.1-2.fc33 fedora 61 k
[1mlibrepo [m x86_64 1.12.1-1.fc34 fedora 97 k
[1mlibreport-filesystem [m noarch 2.14.0-15.fc34 fedora 15 k
[1mlibselinux [m x86_64 3.2-0.rc1.1.fc34 fedora 84 k
[1mlibsemanage [m x86_64 3.2-0.rc1.1.fc34 fedora 116 k
[1mlibsepol [m x86_64 3.2-0.rc1.1.fc34 fedora 286 k
[1mlibsigsegv [m x86_64 2.13-1.fc34 fedora 27 k
[1mlibsmartcols [m x86_64 2.36.1-3.fc34 fedora 59 k
[1mlibsolv [m x86_64 0.7.17-2.fc34 fedora 392 k
[1mlibssh [m x86_64 0.9.5-1.fc34 fedora 209 k
[1mlibssh-config [m noarch 0.9.5-1.fc34 fedora 11 k
[1mlibstdc++ [m x86_64 11.0.0-0.16.fc34 fedora 694 k
[1mlibtasn1 [m x86_64 4.16.0-3.fc33 fedora 75 k
[1mlibtirpc [m x86_64 1.3.1-0.fc34 fedora 95 k
[1mlibunistring [m x86_64 0.9.10-9.fc33 fedora 516 k
[1mlibusbx [m x86_64 1.0.23-2.fc33 fedora 70 k
[1mlibuuid [m x86_64 2.36.1-3.fc34 fedora 24 k
[1mlibverto [m x86_64 0.3.1-2.fc34 fedora 21 k
[1mlibxcrypt [m x86_64 4.4.17-1.fc34 fedora 121 k
[1mlibxml2 [m x86_64 2.9.10-9.fc34 fedora 744 k
[1mlibyaml [m x86_64 0.2.5-4.fc34 fedora 61 k
[1mlibzstd [m x86_64 1.4.7-1.fc34 fedora 340 k
[1mlua-libs [m x86_64 5.4.2-1.fc34 fedora 216 k
[1mlz4-libs [m x86_64 1.9.3-1.fc34 fedora 67 k
[1mmpfr [m x86_64 4.1.0-2.fc33 fedora 1.4 M
[1mncurses-base [m noarch 6.2-3.20200222.fc33 fedora 60 k
[1mncurses-libs [m x86_64 6.2-3.20200222.fc33 fedora 329 k
[1mnettle [m x86_64 3.7-1.fc34 fedora 396 k
[1mnpth [m x86_64 1.6-5.fc33 fedora 25 k
[1mopenldap [m x86_64 2.4.57-1.fc34 fedora 261 k
[1mopenssl-libs [m x86_64 1:1.1.1i-1.fc34 fedora 1.4 M
[1mp11-kit [m x86_64 0.23.22-1.fc34 fedora 369 k
[1mp11-kit-trust [m x86_64 0.23.22-1.fc34 fedora 141 k
[1mpcre [m x86_64 8.44-3.fc34 fedora 200 k
[1mpcre2 [m x86_64 10.36-2.fc34 fedora 234 k
[1mpcre2-syntax [m noarch 10.36-2.fc34 fedora 143 k
[1mpopt [m x86_64 1.18-2.fc34 fedora 59 k
[1mpublicsuffix-list-dafsa [m noarch 20190417-4.fc33 fedora 55 k
[1mpython-pip-wheel [m noarch 20.3.3-3.fc34 fedora 1.3 M
[1mpython-setuptools-wheel [m noarch 51.1.2-1.fc34 fedora 471 k
[1mpython3 [m x86_64 3.9.1-3.fc34 fedora 28 k
[1mpython3-dateutil [m noarch 1:2.8.1-2.fc33 fedora 289 k
[1mpython3-distro [m noarch 1.5.0-4.fc33 fedora 36 k
[1mpython3-dnf [m noarch 4.5.2-1.fc34 fedora 413 k
[1mpython3-dnf-plugins-core [m noarch 4.0.18-1.fc34 fedora 191 k
[1mpython3-gpg [m x86_64 1.14.0-2.fc33 fedora 268 k
[1mpython3-hawkey [m x86_64 0.55.2-1.fc34 fedora 113 k
[1mpython3-libcomps [m x86_64 0.1.15-5.fc33 fedora 51 k
[1mpython3-libdnf [m x86_64 0.55.2-1.fc34 fedora 779 k
[1mpython3-libs [m x86_64 3.9.1-3.fc34 fedora 7.7 M
[1mpython3-rpm [m x86_64 4.16.1.2-4.fc34 fedora 99 k
[1mpython3-setuptools [m noarch 51.1.2-1.fc34 fedora 843 k
[1mpython3-six [m noarch 1.15.0-3.fc34 fedora 37 k
[1mreadline [m x86_64 8.1-1.fc34 fedora 216 k
[1mrpm [m x86_64 4.16.1.2-4.fc34 fedora 527 k
[1mrpm-build-libs [m x86_64 4.16.1.2-4.fc34 fedora 97 k
[1mrpm-libs [m x86_64 4.16.1.2-4.fc34 fedora 326 k
[1mrpm-sign-libs [m x86_64 4.16.1.2-4.fc34 fedora 27 k
[1msed [m x86_64 4.8-6.fc34 fedora 298 k
[1msetup [m noarch 2.13.7-2.fc33 fedora 142 k
[1mshadow-utils [m x86_64 2:4.8.1-6.fc34 fedora 1.2 M
[1msqlite-libs [m x86_64 3.34.0-1.fc34 fedora 626 k
[1msystemd-libs [m x86_64 247.2-1.fc34 fedora 546 k
[1mtpm2-tss [m x86_64 3.0.3-1.fc34 fedora 588 k
[1mtzdata [m noarch 2020f-1.fc34 fedora 432 k
[1mxz-libs [m x86_64 5.2.5-4.fc34 fedora 91 k
[1mzchunk-libs [m x86_64 1.1.9-1.fc34 fedora 46 k
[1mzlib [m x86_64 1.2.11-23.fc34 fedora 92 k
Transaction Summary
================================================================================
Install 134 Packages
Total download size: 55 M
Installed size: 191 M
Downloading Packages:
(1/134): cyrus-sasl-lib-2.1.27-7.fc34.x86_64.rp 6.1 MB/s | 101 kB 00:00
(2/134): basesystem-11-10.fc33.noarch.rpm 378 kB/s | 6.8 kB 00:00
(3/134): alternatives-1.15-1.fc34.x86_64.rpm 875 kB/s | 35 kB 00:00
(4/134): audit-libs-3.0-1.fc34.x86_64.rpm 1.9 MB/s | 113 kB 00:00
(5/134): bzip2-libs-1.0.8-4.fc33.x86_64.rpm 2.1 MB/s | 40 kB 00:00
(6/134): ca-certificates-2020.2.41-6.fc34.noarc 11 MB/s | 353 kB 00:00
(7/134): coreutils-8.32-15.fc34.x86_64.rpm 19 MB/s | 1.1 MB 00:00
(8/134): bash-5.1.0-1.fc34.x86_64.rpm 16 MB/s | 1.7 MB 00:00
(9/134): crypto-policies-20210118-1.gitb21c811. 4.1 MB/s | 76 kB 00:00
(10/134): coreutils-common-8.32-15.fc34.x86_64. 29 MB/s | 2.0 MB 00:00
(11/134): curl-7.74.0-2.fc34.x86_64.rpm 12 MB/s | 300 kB 00:00
(12/134): dnf-4.5.2-1.fc34.noarch.rpm 16 MB/s | 445 kB 00:00
(13/134): dnf-data-4.5.2-1.fc34.noarch.rpm 4.6 MB/s | 46 kB 00:00
(14/134): dnf-plugins-core-4.0.18-1.fc34.noarch 3.4 MB/s | 34 kB 00:00
(15/134): elfutils-default-yama-scope-0.182-2.f 1.7 MB/s | 16 kB 00:00
(16/134): elfutils-libelf-0.182-2.fc34.x86_64.r 16 MB/s | 193 kB 00:00
(17/134): elfutils-libs-0.182-2.fc34.x86_64.rpm 19 MB/s | 265 kB 00:00
(18/134): expat-2.2.10-1.fc34.x86_64.rpm 8.5 MB/s | 104 kB 00:00
(19/134): fedora-gpg-keys-34-0.8.noarch.rpm 9.9 MB/s | 107 kB 00:00
(20/134): fedora-release-34-0.10.noarch.rpm 1.2 MB/s | 11 kB 00:00
(21/134): fedora-release-common-34-0.10.noarch. 2.1 MB/s | 20 kB 00:00
(22/134): fedora-release-identity-basic-34-0.10 1.2 MB/s | 12 kB 00:00
(23/134): fedora-repos-34-0.8.noarch.rpm 1.1 MB/s | 11 kB 00:00
(24/134): fedora-repos-rawhide-34-0.8.noarch.rp 1.1 MB/s | 10 kB 00:00
(25/134): file-libs-5.39-4.fc34.x86_64.rpm 28 MB/s | 591 kB 00:00
(26/134): filesystem-3.14-4.fc34.x86_64.rpm 33 MB/s | 1.1 MB 00:00
(27/134): gdbm-libs-1.19-1.fc34.x86_64.rpm 3.2 MB/s | 54 kB 00:00
(28/134): gawk-5.1.0-2.fc33.x86_64.rpm 27 MB/s | 1.0 MB 00:00
(29/134): glib2-2.67.1-2.fc34.x86_64.rpm 36 MB/s | 2.7 MB 00:00
(30/134): glibc-common-2.32.9000-26.fc34.x86_64 24 MB/s | 2.1 MB 00:00
(31/134): glibc-minimal-langpack-2.32.9000-26.f 5.7 MB/s | 110 kB 00:00
(32/134): glibc-2.32.9000-26.fc34.x86_64.rpm 28 MB/s | 3.5 MB 00:00
(33/134): gmp-6.2.0-5.fc34.x86_64.rpm 8.5 MB/s | 320 kB 00:00
(34/134): gpgme-1.14.0-2.fc33.x86_64.rpm 14 MB/s | 205 kB 00:00
(35/134): gnupg2-2.2.27-1.fc34.x86_64.rpm 37 MB/s | 2.3 MB 00:00
(36/134): gnutls-3.6.15-2.fc34.x86_64.rpm 26 MB/s | 925 kB 00:00
(37/134): grep-3.6-1.fc34.x86_64.rpm 13 MB/s | 260 kB 00:00
(38/134): ima-evm-utils-1.3.2-1.fc34.x86_64.rpm 6.0 MB/s | 62 kB 00:00
(39/134): json-c-0.14-7.fc33.x86_64.rpm 3.8 MB/s | 41 kB 00:00
(40/134): keyutils-libs-1.6.1-1.fc34.x86_64.rpm 3.2 MB/s | 31 kB 00:00
(41/134): libacl-2.2.53-9.fc34.x86_64.rpm 2.0 MB/s | 23 kB 00:00
(42/134): krb5-libs-1.19-0.beta2.1.fc34.x86_64. 34 MB/s | 734 kB 00:00
(43/134): libarchive-3.5.1-1.fc34.x86_64.rpm 21 MB/s | 391 kB 00:00
(44/134): libassuan-2.5.4-1.fc34.x86_64.rpm 6.6 MB/s | 68 kB 00:00
(45/134): libattr-2.4.48-10.fc33.x86_64.rpm 1.9 MB/s | 18 kB 00:00
(46/134): libblkid-2.36.1-3.fc34.x86_64.rpm 9.3 MB/s | 100 kB 00:00
(47/134): libbrotli-1.0.9-3.fc34.x86_64.rpm 22 MB/s | 322 kB 00:00
(48/134): libcap-2.46-1.fc34.x86_64.rpm 5.3 MB/s | 65 kB 00:00
(49/134): libcap-ng-0.8.2-1.fc34.x86_64.rpm 3.3 MB/s | 32 kB 00:00
(50/134): libcom_err-1.45.6-4.fc33.x86_64.rpm 2.8 MB/s | 27 kB 00:00
(51/134): libcomps-0.1.15-5.fc33.x86_64.rpm 7.6 MB/s | 79 kB 00:00
(52/134): libcurl-7.74.0-2.fc34.x86_64.rpm 22 MB/s | 285 kB 00:00
(53/134): libffi-3.1-27.fc34.x86_64.rpm 2.3 MB/s | 33 kB 00:00
(54/134): libdb-5.3.28-45.fc34.x86_64.rpm 30 MB/s | 760 kB 00:00
(55/134): libdnf-0.55.2-1.fc34.x86_64.rpm 23 MB/s | 624 kB 00:00
(56/134): libgcc-11.0.0-0.16.fc34.x86_64.rpm 8.5 MB/s | 90 kB 00:00
(57/134): libgcrypt-1.8.7-1.fc34.x86_64.rpm 28 MB/s | 476 kB 00:00
(58/134): libgomp-11.0.0-0.16.fc34.x86_64.rpm 15 MB/s | 260 kB 00:00
(59/134): libgpg-error-1.41-1.fc34.x86_64.rpm 14 MB/s | 212 kB 00:00
(60/134): libidn2-2.3.0-4.fc34.x86_64.rpm 9.6 MB/s | 104 kB 00:00
(61/134): libksba-1.5.0-1.fc34.x86_64.rpm 13 MB/s | 152 kB 00:00
(62/134): libmetalink-0.1.3-13.fc33.x86_64.rpm 2.8 MB/s | 31 kB 00:00
(63/134): libmodulemd-2.12.0-1.fc34.x86_64.rpm 19 MB/s | 235 kB 00:00
(64/134): libmount-2.36.1-3.fc34.x86_64.rpm 11 MB/s | 131 kB 00:00
(65/134): libnghttp2-1.42.0-1.fc34.x86_64.rpm 6.5 MB/s | 76 kB 00:00
(66/134): libnsl2-1.3.0-1.fc34.x86_64.rpm 5.7 MB/s | 58 kB 00:00
(67/134): libpsl-0.21.1-2.fc33.x86_64.rpm 5.8 MB/s | 61 kB 00:00
(68/134): librepo-1.12.1-1.fc34.x86_64.rpm 8.7 MB/s | 97 kB 00:00
(69/134): libreport-filesystem-2.14.0-15.fc34.n 1.5 MB/s | 15 kB 00:00
(70/134): libselinux-3.2-0.rc1.1.fc34.x86_64.rp 7.9 MB/s | 84 kB 00:00
(71/134): libsemanage-3.2-0.rc1.1.fc34.x86_64.r 10 MB/s | 116 kB 00:00
(72/134): libsepol-3.2-0.rc1.1.fc34.x86_64.rpm 21 MB/s | 286 kB 00:00
(73/134): libsigsegv-2.13-1.fc34.x86_64.rpm 2.7 MB/s | 27 kB 00:00
(74/134): libsmartcols-2.36.1-3.fc34.x86_64.rpm 5.7 MB/s | 59 kB 00:00
(75/134): libssh-config-0.9.5-1.fc34.noarch.rpm 1.0 MB/s | 11 kB 00:00
(76/134): libssh-0.9.5-1.fc34.x86_64.rpm 13 MB/s | 209 kB 00:00
(77/134): libsolv-0.7.17-2.fc34.x86_64.rpm 20 MB/s | 392 kB 00:00
(78/134): libtasn1-4.16.0-3.fc33.x86_64.rpm 5.2 MB/s | 75 kB 00:00
(79/134): libtirpc-1.3.1-0.fc34.x86_64.rpm 6.7 MB/s | 95 kB 00:00
(80/134): libstdc++-11.0.0-0.16.fc34.x86_64.rpm 29 MB/s | 694 kB 00:00
(81/134): libusbx-1.0.23-2.fc33.x86_64.rpm 5.3 MB/s | 70 kB 00:00
(82/134): libuuid-2.36.1-3.fc34.x86_64.rpm 2.5 MB/s | 24 kB 00:00
(83/134): libunistring-0.9.10-9.fc33.x86_64.rpm 26 MB/s | 516 kB 00:00
(84/134): libverto-0.3.1-2.fc34.x86_64.rpm 2.2 MB/s | 21 kB 00:00
(85/134): libxcrypt-4.4.17-1.fc34.x86_64.rpm 11 MB/s | 121 kB 00:00
(86/134): libyaml-0.2.5-4.fc34.x86_64.rpm 5.1 MB/s | 61 kB 00:00
(87/134): libzstd-1.4.7-1.fc34.x86_64.rpm 23 MB/s | 340 kB 00:00
(88/134): libxml2-2.9.10-9.fc34.x86_64.rpm 28 MB/s | 744 kB 00:00
(89/134): lua-libs-5.4.2-1.fc34.x86_64.rpm 17 MB/s | 216 kB 00:00
(90/134): lz4-libs-1.9.3-1.fc34.x86_64.rpm 6.4 MB/s | 67 kB 00:00
(91/134): ncurses-base-6.2-3.20200222.fc33.noar 4.2 MB/s | 60 kB 00:00
(92/134): ncurses-libs-6.2-3.20200222.fc33.x86_ 17 MB/s | 329 kB 00:00
(93/134): nettle-3.7-1.fc34.x86_64.rpm 25 MB/s | 396 kB 00:00
(94/134): npth-1.6-5.fc33.x86_64.rpm 2.5 MB/s | 25 kB 00:00
(95/134): mpfr-4.1.0-2.fc33.x86_64.rpm 32 MB/s | 1.4 MB 00:00
(96/134): openldap-2.4.57-1.fc34.x86_64.rpm 13 MB/s | 261 kB 00:00
(97/134): p11-kit-0.23.22-1.fc34.x86_64.rpm 17 MB/s | 369 kB 00:00
(98/134): p11-kit-trust-0.23.22-1.fc34.x86_64.r 12 MB/s | 141 kB 00:00
(99/134): openssl-libs-1.1.1i-1.fc34.x86_64.rpm 34 MB/s | 1.4 MB 00:00
(100/134): pcre-8.44-3.fc34.x86_64.rpm 11 MB/s | 200 kB 00:00
(101/134): pcre2-10.36-2.fc34.x86_64.rpm 14 MB/s | 234 kB 00:00
(102/134): pcre2-syntax-10.36-2.fc34.noarch.rpm 12 MB/s | 143 kB 00:00
(103/134): popt-1.18-2.fc34.x86_64.rpm 5.6 MB/s | 59 kB 00:00
(104/134): publicsuffix-list-dafsa-20190417-4.f 5.3 MB/s | 55 kB 00:00
(105/134): python3-3.9.1-3.fc34.x86_64.rpm 1.9 MB/s | 28 kB 00:00
(106/134): python-setuptools-wheel-51.1.2-1.fc3 18 MB/s | 471 kB 00:00
(107/134): python3-dateutil-2.8.1-2.fc33.noarch 20 MB/s | 289 kB 00:00
(108/134): python-pip-wheel-20.3.3-3.fc34.noarc 31 MB/s | 1.3 MB 00:00
(109/134): python3-distro-1.5.0-4.fc33.noarch.r 2.5 MB/s | 36 kB 00:00
(110/134): python3-dnf-4.5.2-1.fc34.noarch.rpm 26 MB/s | 413 kB 00:00
(111/134): python3-dnf-plugins-core-4.0.18-1.fc 13 MB/s | 191 kB 00:00
(112/134): python3-gpg-1.14.0-2.fc33.x86_64.rpm 17 MB/s | 268 kB 00:00
(113/134): python3-hawkey-0.55.2-1.fc34.x86_64. 10 MB/s | 113 kB 00:00
(114/134): python3-libcomps-0.1.15-5.fc33.x86_6 5.0 MB/s | 51 kB 00:00
(115/134): python3-rpm-4.16.1.2-4.fc34.x86_64.r 6.1 MB/s | 99 kB 00:00
(116/134): python3-libdnf-0.55.2-1.fc34.x86_64. 22 MB/s | 779 kB 00:00
(117/134): python3-six-1.15.0-3.fc34.noarch.rpm 2.5 MB/s | 37 kB 00:00
(118/134): python3-setuptools-51.1.2-1.fc34.noa 28 MB/s | 843 kB 00:00
(119/134): readline-8.1-1.fc34.x86_64.rpm 16 MB/s | 216 kB 00:00
(120/134): rpm-4.16.1.2-4.fc34.x86_64.rpm 23 MB/s | 527 kB 00:00
(121/134): rpm-build-libs-4.16.1.2-4.fc34.x86_6 5.2 MB/s | 97 kB 00:00
(122/134): rpm-libs-4.16.1.2-4.fc34.x86_64.rpm 18 MB/s | 326 kB 00:00
(123/134): rpm-sign-libs-4.16.1.2-4.fc34.x86_64 1.6 MB/s | 27 kB 00:00
(124/134): setup-2.13.7-2.fc33.noarch.rpm 9.1 MB/s | 142 kB 00:00
(125/134): sed-4.8-6.fc34.x86_64.rpm 15 MB/s | 298 kB 00:00
(126/134): python3-libs-3.9.1-3.fc34.x86_64.rpm 50 MB/s | 7.7 MB 00:00
(127/134): sqlite-libs-3.34.0-1.fc34.x86_64.rpm 13 MB/s | 626 kB 00:00
(128/134): shadow-utils-4.8.1-6.fc34.x86_64.rpm 19 MB/s | 1.2 MB 00:00
(129/134): systemd-libs-247.2-1.fc34.x86_64.rpm 22 MB/s | 546 kB 00:00
(130/134): tpm2-tss-3.0.3-1.fc34.x86_64.rpm 26 MB/s | 588 kB 00:00
(131/134): tzdata-2020f-1.fc34.noarch.rpm 27 MB/s | 432 kB 00:00
(132/134): xz-libs-5.2.5-4.fc34.x86_64.rpm 7.9 MB/s | 91 kB 00:00
(133/134): zchunk-libs-1.1.9-1.fc34.x86_64.rpm 4.7 MB/s | 46 kB 00:00
(134/134): zlib-1.2.11-23.fc34.x86_64.rpm 8.8 MB/s | 92 kB 00:00
--------------------------------------------------------------------------------
Total 52 MB/s | 55 MB 00:01
warning: /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1611737311.604998/root/var/cache/dnf/fedora-2d95c80a1fa0a67d/packages/alternatives-1.15-1.fc34.x86_64.rpm: Header V4 RSA/SHA256 Signature, key ID 45719a39: NOKEY
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x45719A39:
Userid : "Fedora (34) <fedora-34-primary@fedoraproject.org>"
Fingerprint: 8C5B A699 0BDB 26E1 9F2A 1A80 1161 AE69 4571 9A39
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-34-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-34-primary (0x45719A39) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x9570FF31:
Userid : "Fedora (33) <fedora-33-primary@fedoraproject.org>"
Fingerprint: 963A 2BEB 0200 9608 FE67 EA42 49FD 7749 9570 FF31
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-33-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.14-4.fc34.x86_64 1/1
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warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew
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Verifying : fedora-release-identity-basic-34-0.10.noarch 22/134
Verifying : fedora-repos-34-0.8.noarch 23/134
Verifying : fedora-repos-rawhide-34-0.8.noarch 24/134
Verifying : file-libs-5.39-4.fc34.x86_64 25/134
Verifying : filesystem-3.14-4.fc34.x86_64 26/134
Verifying : gawk-5.1.0-2.fc33.x86_64 27/134
Verifying : gdbm-libs-1:1.19-1.fc34.x86_64 28/134
Verifying : glib2-2.67.1-2.fc34.x86_64 29/134
Verifying : glibc-2.32.9000-26.fc34.x86_64 30/134
Verifying : glibc-common-2.32.9000-26.fc34.x86_64 31/134
Verifying : glibc-minimal-langpack-2.32.9000-26.fc34.x86_64 32/134
Verifying : gmp-1:6.2.0-5.fc34.x86_64 33/134
Verifying : gnupg2-2.2.27-1.fc34.x86_64 34/134
Verifying : gnutls-3.6.15-2.fc34.x86_64 35/134
Verifying : gpgme-1.14.0-2.fc33.x86_64 36/134
Verifying : grep-3.6-1.fc34.x86_64 37/134
Verifying : ima-evm-utils-1.3.2-1.fc34.x86_64 38/134
Verifying : json-c-0.14-7.fc33.x86_64 39/134
Verifying : keyutils-libs-1.6.1-1.fc34.x86_64 40/134
Verifying : krb5-libs-1.19-0.beta2.1.fc34.x86_64 41/134
Verifying : libacl-2.2.53-9.fc34.x86_64 42/134
Verifying : libarchive-3.5.1-1.fc34.x86_64 43/134
Verifying : libassuan-2.5.4-1.fc34.x86_64 44/134
Verifying : libattr-2.4.48-10.fc33.x86_64 45/134
Verifying : libblkid-2.36.1-3.fc34.x86_64 46/134
Verifying : libbrotli-1.0.9-3.fc34.x86_64 47/134
Verifying : libcap-2.46-1.fc34.x86_64 48/134
Verifying : libcap-ng-0.8.2-1.fc34.x86_64 49/134
Verifying : libcom_err-1.45.6-4.fc33.x86_64 50/134
Verifying : libcomps-0.1.15-5.fc33.x86_64 51/134
Verifying : libcurl-7.74.0-2.fc34.x86_64 52/134
Verifying : libdb-5.3.28-45.fc34.x86_64 53/134
Verifying : libdnf-0.55.2-1.fc34.x86_64 54/134
Verifying : libffi-3.1-27.fc34.x86_64 55/134
Verifying : libgcc-11.0.0-0.16.fc34.x86_64 56/134
Verifying : libgcrypt-1.8.7-1.fc34.x86_64 57/134
Verifying : libgomp-11.0.0-0.16.fc34.x86_64 58/134
Verifying : libgpg-error-1.41-1.fc34.x86_64 59/134
Verifying : libidn2-2.3.0-4.fc34.x86_64 60/134
Verifying : libksba-1.5.0-1.fc34.x86_64 61/134
Verifying : libmetalink-0.1.3-13.fc33.x86_64 62/134
Verifying : libmodulemd-2.12.0-1.fc34.x86_64 63/134
Verifying : libmount-2.36.1-3.fc34.x86_64 64/134
Verifying : libnghttp2-1.42.0-1.fc34.x86_64 65/134
Verifying : libnsl2-1.3.0-1.fc34.x86_64 66/134
Verifying : libpsl-0.21.1-2.fc33.x86_64 67/134
Verifying : librepo-1.12.1-1.fc34.x86_64 68/134
Verifying : libreport-filesystem-2.14.0-15.fc34.noarch 69/134
Verifying : libselinux-3.2-0.rc1.1.fc34.x86_64 70/134
Verifying : libsemanage-3.2-0.rc1.1.fc34.x86_64 71/134
Verifying : libsepol-3.2-0.rc1.1.fc34.x86_64 72/134
Verifying : libsigsegv-2.13-1.fc34.x86_64 73/134
Verifying : libsmartcols-2.36.1-3.fc34.x86_64 74/134
Verifying : libsolv-0.7.17-2.fc34.x86_64 75/134
Verifying : libssh-0.9.5-1.fc34.x86_64 76/134
Verifying : libssh-config-0.9.5-1.fc34.noarch 77/134
Verifying : libstdc++-11.0.0-0.16.fc34.x86_64 78/134
Verifying : libtasn1-4.16.0-3.fc33.x86_64 79/134
Verifying : libtirpc-1.3.1-0.fc34.x86_64 80/134
Verifying : libunistring-0.9.10-9.fc33.x86_64 81/134
Verifying : libusbx-1.0.23-2.fc33.x86_64 82/134
Verifying : libuuid-2.36.1-3.fc34.x86_64 83/134
Verifying : libverto-0.3.1-2.fc34.x86_64 84/134
Verifying : libxcrypt-4.4.17-1.fc34.x86_64 85/134
Verifying : libxml2-2.9.10-9.fc34.x86_64 86/134
Verifying : libyaml-0.2.5-4.fc34.x86_64 87/134
Verifying : libzstd-1.4.7-1.fc34.x86_64 88/134
Verifying : lua-libs-5.4.2-1.fc34.x86_64 89/134
Verifying : lz4-libs-1.9.3-1.fc34.x86_64 90/134
Verifying : mpfr-4.1.0-2.fc33.x86_64 91/134
Verifying : ncurses-base-6.2-3.20200222.fc33.noarch 92/134
Verifying : ncurses-libs-6.2-3.20200222.fc33.x86_64 93/134
Verifying : nettle-3.7-1.fc34.x86_64 94/134
Verifying : npth-1.6-5.fc33.x86_64 95/134
Verifying : openldap-2.4.57-1.fc34.x86_64 96/134
Verifying : openssl-libs-1:1.1.1i-1.fc34.x86_64 97/134
Verifying : p11-kit-0.23.22-1.fc34.x86_64 98/134
Verifying : p11-kit-trust-0.23.22-1.fc34.x86_64 99/134
Verifying : pcre-8.44-3.fc34.x86_64 100/134
Verifying : pcre2-10.36-2.fc34.x86_64 101/134
Verifying : pcre2-syntax-10.36-2.fc34.noarch 102/134
Verifying : popt-1.18-2.fc34.x86_64 103/134
Verifying : publicsuffix-list-dafsa-20190417-4.fc33.noarch 104/134
Verifying : python-pip-wheel-20.3.3-3.fc34.noarch 105/134
Verifying : python-setuptools-wheel-51.1.2-1.fc34.noarch 106/134
Verifying : python3-3.9.1-3.fc34.x86_64 107/134
Verifying : python3-dateutil-1:2.8.1-2.fc33.noarch 108/134
Verifying : python3-distro-1.5.0-4.fc33.noarch 109/134
Verifying : python3-dnf-4.5.2-1.fc34.noarch 110/134
Verifying : python3-dnf-plugins-core-4.0.18-1.fc34.noarch 111/134
Verifying : python3-gpg-1.14.0-2.fc33.x86_64 112/134
Verifying : python3-hawkey-0.55.2-1.fc34.x86_64 113/134
Verifying : python3-libcomps-0.1.15-5.fc33.x86_64 114/134
Verifying : python3-libdnf-0.55.2-1.fc34.x86_64 115/134
Verifying : python3-libs-3.9.1-3.fc34.x86_64 116/134
Verifying : python3-rpm-4.16.1.2-4.fc34.x86_64 117/134
Verifying : python3-setuptools-51.1.2-1.fc34.noarch 118/134
Verifying : python3-six-1.15.0-3.fc34.noarch 119/134
Verifying : readline-8.1-1.fc34.x86_64 120/134
Verifying : rpm-4.16.1.2-4.fc34.x86_64 121/134
Verifying : rpm-build-libs-4.16.1.2-4.fc34.x86_64 122/134
Verifying : rpm-libs-4.16.1.2-4.fc34.x86_64 123/134
Verifying : rpm-sign-libs-4.16.1.2-4.fc34.x86_64 124/134
Verifying : sed-4.8-6.fc34.x86_64 125/134
Verifying : setup-2.13.7-2.fc33.noarch 126/134
Verifying : shadow-utils-2:4.8.1-6.fc34.x86_64 127/134
Verifying : sqlite-libs-3.34.0-1.fc34.x86_64 128/134
Verifying : systemd-libs-247.2-1.fc34.x86_64 129/134
Verifying : tpm2-tss-3.0.3-1.fc34.x86_64 130/134
Verifying : tzdata-2020f-1.fc34.noarch 131/134
Verifying : xz-libs-5.2.5-4.fc34.x86_64 132/134
Verifying : zchunk-libs-1.1.9-1.fc34.x86_64 133/134
Verifying : zlib-1.2.11-23.fc34.x86_64 134/134
Installed:
alternatives-1.15-1.fc34.x86_64
audit-libs-3.0-1.fc34.x86_64
basesystem-11-10.fc33.noarch
bash-5.1.0-1.fc34.x86_64
bzip2-libs-1.0.8-4.fc33.x86_64
ca-certificates-2020.2.41-6.fc34.noarch
coreutils-8.32-15.fc34.x86_64
coreutils-common-8.32-15.fc34.x86_64
crypto-policies-20210118-1.gitb21c811.fc34.noarch
curl-7.74.0-2.fc34.x86_64
cyrus-sasl-lib-2.1.27-7.fc34.x86_64
dnf-4.5.2-1.fc34.noarch
dnf-data-4.5.2-1.fc34.noarch
dnf-plugins-core-4.0.18-1.fc34.noarch
elfutils-default-yama-scope-0.182-2.fc34.noarch
elfutils-libelf-0.182-2.fc34.x86_64
elfutils-libs-0.182-2.fc34.x86_64
expat-2.2.10-1.fc34.x86_64
fedora-gpg-keys-34-0.8.noarch
fedora-release-34-0.10.noarch
fedora-release-common-34-0.10.noarch
fedora-release-identity-basic-34-0.10.noarch
fedora-repos-34-0.8.noarch
fedora-repos-rawhide-34-0.8.noarch
file-libs-5.39-4.fc34.x86_64
filesystem-3.14-4.fc34.x86_64
gawk-5.1.0-2.fc33.x86_64
gdbm-libs-1:1.19-1.fc34.x86_64
glib2-2.67.1-2.fc34.x86_64
glibc-2.32.9000-26.fc34.x86_64
glibc-common-2.32.9000-26.fc34.x86_64
glibc-minimal-langpack-2.32.9000-26.fc34.x86_64
gmp-1:6.2.0-5.fc34.x86_64
gnupg2-2.2.27-1.fc34.x86_64
gnutls-3.6.15-2.fc34.x86_64
gpgme-1.14.0-2.fc33.x86_64
grep-3.6-1.fc34.x86_64
ima-evm-utils-1.3.2-1.fc34.x86_64
json-c-0.14-7.fc33.x86_64
keyutils-libs-1.6.1-1.fc34.x86_64
krb5-libs-1.19-0.beta2.1.fc34.x86_64
libacl-2.2.53-9.fc34.x86_64
libarchive-3.5.1-1.fc34.x86_64
libassuan-2.5.4-1.fc34.x86_64
libattr-2.4.48-10.fc33.x86_64
libblkid-2.36.1-3.fc34.x86_64
libbrotli-1.0.9-3.fc34.x86_64
libcap-2.46-1.fc34.x86_64
libcap-ng-0.8.2-1.fc34.x86_64
libcom_err-1.45.6-4.fc33.x86_64
libcomps-0.1.15-5.fc33.x86_64
libcurl-7.74.0-2.fc34.x86_64
libdb-5.3.28-45.fc34.x86_64
libdnf-0.55.2-1.fc34.x86_64
libffi-3.1-27.fc34.x86_64
libgcc-11.0.0-0.16.fc34.x86_64
libgcrypt-1.8.7-1.fc34.x86_64
libgomp-11.0.0-0.16.fc34.x86_64
libgpg-error-1.41-1.fc34.x86_64
libidn2-2.3.0-4.fc34.x86_64
libksba-1.5.0-1.fc34.x86_64
libmetalink-0.1.3-13.fc33.x86_64
libmodulemd-2.12.0-1.fc34.x86_64
libmount-2.36.1-3.fc34.x86_64
libnghttp2-1.42.0-1.fc34.x86_64
libnsl2-1.3.0-1.fc34.x86_64
libpsl-0.21.1-2.fc33.x86_64
librepo-1.12.1-1.fc34.x86_64
libreport-filesystem-2.14.0-15.fc34.noarch
libselinux-3.2-0.rc1.1.fc34.x86_64
libsemanage-3.2-0.rc1.1.fc34.x86_64
libsepol-3.2-0.rc1.1.fc34.x86_64
libsigsegv-2.13-1.fc34.x86_64
libsmartcols-2.36.1-3.fc34.x86_64
libsolv-0.7.17-2.fc34.x86_64
libssh-0.9.5-1.fc34.x86_64
libssh-config-0.9.5-1.fc34.noarch
libstdc++-11.0.0-0.16.fc34.x86_64
libtasn1-4.16.0-3.fc33.x86_64
libtirpc-1.3.1-0.fc34.x86_64
libunistring-0.9.10-9.fc33.x86_64
libusbx-1.0.23-2.fc33.x86_64
libuuid-2.36.1-3.fc34.x86_64
libverto-0.3.1-2.fc34.x86_64
libxcrypt-4.4.17-1.fc34.x86_64
libxml2-2.9.10-9.fc34.x86_64
libyaml-0.2.5-4.fc34.x86_64
libzstd-1.4.7-1.fc34.x86_64
lua-libs-5.4.2-1.fc34.x86_64
lz4-libs-1.9.3-1.fc34.x86_64
mpfr-4.1.0-2.fc33.x86_64
ncurses-base-6.2-3.20200222.fc33.noarch
ncurses-libs-6.2-3.20200222.fc33.x86_64
nettle-3.7-1.fc34.x86_64
npth-1.6-5.fc33.x86_64
openldap-2.4.57-1.fc34.x86_64
openssl-libs-1:1.1.1i-1.fc34.x86_64
p11-kit-0.23.22-1.fc34.x86_64
p11-kit-trust-0.23.22-1.fc34.x86_64
pcre-8.44-3.fc34.x86_64
pcre2-10.36-2.fc34.x86_64
pcre2-syntax-10.36-2.fc34.noarch
popt-1.18-2.fc34.x86_64
publicsuffix-list-dafsa-20190417-4.fc33.noarch
python-pip-wheel-20.3.3-3.fc34.noarch
python-setuptools-wheel-51.1.2-1.fc34.noarch
python3-3.9.1-3.fc34.x86_64
python3-dateutil-1:2.8.1-2.fc33.noarch
python3-distro-1.5.0-4.fc33.noarch
python3-dnf-4.5.2-1.fc34.noarch
python3-dnf-plugins-core-4.0.18-1.fc34.noarch
python3-gpg-1.14.0-2.fc33.x86_64
python3-hawkey-0.55.2-1.fc34.x86_64
python3-libcomps-0.1.15-5.fc33.x86_64
python3-libdnf-0.55.2-1.fc34.x86_64
python3-libs-3.9.1-3.fc34.x86_64
python3-rpm-4.16.1.2-4.fc34.x86_64
python3-setuptools-51.1.2-1.fc34.noarch
python3-six-1.15.0-3.fc34.noarch
readline-8.1-1.fc34.x86_64
rpm-4.16.1.2-4.fc34.x86_64
rpm-build-libs-4.16.1.2-4.fc34.x86_64
rpm-libs-4.16.1.2-4.fc34.x86_64
rpm-sign-libs-4.16.1.2-4.fc34.x86_64
sed-4.8-6.fc34.x86_64
setup-2.13.7-2.fc33.noarch
shadow-utils-2:4.8.1-6.fc34.x86_64
sqlite-libs-3.34.0-1.fc34.x86_64
systemd-libs-247.2-1.fc34.x86_64
tpm2-tss-3.0.3-1.fc34.x86_64
tzdata-2020f-1.fc34.noarch
xz-libs-5.2.5-4.fc34.x86_64
zchunk-libs-1.1.9-1.fc34.x86_64
zlib-1.2.11-23.fc34.x86_64
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1611737311.604998/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 2.9
INFO: Mock Version: 2.9
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk
Copr repository 4.2 MB/s | 734 kB 00:00
fedora 21 MB/s | 73 MB 00:03
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
[1mbash [m x86_64 5.1.0-1.fc34 fedora 1.7 M
[1mbzip2 [m x86_64 1.0.8-4.fc33 fedora 52 k
[1mcoreutils [m x86_64 8.32-15.fc34 fedora 1.1 M
[1mcpio [m x86_64 2.13-8.fc33 fedora 273 k
[1mdiffutils [m x86_64 3.7-7.fc34 fedora 390 k
[1mfedora-release-common [m noarch 34-0.10 fedora 20 k
[1mfindutils [m x86_64 1:4.8.0-1.fc34 fedora 545 k
[1mgawk [m x86_64 5.1.0-2.fc33 fedora 1.0 M
[1mglibc-minimal-langpack [m x86_64 2.32.9000-26.fc34 fedora 110 k
[1mgrep [m x86_64 3.6-1.fc34 fedora 260 k
[1mgzip [m x86_64 1.10-3.fc33 fedora 152 k
[1minfo [m x86_64 6.7-8.fc33 fedora 228 k
[1mmake [m x86_64 1:4.3-2.fc33 fedora 539 k
[1mpatch [m x86_64 2.7.6-13.fc33 fedora 129 k
[1mredhat-rpm-config [m noarch 180-1.fc34 fedora 71 k
[1mrpm-build [m x86_64 4.16.1.2-4.fc34 fedora 107 k
[1msed [m x86_64 4.8-6.fc34 fedora 298 k
[1mshadow-utils [m x86_64 2:4.8.1-6.fc34 fedora 1.2 M
[1mtar [m x86_64 2:1.32-6.fc33 fedora 880 k
[1munzip [m x86_64 6.0-49.fc33 fedora 181 k
[1mutil-linux [m x86_64 2.36.1-3.fc34 fedora 2.5 M
[1mwhich [m x86_64 2.21-20.fc33 fedora 41 k
[1mxz [m x86_64 5.2.5-4.fc34 fedora 215 k
Installing dependencies:
[1malternatives [m x86_64 1.15-1.fc34 fedora 35 k
[1maudit-libs [m x86_64 3.0-1.fc34 fedora 113 k
[1mbasesystem [m noarch 11-10.fc33 fedora 6.8 k
[1mbinutils [m x86_64 2.35.1-24.fc34 fedora 5.3 M
[1mbinutils-gold [m x86_64 2.35.1-24.fc34 fedora 747 k
[1mbzip2-libs [m x86_64 1.0.8-4.fc33 fedora 40 k
[1mca-certificates [m noarch 2020.2.41-6.fc34 fedora 353 k
[1mcoreutils-common [m x86_64 8.32-15.fc34 fedora 2.0 M
[1mcracklib [m x86_64 2.9.6-24.fc33 fedora 83 k
[1mcrypto-policies [m noarch 20210118-1.gitb21c811.fc34 fedora 76 k
[1mcurl [m x86_64 7.74.0-2.fc34 fedora 300 k
[1mcyrus-sasl-lib [m x86_64 2.1.27-7.fc34 copr_base 101 k
[1mdwz [m x86_64 0.13-7.fc34 fedora 126 k
[1med [m x86_64 1.14.2-9.fc33 fedora 75 k
[1mefi-srpm-macros [m noarch 4-5.fc33 fedora 21 k
[1melfutils [m x86_64 0.182-2.fc34 fedora 525 k
[1melfutils-debuginfod-client [m x86_64 0.182-2.fc34 fedora 32 k
[1melfutils-default-yama-scope [m noarch 0.182-2.fc34 fedora 16 k
[1melfutils-libelf [m x86_64 0.182-2.fc34 fedora 193 k
[1melfutils-libs [m x86_64 0.182-2.fc34 fedora 265 k
[1mexpat [m x86_64 2.2.10-1.fc34 fedora 104 k
[1mfedora-gpg-keys [m noarch 34-0.8 fedora 107 k
[1mfedora-release [m noarch 34-0.10 fedora 11 k
[1mfedora-release-identity-basic[m
noarch 34-0.10 fedora 12 k
[1mfedora-repos [m noarch 34-0.8 fedora 11 k
[1mfedora-repos-rawhide [m noarch 34-0.8 fedora 10 k
[1mfile [m x86_64 5.39-4.fc34 fedora 51 k
[1mfile-libs [m x86_64 5.39-4.fc34 fedora 591 k
[1mfilesystem [m x86_64 3.14-4.fc34 fedora 1.1 M
[1mfonts-srpm-macros [m noarch 1:2.0.5-4.fc33 fedora 27 k
[1mfpc-srpm-macros [m noarch 1.3-2.fc33 fedora 7.6 k
[1mgc [m x86_64 8.0.4-4.fc33 fedora 104 k
[1mgdb-minimal [m x86_64 10.1-2.fc34 fedora 3.6 M
[1mghc-srpm-macros [m noarch 1.5.0-3.fc33 fedora 7.7 k
[1mglibc [m x86_64 2.32.9000-26.fc34 fedora 3.5 M
[1mglibc-common [m x86_64 2.32.9000-26.fc34 fedora 2.1 M
[1mgmp [m x86_64 1:6.2.0-5.fc34 fedora 320 k
[1mgnat-srpm-macros [m noarch 4-12.fc33 fedora 8.2 k
[1mgo-srpm-macros [m noarch 3.0.9-1.fc34 fedora 25 k
[1mguile22 [m x86_64 2.2.7-1.fc34 fedora 6.5 M
[1mkernel-srpm-macros [m noarch 1.0-3.fc33 fedora 7.2 k
[1mkeyutils-libs [m x86_64 1.6.1-1.fc34 fedora 31 k
[1mkrb5-libs [m x86_64 1.19-0.beta2.1.fc34 fedora 734 k
[1mlibacl [m x86_64 2.2.53-9.fc34 fedora 23 k
[1mlibarchive [m x86_64 3.5.1-1.fc34 fedora 391 k
[1mlibattr [m x86_64 2.4.48-10.fc33 fedora 18 k
[1mlibblkid [m x86_64 2.36.1-3.fc34 fedora 100 k
[1mlibbrotli [m x86_64 1.0.9-3.fc34 fedora 322 k
[1mlibcap [m x86_64 2.46-1.fc34 fedora 65 k
[1mlibcap-ng [m x86_64 0.8.2-1.fc34 fedora 32 k
[1mlibcom_err [m x86_64 1.45.6-4.fc33 fedora 27 k
[1mlibcurl [m x86_64 7.74.0-2.fc34 fedora 285 k
[1mlibdb [m x86_64 5.3.28-45.fc34 fedora 760 k
[1mlibeconf [m x86_64 0.3.8-4.fc33 fedora 24 k
[1mlibfdisk [m x86_64 2.36.1-3.fc34 fedora 151 k
[1mlibffi [m x86_64 3.1-27.fc34 fedora 33 k
[1mlibgcc [m x86_64 11.0.0-0.16.fc34 fedora 90 k
[1mlibgcrypt [m x86_64 1.8.7-1.fc34 fedora 476 k
[1mlibgomp [m x86_64 11.0.0-0.16.fc34 fedora 260 k
[1mlibgpg-error [m x86_64 1.41-1.fc34 fedora 212 k
[1mlibidn2 [m x86_64 2.3.0-4.fc34 fedora 104 k
[1mlibmetalink [m x86_64 0.1.3-13.fc33 fedora 31 k
[1mlibmount [m x86_64 2.36.1-3.fc34 fedora 131 k
[1mlibnghttp2 [m x86_64 1.42.0-1.fc34 fedora 76 k
[1mlibnsl2 [m x86_64 1.3.0-1.fc34 fedora 58 k
[1mlibpkgconf [m x86_64 1.7.3-5.fc34 fedora 36 k
[1mlibpsl [m x86_64 0.21.1-2.fc33 fedora 61 k
[1mlibpwquality [m x86_64 1.4.4-1.fc34 fedora 104 k
[1mlibselinux [m x86_64 3.2-0.rc1.1.fc34 fedora 84 k
[1mlibsemanage [m x86_64 3.2-0.rc1.1.fc34 fedora 116 k
[1mlibsepol [m x86_64 3.2-0.rc1.1.fc34 fedora 286 k
[1mlibsigsegv [m x86_64 2.13-1.fc34 fedora 27 k
[1mlibsmartcols [m x86_64 2.36.1-3.fc34 fedora 59 k
[1mlibssh [m x86_64 0.9.5-1.fc34 fedora 209 k
[1mlibssh-config [m noarch 0.9.5-1.fc34 fedora 11 k
[1mlibstdc++ [m x86_64 11.0.0-0.16.fc34 fedora 694 k
[1mlibtasn1 [m x86_64 4.16.0-3.fc33 fedora 75 k
[1mlibtirpc [m x86_64 1.3.1-0.fc34 fedora 95 k
[1mlibtool-ltdl [m x86_64 2.4.6-38.fc34 fedora 36 k
[1mlibunistring [m x86_64 0.9.10-9.fc33 fedora 516 k
[1mlibutempter [m x86_64 1.2.1-3.fc34 fedora 26 k
[1mlibuuid [m x86_64 2.36.1-3.fc34 fedora 24 k
[1mlibverto [m x86_64 0.3.1-2.fc34 fedora 21 k
[1mlibxcrypt [m x86_64 4.4.17-1.fc34 fedora 121 k
[1mlibxml2 [m x86_64 2.9.10-9.fc34 fedora 744 k
[1mlibzstd [m x86_64 1.4.7-1.fc34 fedora 340 k
[1mlua-libs [m x86_64 5.4.2-1.fc34 fedora 216 k
[1mlua-srpm-macros [m noarch 1-2.fc34 fedora 7.9 k
[1mlz4-libs [m x86_64 1.9.3-1.fc34 fedora 67 k
[1mmpfr [m x86_64 4.1.0-2.fc33 fedora 1.4 M
[1mncurses-base [m noarch 6.2-3.20200222.fc33 fedora 60 k
[1mncurses-libs [m x86_64 6.2-3.20200222.fc33 fedora 329 k
[1mnim-srpm-macros [m noarch 3-3.fc33 fedora 8.3 k
[1mocaml-srpm-macros [m noarch 6-3.fc33 fedora 7.7 k
[1mopenblas-srpm-macros [m noarch 2-8.fc33 fedora 7.2 k
[1mopenldap [m x86_64 2.4.57-1.fc34 fedora 261 k
[1mopenssl-libs [m x86_64 1:1.1.1i-1.fc34 fedora 1.4 M
[1mp11-kit [m x86_64 0.23.22-1.fc34 fedora 369 k
[1mp11-kit-trust [m x86_64 0.23.22-1.fc34 fedora 141 k
[1mpam [m x86_64 1.5.1-2.fc34 fedora 545 k
[1mpcre [m x86_64 8.44-3.fc34 fedora 200 k
[1mpcre2 [m x86_64 10.36-2.fc34 fedora 234 k
[1mpcre2-syntax [m noarch 10.36-2.fc34 fedora 143 k
[1mperl-srpm-macros [m noarch 1-38.fc33 fedora 8.3 k
[1mpkgconf [m x86_64 1.7.3-5.fc34 fedora 41 k
[1mpkgconf-m4 [m noarch 1.7.3-5.fc34 fedora 14 k
[1mpkgconf-pkg-config [m x86_64 1.7.3-5.fc34 fedora 10 k
[1mpopt [m x86_64 1.18-2.fc34 fedora 59 k
[1mpublicsuffix-list-dafsa [m noarch 20190417-4.fc33 fedora 55 k
[1mpython-srpm-macros [m noarch 3.9-11.fc34 fedora 20 k
[1mqt5-srpm-macros [m noarch 5.15.2-1.fc34 fedora 8.4 k
[1mreadline [m x86_64 8.1-1.fc34 fedora 216 k
[1mrpm [m x86_64 4.16.1.2-4.fc34 fedora 527 k
[1mrpm-build-libs [m x86_64 4.16.1.2-4.fc34 fedora 97 k
[1mrpm-libs [m x86_64 4.16.1.2-4.fc34 fedora 326 k
[1mrust-srpm-macros [m noarch 17-1.fc34 fedora 9.8 k
[1msetup [m noarch 2.13.7-2.fc33 fedora 142 k
[1msqlite-libs [m x86_64 3.34.0-1.fc34 fedora 626 k
[1msystemd-libs [m x86_64 247.2-1.fc34 fedora 546 k
[1mtzdata [m noarch 2020f-1.fc34 fedora 432 k
[1mxxhash-libs [m x86_64 0.8.0-1.fc33 fedora 41 k
[1mxz-libs [m x86_64 5.2.5-4.fc34 fedora 91 k
[1mzip [m x86_64 3.0-27.fc33 fedora 258 k
[1mzlib [m x86_64 1.2.11-23.fc34 fedora 92 k
[1mzstd [m x86_64 1.4.7-1.fc34 fedora 568 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 148 Packages
Total download size: 58 M
Installed size: 224 M
Downloading Packages:
(1/148): cyrus-sasl-lib-2.1.27-7.fc34.x86_64.rp 2.0 MB/s | 101 kB 00:00
(2/148): basesystem-11-10.fc33.noarch.rpm 93 kB/s | 6.8 kB 00:00
(3/148): alternatives-1.15-1.fc34.x86_64.rpm 244 kB/s | 35 kB 00:00
(4/148): audit-libs-3.0-1.fc34.x86_64.rpm 606 kB/s | 113 kB 00:00
(5/148): bash-5.1.0-1.fc34.x86_64.rpm 16 MB/s | 1.7 MB 00:00
(6/148): bzip2-1.0.8-4.fc33.x86_64.rpm 1.1 MB/s | 52 kB 00:00
(7/148): bzip2-libs-1.0.8-4.fc33.x86_64.rpm 3.3 MB/s | 40 kB 00:00
(8/148): binutils-gold-2.35.1-24.fc34.x86_64.rp 6.8 MB/s | 747 kB 00:00
(9/148): ca-certificates-2020.2.41-6.fc34.noarc 22 MB/s | 353 kB 00:00
(10/148): coreutils-8.32-15.fc34.x86_64.rpm 27 MB/s | 1.1 MB 00:00
(11/148): coreutils-common-8.32-15.fc34.x86_64. 44 MB/s | 2.0 MB 00:00
(12/148): binutils-2.35.1-24.fc34.x86_64.rpm 23 MB/s | 5.3 MB 00:00
(13/148): cracklib-2.9.6-24.fc33.x86_64.rpm 3.1 MB/s | 83 kB 00:00
(14/148): cpio-2.13-8.fc33.x86_64.rpm 6.0 MB/s | 273 kB 00:00
(15/148): crypto-policies-20210118-1.gitb21c811 4.7 MB/s | 76 kB 00:00
(16/148): curl-7.74.0-2.fc34.x86_64.rpm 18 MB/s | 300 kB 00:00
(17/148): diffutils-3.7-7.fc34.x86_64.rpm 9.7 MB/s | 390 kB 00:00
(18/148): ed-1.14.2-9.fc33.x86_64.rpm 2.6 MB/s | 75 kB 00:00
(19/148): dwz-0.13-7.fc34.x86_64.rpm 3.0 MB/s | 126 kB 00:00
(20/148): efi-srpm-macros-4-5.fc33.noarch.rpm 660 kB/s | 21 kB 00:00
(21/148): elfutils-0.182-2.fc34.x86_64.rpm 13 MB/s | 525 kB 00:00
(22/148): elfutils-debuginfod-client-0.182-2.fc 968 kB/s | 32 kB 00:00
(23/148): elfutils-default-yama-scope-0.182-2.f 1.0 MB/s | 16 kB 00:00
(24/148): elfutils-libelf-0.182-2.fc34.x86_64.r 14 MB/s | 193 kB 00:00
(25/148): elfutils-libs-0.182-2.fc34.x86_64.rpm 14 MB/s | 265 kB 00:00
(26/148): expat-2.2.10-1.fc34.x86_64.rpm 5.7 MB/s | 104 kB 00:00
(27/148): fedora-gpg-keys-34-0.8.noarch.rpm 8.3 MB/s | 107 kB 00:00
(28/148): fedora-release-34-0.10.noarch.rpm 757 kB/s | 11 kB 00:00
(29/148): fedora-release-identity-basic-34-0.10 994 kB/s | 12 kB 00:00
(30/148): fedora-release-common-34-0.10.noarch. 1.2 MB/s | 20 kB 00:00
(31/148): fedora-repos-34-0.8.noarch.rpm 742 kB/s | 11 kB 00:00
(32/148): fedora-repos-rawhide-34-0.8.noarch.rp 698 kB/s | 10 kB 00:00
(33/148): file-5.39-4.fc34.x86_64.rpm 2.0 MB/s | 51 kB 00:00
(34/148): file-libs-5.39-4.fc34.x86_64.rpm 26 MB/s | 591 kB 00:00
(35/148): filesystem-3.14-4.fc34.x86_64.rpm 35 MB/s | 1.1 MB 00:00
(36/148): findutils-4.8.0-1.fc34.x86_64.rpm 14 MB/s | 545 kB 00:00
(37/148): fonts-srpm-macros-2.0.5-4.fc33.noarch 917 kB/s | 27 kB 00:00
(38/148): fpc-srpm-macros-1.3-2.fc33.noarch.rpm 238 kB/s | 7.6 kB 00:00
(39/148): gawk-5.1.0-2.fc33.x86_64.rpm 44 MB/s | 1.0 MB 00:00
(40/148): gc-8.0.4-4.fc33.x86_64.rpm 4.4 MB/s | 104 kB 00:00
(41/148): ghc-srpm-macros-1.5.0-3.fc33.noarch.r 337 kB/s | 7.7 kB 00:00
(42/148): glibc-common-2.32.9000-26.fc34.x86_64 54 MB/s | 2.1 MB 00:00
(43/148): glibc-2.32.9000-26.fc34.x86_64.rpm 46 MB/s | 3.5 MB 00:00
(44/148): glibc-minimal-langpack-2.32.9000-26.f 6.3 MB/s | 110 kB 00:00
(45/148): gdb-minimal-10.1-2.fc34.x86_64.rpm 33 MB/s | 3.6 MB 00:00
(46/148): gmp-6.2.0-5.fc34.x86_64.rpm 13 MB/s | 320 kB 00:00
(47/148): gnat-srpm-macros-4-12.fc33.noarch.rpm 311 kB/s | 8.2 kB 00:00
(48/148): grep-3.6-1.fc34.x86_64.rpm 15 MB/s | 260 kB 00:00
(49/148): go-srpm-macros-3.0.9-1.fc34.noarch.rp 863 kB/s | 25 kB 00:00
(50/148): gzip-1.10-3.fc33.x86_64.rpm 5.2 MB/s | 152 kB 00:00
(51/148): kernel-srpm-macros-1.0-3.fc33.noarch. 302 kB/s | 7.2 kB 00:00
(52/148): keyutils-libs-1.6.1-1.fc34.x86_64.rpm 1.9 MB/s | 31 kB 00:00
(53/148): info-6.7-8.fc33.x86_64.rpm 3.2 MB/s | 228 kB 00:00
(54/148): guile22-2.2.7-1.fc34.x86_64.rpm 51 MB/s | 6.5 MB 00:00
(55/148): krb5-libs-1.19-0.beta2.1.fc34.x86_64. 15 MB/s | 734 kB 00:00
(56/148): libacl-2.2.53-9.fc34.x86_64.rpm 593 kB/s | 23 kB 00:00
(57/148): libblkid-2.36.1-3.fc34.x86_64.rpm 8.0 MB/s | 100 kB 00:00
(58/148): libattr-2.4.48-10.fc33.x86_64.rpm 1.2 MB/s | 18 kB 00:00
(59/148): libarchive-3.5.1-1.fc34.x86_64.rpm 19 MB/s | 391 kB 00:00
(60/148): libbrotli-1.0.9-3.fc34.x86_64.rpm 21 MB/s | 322 kB 00:00
(61/148): libcap-2.46-1.fc34.x86_64.rpm 4.2 MB/s | 65 kB 00:00
(62/148): libcap-ng-0.8.2-1.fc34.x86_64.rpm 2.1 MB/s | 32 kB 00:00
(63/148): libcom_err-1.45.6-4.fc33.x86_64.rpm 2.3 MB/s | 27 kB 00:00
(64/148): libcurl-7.74.0-2.fc34.x86_64.rpm 16 MB/s | 285 kB 00:00
(65/148): libdb-5.3.28-45.fc34.x86_64.rpm 33 MB/s | 760 kB 00:00
(66/148): libeconf-0.3.8-4.fc33.x86_64.rpm 1.1 MB/s | 24 kB 00:00
(67/148): libffi-3.1-27.fc34.x86_64.rpm 2.2 MB/s | 33 kB 00:00
(68/148): libgcc-11.0.0-0.16.fc34.x86_64.rpm 7.2 MB/s | 90 kB 00:00
(69/148): libfdisk-2.36.1-3.fc34.x86_64.rpm 5.0 MB/s | 151 kB 00:00
(70/148): libgcrypt-1.8.7-1.fc34.x86_64.rpm 24 MB/s | 476 kB 00:00
(71/148): libgomp-11.0.0-0.16.fc34.x86_64.rpm 15 MB/s | 260 kB 00:00
(72/148): libgpg-error-1.41-1.fc34.x86_64.rpm 12 MB/s | 212 kB 00:00
(73/148): libmetalink-0.1.3-13.fc33.x86_64.rpm 2.6 MB/s | 31 kB 00:00
(74/148): libidn2-2.3.0-4.fc34.x86_64.rpm 6.3 MB/s | 104 kB 00:00
(75/148): libmount-2.36.1-3.fc34.x86_64.rpm 8.1 MB/s | 131 kB 00:00
(76/148): libnghttp2-1.42.0-1.fc34.x86_64.rpm 6.1 MB/s | 76 kB 00:00
(77/148): libnsl2-1.3.0-1.fc34.x86_64.rpm 3.8 MB/s | 58 kB 00:00
(78/148): libpsl-0.21.1-2.fc33.x86_64.rpm 4.9 MB/s | 61 kB 00:00
(79/148): libselinux-3.2-0.rc1.1.fc34.x86_64.rp 6.8 MB/s | 84 kB 00:00
(80/148): libpwquality-1.4.4-1.fc34.x86_64.rpm 3.9 MB/s | 104 kB 00:00
(81/148): libpkgconf-1.7.3-5.fc34.x86_64.rpm 806 kB/s | 36 kB 00:00
(82/148): libsemanage-3.2-0.rc1.1.fc34.x86_64.r 8.1 MB/s | 116 kB 00:00
(83/148): libsepol-3.2-0.rc1.1.fc34.x86_64.rpm 16 MB/s | 286 kB 00:00
(84/148): libsmartcols-2.36.1-3.fc34.x86_64.rpm 4.9 MB/s | 59 kB 00:00
(85/148): libsigsegv-2.13-1.fc34.x86_64.rpm 1.8 MB/s | 27 kB 00:00
(86/148): libssh-config-0.9.5-1.fc34.noarch.rpm 985 kB/s | 11 kB 00:00
(87/148): libssh-0.9.5-1.fc34.x86_64.rpm 11 MB/s | 209 kB 00:00
(88/148): libstdc++-11.0.0-0.16.fc34.x86_64.rpm 33 MB/s | 694 kB 00:00
(89/148): libtasn1-4.16.0-3.fc33.x86_64.rpm 6.0 MB/s | 75 kB 00:00
(90/148): libtirpc-1.3.1-0.fc34.x86_64.rpm 6.0 MB/s | 95 kB 00:00
(91/148): libunistring-0.9.10-9.fc33.x86_64.rpm 30 MB/s | 516 kB 00:00
(92/148): libutempter-1.2.1-3.fc34.x86_64.rpm 1.2 MB/s | 26 kB 00:00
(93/148): libtool-ltdl-2.4.6-38.fc34.x86_64.rpm 1.1 MB/s | 36 kB 00:00
(94/148): libuuid-2.36.1-3.fc34.x86_64.rpm 1.9 MB/s | 24 kB 00:00
(95/148): libverto-0.3.1-2.fc34.x86_64.rpm 1.4 MB/s | 21 kB 00:00
(96/148): libxcrypt-4.4.17-1.fc34.x86_64.rpm 7.1 MB/s | 121 kB 00:00
(97/148): libxml2-2.9.10-9.fc34.x86_64.rpm 33 MB/s | 744 kB 00:00
(98/148): libzstd-1.4.7-1.fc34.x86_64.rpm 19 MB/s | 340 kB 00:00
(99/148): lua-libs-5.4.2-1.fc34.x86_64.rpm 11 MB/s | 216 kB 00:00
(100/148): lua-srpm-macros-1-2.fc34.noarch.rpm 387 kB/s | 7.9 kB 00:00
(101/148): lz4-libs-1.9.3-1.fc34.x86_64.rpm 4.3 MB/s | 67 kB 00:00
(102/148): ncurses-base-6.2-3.20200222.fc33.noa 3.9 MB/s | 60 kB 00:00
(103/148): mpfr-4.1.0-2.fc33.x86_64.rpm 45 MB/s | 1.4 MB 00:00
(104/148): make-4.3-2.fc33.x86_64.rpm 12 MB/s | 539 kB 00:00
(105/148): ncurses-libs-6.2-3.20200222.fc33.x86 18 MB/s | 329 kB 00:00
(106/148): nim-srpm-macros-3-3.fc33.noarch.rpm 332 kB/s | 8.3 kB 00:00
(107/148): ocaml-srpm-macros-6-3.fc33.noarch.rp 218 kB/s | 7.7 kB 00:00
(108/148): openblas-srpm-macros-2-8.fc33.noarch 222 kB/s | 7.2 kB 00:00
(109/148): openldap-2.4.57-1.fc34.x86_64.rpm 15 MB/s | 261 kB 00:00
(110/148): p11-kit-trust-0.23.22-1.fc34.x86_64. 10 MB/s | 141 kB 00:00
(111/148): p11-kit-0.23.22-1.fc34.x86_64.rpm 18 MB/s | 369 kB 00:00
(112/148): openssl-libs-1.1.1i-1.fc34.x86_64.rp 45 MB/s | 1.4 MB 00:00
(113/148): pcre-8.44-3.fc34.x86_64.rpm 12 MB/s | 200 kB 00:00
(114/148): patch-2.7.6-13.fc33.x86_64.rpm 3.8 MB/s | 129 kB 00:00
(115/148): pam-1.5.1-2.fc34.x86_64.rpm 13 MB/s | 545 kB 00:00
(116/148): pcre2-10.36-2.fc34.x86_64.rpm 14 MB/s | 234 kB 00:00
(117/148): pcre2-syntax-10.36-2.fc34.noarch.rpm 8.9 MB/s | 143 kB 00:00
(118/148): perl-srpm-macros-1-38.fc33.noarch.rp 321 kB/s | 8.3 kB 00:00
(119/148): pkgconf-1.7.3-5.fc34.x86_64.rpm 1.7 MB/s | 41 kB 00:00
(120/148): pkgconf-m4-1.7.3-5.fc34.noarch.rpm 440 kB/s | 14 kB 00:00
(121/148): popt-1.18-2.fc34.x86_64.rpm 3.8 MB/s | 59 kB 00:00
(122/148): pkgconf-pkg-config-1.7.3-5.fc34.x86_ 438 kB/s | 10 kB 00:00
(123/148): publicsuffix-list-dafsa-20190417-4.f 3.6 MB/s | 55 kB 00:00
(124/148): qt5-srpm-macros-5.15.2-1.fc34.noarch 335 kB/s | 8.4 kB 00:00
(125/148): python-srpm-macros-3.9-11.fc34.noarc 691 kB/s | 20 kB 00:00
(126/148): readline-8.1-1.fc34.x86_64.rpm 12 MB/s | 216 kB 00:00
(127/148): rpm-4.16.1.2-4.fc34.x86_64.rpm 27 MB/s | 527 kB 00:00
(128/148): rpm-build-4.16.1.2-4.fc34.x86_64.rpm 3.8 MB/s | 107 kB 00:00
(129/148): redhat-rpm-config-180-1.fc34.noarch. 1.9 MB/s | 71 kB 00:00
(130/148): rpm-build-libs-4.16.1.2-4.fc34.x86_6 5.7 MB/s | 97 kB 00:00
(131/148): rpm-libs-4.16.1.2-4.fc34.x86_64.rpm 18 MB/s | 326 kB 00:00
(132/148): sed-4.8-6.fc34.x86_64.rpm 20 MB/s | 298 kB 00:00
(133/148): rust-srpm-macros-17-1.fc34.noarch.rp 363 kB/s | 9.8 kB 00:00
(134/148): setup-2.13.7-2.fc33.noarch.rpm 7.8 MB/s | 142 kB 00:00
(135/148): shadow-utils-4.8.1-6.fc34.x86_64.rpm 49 MB/s | 1.2 MB 00:00
(136/148): sqlite-libs-3.34.0-1.fc34.x86_64.rpm 29 MB/s | 626 kB 00:00
(137/148): systemd-libs-247.2-1.fc34.x86_64.rpm 23 MB/s | 546 kB 00:00
(138/148): tzdata-2020f-1.fc34.noarch.rpm 23 MB/s | 432 kB 00:00
(139/148): tar-1.32-6.fc33.x86_64.rpm 22 MB/s | 880 kB 00:00
(140/148): unzip-6.0-49.fc33.x86_64.rpm 6.6 MB/s | 181 kB 00:00
(141/148): which-2.21-20.fc33.x86_64.rpm 1.6 MB/s | 41 kB 00:00
(142/148): xxhash-libs-0.8.0-1.fc33.x86_64.rpm 1.1 MB/s | 41 kB 00:00
(143/148): util-linux-2.36.1-3.fc34.x86_64.rpm 41 MB/s | 2.5 MB 00:00
(144/148): xz-libs-5.2.5-4.fc34.x86_64.rpm 5.8 MB/s | 91 kB 00:00
(145/148): xz-5.2.5-4.fc34.x86_64.rpm 7.0 MB/s | 215 kB 00:00
(146/148): zlib-1.2.11-23.fc34.x86_64.rpm 5.8 MB/s | 92 kB 00:00
(147/148): zip-3.0-27.fc33.x86_64.rpm 9.8 MB/s | 258 kB 00:00
(148/148): zstd-1.4.7-1.fc34.x86_64.rpm 9.1 MB/s | 568 kB 00:00
--------------------------------------------------------------------------------
Total 31 MB/s | 58 MB 00:01
warning: /var/lib/mock/fedora-rawhide-x86_64-1611737311.604998/root/var/cache/dnf/fedora-2d95c80a1fa0a67d/packages/alternatives-1.15-1.fc34.x86_64.rpm: Header V4 RSA/SHA256 Signature, key ID 45719a39: NOKEY
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x45719A39:
Userid : "Fedora (34) <fedora-34-primary@fedoraproject.org>"
Fingerprint: 8C5B A699 0BDB 26E1 9F2A 1A80 1161 AE69 4571 9A39
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-34-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-34-primary (0x45719A39) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x9570FF31:
Userid : "Fedora (33) <fedora-33-primary@fedoraproject.org>"
Fingerprint: 963A 2BEB 0200 9608 FE67 EA42 49FD 7749 9570 FF31
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-33-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.14-4.fc34.x86_64 1/1
Preparing : 1/1
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Verifying : publicsuffix-list-dafsa-20190417-4.fc33.noarch 123/148
Verifying : python-srpm-macros-3.9-11.fc34.noarch 124/148
Verifying : qt5-srpm-macros-5.15.2-1.fc34.noarch 125/148
Verifying : readline-8.1-1.fc34.x86_64 126/148
Verifying : redhat-rpm-config-180-1.fc34.noarch 127/148
Verifying : rpm-4.16.1.2-4.fc34.x86_64 128/148
Verifying : rpm-build-4.16.1.2-4.fc34.x86_64 129/148
Verifying : rpm-build-libs-4.16.1.2-4.fc34.x86_64 130/148
Verifying : rpm-libs-4.16.1.2-4.fc34.x86_64 131/148
Verifying : rust-srpm-macros-17-1.fc34.noarch 132/148
Verifying : sed-4.8-6.fc34.x86_64 133/148
Verifying : setup-2.13.7-2.fc33.noarch 134/148
Verifying : shadow-utils-2:4.8.1-6.fc34.x86_64 135/148
Verifying : sqlite-libs-3.34.0-1.fc34.x86_64 136/148
Verifying : systemd-libs-247.2-1.fc34.x86_64 137/148
Verifying : tar-2:1.32-6.fc33.x86_64 138/148
Verifying : tzdata-2020f-1.fc34.noarch 139/148
Verifying : unzip-6.0-49.fc33.x86_64 140/148
Verifying : util-linux-2.36.1-3.fc34.x86_64 141/148
Verifying : which-2.21-20.fc33.x86_64 142/148
Verifying : xxhash-libs-0.8.0-1.fc33.x86_64 143/148
Verifying : xz-5.2.5-4.fc34.x86_64 144/148
Verifying : xz-libs-5.2.5-4.fc34.x86_64 145/148
Verifying : zip-3.0-27.fc33.x86_64 146/148
Verifying : zlib-1.2.11-23.fc34.x86_64 147/148
Verifying : zstd-1.4.7-1.fc34.x86_64 148/148
Installed:
alternatives-1.15-1.fc34.x86_64
audit-libs-3.0-1.fc34.x86_64
basesystem-11-10.fc33.noarch
bash-5.1.0-1.fc34.x86_64
binutils-2.35.1-24.fc34.x86_64
binutils-gold-2.35.1-24.fc34.x86_64
bzip2-1.0.8-4.fc33.x86_64
bzip2-libs-1.0.8-4.fc33.x86_64
ca-certificates-2020.2.41-6.fc34.noarch
coreutils-8.32-15.fc34.x86_64
coreutils-common-8.32-15.fc34.x86_64
cpio-2.13-8.fc33.x86_64
cracklib-2.9.6-24.fc33.x86_64
crypto-policies-20210118-1.gitb21c811.fc34.noarch
curl-7.74.0-2.fc34.x86_64
cyrus-sasl-lib-2.1.27-7.fc34.x86_64
diffutils-3.7-7.fc34.x86_64
dwz-0.13-7.fc34.x86_64
ed-1.14.2-9.fc33.x86_64
efi-srpm-macros-4-5.fc33.noarch
elfutils-0.182-2.fc34.x86_64
elfutils-debuginfod-client-0.182-2.fc34.x86_64
elfutils-default-yama-scope-0.182-2.fc34.noarch
elfutils-libelf-0.182-2.fc34.x86_64
elfutils-libs-0.182-2.fc34.x86_64
expat-2.2.10-1.fc34.x86_64
fedora-gpg-keys-34-0.8.noarch
fedora-release-34-0.10.noarch
fedora-release-common-34-0.10.noarch
fedora-release-identity-basic-34-0.10.noarch
fedora-repos-34-0.8.noarch
fedora-repos-rawhide-34-0.8.noarch
file-5.39-4.fc34.x86_64
file-libs-5.39-4.fc34.x86_64
filesystem-3.14-4.fc34.x86_64
findutils-1:4.8.0-1.fc34.x86_64
fonts-srpm-macros-1:2.0.5-4.fc33.noarch
fpc-srpm-macros-1.3-2.fc33.noarch
gawk-5.1.0-2.fc33.x86_64
gc-8.0.4-4.fc33.x86_64
gdb-minimal-10.1-2.fc34.x86_64
ghc-srpm-macros-1.5.0-3.fc33.noarch
glibc-2.32.9000-26.fc34.x86_64
glibc-common-2.32.9000-26.fc34.x86_64
glibc-minimal-langpack-2.32.9000-26.fc34.x86_64
gmp-1:6.2.0-5.fc34.x86_64
gnat-srpm-macros-4-12.fc33.noarch
go-srpm-macros-3.0.9-1.fc34.noarch
grep-3.6-1.fc34.x86_64
guile22-2.2.7-1.fc34.x86_64
gzip-1.10-3.fc33.x86_64
info-6.7-8.fc33.x86_64
kernel-srpm-macros-1.0-3.fc33.noarch
keyutils-libs-1.6.1-1.fc34.x86_64
krb5-libs-1.19-0.beta2.1.fc34.x86_64
libacl-2.2.53-9.fc34.x86_64
libarchive-3.5.1-1.fc34.x86_64
libattr-2.4.48-10.fc33.x86_64
libblkid-2.36.1-3.fc34.x86_64
libbrotli-1.0.9-3.fc34.x86_64
libcap-2.46-1.fc34.x86_64
libcap-ng-0.8.2-1.fc34.x86_64
libcom_err-1.45.6-4.fc33.x86_64
libcurl-7.74.0-2.fc34.x86_64
libdb-5.3.28-45.fc34.x86_64
libeconf-0.3.8-4.fc33.x86_64
libfdisk-2.36.1-3.fc34.x86_64
libffi-3.1-27.fc34.x86_64
libgcc-11.0.0-0.16.fc34.x86_64
libgcrypt-1.8.7-1.fc34.x86_64
libgomp-11.0.0-0.16.fc34.x86_64
libgpg-error-1.41-1.fc34.x86_64
libidn2-2.3.0-4.fc34.x86_64
libmetalink-0.1.3-13.fc33.x86_64
libmount-2.36.1-3.fc34.x86_64
libnghttp2-1.42.0-1.fc34.x86_64
libnsl2-1.3.0-1.fc34.x86_64
libpkgconf-1.7.3-5.fc34.x86_64
libpsl-0.21.1-2.fc33.x86_64
libpwquality-1.4.4-1.fc34.x86_64
libselinux-3.2-0.rc1.1.fc34.x86_64
libsemanage-3.2-0.rc1.1.fc34.x86_64
libsepol-3.2-0.rc1.1.fc34.x86_64
libsigsegv-2.13-1.fc34.x86_64
libsmartcols-2.36.1-3.fc34.x86_64
libssh-0.9.5-1.fc34.x86_64
libssh-config-0.9.5-1.fc34.noarch
libstdc++-11.0.0-0.16.fc34.x86_64
libtasn1-4.16.0-3.fc33.x86_64
libtirpc-1.3.1-0.fc34.x86_64
libtool-ltdl-2.4.6-38.fc34.x86_64
libunistring-0.9.10-9.fc33.x86_64
libutempter-1.2.1-3.fc34.x86_64
libuuid-2.36.1-3.fc34.x86_64
libverto-0.3.1-2.fc34.x86_64
libxcrypt-4.4.17-1.fc34.x86_64
libxml2-2.9.10-9.fc34.x86_64
libzstd-1.4.7-1.fc34.x86_64
lua-libs-5.4.2-1.fc34.x86_64
lua-srpm-macros-1-2.fc34.noarch
lz4-libs-1.9.3-1.fc34.x86_64
make-1:4.3-2.fc33.x86_64
mpfr-4.1.0-2.fc33.x86_64
ncurses-base-6.2-3.20200222.fc33.noarch
ncurses-libs-6.2-3.20200222.fc33.x86_64
nim-srpm-macros-3-3.fc33.noarch
ocaml-srpm-macros-6-3.fc33.noarch
openblas-srpm-macros-2-8.fc33.noarch
openldap-2.4.57-1.fc34.x86_64
openssl-libs-1:1.1.1i-1.fc34.x86_64
p11-kit-0.23.22-1.fc34.x86_64
p11-kit-trust-0.23.22-1.fc34.x86_64
pam-1.5.1-2.fc34.x86_64
patch-2.7.6-13.fc33.x86_64
pcre-8.44-3.fc34.x86_64
pcre2-10.36-2.fc34.x86_64
pcre2-syntax-10.36-2.fc34.noarch
perl-srpm-macros-1-38.fc33.noarch
pkgconf-1.7.3-5.fc34.x86_64
pkgconf-m4-1.7.3-5.fc34.noarch
pkgconf-pkg-config-1.7.3-5.fc34.x86_64
popt-1.18-2.fc34.x86_64
publicsuffix-list-dafsa-20190417-4.fc33.noarch
python-srpm-macros-3.9-11.fc34.noarch
qt5-srpm-macros-5.15.2-1.fc34.noarch
readline-8.1-1.fc34.x86_64
redhat-rpm-config-180-1.fc34.noarch
rpm-4.16.1.2-4.fc34.x86_64
rpm-build-4.16.1.2-4.fc34.x86_64
rpm-build-libs-4.16.1.2-4.fc34.x86_64
rpm-libs-4.16.1.2-4.fc34.x86_64
rust-srpm-macros-17-1.fc34.noarch
sed-4.8-6.fc34.x86_64
setup-2.13.7-2.fc33.noarch
shadow-utils-2:4.8.1-6.fc34.x86_64
sqlite-libs-3.34.0-1.fc34.x86_64
systemd-libs-247.2-1.fc34.x86_64
tar-2:1.32-6.fc33.x86_64
tzdata-2020f-1.fc34.noarch
unzip-6.0-49.fc33.x86_64
util-linux-2.36.1-3.fc34.x86_64
which-2.21-20.fc33.x86_64
xxhash-libs-0.8.0-1.fc33.x86_64
xz-5.2.5-4.fc34.x86_64
xz-libs-5.2.5-4.fc34.x86_64
zip-3.0-27.fc33.x86_64
zlib-1.2.11-23.fc34.x86_64
zstd-1.4.7-1.fc34.x86_64
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libmount-2.36.1-3.fc34.x86_64
elfutils-libelf-0.182-2.fc34.x86_64
rpm-4.16.1.2-4.fc34.x86_64
tar-1.32-6.fc33.x86_64
tzdata-2020f-1.fc34.noarch
libcap-2.46-1.fc34.x86_64
rpm-libs-4.16.1.2-4.fc34.x86_64
xz-5.2.5-4.fc34.x86_64
libpwquality-1.4.4-1.fc34.x86_64
ghc-srpm-macros-1.5.0-3.fc33.noarch
libgomp-11.0.0-0.16.fc34.x86_64
libattr-2.4.48-10.fc33.x86_64
gpg-pubkey-45719a39-5f2c0192
dwz-0.13-7.fc34.x86_64
libnghttp2-1.42.0-1.fc34.x86_64
gmp-6.2.0-5.fc34.x86_64
kernel-srpm-macros-1.0-3.fc33.noarch
openblas-srpm-macros-2-8.fc33.noarch
gpg-pubkey-9570ff31-5e3006fb
ncurses-base-6.2-3.20200222.fc33.noarch
glibc-2.32.9000-26.fc34.x86_64
fedora-repos-34-0.8.noarch
audit-libs-3.0-1.fc34.x86_64
info-6.7-8.fc33.x86_64
gawk-5.1.0-2.fc33.x86_64
libdb-5.3.28-45.fc34.x86_64
ncurses-libs-6.2-3.20200222.fc33.x86_64
qt5-srpm-macros-5.15.2-1.fc34.noarch
libfdisk-2.36.1-3.fc34.x86_64
libcom_err-1.45.6-4.fc33.x86_64
libverto-0.3.1-2.fc34.x86_64
libsigsegv-2.13-1.fc34.x86_64
p11-kit-trust-0.23.22-1.fc34.x86_64
gdb-minimal-10.1-2.fc34.x86_64
lua-srpm-macros-1-2.fc34.noarch
libselinux-3.2-0.rc1.1.fc34.x86_64
libgpg-error-1.41-1.fc34.x86_64
libarchive-3.5.1-1.fc34.x86_64
fedora-release-common-34-0.10.noarch
which-2.21-20.fc33.x86_64
fpc-srpm-macros-1.3-2.fc33.noarch
basesystem-11-10.fc33.noarch
libmetalink-0.1.3-13.fc33.x86_64
libgcrypt-1.8.7-1.fc34.x86_64
elfutils-libs-0.182-2.fc34.x86_64
cracklib-2.9.6-24.fc33.x86_64
publicsuffix-list-dafsa-20190417-4.fc33.noarch
guile22-2.2.7-1.fc34.x86_64
libgcc-11.0.0-0.16.fc34.x86_64
pcre-8.44-3.fc34.x86_64
libtasn1-4.16.0-3.fc33.x86_64
grep-3.6-1.fc34.x86_64
file-libs-5.39-4.fc34.x86_64
libunistring-0.9.10-9.fc33.x86_64
gnat-srpm-macros-4-12.fc33.noarch
fonts-srpm-macros-2.0.5-4.fc33.noarch
libtirpc-1.3.1-0.fc34.x86_64
python-srpm-macros-3.9-11.fc34.noarch
findutils-4.8.0-1.fc34.x86_64
p11-kit-0.23.22-1.fc34.x86_64
filesystem-3.14-4.fc34.x86_64
binutils-2.35.1-24.fc34.x86_64
zlib-1.2.11-23.fc34.x86_64
libxml2-2.9.10-9.fc34.x86_64
nim-srpm-macros-3-3.fc33.noarch
cyrus-sasl-lib-2.1.27-7.fc34.x86_64
perl-srpm-macros-1-38.fc33.noarch
libsepol-3.2-0.rc1.1.fc34.x86_64
fedora-release-identity-basic-34-0.10.noarch
libbrotli-1.0.9-3.fc34.x86_64
alternatives-1.15-1.fc34.x86_64
setup-2.13.7-2.fc33.noarch
elfutils-0.182-2.fc34.x86_64
ca-certificates-2020.2.41-6.fc34.noarch
shadow-utils-4.8.1-6.fc34.x86_64
elfutils-debuginfod-client-0.182-2.fc34.x86_64
ocaml-srpm-macros-6-3.fc33.noarch
redhat-rpm-config-180-1.fc34.noarch
libzstd-1.4.7-1.fc34.x86_64
libidn2-2.3.0-4.fc34.x86_64
libcap-ng-0.8.2-1.fc34.x86_64
sed-4.8-6.fc34.x86_64
libsmartcols-2.36.1-3.fc34.x86_64
pkgconf-pkg-config-1.7.3-5.fc34.x86_64
openssl-libs-1.1.1i-1.fc34.x86_64
coreutils-8.32-15.fc34.x86_64
fedora-release-34-0.10.noarch
crypto-policies-20210118-1.gitb21c811.fc34.noarch
rpm-build-4.16.1.2-4.fc34.x86_64
xz-libs-5.2.5-4.fc34.x86_64
elfutils-default-yama-scope-0.182-2.fc34.noarch
file-5.39-4.fc34.x86_64
libtool-ltdl-2.4.6-38.fc34.x86_64
libnsl2-1.3.0-1.fc34.x86_64
zstd-1.4.7-1.fc34.x86_64
keyutils-libs-1.6.1-1.fc34.x86_64
lua-libs-5.4.2-1.fc34.x86_64
rpm-build-libs-4.16.1.2-4.fc34.x86_64
lz4-libs-1.9.3-1.fc34.x86_64
bash-5.1.0-1.fc34.x86_64
expat-2.2.10-1.fc34.x86_64
ed-1.14.2-9.fc33.x86_64
zip-3.0-27.fc33.x86_64
libutempter-1.2.1-3.fc34.x86_64
patch-2.7.6-13.fc33.x86_64
libpsl-0.21.1-2.fc33.x86_64
pkgconf-1.7.3-5.fc34.x86_64
krb5-libs-1.19-0.beta2.1.fc34.x86_64
libssh-config-0.9.5-1.fc34.noarch
go-srpm-macros-3.0.9-1.fc34.noarch
util-linux-2.36.1-3.fc34.x86_64
xxhash-libs-0.8.0-1.fc33.x86_64
pam-1.5.1-2.fc34.x86_64
efi-srpm-macros-4-5.fc33.noarch
libpkgconf-1.7.3-5.fc34.x86_64
bzip2-libs-1.0.8-4.fc33.x86_64
curl-7.74.0-2.fc34.x86_64
pcre2-10.36-2.fc34.x86_64
libffi-3.1-27.fc34.x86_64
gc-8.0.4-4.fc33.x86_64
sqlite-libs-3.34.0-1.fc34.x86_64
glibc-minimal-langpack-2.32.9000-26.fc34.x86_64
bzip2-1.0.8-4.fc33.x86_64
pcre2-syntax-10.36-2.fc34.noarch
mpfr-4.1.0-2.fc33.x86_64
libcurl-7.74.0-2.fc34.x86_64
gzip-1.10-3.fc33.x86_64
libssh-0.9.5-1.fc34.x86_64
libsemanage-3.2-0.rc1.1.fc34.x86_64
libstdc++-11.0.0-0.16.fc34.x86_64
libxcrypt-4.4.17-1.fc34.x86_64
libuuid-2.36.1-3.fc34.x86_64
binutils-gold-2.35.1-24.fc34.x86_64
pkgconf-m4-1.7.3-5.fc34.noarch
popt-1.18-2.fc34.x86_64
readline-8.1-1.fc34.x86_64
libacl-2.2.53-9.fc34.x86_64
cpio-2.13-8.fc33.x86_64
unzip-6.0-49.fc33.x86_64
fedora-gpg-keys-34-0.8.noarch
glibc-common-2.32.9000-26.fc34.x86_64
coreutils-common-8.32-15.fc34.x86_64
rust-srpm-macros-17-1.fc34.noarch
openldap-2.4.57-1.fc34.x86_64
make-4.3-2.fc33.x86_64
libeconf-0.3.8-4.fc33.x86_64
fedora-repos-rawhide-34-0.8.noarch
diffutils-3.7-7.fc34.x86_64
systemd-libs-247.2-1.fc34.x86_64
libblkid-2.36.1-3.fc34.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1611273600
Wrote: /builddir/build/SRPMS/rdkit-2019.03.3-13.fc34.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1611737311.604998/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1611737311.604998/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1611737311.604998/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/tmp/copr-rpmbuild-osq25n8d/obtain-sources/rdkit/rdkit.spec) Config(child) 1 minutes 34 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
INFO: unmounting tmpfs.
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/rdkit-2019.03.3-13.fc34.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1611737408.650207 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 2.9 starting (python version = 3.9.1, NVR = mock-2.9-1.fc33)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/rdkit-2019.03.3-13.fc34.src.rpm) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1611737408.650207/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start(bootstrap): unpacking root cache
Finish(bootstrap): unpacking root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 2.9
INFO: Mock Version: 2.9
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1611737408.650207/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 2.9
INFO: Mock Version: 2.9
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk
Copr repository 184 kB/s | 3.6 kB 00:00
Copr repository 16 MB/s | 742 kB 00:00
fedora 96 kB/s | 13 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for rdkit-2019.03.3-13.fc34.src.rpm
Start: build setup for rdkit-2019.03.3-13.fc34.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1611273600
Wrote: /builddir/build/SRPMS/rdkit-2019.03.3-13.fc34.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk
Copr repository 201 kB/s | 3.6 kB 00:00
fedora 296 kB/s | 13 kB 00:00
Package make-1:4.3-2.fc33.x86_64 is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing:
[1mbison [m x86_64 3.7.4-1.fc34 fedora 925 k
[1mboost-devel [m x86_64 1.73.0-11.fc34 fedora 11 M
[1mcairo-devel [m x86_64 1.17.4-1.fc34 fedora 190 k
[1mcatch-devel [m x86_64 2.13.4-1.fc34 fedora 525 k
[1mchrpath [m x86_64 0.16-14.fc34 fedora 30 k
[1mcmake [m x86_64 3.19.3-1.fc34 fedora 5.7 M
[1meigen3-devel [m noarch 3.3.9-3.fc34 fedora 963 k
[1mflex [m x86_64 2.6.4-6.fc34 fedora 312 k
[1mgcc-c++ [m x86_64 11.0.0-0.16.fc34 fedora 12 M
[1minchi-devel [m x86_64 1.0.5-10.fc33 fedora 23 k
[1mjava-11-openjdk-devel [m x86_64 1:11.0.10.0.8-0.2.ea.fc34 fedora 3.3 M
[1mjunit [m noarch 1:4.13-2.fc34 fedora 342 k
[1mlibpq-devel [m x86_64 13.1-1.fc34 fedora 93 k
[1mpostgresql-server-devel [m x86_64 12.4-3.fc34 fedora 1.0 M
[1mpython3-devel [m x86_64 3.9.1-3.fc34 fedora 235 k
[1mpython3-numpy [m x86_64 1:1.20.0-0.1.rc2.fc34 fedora 4.8 M
[1mswig [m x86_64 4.0.2-3.fc34 fedora 1.4 M
Installing dependencies:
[1malsa-lib [m x86_64 1.2.4-4.fc34 fedora 475 k
[1mannobin [m x86_64 9.58-1.fc34 fedora 135 k
[1mavahi-libs [m x86_64 0.8-6.fc34 fedora 67 k
[1mboost [m x86_64 1.73.0-11.fc34 fedora 13 k
[1mboost-atomic [m x86_64 1.73.0-11.fc34 fedora 15 k
[1mboost-chrono [m x86_64 1.73.0-11.fc34 fedora 26 k
[1mboost-container [m x86_64 1.73.0-11.fc34 fedora 38 k
[1mboost-context [m x86_64 1.73.0-11.fc34 fedora 16 k
[1mboost-contract [m x86_64 1.73.0-11.fc34 fedora 48 k
[1mboost-coroutine [m x86_64 1.73.0-11.fc34 fedora 34 k
[1mboost-date-time [m x86_64 1.73.0-11.fc34 fedora 15 k
[1mboost-fiber [m x86_64 1.73.0-11.fc34 fedora 41 k
[1mboost-filesystem [m x86_64 1.73.0-11.fc34 fedora 57 k
[1mboost-graph [m x86_64 1.73.0-11.fc34 fedora 104 k
[1mboost-iostreams [m x86_64 1.73.0-11.fc34 fedora 39 k
[1mboost-locale [m x86_64 1.73.0-11.fc34 fedora 222 k
[1mboost-log [m x86_64 1.73.0-11.fc34 fedora 415 k
[1mboost-math [m x86_64 1.73.0-11.fc34 fedora 214 k
[1mboost-nowide [m x86_64 1.73.0-11.fc34 fedora 17 k
[1mboost-numpy3 [m x86_64 1.73.0-11.fc34 fedora 29 k
[1mboost-program-options [m x86_64 1.73.0-11.fc34 fedora 110 k
[1mboost-python3 [m x86_64 1.73.0-11.fc34 fedora 98 k
[1mboost-random [m x86_64 1.73.0-11.fc34 fedora 26 k
[1mboost-regex [m x86_64 1.73.0-11.fc34 fedora 289 k
[1mboost-serialization [m x86_64 1.73.0-11.fc34 fedora 134 k
[1mboost-stacktrace [m x86_64 1.73.0-11.fc34 fedora 29 k
[1mboost-system [m x86_64 1.73.0-11.fc34 fedora 15 k
[1mboost-test [m x86_64 1.73.0-11.fc34 fedora 239 k
[1mboost-thread [m x86_64 1.73.0-11.fc34 fedora 62 k
[1mboost-timer [m x86_64 1.73.0-11.fc34 fedora 26 k
[1mboost-type_erasure [m x86_64 1.73.0-11.fc34 fedora 32 k
[1mboost-wave [m x86_64 1.73.0-11.fc34 fedora 240 k
[1mbrotli [m x86_64 1.0.9-3.fc34 fedora 324 k
[1mbrotli-devel [m x86_64 1.0.9-3.fc34 fedora 32 k
[1mbzip2-devel [m x86_64 1.0.8-4.fc33 fedora 214 k
[1mcairo [m x86_64 1.17.4-1.fc34 fedora 670 k
[1mclang [m x86_64 11.1.0-0.3.rc2.fc34 fedora 93 k
[1mclang-devel [m x86_64 11.1.0-0.3.rc2.fc34 fedora 1.9 M
[1mclang-libs [m x86_64 11.1.0-0.3.rc2.fc34 fedora 22 M
[1mclang-resource-filesystem [m x86_64 11.1.0-0.3.rc2.fc34 fedora 13 k
[1mclang-tools-extra [m x86_64 11.1.0-0.3.rc2.fc34 fedora 14 M
[1mcmake-data [m noarch 3.19.3-1.fc34 fedora 1.5 M
[1mcmake-filesystem [m x86_64 3.19.3-1.fc34 fedora 16 k
[1mcmake-rpm-macros [m noarch 3.19.3-1.fc34 fedora 15 k
[1mcopy-jdk-configs [m noarch 3.7-7.fc33 fedora 24 k
[1mcpp [m x86_64 11.0.0-0.16.fc34 fedora 10 M
[1mcups-libs [m x86_64 1:2.3.3op1-1.fc34 fedora 274 k
[1mdbus-libs [m x86_64 1:1.12.20-2.fc33 fedora 154 k
[1mdejavu-sans-fonts [m noarch 2.37-15.fc34 fedora 1.3 M
[1memacs-filesystem [m noarch 1:27.1-2.fc34 fedora 8.2 k
[1mflexiblas [m x86_64 3.0.4-2.fc34 fedora 31 k
[1mflexiblas-netlib [m x86_64 3.0.4-2.fc34 fedora 3.0 M
[1mflexiblas-openblas-openmp [m x86_64 3.0.4-2.fc34 fedora 17 k
[1mfontconfig [m x86_64 2.13.93-4.fc34 fedora 275 k
[1mfontconfig-devel [m x86_64 2.13.93-4.fc34 fedora 129 k
[1mfonts-filesystem [m noarch 1:2.0.5-4.fc33 fedora 8.7 k
[1mfreetype [m x86_64 2.10.4-1.fc34 fedora 391 k
[1mfreetype-devel [m x86_64 2.10.4-1.fc34 fedora 1.1 M
[1mgcc [m x86_64 11.0.0-0.16.fc34 fedora 31 M
[1mgdbm-libs [m x86_64 1:1.19-1.fc34 fedora 54 k
[1mgettext [m x86_64 0.21-3.fc34 fedora 1.1 M
[1mgettext-libs [m x86_64 0.21-3.fc34 fedora 308 k
[1mgiflib [m x86_64 5.2.1-6.fc33 fedora 49 k
[1mglib2 [m x86_64 2.67.1-2.fc34 fedora 2.7 M
[1mglib2-devel [m x86_64 2.67.1-2.fc34 fedora 472 k
[1mglibc-devel [m x86_64 2.32.9000-26.fc34 fedora 1.1 M
[1mglibc-headers-x86 [m noarch 2.32.9000-26.fc34 fedora 514 k
[1mgnutls [m x86_64 3.6.15-2.fc34 fedora 925 k
[1mgraphite2 [m x86_64 1.3.14-6.fc34 fedora 95 k
[1mhamcrest-core [m noarch 1.3-30.fc33 fedora 50 k
[1mharfbuzz [m x86_64 2.7.4-1.fc34 fedora 635 k
[1minchi-libs [m x86_64 1.0.5-10.fc33 fedora 542 k
[1misl [m x86_64 0.16.1-12.fc33 fedora 876 k
[1mjava-11-openjdk [m x86_64 1:11.0.10.0.8-0.2.ea.fc34 fedora 251 k
[1mjava-11-openjdk-headless [m x86_64 1:11.0.10.0.8-0.2.ea.fc34 fedora 38 M
[1mjavapackages-filesystem [m noarch 5.3.0-14.fc34 fedora 11 k
[1mjsoncpp [m x86_64 1.9.4-2.fc34 fedora 96 k
[1mkernel-headers [m x86_64 5.11.0-0.rc4.git0.1.fc34 fedora 1.4 M
[1mkeyutils-libs-devel [m x86_64 1.6.1-1.fc34 fedora 52 k
[1mkrb5-devel [m x86_64 1.19-0.beta2.1.fc34 fedora 141 k
[1mlangpacks-core-font-en [m noarch 3.0-6.fc34 fedora 9.7 k
[1mlcms2 [m x86_64 2.11-2.fc33 fedora 169 k
[1mlibX11 [m x86_64 1.7.0-2.fc34 fedora 660 k
[1mlibX11-common [m noarch 1.7.0-2.fc34 fedora 153 k
[1mlibX11-devel [m x86_64 1.7.0-2.fc34 fedora 940 k
[1mlibX11-xcb [m x86_64 1.7.0-2.fc34 fedora 11 k
[1mlibXau [m x86_64 1.0.9-5.fc34 fedora 31 k
[1mlibXau-devel [m x86_64 1.0.9-5.fc34 fedora 13 k
[1mlibXcomposite [m x86_64 0.4.5-4.fc34 fedora 23 k
[1mlibXext [m x86_64 1.3.4-5.fc34 fedora 39 k
[1mlibXext-devel [m x86_64 1.3.4-5.fc34 fedora 73 k
[1mlibXi [m x86_64 1.7.10-5.fc34 fedora 38 k
[1mlibXrender [m x86_64 0.9.10-13.fc34 fedora 27 k
[1mlibXrender-devel [m x86_64 0.9.10-13.fc34 fedora 16 k
[1mlibXtst [m x86_64 1.2.3-13.fc34 fedora 20 k
[1mlibblkid-devel [m x86_64 2.36.1-3.fc34 fedora 14 k
[1mlibcom_err-devel [m x86_64 1.45.6-4.fc33 fedora 16 k
[1mlibedit [m x86_64 3.1-33.20191231cvs.fc33 fedora 106 k
[1mlibedit-devel [m x86_64 3.1-33.20191231cvs.fc33 fedora 40 k
[1mlibevent [m x86_64 2.1.12-2.fc34 fedora 265 k
[1mlibffi-devel [m x86_64 3.1-27.fc34 fedora 24 k
[1mlibfontenc [m x86_64 1.1.3-14.fc34 fedora 31 k
[1mlibgfortran [m x86_64 11.0.0-0.16.fc34 fedora 802 k
[1mlibicu [m x86_64 67.1-4.fc33 fedora 9.7 M
[1mlibicu-devel [m x86_64 67.1-4.fc33 fedora 831 k
[1mlibjpeg-turbo [m x86_64 2.0.5-5.fc33 fedora 168 k
[1mlibkadm5 [m x86_64 1.19-0.beta2.1.fc34 fedora 86 k
[1mlibmount-devel [m x86_64 2.36.1-3.fc34 fedora 15 k
[1mlibmpc [m x86_64 1.2.1-1.fc34 fedora 63 k
[1mlibpng [m x86_64 2:1.6.37-6.fc34 fedora 120 k
[1mlibpng-devel [m x86_64 2:1.6.37-6.fc34 fedora 291 k
[1mlibpq [m x86_64 13.1-1.fc34 fedora 209 k
[1mlibquadmath [m x86_64 11.0.0-0.16.fc34 fedora 194 k
[1mlibquadmath-devel [m x86_64 11.0.0-0.16.fc34 fedora 32 k
[1mlibselinux-devel [m x86_64 3.2-0.rc1.1.fc34 fedora 148 k
[1mlibsepol-devel [m x86_64 3.2-0.rc1.1.fc34 fedora 49 k
[1mlibstdc++-devel [m x86_64 11.0.0-0.16.fc34 fedora 2.2 M
[1mlibtextstyle [m x86_64 0.21-3.fc34 fedora 91 k
[1mlibuv [m x86_64 1:1.40.0-1.fc34 fedora 151 k
[1mlibverto-devel [m x86_64 0.3.1-2.fc34 fedora 14 k
[1mlibxcb [m x86_64 1.13.1-6.fc34 fedora 230 k
[1mlibxcb-devel [m x86_64 1.13.1-6.fc34 fedora 1.0 M
[1mlibxcrypt-devel [m x86_64 4.4.17-1.fc34 fedora 32 k
[1mlibxml2-devel [m x86_64 2.9.10-9.fc34 fedora 852 k
[1mlksctp-tools [m x86_64 1.0.18-7.fc34 fedora 96 k
[1mllvm [m x86_64 11.1.0-0.2.rc2.fc34 fedora 12 M
[1mllvm-devel [m x86_64 11.1.0-0.2.rc2.fc34 fedora 2.9 M
[1mllvm-libs [m x86_64 11.1.0-0.2.rc2.fc34 fedora 22 M
[1mllvm-static [m x86_64 11.1.0-0.2.rc2.fc34 fedora 39 M
[1mllvm-test [m x86_64 11.1.0-0.2.rc2.fc34 fedora 93 M
[1mlua [m x86_64 5.4.2-1.fc34 fedora 189 k
[1mlua-posix [m x86_64 35.0-2.fc33 fedora 132 k
[1mm4 [m x86_64 1.4.18-16.fc34 fedora 211 k
[1mncurses-c++-libs [m x86_64 6.2-3.20200222.fc33 fedora 37 k
[1mncurses-devel [m x86_64 6.2-3.20200222.fc33 fedora 510 k
[1mnettle [m x86_64 3.7-1.fc34 fedora 396 k
[1mopenblas [m x86_64 0.3.12-1.fc34 fedora 31 k
[1mopenblas-openmp [m x86_64 0.3.12-1.fc34 fedora 4.6 M
[1mpcre-cpp [m x86_64 8.44-3.fc34 fedora 26 k
[1mpcre-devel [m x86_64 8.44-3.fc34 fedora 471 k
[1mpcre-utf16 [m x86_64 8.44-3.fc34 fedora 186 k
[1mpcre-utf32 [m x86_64 8.44-3.fc34 fedora 177 k
[1mpcre2-devel [m x86_64 10.36-2.fc34 fedora 476 k
[1mpcre2-utf16 [m x86_64 10.36-2.fc34 fedora 213 k
[1mpcre2-utf32 [m x86_64 10.36-2.fc34 fedora 203 k
[1mpixman [m x86_64 0.40.0-2.fc33 fedora 275 k
[1mpixman-devel [m x86_64 0.40.0-2.fc33 fedora 17 k
[1mpython-pip-wheel [m noarch 20.3.3-3.fc34 fedora 1.3 M
[1mpython-rpm-macros [m noarch 3.9-11.fc34 fedora 14 k
[1mpython-setuptools-wheel [m noarch 51.1.2-1.fc34 fedora 471 k
[1mpython3 [m x86_64 3.9.1-3.fc34 fedora 28 k
[1mpython3-libs [m x86_64 3.9.1-3.fc34 fedora 7.7 M
[1mpython3-lit [m noarch 0.11.1-2.rc2.fc34 fedora 146 k
[1mpython3-rpm-generators [m noarch 11-12.fc34 fedora 29 k
[1mpython3-rpm-macros [m noarch 3.9-11.fc34 fedora 13 k
[1mpython3-setuptools [m noarch 51.1.2-1.fc34 fedora 843 k
[1mrhash [m x86_64 1.4.0-2.fc33 fedora 183 k
[1mttmkfdir [m x86_64 3.0.9-62.fc33 fedora 52 k
[1mtzdata-java [m noarch 2020f-1.fc34 fedora 158 k
[1mvim-filesystem [m noarch 2:8.2.2311-1.fc34 fedora 23 k
[1mxml-common [m noarch 0.6.3-55.fc33 fedora 31 k
[1mxorg-x11-font-utils [m x86_64 1:7.5-47.fc34 fedora 101 k
[1mxorg-x11-fonts-Type1 [m noarch 7.5-26.fc34 fedora 500 k
[1mxorg-x11-proto-devel [m noarch 2019.1-5.fc34 fedora 261 k
[1mxz-devel [m x86_64 5.2.5-4.fc34 fedora 51 k
[1mzlib-devel [m x86_64 1.2.11-23.fc34 fedora 44 k
Transaction Summary
================================================================================
Install 183 Packages
Total download size: 390 M
Installed size: 1.6 G
Downloading Packages:
(1/183): avahi-libs-0.8-6.fc34.x86_64.rpm 520 kB/s | 67 kB 00:00
(2/183): annobin-9.58-1.fc34.x86_64.rpm 967 kB/s | 135 kB 00:00
(3/183): alsa-lib-1.2.4-4.fc34.x86_64.rpm 2.5 MB/s | 475 kB 00:00
(4/183): boost-atomic-1.73.0-11.fc34.x86_64.rpm 1.2 MB/s | 15 kB 00:00
(5/183): bison-3.7.4-1.fc34.x86_64.rpm 12 MB/s | 925 kB 00:00
(6/183): boost-1.73.0-11.fc34.x86_64.rpm 175 kB/s | 13 kB 00:00
(7/183): boost-chrono-1.73.0-11.fc34.x86_64.rpm 917 kB/s | 26 kB 00:00
(8/183): boost-container-1.73.0-11.fc34.x86_64. 1.6 MB/s | 38 kB 00:00
(9/183): boost-contract-1.73.0-11.fc34.x86_64.r 2.6 MB/s | 48 kB 00:00
(10/183): boost-coroutine-1.73.0-11.fc34.x86_64 2.2 MB/s | 34 kB 00:00
(11/183): boost-context-1.73.0-11.fc34.x86_64.r 377 kB/s | 16 kB 00:00
(12/183): boost-date-time-1.73.0-11.fc34.x86_64 770 kB/s | 15 kB 00:00
(13/183): boost-fiber-1.73.0-11.fc34.x86_64.rpm 1.9 MB/s | 41 kB 00:00
(14/183): boost-filesystem-1.73.0-11.fc34.x86_6 3.3 MB/s | 57 kB 00:00
(15/183): boost-iostreams-1.73.0-11.fc34.x86_64 1.3 MB/s | 39 kB 00:00
(16/183): boost-graph-1.73.0-11.fc34.x86_64.rpm 2.5 MB/s | 104 kB 00:00
(17/183): boost-locale-1.73.0-11.fc34.x86_64.rp 7.6 MB/s | 222 kB 00:00
(18/183): boost-math-1.73.0-11.fc34.x86_64.rpm 8.7 MB/s | 214 kB 00:00
(19/183): boost-log-1.73.0-11.fc34.x86_64.rpm 8.0 MB/s | 415 kB 00:00
(20/183): boost-nowide-1.73.0-11.fc34.x86_64.rp 1.7 MB/s | 17 kB 00:00
(21/183): boost-program-options-1.73.0-11.fc34. 3.9 MB/s | 110 kB 00:00
(22/183): boost-numpy3-1.73.0-11.fc34.x86_64.rp 912 kB/s | 29 kB 00:00
(23/183): boost-python3-1.73.0-11.fc34.x86_64.r 1.6 MB/s | 98 kB 00:00
(24/183): boost-random-1.73.0-11.fc34.x86_64.rp 429 kB/s | 26 kB 00:00
(25/183): boost-devel-1.73.0-11.fc34.x86_64.rpm 40 MB/s | 11 MB 00:00
(26/183): boost-serialization-1.73.0-11.fc34.x8 2.9 MB/s | 134 kB 00:00
(27/183): boost-regex-1.73.0-11.fc34.x86_64.rpm 5.8 MB/s | 289 kB 00:00
(28/183): boost-stacktrace-1.73.0-11.fc34.x86_6 1.6 MB/s | 29 kB 00:00
(29/183): boost-thread-1.73.0-11.fc34.x86_64.rp 4.3 MB/s | 62 kB 00:00
(30/183): boost-test-1.73.0-11.fc34.x86_64.rpm 6.6 MB/s | 239 kB 00:00
(31/183): boost-system-1.73.0-11.fc34.x86_64.rp 362 kB/s | 15 kB 00:00
(32/183): boost-timer-1.73.0-11.fc34.x86_64.rpm 1.3 MB/s | 26 kB 00:00
(33/183): boost-type_erasure-1.73.0-11.fc34.x86 1.2 MB/s | 32 kB 00:00
(34/183): boost-wave-1.73.0-11.fc34.x86_64.rpm 7.9 MB/s | 240 kB 00:00
(35/183): brotli-devel-1.0.9-3.fc34.x86_64.rpm 1.8 MB/s | 32 kB 00:00
(36/183): bzip2-devel-1.0.8-4.fc33.x86_64.rpm 15 MB/s | 214 kB 00:00
(37/183): brotli-1.0.9-3.fc34.x86_64.rpm 8.7 MB/s | 324 kB 00:00
(38/183): cairo-devel-1.17.4-1.fc34.x86_64.rpm 12 MB/s | 190 kB 00:00
(39/183): cairo-1.17.4-1.fc34.x86_64.rpm 28 MB/s | 670 kB 00:00
(40/183): catch-devel-2.13.4-1.fc34.x86_64.rpm 14 MB/s | 525 kB 00:00
(41/183): chrpath-0.16-14.fc34.x86_64.rpm 1.1 MB/s | 30 kB 00:00
(42/183): clang-11.1.0-0.3.rc2.fc34.x86_64.rpm 4.2 MB/s | 93 kB 00:00
(43/183): clang-resource-filesystem-11.1.0-0.3. 1.1 MB/s | 13 kB 00:00
(44/183): clang-devel-11.1.0-0.3.rc2.fc34.x86_6 22 MB/s | 1.9 MB 00:00
(45/183): cmake-3.19.3-1.fc34.x86_64.rpm 29 MB/s | 5.7 MB 00:00
(46/183): cmake-data-3.19.3-1.fc34.noarch.rpm 26 MB/s | 1.5 MB 00:00
(47/183): cmake-filesystem-3.19.3-1.fc34.x86_64 1.2 MB/s | 16 kB 00:00
(48/183): cmake-rpm-macros-3.19.3-1.fc34.noarch 727 kB/s | 15 kB 00:00
(49/183): clang-tools-extra-11.1.0-0.3.rc2.fc34 31 MB/s | 14 MB 00:00
(50/183): copy-jdk-configs-3.7-7.fc33.noarch.rp 315 kB/s | 24 kB 00:00
(51/183): cups-libs-2.3.3op1-1.fc34.x86_64.rpm 11 MB/s | 274 kB 00:00
(52/183): dbus-libs-1.12.20-2.fc33.x86_64.rpm 9.2 MB/s | 154 kB 00:00
(53/183): clang-libs-11.1.0-0.3.rc2.fc34.x86_64 33 MB/s | 22 MB 00:00
(54/183): dejavu-sans-fonts-2.37-15.fc34.noarch 8.6 MB/s | 1.3 MB 00:00
(55/183): emacs-filesystem-27.1-2.fc34.noarch.r 797 kB/s | 8.2 kB 00:00
(56/183): cpp-11.0.0-0.16.fc34.x86_64.rpm 35 MB/s | 10 MB 00:00
(57/183): flex-2.6.4-6.fc34.x86_64.rpm 3.9 MB/s | 312 kB 00:00
(58/183): eigen3-devel-3.3.9-3.fc34.noarch.rpm 8.8 MB/s | 963 kB 00:00
(59/183): flexiblas-3.0.4-2.fc34.x86_64.rpm 1.5 MB/s | 31 kB 00:00
(60/183): fontconfig-2.13.93-4.fc34.x86_64.rpm 20 MB/s | 275 kB 00:00
(61/183): flexiblas-openblas-openmp-3.0.4-2.fc3 549 kB/s | 17 kB 00:00
(62/183): fontconfig-devel-2.13.93-4.fc34.x86_6 6.3 MB/s | 129 kB 00:00
(63/183): freetype-2.10.4-1.fc34.x86_64.rpm 25 MB/s | 391 kB 00:00
(64/183): fonts-filesystem-2.0.5-4.fc33.noarch. 241 kB/s | 8.7 kB 00:00
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(66/183): freetype-devel-2.10.4-1.fc34.x86_64.r 9.1 MB/s | 1.1 MB 00:00
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Total 66 MB/s | 390 MB 00:05
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Running transaction
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boost-serialization-1.73.0-11.fc34.x86_64
boost-stacktrace-1.73.0-11.fc34.x86_64
boost-system-1.73.0-11.fc34.x86_64
boost-test-1.73.0-11.fc34.x86_64
boost-thread-1.73.0-11.fc34.x86_64
boost-timer-1.73.0-11.fc34.x86_64
boost-type_erasure-1.73.0-11.fc34.x86_64
boost-wave-1.73.0-11.fc34.x86_64
brotli-1.0.9-3.fc34.x86_64
brotli-devel-1.0.9-3.fc34.x86_64
bzip2-devel-1.0.8-4.fc33.x86_64
cairo-1.17.4-1.fc34.x86_64
cairo-devel-1.17.4-1.fc34.x86_64
catch-devel-2.13.4-1.fc34.x86_64
chrpath-0.16-14.fc34.x86_64
clang-11.1.0-0.3.rc2.fc34.x86_64
clang-devel-11.1.0-0.3.rc2.fc34.x86_64
clang-libs-11.1.0-0.3.rc2.fc34.x86_64
clang-resource-filesystem-11.1.0-0.3.rc2.fc34.x86_64
clang-tools-extra-11.1.0-0.3.rc2.fc34.x86_64
cmake-3.19.3-1.fc34.x86_64
cmake-data-3.19.3-1.fc34.noarch
cmake-filesystem-3.19.3-1.fc34.x86_64
cmake-rpm-macros-3.19.3-1.fc34.noarch
copy-jdk-configs-3.7-7.fc33.noarch
cpp-11.0.0-0.16.fc34.x86_64
cups-libs-1:2.3.3op1-1.fc34.x86_64
dbus-libs-1:1.12.20-2.fc33.x86_64
dejavu-sans-fonts-2.37-15.fc34.noarch
eigen3-devel-3.3.9-3.fc34.noarch
emacs-filesystem-1:27.1-2.fc34.noarch
flex-2.6.4-6.fc34.x86_64
flexiblas-3.0.4-2.fc34.x86_64
flexiblas-netlib-3.0.4-2.fc34.x86_64
flexiblas-openblas-openmp-3.0.4-2.fc34.x86_64
fontconfig-2.13.93-4.fc34.x86_64
fontconfig-devel-2.13.93-4.fc34.x86_64
fonts-filesystem-1:2.0.5-4.fc33.noarch
freetype-2.10.4-1.fc34.x86_64
freetype-devel-2.10.4-1.fc34.x86_64
gcc-11.0.0-0.16.fc34.x86_64
gcc-c++-11.0.0-0.16.fc34.x86_64
gdbm-libs-1:1.19-1.fc34.x86_64
gettext-0.21-3.fc34.x86_64
gettext-libs-0.21-3.fc34.x86_64
giflib-5.2.1-6.fc33.x86_64
glib2-2.67.1-2.fc34.x86_64
glib2-devel-2.67.1-2.fc34.x86_64
glibc-devel-2.32.9000-26.fc34.x86_64
glibc-headers-x86-2.32.9000-26.fc34.noarch
gnutls-3.6.15-2.fc34.x86_64
graphite2-1.3.14-6.fc34.x86_64
hamcrest-core-1.3-30.fc33.noarch
harfbuzz-2.7.4-1.fc34.x86_64
inchi-devel-1.0.5-10.fc33.x86_64
inchi-libs-1.0.5-10.fc33.x86_64
isl-0.16.1-12.fc33.x86_64
java-11-openjdk-1:11.0.10.0.8-0.2.ea.fc34.x86_64
java-11-openjdk-devel-1:11.0.10.0.8-0.2.ea.fc34.x86_64
java-11-openjdk-headless-1:11.0.10.0.8-0.2.ea.fc34.x86_64
javapackages-filesystem-5.3.0-14.fc34.noarch
jsoncpp-1.9.4-2.fc34.x86_64
junit-1:4.13-2.fc34.noarch
kernel-headers-5.11.0-0.rc4.git0.1.fc34.x86_64
keyutils-libs-devel-1.6.1-1.fc34.x86_64
krb5-devel-1.19-0.beta2.1.fc34.x86_64
langpacks-core-font-en-3.0-6.fc34.noarch
lcms2-2.11-2.fc33.x86_64
libX11-1.7.0-2.fc34.x86_64
libX11-common-1.7.0-2.fc34.noarch
libX11-devel-1.7.0-2.fc34.x86_64
libX11-xcb-1.7.0-2.fc34.x86_64
libXau-1.0.9-5.fc34.x86_64
libXau-devel-1.0.9-5.fc34.x86_64
libXcomposite-0.4.5-4.fc34.x86_64
libXext-1.3.4-5.fc34.x86_64
libXext-devel-1.3.4-5.fc34.x86_64
libXi-1.7.10-5.fc34.x86_64
libXrender-0.9.10-13.fc34.x86_64
libXrender-devel-0.9.10-13.fc34.x86_64
libXtst-1.2.3-13.fc34.x86_64
libblkid-devel-2.36.1-3.fc34.x86_64
libcom_err-devel-1.45.6-4.fc33.x86_64
libedit-3.1-33.20191231cvs.fc33.x86_64
libedit-devel-3.1-33.20191231cvs.fc33.x86_64
libevent-2.1.12-2.fc34.x86_64
libffi-devel-3.1-27.fc34.x86_64
libfontenc-1.1.3-14.fc34.x86_64
libgfortran-11.0.0-0.16.fc34.x86_64
libicu-67.1-4.fc33.x86_64
libicu-devel-67.1-4.fc33.x86_64
libjpeg-turbo-2.0.5-5.fc33.x86_64
libkadm5-1.19-0.beta2.1.fc34.x86_64
libmount-devel-2.36.1-3.fc34.x86_64
libmpc-1.2.1-1.fc34.x86_64
libpng-2:1.6.37-6.fc34.x86_64
libpng-devel-2:1.6.37-6.fc34.x86_64
libpq-13.1-1.fc34.x86_64
libpq-devel-13.1-1.fc34.x86_64
libquadmath-11.0.0-0.16.fc34.x86_64
libquadmath-devel-11.0.0-0.16.fc34.x86_64
libselinux-devel-3.2-0.rc1.1.fc34.x86_64
libsepol-devel-3.2-0.rc1.1.fc34.x86_64
libstdc++-devel-11.0.0-0.16.fc34.x86_64
libtextstyle-0.21-3.fc34.x86_64
libuv-1:1.40.0-1.fc34.x86_64
libverto-devel-0.3.1-2.fc34.x86_64
libxcb-1.13.1-6.fc34.x86_64
libxcb-devel-1.13.1-6.fc34.x86_64
libxcrypt-devel-4.4.17-1.fc34.x86_64
libxml2-devel-2.9.10-9.fc34.x86_64
lksctp-tools-1.0.18-7.fc34.x86_64
llvm-11.1.0-0.2.rc2.fc34.x86_64
llvm-devel-11.1.0-0.2.rc2.fc34.x86_64
llvm-libs-11.1.0-0.2.rc2.fc34.x86_64
llvm-static-11.1.0-0.2.rc2.fc34.x86_64
llvm-test-11.1.0-0.2.rc2.fc34.x86_64
lua-5.4.2-1.fc34.x86_64
lua-posix-35.0-2.fc33.x86_64
m4-1.4.18-16.fc34.x86_64
ncurses-c++-libs-6.2-3.20200222.fc33.x86_64
ncurses-devel-6.2-3.20200222.fc33.x86_64
nettle-3.7-1.fc34.x86_64
openblas-0.3.12-1.fc34.x86_64
openblas-openmp-0.3.12-1.fc34.x86_64
pcre-cpp-8.44-3.fc34.x86_64
pcre-devel-8.44-3.fc34.x86_64
pcre-utf16-8.44-3.fc34.x86_64
pcre-utf32-8.44-3.fc34.x86_64
pcre2-devel-10.36-2.fc34.x86_64
pcre2-utf16-10.36-2.fc34.x86_64
pcre2-utf32-10.36-2.fc34.x86_64
pixman-0.40.0-2.fc33.x86_64
pixman-devel-0.40.0-2.fc33.x86_64
postgresql-server-devel-12.4-3.fc34.x86_64
python-pip-wheel-20.3.3-3.fc34.noarch
python-rpm-macros-3.9-11.fc34.noarch
python-setuptools-wheel-51.1.2-1.fc34.noarch
python3-3.9.1-3.fc34.x86_64
python3-devel-3.9.1-3.fc34.x86_64
python3-libs-3.9.1-3.fc34.x86_64
python3-lit-0.11.1-2.rc2.fc34.noarch
python3-numpy-1:1.20.0-0.1.rc2.fc34.x86_64
python3-rpm-generators-11-12.fc34.noarch
python3-rpm-macros-3.9-11.fc34.noarch
python3-setuptools-51.1.2-1.fc34.noarch
rhash-1.4.0-2.fc33.x86_64
swig-4.0.2-3.fc34.x86_64
ttmkfdir-3.0.9-62.fc33.x86_64
tzdata-java-2020f-1.fc34.noarch
vim-filesystem-2:8.2.2311-1.fc34.noarch
xml-common-0.6.3-55.fc33.noarch
xorg-x11-font-utils-1:7.5-47.fc34.x86_64
xorg-x11-fonts-Type1-7.5-26.fc34.noarch
xorg-x11-proto-devel-2019.1-5.fc34.noarch
xz-devel-5.2.5-4.fc34.x86_64
zlib-devel-1.2.11-23.fc34.x86_64
Complete!
Finish: build setup for rdkit-2019.03.3-13.fc34.src.rpm
Start: rpmbuild rdkit-2019.03.3-13.fc34.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1611273600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.3aTAKq
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2019_03_3
+ /usr/bin/mkdir -p rdkit-Release_2019_03_3
+ cd rdkit-Release_2019_03_3
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2019_03_3.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv rdkit-Release_2019_03_3 python3
+ pushd python3
~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
+ echo 'Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
Hunk #1 succeeded at 169 (offset 71 lines).
+ echo 'Patch #1 (rdkit-2018.03-do_not_install_sping.patch):'
Patch #1 (rdkit-2018.03-do_not_install_sping.patch):
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 274 (offset 56 lines).
Hunk #2 succeeded at 282 (offset 56 lines).
Patch #2 (rdkit-Release_2019_03_3-gcc10.patch):
+ echo 'Patch #2 (rdkit-Release_2019_03_3-gcc10.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file Code/GraphMol/catch_sgroups.cpp
patching file Code/GraphMol/testSGroup.cpp
+ rm -rf rdkit/sping
+ cp -pr license.txt ReleaseNotes.md ../
+ popd
~/build/BUILD/rdkit-Release_2019_03_3
+ find python3 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python3|'
+ find python3 -name test_list.py
+ xargs sed -i 's/"python"/"python3"/g'
+ find python3 -name test_list.py
+ xargs sed -i 's/'\''python'\''/'\''python3'\''/g'
+ sed -i.orig s/python/python3/g python3/Projects/DbCLI/TestDbCLI.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0JflAz
+ umask 022
+ cd /builddir/build/BUILD
~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
+ cd rdkit-Release_2019_03_3
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ pushd python3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python39 -D CATCH_DIR:FILEPATH=/usr/include/catch2 . -B .
-- The C compiler identification is GNU 11.0.0
-- The CXX compiler identification is GNU 11.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Searching 16 bit integer - Using unsigned short
-- Check if the system is big endian - little endian
-- Found Catch2: /usr/include/catch2
CATCH: /usr/include/catch2
CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:426 (message):
The package name passed to `find_package_handle_standard_args` (INCHI) does
not match the name of the calling package (Inchi). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
Code/cmake/Modules/FindInchi.cmake:21 (find_package_handle_standard_args)
CMakeLists.txt:216 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found INCHI: /usr/lib64/libinchi.so
-- Found PythonInterp: /usr/bin/python3 (found version "3.9.1")
-- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.1")
Python Install directory /usr/lib64/python3.9/site-packages
PYTHON Py_ENABLE_SHARED: 1
PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found Boost: /usr/include (found suitable version "1.73.0", minimum required is "1.56.0") found components: serialization
-- Found PostgreSQL: /usr/lib64/libpq.so (found version "13.1")
== Using strict rotor definition
-- Found Boost: /usr/include (found suitable version "1.73.0", minimum required is "1.56.0") found components: system iostreams regex
== Updating Filters.cpp from pains file
== Done updating pains files
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.7.3")
-- Checking for module 'cairo'
-- Found cairo, version 1.17.4
-- Found Cairo: /usr/include/cairo
postgres: /usr/include;/usr/include/pgsql/server
=====================================================================
After building, check
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/pgsql_install.sh
for correctness of installation paths. If everything is OK, gain
administrator privileges, stop the PostgreSQL service, run
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/pgsql_install.sh
to install the PostgreSQL RDKit cartridge, then start again
the PostgreSQL service
=====================================================================
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
INCLUDE_INSTALL_DIR
LIB_INSTALL_DIR
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3
+ make -j2
/usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 -B/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2019_03_3/python3//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
Scanning dependencies of target catch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build
Scanning dependencies of target inchi_support
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2019.03.3 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers && /usr/bin/g++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/BitVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseBitVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
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[ 2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/ExplicitBitVect.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.cpp:15:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 2%] Linking CXX shared library ../../lib/libRDKitRDBoost.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2019.03.3 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2019.03.3 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/testRDValue.cpp
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In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/testRDValue.cpp:5:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h: In function 'bool RDKit::isSerializable(const RDKit::Dict::Pair&, const CustomPropHandlerVec&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:353:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
353 | }
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:354:5: note: here
354 | default:
| ^~~~~~~
[ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
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/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteValueVect.cpp
[ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/FPBReader.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/testDict.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/MultiFPBReader.cpp
[ 4%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2019.03.3 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/RDBase.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/testMatrices.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/RDBase.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 5%] Linking CXX executable testMatrices
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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Scanning dependencies of target Catalogs
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/g++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/Catalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/g++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CatalogParams.cpp
[ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/g++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CatalogEntry.cpp
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2019.03.3 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query/test.cpp
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/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testQuery.dir/test.cpp.o -o testQuery -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 7%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/DistPicker.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/MaxMinPicker.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/HierarchicalClusterPicker.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2019.03.3 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKithc.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2019.03.3 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh && /usr/bin/g++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/Clustering.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/Clustering.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target testDataStructs
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make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 10%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/g++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target cDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DataStructs.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp: In function 'void test5DiscreteVectOps2()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:477:19: warning: implicitly-declared 'RDKit::DiscreteValueVect& RDKit::DiscreteValueVect::operator=(const RDKit::DiscreteValueVect&)' is deprecated [-Wdeprecated-copy]
477 | vect5 = vect1 - vect2;
| ^~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:22:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteValueVect.h:50:3: note: because 'RDKit::DiscreteValueVect' has user-provided 'RDKit::DiscreteValueVect::DiscreteValueVect(const RDKit::DiscreteValueVect&)'
50 | DiscreteValueVect(const DiscreteValueVect &other);
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:479:19: warning: implicitly-declared 'RDKit::DiscreteValueVect& RDKit::DiscreteValueVect::operator=(const RDKit::DiscreteValueVect&)' is deprecated [-Wdeprecated-copy]
479 | vect5 = vect2 - vect1;
| ^~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:22:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/DiscreteValueVect.h:50:3: note: because 'RDKit::DiscreteValueVect' has user-provided 'RDKit::DiscreteValueVect::DiscreteValueVect(const RDKit::DiscreteValueVect&)'
50 | DiscreteValueVect(const DiscreteValueVect &other);
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp: In function 'void test6SparseIntVect()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:627:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
627 | iV3 = iV1 & iV2;
| ^~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
38 | SparseIntVect(const SparseIntVect<IndexType> &other) {
| ^~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:725:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
725 | iV3 = iV1 | iV2;
| ^~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
38 | SparseIntVect(const SparseIntVect<IndexType> &other) {
| ^~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:808:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
808 | iV3 = iV1 + iV2;
| ^~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
38 | SparseIntVect(const SparseIntVect<IndexType> &other) {
| ^~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:864:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
864 | iV3 = iV1 - iV2;
| ^~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/testDatastructs.cpp:26:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
38 | SparseIntVect(const SparseIntVect<IndexType> &other) {
| ^~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DataStructs.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/SparseIntVect.cpp
[ 12%] Linking CXX executable testDataStructs
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/SparseIntVect.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 12%] Built target testDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
Scanning dependencies of target testGrid
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make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 12%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/testGrid.cpp
[ 12%] Linking CXX executable testGrid
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 12%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/testTransforms.cpp
[ 13%] Linking CXX executable testTransforms
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 13%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/Point.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/Point.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/UniformGrid3D.cpp
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/UniformGrid3D.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/rdGeometry.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/rdGeometry.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 14%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_FPB.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 15%] Built target rdGeometry
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
Scanning dependencies of target Alignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 15%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/g++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/AlignPoints.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_FPB.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 15%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2019.03.3 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 15%] Built target Alignment
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target testSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/testPickers.cpp
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_Utils.cpp
[ 16%] Linking CXX executable testSimDivPickers
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSimDivPickers.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread ../../lib/libRDKithc.so.1.2019.03.3
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/wrap_Utils.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSimDivPickers.so.1.2019.03.3 ../../../lib/libRDKithc.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Built target rdSimDivPickers
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdInfoTheory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Built target cDataStructs
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
Scanning dependencies of target cQuantize
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 16%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/cQuantize.cpp
[ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/cQuantize.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitInfoTheory.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemicalFeatures
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/g++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/FreeChemicalFeature.cpp
[ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
[ 17%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
Scanning dependencies of target GraphMol
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Atom.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 18%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitInfoTheory.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/g++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/testAlignment.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryBond.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 19%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Bond.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Built target rdAlignment
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/g++ -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/testChemicalFeatures.cpp
[ 19%] Linking CXX executable testChemicalFeatures
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Built target testChemicalFeatures
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolOps.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FindRings.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RWMol.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PeriodicTable.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/atomic_data.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = int; std::istream = std::basic_istream<char>]':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1004:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int) [with T = int; std::istream = std::basic_istream<char>]'
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:819:57: required from here
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1516:37: warning: comparison is always false due to limited range of data type [-Wtype-limits]
1516 | if ((tmpChar < 0 || tmpChar > 127) && version > 9000) {
| ~~~~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = unsigned char; std::istream = std::basic_istream<char>]':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1004:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int) [with T = unsigned char; std::istream = std::basic_istream<char>]'
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:821:63: required from here
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:1516:37: warning: comparison is always false due to limited range of data type [-Wtype-limits]
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.cpp:12:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h: In function 'bool RDKit::isSerializable(const RDKit::Dict::Pair&, const CustomPropHandlerVec&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:353:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
353 | }
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:354:5: note: here
354 | default:
| ^~~~~~~
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Canon.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/AtomIterators.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/BondIterators.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Aromaticity.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Kekulize.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDiscriminators.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ConjugHybrid.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/AddHs.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Matrices.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Chirality.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RingInfo.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Renumber.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/AdjustQuery.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Resonance.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StereoGroup.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/new_canon.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Resonance.cpp: In member function 'void RDKit::ConjElectrons::computeMetrics()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Resonance.cpp:801:33: warning: expression does not compute the number of elements in this array; element type is 'const unsigned int', not 'double' [-Wsizeof-array-div]
801 | const int enSize = sizeof(en) / sizeof(double);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Resonance.cpp:801:35: note: add parentheses around 'sizeof (double)' to silence this warning
801 | const int enSize = sizeof(en) / sizeof(double);
| ^~~~~~~~~~~~~~
| ( )
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Resonance.cpp:792:29: note: array 'en' declared here
792 | static const unsigned int en[] = {
| ^~
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstanceGroup.cpp
[ 23%] Linking CXX shared library ../../lib/libRDKitGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2019.03.3 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Built target GraphMol
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target MolTransforms
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Scanning dependencies of target SubstructMatch
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/g++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/MolTransforms.cpp
[ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 23%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Built target MolTransforms
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/SubstructUtils.cpp
[ 23%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Built target SubstructMatch
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target Subgraphs
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make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/Subgraphs.cpp
[ 23%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmilesWrite.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/SmartsWrite.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/g++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/GasteigerParams.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/Trajectory.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp: In function 'std::string RDKit::SmilesWrite::{anonymous}::get_radical_block(const RDKit::ROMol&, const std::vector<unsigned int>&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp:514:21: warning: loop variable 'pr' creates a copy from type 'const std::pair<const unsigned int, std::vector<unsigned int> >' [-Wrange-loop-construct]
514 | for (const auto pr : rads) {
| ^~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp:514:21: note: use reference type to prevent copying
514 | for (const auto pr : rads) {
| ^~
| &
[ 23%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2019.03.3 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target rdPartialCharges
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[ 23%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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[ 24%] Built target rdPartialCharges
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolTransforms
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
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[ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
[ 24%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
[ 24%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
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[ 24%] Built target ShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target MolCatalog
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[ 24%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/g++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
[ 24%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smarts.tab.hpp:97:7: warning: type 'union YYSTYPE' violates the C++ One Definition Rule [-Wodr]
97 | union YYSTYPE
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smiles.tab.hpp:80:7: note: a different type is defined in another translation unit
80 | union YYSTYPE
| ^
smarts.yy:64:22: note: the first difference of corresponding definitions is field 'atom'
64 | (YYSTYPE * yylval_param , yyscan_t yyscanner, int& start_token)
| ^
smiles.yy:79:17: note: a field of same name but different type is defined in another translation unit
79 | %parse-param {void *scanner}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:27:29: note: type name 'RDKit::QueryAtom' should match type name 'RDKit::Atom'
27 | class RDKIT_GRAPHMOL_EXPORT QueryAtom : public Atom {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Atom.h:69:29: note: the incompatible type is defined here
69 | class RDKIT_GRAPHMOL_EXPORT Atom : public RDProps {
| ^
/scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:417:7: warning: type 'union yyalloc' violates the C++ One Definition Rule [-Wodr]
/scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:414:7: note: a different type is defined in another translation unit
/scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:420:11: note: the first difference of corresponding definitions is field 'yyvs_alloc'
/scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:417:11: note: a field of same name but different type is defined in another translation unit
/scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:417:7: note: type 'union YYSTYPE' itself violates the C++ One Definition Rule
[ 24%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/g++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 25%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2019.03.3 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2019.03.3 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 25%] Built target MolCatalog
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 25%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/SLNParse.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 25%] Built target SmilesParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 25%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdqueries.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdqueries.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Queries.cpp
[ 25%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/SLNAttribs.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Queries.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitQueries.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Queries.cpp:15:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, ExplicitBitVect>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h:949:16: required from here
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h:956:16: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
956 | } catch (KeyErrorException) {
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryOps.h:958:23: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
958 | } catch (boost::bad_any_cast) {
| ^~~~~~~~~~~~
[ 25%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/sln.tab.cpp
[ 26%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 26%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/lex.yysln.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 26%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdtrajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Trajectory.cpp
[ 27%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2019.03.3 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Trajectory.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdTrajectory.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2019.03.3 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 27%] Built target SLNParse
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 27%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdTrajectory.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 27%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 27%] Built target rdtrajectory
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
Scanning dependencies of target Depictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 27%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp:12:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:314:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
314 | return posi->second;
| ^~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) {
| ^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
310 | bool permuteDeg4Nodes, bool forceRDKit) {
| ~~~~~^~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:314:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
314 | return posi->second;
| ^~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) {
| ^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithAng(unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:710:40: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
710 | EmbeddedAtom refAtom = d_eatoms[toAid];
| ^
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) {
| ^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithNoAng(unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:781:40: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
781 | EmbeddedAtom refAtom = d_eatoms[toAid];
| ^
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) {
| ^~~~~~~~
[ 28%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 28%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/g++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 28%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/g++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/LinearSearch.cpp
[ 29%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2019.03.3 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Built target Optimizer
[ 29%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/DepictUtils.cpp
make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/catch_sgroups.cpp
[ 29%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2019.03.3 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Built target Depictor
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/cptest.cpp
[ 29%] Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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[ 29%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
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[ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/querytest.cpp
[ 29%] Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testCanon.cpp
[ 30%] Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 30%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
Scanning dependencies of target test-valgrind
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test-valgrind.cpp
[ 31%] Linking CXX executable graphmolSGroupCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 31%] Linking CXX executable test-valgrind
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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[ 31%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/itertest.cpp
[ 31%] Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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[ 31%] Built target graphmolIterTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/memtest1.cpp
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[ 31%] Built target graphmolSGroupCatch
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
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[ 31%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
[ 31%] Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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[ 31%] Built target graphmolMemTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/smatest.cpp
[ 31%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
[ 31%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 31%] Linking CXX executable smaTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Built target ChemTransforms
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest2
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/test2.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Built target smaTest1
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FilterCatalog
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Filters.cpp
[ 32%] Linking CXX executable smiTest2
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
[ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
Scanning dependencies of target Fingerprints
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[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Fingerprints.cpp
[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
[ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/AtomPairs.cpp
[ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
[ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/MACCS.cpp
[ 33%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
[ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp
[ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/MorganGenerator.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 34%] Built target FilterCatalog
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs2
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 34%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/test2.cpp
[ 35%] Linking CXX executable testSubgraphs2
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target testSubgraphs2
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/test1.cpp
[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/FingerprintUtil.cpp
[ 35%] Linking CXX executable testSubgraphs1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target testSubgraphs1
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
[ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2019.03.3 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
[ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 37%] Built target Fingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target testPartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 37%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/test1.cpp
[ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragCatParams.cpp
[ 37%] Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target MolChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
[ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
[ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
[ 37%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2019.03.3 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2019.03.3 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 37%] Built target FragCatalog
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 37%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
[ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
D.353596 + 32].x'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67: note: '<anonymous>' declared here
97 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(1));
| ^
D.353596 + 32].y'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67: note: '<anonymous>' declared here
97 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(1));
| ^
D.353596 + 32].z'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67: note: '<anonymous>' declared here
97 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(1));
| ^
D.353590 + 32].x'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67: note: '<anonymous>' declared here
95 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(0));
| ^
D.353590 + 32].y'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67: note: '<anonymous>' declared here
95 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(0));
| ^
D.353590 + 32].z'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67: note: '<anonymous>' declared here
95 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(0));
| ^
D.353584 + 32].x'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67: note: '<anonymous>' declared here
92 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(1));
| ^
D.353584 + 32].y'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67: note: '<anonymous>' declared here
92 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(1));
| ^
D.353584 + 32].z'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67: note: '<anonymous>' declared here
92 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(1));
| ^
D.353555 + 32].x'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67: note: '<anonymous>' declared here
90 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(0));
| ^
D.353555 + 32].y'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67: note: '<anonymous>' declared here
90 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(0));
| ^
D.353555 + 32].z'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
In member function 'RDGeom::Point3D::Point3D(RDGeom::Point3D const&)',
inlined from 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67: note: '<anonymous>' declared here
90 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(0));
| ^
[ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
D.15947 + 32].x'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67: note: '<anonymous>' declared here
97 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(1));
| ^
D.15947 + 32].y'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67: note: '<anonymous>' declared here
97 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(1));
| ^
D.15947 + 32].z'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:97:67: note: '<anonymous>' declared here
97 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(1));
| ^
D.15943 + 32].x'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67: note: '<anonymous>' declared here
95 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(0));
| ^
D.15943 + 32].y'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67: note: '<anonymous>' declared here
95 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(0));
| ^
D.15943 + 32].z'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:95:67: note: '<anonymous>' declared here
95 | python::extract<RDGeom::Point3D>(box2.attr("__getitem__")(0));
| ^
D.15939 + 32].x'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67: note: '<anonymous>' declared here
92 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(1));
| ^
D.15939 + 32].y'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67: note: '<anonymous>' declared here
92 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(1));
| ^
D.15939 + 32].z'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:92:67: note: '<anonymous>' declared here
92 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(1));
| ^
D.15935 + 32].x'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:31: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67: note: '<anonymous>' declared here
90 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(0));
| ^
D.15935 + 32].y'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:43: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67: note: '<anonymous>' declared here
90 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(0));
| ^
D.15935 + 32].z'In member function '__ct ',
inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:56:55: warning: may be used uninitialized [-Wmaybe-uninitialized]
56 | : Point(other), x(other.x), y(other.y), z(other.z) {}
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:90:67: note: '<anonymous>' declared here
90 | python::extract<RDGeom::Point3D>(box1.attr("__getitem__")(0));
| ^
[ 38%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 38%] Built target rdShapeHelpers
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target MolChemicalFeatures
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
[ 40%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target ReducedGraphs
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/test.cpp
[ 41%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target SubstructLibrary
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
[ 41%] Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSLNParse.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp:35:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitSLNParse.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdchem.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target testSLNParse
[ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Table.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Table.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdchem.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Table.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Atom.cpp
[ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Bond.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Atom.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Bond.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Mol.cpp
[ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Conformer.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Mol.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/Conformer.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
Scanning dependencies of target RDInchiLib
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 42%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/g++ -DRDInchiLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/inchi.cpp
[ 42%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2019.03.3 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: -linchi ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2019.03.3 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 42%] Built target RDInchiLib
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
Scanning dependencies of target FileParsers
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make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/Mol2FileParser.cpp
[ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/RingInfo.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/RingInfo.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/EditableMol.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/EditableMol.cpp:17:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MonomerInfo.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MonomerInfo.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupParsing.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp:15:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolBundle.cpp
[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolBundle.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp:14:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp: In function 'RDKit::SGroupWriting::BuildV2000SAPLines[abi:cxx11](int, RDKit::SubstanceGroup const&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.h:24:25: warning: '%3d' directive output may be truncated writing between 3 and 11 bytes into a region of size 4 [-Wformat-truncation=]
24 | snprintf(output, 5, " %3d", value);
| ^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.h:24:23: note: directive argument in the range [-2147483647, 2147483647]
24 | snprintf(output, 5, " %3d", value);
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from /usr/include/c++/11/cstdio:42,
from /usr/include/c++/11/ext/string_conversions.h:43,
from /usr/include/c++/11/bits/basic_string.h:6566,
from /usr/include/c++/11/string:55,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/streambuf:41,
from /usr/include/c++/11/bits/streambuf_iterator.h:35,
from /usr/include/c++/11/iterator:66,
from /usr/include/boost/iterator/iterator_traits.hpp:10,
from /usr/include/boost/range/mutable_iterator.hpp:23,
from /usr/include/boost/range/iterator.hpp:20,
from /usr/include/boost/range/begin.hpp:24,
from /usr/include/boost/algorithm/string/detail/sequence.hpp:17,
from /usr/include/boost/algorithm/string/join.hpp:15,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolSGroupWriting.cpp:11:
/usr/include/bits/stdio2.h:71:35: note: '__snprintf_chk' output between 5 and 13 bytes into a destination of size 5
71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
72 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
73 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/StereoGroup.cpp
[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolFileStereochem.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/StereoGroup.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp
[ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SubstanceGroup.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SubstanceGroup.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
[ 44%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SDMolSupplier.cpp
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SDWriter.cpp
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TDTWriter.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 45%] Built target rdchem
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
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[ 45%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/pyInchi.cpp
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/TplFileParser.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/pyInchi.cpp:32:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitRDInchiLib.so.1.2019.03.3 -linchi ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/BondStretch.cpp
[ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/Nonbonded.cpp
[ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/PDBWriter.cpp
[ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/Inversion.cpp
[ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/TorsionAngle.cpp
[ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/PDBSupplier.cpp
[ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/DistanceConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/AngleConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/TorsionConstraint.cpp
[ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SequenceParsers.cpp
[ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/PositionConstraint.cpp
[ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/Params.cpp
[ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SequenceWriters.cpp
[ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/AngleBend.cpp
[ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/SVGParser.cpp
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/BondStretch.cpp
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/StretchBend.cpp
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/OopBend.cpp
[ 50%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2019.03.3 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/TorsionAngle.cpp
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/Nonbonded.cpp
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/DistanceConstraint.cpp
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/AngleConstraint.cpp
[ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/PositionConstraint.cpp
[ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/g++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/Params.cpp
[ 51%] Linking CXX shared library ../../lib/libRDKitForceField.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2019.03.3 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/ForceField.cpp: In member function 'minimize':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/Snapshot.h:36:7: warning: 'finalForce' may be used uninitialized in this function [-Wmaybe-uninitialized]
36 | d_energy(energy),
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/ForceField.cpp:198:10: note: 'finalForce' was declared here
198 | double finalForce;
| ^
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 51%] Built target FileParsers
make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFingerprintGenerator
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 52%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 52%] Built target ForceField
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 53%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/test1.cpp
[ 53%] Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
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[ 53%] Built target testMolTransforms
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
[ 54%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 54%] Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 54%] Built target rdFingerprintGenerator
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 54%] Built target testFeatures
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 55%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/test1.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
[ 55%] Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolCatalog.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 55%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 55%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h:15,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp:5:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
[ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolCatalog.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Built target rdMolCatalog
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7,
from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13,
from /usr/include/boost/property_tree/json_parser.hpp:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp:16:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp: In function 'bool RDKit::checkRingMatch(const RDKit::MCSBondCompareParameters&, const RDKit::ROMol&, unsigned int, const RDKit::ROMol&, unsigned int, void*)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp:273:60: warning: unused parameter 'p' [-Wunused-parameter]
273 | static bool checkRingMatch(const MCSBondCompareParameters& p, const ROMol& mol1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/FMCS.cpp:273:76: warning: unused parameter 'mol1' [-Wunused-parameter]
273 | static bool checkRingMatch(const MCSBondCompareParameters& p, const ROMol& mol1,
| ~~~~~~~~~~~~~^~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Built target rdMolChemicalFeatures
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/g++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/MMPA.cpp
[ 56%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Seed.cpp
[ 57%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2019.03.3 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2019.03.3 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 57%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/test1.cpp
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
[ 58%] Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target rdReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 58%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitReducedGraphs.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Built target rdReducedGraphs
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
[ 58%] Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 58%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2019.03.3 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target FMCS
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolfiles.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp:32:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 59%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolfiles.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp:31:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 59%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target rdSubstructLibrary
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target Descriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Crippen.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 60%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MolDescriptors.cpp
[ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 60%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MolSurf.cpp
[ 61%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp
[ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Lipinski.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
[ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MQN.cpp
[ 61%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesWriter.cpp
[ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Property.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SmilesWriter.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
[ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDWriter.cpp
[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/SDWriter.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/USRDescriptor.cpp
[ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTWriter.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/TDTWriter.cpp:13:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 62%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2019.03.3 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/PDBWriter.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/PDBWriter.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 62%] Built target Descriptors
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 62%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
[ 63%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 63%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
[ 64%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 64%] Built target rdmolfiles
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTestsCatch
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[ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/catch_tests.cpp
[ 64%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
[ 64%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
[ 64%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
[ 64%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 64%] Built target ForceFieldHelpers
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
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make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 64%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testMolBundle.cpp
[ 65%] Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/testSGroup.dir/DependInfo.cmake --color=
Scanning dependencies of target testSGroup
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSGroup.dir/testSGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testSGroup.cpp
[ 66%] Linking CXX executable graphmolTestsCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -o graphmolTestsCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 66%] Linking CXX executable testSGroup
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSGroup.dir/testSGroup.cpp.o -o testSGroup -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testPicklerGlobalSettings.cpp
[ 66%] Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testChirality.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target graphmolTestsCatch
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:12:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp: In function 'void testAtomListLineRoundTrip()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:1218:72: warning: 'this' pointer null [-Wnonnull]
1218 | TEST_ASSERT(dynamic_cast<QueryAtom *>(m->getAtomWithIdx(3))->Match(cl));
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT'
152 | if (!(expr)) { \
| ^~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitQueries.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:14:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:73:8: note: in a call to non-static member function 'virtual bool RDKit::QueryAtom::Match(const RDKit::Atom*) const'
73 | bool Match(Atom const *what) const;
| ^~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:12:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:1219:71: warning: 'this' pointer null [-Wnonnull]
1219 | TEST_ASSERT(dynamic_cast<QueryAtom *>(m->getAtomWithIdx(3))->Match(o));
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT'
152 | if (!(expr)) { \
| ^~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitQueries.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:14:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:73:8: note: in a call to non-static member function 'virtual bool RDKit::QueryAtom::Match(const RDKit::Atom*) const'
73 | bool Match(Atom const *what) const;
| ^~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:12:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:1220:73: warning: 'this' pointer null [-Wnonnull]
1220 | TEST_ASSERT(dynamic_cast<QueryAtom *>(m2->getAtomWithIdx(3))->Match(cl));
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT'
152 | if (!(expr)) { \
| ^~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitQueries.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:14:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:73:8: note: in a call to non-static member function 'virtual bool RDKit::QueryAtom::Match(const RDKit::Atom*) const'
73 | bool Match(Atom const *what) const;
| ^~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:12:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:1221:72: warning: 'this' pointer null [-Wnonnull]
1221 | TEST_ASSERT(dynamic_cast<QueryAtom *>(m2->getAtomWithIdx(3))->Match(o));
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT'
152 | if (!(expr)) { \
| ^~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitQueries.h:21,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/test1.cpp:14:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/QueryAtom.h:73:8: note: in a call to non-static member function 'virtual bool RDKit::QueryAtom::Match(const RDKit::Atom*) const'
73 | bool Match(Atom const *what) const;
| ^~~~~
[ 66%] Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 66%] Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/resMolSupplierTest.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMolOpsTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/molopstest.cpp
[ 67%] Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/hanoitest.cpp
[ 68%] Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target hanoiTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/testPickler.cpp
[ 68%] Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 68%] Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
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[ 68%] Built target graphmoltestPickler
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/g++ -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/testDepictor.cpp
[ 68%] Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:18:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:314:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
314 | return posi->second;
| ^~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:59:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
59 | EmbeddedAtom &operator=(const EmbeddedAtom &other) {
| ^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter]
131 | void setPreferCoordGen(bool value) {
| ~~~~~^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target graphmolMolOpsTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
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[ 68%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/test.cpp
[ 68%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp: In function 'void ____C_A_T_C_H____T_E_S_T____13()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp:139:21: warning: loop variable 'sma' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
139 | for (const auto sma : smarts) {
| ^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp:139:21: note: use reference type to prevent copying
139 | for (const auto sma : smarts) {
| ^~~
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp:150:21: warning: loop variable 'sma' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
150 | for (const auto sma : smarts) {
| ^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/catch_tests.cpp:150:21: note: use reference type to prevent copying
150 | for (const auto sma : smarts) {
| ^~~
| &
[ 68%] Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
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[ 68%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
[ 68%] Linking CXX executable smiTestCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 68%] Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target cxsmilesTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testMolWriter.cpp
[ 68%] Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target smiTestCatch
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/test1.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 68%] Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitRDStreams.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color=
Scanning dependencies of target testExtendedStereoParsing
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp
[ 68%] Linking CXX executable testExtendedStereoParsing
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testExtendedStereoParsing
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp
[ 68%] Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp: In function 'void test1()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:43:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy]
43 | conf = m->getConformer(0);
| ^
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:25,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:13:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:60:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)'
60 | Conformer(const Conformer &other);
| ^~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:48:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy]
48 | conf = m->getConformer(1);
| ^
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:25,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:13:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:60:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)'
60 | Conformer(const Conformer &other);
| ^~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:59:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy]
59 | conf = m->getConformer(0);
| ^
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RDKitBase.h:25,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testTpls.cpp:13:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:60:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)'
60 | Conformer(const Conformer &other);
| ^~~~~~~~~
[ 68%] Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testMol2ToMol.cpp
[ 68%] Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testSequence.cpp
[ 68%] Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersCatchTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/catch_tests.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/DependInfo.cmake --color=
Scanning dependencies of target testPropertyLists
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/testPropertyLists.cpp
[ 69%] Linking CXX executable fileParsersCatchTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 69%] Linking CXX executable testPropertyLists
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPropertyLists.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -o testPropertyLists -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Built target fileParsersCatchTest
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/test1.cpp
[ 69%] Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Built target testPropertyLists
make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/DependInfo.cmake --color=
Scanning dependencies of target substructTestCatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/catch_tests.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Built target testSubstructMatch
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Reaction.cpp
[ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/MDLParser.cpp
[ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/DaylightParser.cpp
[ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolPickler.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp:13:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h: In function 'bool RDKit::isSerializable(const RDKit::Dict::Pair&, const CustomPropHandlerVec&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:353:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
353 | }
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/StreamOps.h:354:5: note: here
354 | default:
| ^~~~~~~
[ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionWriter.cpp
[ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionDepict.cpp
[ 71%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp: In function 'RDKit::SparseIntVect<unsigned int>* RDKit::DifferenceFingerprintChemReaction(const RDKit::ChemicalReaction&, const RDKit::ReactionFingerprintParams&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:221:42: warning: implicitly-declared 'RDKit::SparseIntVect<unsigned int>& RDKit::SparseIntVect<unsigned int>::operator=(const RDKit::SparseIntVect<unsigned int>&)' is deprecated [-Wdeprecated-copy]
221 | (*res) = *productFP - *reactantFP + *agentFP;
| ^~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Fingerprints.h:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect<unsigned int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = unsigned int]'
38 | SparseIntVect(const SparseIntVect<IndexType> &other) {
| ^~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:226:28: warning: implicitly-declared 'RDKit::SparseIntVect<unsigned int>& RDKit::SparseIntVect<unsigned int>::operator=(const RDKit::SparseIntVect<unsigned int>&)' is deprecated [-Wdeprecated-copy]
226 | (*res) = *productFP - *reactantFP;
| ^~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Fingerprints.h:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/SparseIntVect.h:38:3: note: because 'RDKit::SparseIntVect<unsigned int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = unsigned int]'
38 | SparseIntVect(const SparseIntVect<IndexType> &other) {
| ^~~~~~~~~~~~~
[ 71%] Linking CXX executable substructTestCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructTestCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -o substructTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 71%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionUtils.cpp
[ 71%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/MoleculeParser.cpp
[ 71%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/ReactionRunner.cpp
[ 71%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 71%] Built target substructTestCatch
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 72%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
[ 72%] Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Built target testChemTransforms
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
[ 73%] Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp:32:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
[ 73%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2019.03.3 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp:31:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Built target ChemReactions
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 74%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/test1.cpp
[ 74%] Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFragCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 74%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 74%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h:15,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
[ 75%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 75%] Built target rdfiltercatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
[ 75%] Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 75%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target testDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/g++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/test.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFragCatalog.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 76%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 76%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
[ 76%] Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 76%] Built target testDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/DependInfo.cmake --color=
Scanning dependencies of target fpTestCatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/catch_tests.cpp
D.382551 + 32].x'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
In member function 'RDGeom::Point3D::operator=(RDGeom::Point3D const&)',
inlined from '(anonymous namespace)::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:85:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
85 | x = other.x;
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function '(anonymous namespace)::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53: note: '<anonymous>' declared here
539 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.382551 + 32].y'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
In member function 'RDGeom::Point3D::operator=(RDGeom::Point3D const&)',
inlined from '(anonymous namespace)::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:86:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
86 | y = other.y;
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function '(anonymous namespace)::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53: note: '<anonymous>' declared here
539 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.382551 + 32].z'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
In member function 'RDGeom::Point3D::operator=(RDGeom::Point3D const&)',
inlined from '(anonymous namespace)::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:87:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
87 | z = other.z;
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function '(anonymous namespace)::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53: note: '<anonymous>' declared here
539 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.381084 + 32].x'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
In member function 'RDGeom::Point3D::operator=(RDGeom::Point3D const&)',
inlined from '(anonymous namespace)::GetUSRDistributions(boost::python::api::object, boost::python::api::object)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:85:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
85 | x = other.x;
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function '(anonymous namespace)::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53: note: '<anonymous>' declared here
506 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.381084 + 32].y'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
In member function 'RDGeom::Point3D::operator=(RDGeom::Point3D const&)',
inlined from '(anonymous namespace)::GetUSRDistributions(boost::python::api::object, boost::python::api::object)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:86:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
86 | y = other.y;
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function '(anonymous namespace)::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53: note: '<anonymous>' declared here
506 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.381084 + 32].z'In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Conformer.h:14,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ROMol.h:36,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/GraphMol.h:19,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
In member function 'RDGeom::Point3D::operator=(RDGeom::Point3D const&)',
inlined from '(anonymous namespace)::GetUSRDistributions(boost::python::api::object, boost::python::api::object)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:87:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
87 | z = other.z;
| ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function '(anonymous namespace)::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53: note: '<anonymous>' declared here
506 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
[ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
D.18352 + 32].x'In member function 'operator=',
inlined from 'GetUSRDistributions' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:85:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
85 | x = other.x;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'GetUSRDistributions':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53: note: '<anonymous>' declared here
506 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.18352 + 32].y'In member function 'operator=',
inlined from 'GetUSRDistributions' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:86:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
86 | y = other.y;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'GetUSRDistributions':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53: note: '<anonymous>' declared here
506 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.18352 + 32].z'In member function 'operator=',
inlined from 'GetUSRDistributions' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:87:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
87 | z = other.z;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'GetUSRDistributions':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:506:53: note: '<anonymous>' declared here
506 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.20585 + 32].x'In member function 'operator=',
inlined from 'GetUSRDistributionsFromPoints' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:85:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
85 | x = other.x;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'GetUSRDistributionsFromPoints':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53: note: '<anonymous>' declared here
539 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.20585 + 32].y'In member function 'operator=',
inlined from 'GetUSRDistributionsFromPoints' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:86:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
86 | y = other.y;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'GetUSRDistributionsFromPoints':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53: note: '<anonymous>' declared here
539 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
D.20585 + 32].z'In member function 'operator=',
inlined from 'GetUSRDistributionsFromPoints' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/point.h:87:15: warning: may be used uninitialized [-Wmaybe-uninitialized]
87 | z = other.z;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function 'GetUSRDistributionsFromPoints':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:539:53: note: '<anonymous>' declared here
539 | *pt = python::extract<RDGeom::Point3D>(coords[i]);
| ^
[ 77%] Linking CXX executable fpTestCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprintGenerators
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp
[ 77%] Linking CXX executable testFingerprintGenerators
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target fpTestCatch
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/test1.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target testFingerprintGenerators
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target rdForceFieldHelpers
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
[ 77%] Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Built target testFingerprints
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/testFMCS_Unit.cpp
[ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
[ 78%] Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7,
from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13,
from /usr/include/boost/property_tree/json_parser.hpp:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp:22:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 78%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
[ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 78%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization -lcairo
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test/testFMCS.cpp
[ 78%] Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Built target MolDraw2D
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/g++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/MolHash.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Built target FMCStest
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
[ 79%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/g++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/HashToString.cpp
[ 79%] Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMMPA.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 79%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 79%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 79%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2019.03.3 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 79%] Built target MolHash
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 79%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructChecker.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMMPA.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 80%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 80%] Built target rdMMPA
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 80%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/trajectoryTest.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7,
from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13,
from /usr/include/boost/property_tree/json_parser.hpp:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:16:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 81%] Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 81%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StructureFlags.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp: In member function 'void RDKit::RGroupDecompData::relabelCore(RDKit::RWMol&, std::map<int, int>&, const std::set<int>&, const std::set<int>&, std::map<int, std::vector<int> >)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:675:41: warning: unused parameter 'userLabels' [-Wunused-parameter]
675 | const std::set<int> &userLabels,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Utilites.cpp
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Pattern.cpp
[ 81%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Stereo.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 81%] Built target RGroupDecomposition
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 81%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolops.cpp
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/rdmolops.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 81%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolOps.cpp
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/MolOps.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/ReCharge.cpp
[ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Tautomer.cpp
[ 82%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2019.03.3 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2019.03.3 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 82%] Built target StructChecker
make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color=
Scanning dependencies of target MolStandardize
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/MolStandardize.cpp
[ 82%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization
[ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Metal.cpp
[ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Normalize.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 82%] Built target rdmolops
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 82%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/g++ -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp
[ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Validate.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/property_tree/json_parser/detail/parser.hpp:7,
from /usr/include/boost/property_tree/json_parser/detail/read.hpp:13,
from /usr/include/boost/property_tree/json_parser.hpp:16,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:60:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1007:71: warning: unused parameter 'sza' [-Wunused-parameter]
1007 | extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
| ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1008:71: warning: unused parameter 'szb' [-Wunused-parameter]
1008 | const char *b, unsigned int szb) {
| ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1120:71: warning: unused parameter 'sza' [-Wunused-parameter]
1120 | extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
| ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1158:71: warning: unused parameter 'sza' [-Wunused-parameter]
1158 | extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
| ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1459:38: warning: unused parameter 'data' [-Wunused-parameter]
1459 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
| ~~~~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1459:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
1459 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
| ~~~~~^~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1460:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
1460 | unsigned int bitFlags) {
| ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1899:21: warning: unused variable 'fp' [-Wunused-variable]
1899 | FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
| ^~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1921:21: warning: unused variable 'fp' [-Wunused-variable]
1921 | FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
| ^~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/adapter.cpp:1966:12: warning: unused variable 'nmols' [-Wunused-variable]
1966 | int len, nmols = 0;
| ^~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Validate.cpp: In member function 'virtual std::vector<RDKit::MolStandardize::ValidationErrorInfo> RDKit::MolStandardize::MolVSValidation::validate(const RDKit::ROMol&, bool) const':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Validate.cpp:207:19: warning: loop variable 'method' creates a copy from type 'const boost::shared_ptr<RDKit::MolStandardize::MolVSValidations>' [-Wrange-loop-construct]
207 | for (const auto method : this->d_validations) {
| ^~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Validate.cpp:207:19: note: use reference type to prevent copying
207 | for (const auto method : this->d_validations) {
| ^~~~~~
| &
[ 82%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Charge.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Charge.cpp: In member function 'RDKit::ROMol* RDKit::MolStandardize::Uncharger::uncharge(const RDKit::ROMol&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Charge.cpp:314:23: warning: loop variable 'pr' creates a copy from type 'const std::pair<int, int>' [-Wrange-loop-construct]
314 | for (const auto pr : a_atoms) nonAcids.reset(pr.second);
| ^~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Charge.cpp:314:23: note: use reference type to prevent copying
314 | for (const auto pr : a_atoms) nonAcids.reset(pr.second);
| ^~
| &
[ 82%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_op.c
[ 82%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/cache.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c: In function 'createCache':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
312 | methodsOrig = ctx->methods;
| ^
[ 82%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/guc.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/guc.c
[ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/low_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
410 | fcinfo->flinfo->fn_extra = searchSfpCache(
| ^~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion]
410 | fcinfo->flinfo->fn_extra = searchSfpCache(
| ^
[ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/mol_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:34:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
/usr/include/pgsql/server/fmgr.h:268:34: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:393:18: note: in expansion of macro 'PG_GETARG_DATUM'
393 | CROMol mol = PG_GETARG_DATUM(1);
| ^~~~~~~~~~~~~~~
/usr/include/pgsql/server/fmgr.h:268:34: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:421:18: note: in expansion of macro 'PG_GETARG_DATUM'
421 | CROMol mol = PG_GETARG_DATUM(1);
| ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/usr/include/pgsql/server/fmgr.h:268:34: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:489:18: note: in expansion of macro 'PG_GETARG_DATUM'
489 | CROMol mol = PG_GETARG_DATUM(1);
| ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:33:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:496:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
496 | PG_RETURN_INT32((int32)lst);
| ^
/usr/include/pgsql/server/postgres.h:479:36: note: in definition of macro 'Int32GetDatum'
479 | #define Int32GetDatum(X) ((Datum) (X))
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:496:5: note: in expansion of macro 'PG_RETURN_INT32'
496 | PG_RETURN_INT32((int32)lst);
| ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:34:
/usr/include/pgsql/server/fmgr.h:268:34: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
268 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:500:18: note: in expansion of macro 'PG_GETARG_DATUM'
500 | CROMol mol = PG_GETARG_DATUM(1);
| ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:373:1: warning: control reaches end of non-void function [-Wreturn-type]
373 | }
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/mol_op.c:508:1: warning: control reaches end of non-void function [-Wreturn-type]
508 | }
| ^
[ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration]
275 | return (int) floor(10000*soergeldistsign(a, b));
| ^~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:42:1: note: include '<math.h>' or provide a declaration of 'floor'
41 | #include "bitstring.h"
+++ |+#include <math.h>
42 |
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor' [-Wbuiltin-declaration-mismatch]
275 | return (int) floor(10000*soergeldistsign(a, b));
| ^~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '<math.h>' or provide a declaration of 'floor'
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
262 | double d;
| ^
[ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_gist.c
[ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_gin.c
[ 83%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/bitstring.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
72 | int i;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
106 | int i;
| ^
[ 84%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_io.c
[ 84%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rxn_op.c
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
164 | // /* keep compiler quiet - no extra ; */ \
| ^
[ 84%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/gcc -DRDKITVER=\"007400\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/sfp_op.c
[ 84%] Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o -L/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2019.03.3 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c:410:30: warning: type of 'searchSfpCache' does not match original declaration [-Wlto-type-mismatch]
410 | fcinfo->flinfo->fn_extra = searchSfpCache(
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c:620:1: note: return value type mismatch
620 | searchSfpCache(void *cache, struct MemoryContextData * ctx, Datum a,
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c:620:1: note: 'searchSfpCache' was previously declared here
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/cache.c:620:1: note: code may be misoptimized unless '-fno-strict-aliasing' is used
[ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Tautomer.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Tautomer.cpp: In member function 'RDKit::ROMol* RDKit::MolStandardize::TautomerCanonicalizer::canonicalize(const RDKit::ROMol&, RDKit::MolStandardize::TautomerCatalog*)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Tautomer.cpp:37:19: warning: loop variable 't' creates a copy from type 'const boost::shared_ptr<RDKit::ROMol>' [-Wrange-loop-construct]
37 | for (const auto t : tautomers) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Tautomer.cpp:37:19: note: use reference type to prevent copying
37 | for (const auto t : tautomers) {
| ^
| &
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Built target rdkit
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_INCHI_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/test.cpp
[ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp: In member function 'RDKit::ROMol* RDKit::MolStandardize::FragmentRemover::remove(const RDKit::ROMol&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp:79:19: warning: loop variable 'frag' creates a copy from type 'const boost::shared_ptr<RDKit::ROMol>' [-Wrange-loop-construct]
79 | for (const auto frag :
| ^~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp:79:19: note: use reference type to prevent copying
79 | for (const auto frag :
| ^~~~
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp:121:19: warning: loop variable 'frag' creates a copy from type 'const std::pair<boost::shared_ptr<RDKit::ROMol>, unsigned int>' [-Wrange-loop-construct]
121 | for (const auto frag : frags) {
| ^~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Fragment.cpp:121:19: note: use reference type to prevent copying
121 | for (const auto frag : frags) {
| ^~~~
| &
[ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp
[ 85%] Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2019.03.3 -linchi ../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Built target testInchi
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/testUFFForceField.cpp
[ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp
[ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp
[ 85%] Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Built target testUFFForceField
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeometry
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/DistGeomUtils.cpp
[ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp
[ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp
[ 86%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/TriangleSmooth.cpp
[ 86%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/DistViolationContrib.cpp
[ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp
[ 87%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/ChiralViolationContrib.cpp
[ 87%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2019.03.3 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 87%] Built target DistGeometry
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target MolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 87%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/g++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/AlignMolecules.cpp
[ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp
[ 87%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/g++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
[ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp
In member function 'boost::dynamic_bitset<unsigned long, std::allocator<unsigned long> >::set(unsigned long, bool)',
inlined from 'RDKit::MolAlign::O3A::O3A(int (*)(unsigned int, unsigned int, double, void*), double (*)(unsigned int, unsigned int, void*), double (*)(unsigned int, unsigned int, void*), void*, RDKit::ROMol&, RDKit::ROMol const&, int, int, boost::dynamic_bitset<unsigned long, std::allocator<unsigned long> >*, boost::dynamic_bitset<unsigned long, std::allocator<unsigned long> >*, bool, unsigned int, unsigned int, RDKit::MolAlign::O3AConstraintVect*, RDKit::ROMol*, RDKit::MolAlign::LAP*, RDKit::MolAlign::MolHistogram*, RDKit::MolAlign::MolHistogram*)' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:1257:27:
cc1plus: warning: 'this' pointer null [-Wnonnull]
In file included from /usr/include/boost/dynamic_bitset.hpp:15,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.h:27,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:10:
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp: In member function 'RDKit::MolAlign::O3A::O3A(int (*)(unsigned int, unsigned int, double, void*), double (*)(unsigned int, unsigned int, void*), double (*)(unsigned int, unsigned int, void*), void*, RDKit::ROMol&, RDKit::ROMol const&, int, int, boost::dynamic_bitset<unsigned long, std::allocator<unsigned long> >*, boost::dynamic_bitset<unsigned long, std::allocator<unsigned long> >*, bool, unsigned int, unsigned int, RDKit::MolAlign::O3AConstraintVect*, RDKit::ROMol*, RDKit::MolAlign::LAP*, RDKit::MolAlign::MolHistogram*, RDKit::MolAlign::MolHistogram*)':
/usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:1032:1: note: in a call to non-static member function 'boost::dynamic_bitset<unsigned long, std::allocator<unsigned long> >::set(unsigned long, bool) [clone .part.0]'
1032 | dynamic_bitset<Block, Allocator>::set(size_type pos, bool val)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2019.03.3 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 87%] Built target MolAlign
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 87%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/ForceField.cpp
[ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/ForceField.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp
[ 88%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization
[ 88%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/g++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/testDistGeom.cpp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target MolStandardize
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap && /usr/bin/g++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/DistGeom.cpp
[ 88%] Linking CXX executable testDistGeom
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../lib/libRDKitForceField.so.1.2019.03.3 ../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/DistGeom.cpp:12:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target testDistGeom
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
Scanning dependencies of target testReaction
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/testReaction.cpp
[ 89%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 89%] Built target DistGeom
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
[ 89%] Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 89%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target testEnumeration
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
[ 90%] Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 90%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color=
Scanning dependencies of target rxnTestCatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/g++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/catch_tests.cpp
[ 91%] Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 92%] Linking CXX executable rxnTestCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 92%] Built target testReaction
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 92%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp:31:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 92%] Built target rxnTestCatch
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 92%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:14:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target rdMolAlign
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/props.hpp:34,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:33:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 93%] Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitShapeHelpers.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target testShapeHelpers
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DRxnTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/rxn_test1.cpp
[ 93%] Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lcairo
In function 'copy',
inlined from '_S_copy' at /usr/include/c++/11/bits/basic_string.h:351:21,
inlined from '_S_copy' at /usr/include/c++/11/bits/basic_string.h:346:7,
inlined from '_M_replace' at /usr/include/c++/11/bits/basic_string.tcc:481:20,
inlined from 'replace' at /usr/include/c++/11/bits/basic_string.h:1946:19,
inlined from 'insert' at /usr/include/c++/11/bits/basic_string.h:1714:22,
inlined from 'operator+' at /usr/include/c++/11/bits/basic_string.h:6154:23,
inlined from 'test2' at /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/rxn_test1.cpp:196:67:
/usr/include/c++/11/bits/char_traits.h:402:56: warning: '__builtin_memcpy' reading 12 bytes from a region of size 1 [-Wstringop-overread]
402 | return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n));
| ^
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTestCatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/catch_tests.cpp
[ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target rdChemReactions
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/test1.cpp
[ 94%] Linking CXX executable moldraw2DTestCatch
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lcairo
[ 94%] Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lcairo
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp:11:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Built target moldraw2DTestCatch
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/testMolHash.cpp
[ 94%] Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
[ 94%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2019.03.3 ../../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolHash.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target rdMolHash
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/testStructChecker.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target rdMolDraw2D
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp:32:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 95%] Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitStructChecker.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target testStructChecker
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
[ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitStructChecker.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target rdStructChecker
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp: In function 'void testSDFGRoupMultiCoreNoneShouldMatch()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:838:13: warning: unused variable 'addedIndex' [-Wunused-variable]
838 | int addedIndex = decomp.add(*mol);
| ^~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp: In function 'void testRowColumnAlignmentProblem()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:897:21: warning: loop variable 'row' creates a copy from type 'const std::map<std::__cxx11::basic_string<char>, boost::shared_ptr<RDKit::ROMol> >' [-Wrange-loop-construct]
897 | for (const auto row : rows) {
| ^~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:897:21: note: use reference type to prevent copying
897 | for (const auto row : rows) {
| ^~~
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:910:21: warning: loop variable 'rg' creates a copy from type 'const boost::shared_ptr<RDKit::ROMol>' [-Wrange-loop-construct]
910 | for (const auto rg : R1) {
| ^~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:910:21: note: use reference type to prevent copying
910 | for (const auto rg : R1) {
| ^~
| &
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:32:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 95%] Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 ../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target testRGroupDecomp
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molStandardizeTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/test1.cpp
[ 96%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2019.03.3 ../../../../lib/libRDKitFMCS.so.1.2019.03.3 ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[ 96%] Linking CXX executable molStandardizeTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Built target rdRGroupDecomposition
make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molNormalizeTest
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[ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testNormalize.cpp
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[ 96%] Built target molStandardizeTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molValidateTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testValidate.cpp
[ 96%] Linking CXX executable molNormalizeTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Built target molNormalizeTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molChargeTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testCharge.cpp
[ 96%] Linking CXX executable molValidateTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Built target molValidateTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molFragmentTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testFragment.cpp
[ 96%] Linking CXX executable molChargeTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Built target molChargeTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molTautomerTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp
[ 97%] Linking CXX executable molFragmentTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 97%] Built target molFragmentTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molStandardizeCatchTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/catch_tests.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp: In function 'void testEnumerator()':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp:745:19: warning: loop variable 'r' creates a copy from type 'const boost::shared_ptr<RDKit::ROMol>' [-Wrange-loop-construct]
745 | for (const auto r : res66) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp:745:19: note: use reference type to prevent copying
745 | for (const auto r : res66) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp:768:19: warning: loop variable 'r' creates a copy from type 'const boost::shared_ptr<RDKit::ROMol>' [-Wrange-loop-construct]
768 | for (const auto r : res67) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/testTautomer.cpp:768:19: note: use reference type to prevent copying
768 | for (const auto r : res67) {
| ^
| &
[ 98%] Linking CXX executable molTautomerTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Built target molTautomerTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molStandardizeSmallTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/test2.cpp
[ 98%] Linking CXX executable molStandardizeSmallTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Built target molStandardizeSmallTest
make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolStandardize
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 98%] Linking CXX executable molStandardizeCatchTest
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeCatchTest.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -o molStandardizeCatchTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization
[ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Validate.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Validate.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Charge.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Charge.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Built target molStandardizeCatchTest
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
[ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 98%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp
[ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::generateInitialCoords(RDGeom::PointPtrVect*, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&, RDNumeric::DoubleSymmMatrix&, RDKit::double_source_type*)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:310:23: warning: loop variable 'v' creates a copy from type 'const std::pair<const int, RDGeom::Point3D>' [-Wrange-loop-construct]
310 | for (const auto v : *embedParams.coordMap) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:310:23: note: use reference type to prevent copying
310 | for (const auto v : *embedParams.coordMap) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::firstMinimization(RDGeom::PointPtrVect*, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:331:21: warning: loop variable 'v' creates a copy from type 'const std::pair<const int, RDGeom::Point3D>' [-Wrange-loop-construct]
331 | for (const auto v : *embedParams.coordMap) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:331:21: note: use reference type to prevent copying
331 | for (const auto v : *embedParams.coordMap) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:339:21: warning: loop variable 'v' creates a copy from type 'const std::pair<const int, RDGeom::Point3D>' [-Wrange-loop-construct]
339 | for (const auto v : *embedParams.coordMap) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:339:21: note: use reference type to prevent copying
339 | for (const auto v : *embedParams.coordMap) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::checkTetrahedralCenters(const PointPtrVect*, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:384:19: warning: loop variable 'tetSet' creates a copy from type 'const boost::shared_ptr<DistGeom::ChiralSet>' [-Wrange-loop-construct]
384 | for (const auto tetSet : *eargs.tetrahedralCarbons) {
| ^~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:384:19: note: use reference type to prevent copying
384 | for (const auto tetSet : *eargs.tetrahedralCarbons) {
| ^~~~~~
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::checkChiralCenters(const PointPtrVect*, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:408:19: warning: loop variable 'chiralSet' creates a copy from type 'const boost::shared_ptr<DistGeom::ChiralSet>' [-Wrange-loop-construct]
408 | for (const auto chiralSet : *eargs.chiralCenters) {
| ^~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:408:19: note: use reference type to prevent copying
408 | for (const auto chiralSet : *eargs.chiralCenters) {
| ^~~~~~~~~
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::minimizeFourthDimension(RDGeom::PointPtrVect*, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:437:21: warning: loop variable 'v' creates a copy from type 'const std::pair<const int, RDGeom::Point3D>' [-Wrange-loop-construct]
437 | for (const auto v : *embedParams.coordMap) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:437:21: note: use reference type to prevent copying
437 | for (const auto v : *embedParams.coordMap) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::minimizeWithExpTorsions(RDGeom::PointPtrVect&, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:480:21: warning: loop variable 'v' creates a copy from type 'const std::pair<const int, RDGeom::Point3D>' [-Wrange-loop-construct]
480 | for (const auto v : *embedParams.coordMap) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:480:21: note: use reference type to prevent copying
480 | for (const auto v : *embedParams.coordMap) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:503:23: warning: loop variable 'v' creates a copy from type 'const std::pair<const int, RDGeom::Point3D>' [-Wrange-loop-construct]
503 | for (const auto v : *embedParams.coordMap) {
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:503:23: note: use reference type to prevent copying
503 | for (const auto v : *embedParams.coordMap) {
| ^
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::EmbeddingOps::finalChiralChecks(RDGeom::PointPtrVect*, const RDKit::DGeomHelpers::detail::EmbedArgs&, const RDKit::DGeomHelpers::EmbedParameters&)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:539:19: warning: loop variable 'chiralSet' creates a copy from type 'const boost::shared_ptr<DistGeom::ChiralSet>' [-Wrange-loop-construct]
539 | for (const auto chiralSet : *eargs.chiralCenters) {
| ^~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:539:19: note: use reference type to prevent copying
539 | for (const auto chiralSet : *eargs.chiralCenters) {
| ^~~~~~~~~
| &
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:560:19: warning: loop variable 'chiralSet' creates a copy from type 'const boost::shared_ptr<DistGeom::ChiralSet>' [-Wrange-loop-construct]
560 | for (const auto chiralSet : *eargs.chiralCenters) {
| ^~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:560:19: note: use reference type to prevent copying
560 | for (const auto chiralSet : *eargs.chiralCenters) {
| ^~~~~~~~~
| &
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'RDKit::DGeomHelpers::EmbeddingOps::embedPoints(std::vector<RDGeom::Point*, std::allocator<RDGeom::Point*> >*, RDKit::DGeomHelpers::detail::EmbedArgs, RDKit::DGeomHelpers::EmbedParameters, int)':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:653:12: warning: 'distrib' may be used uninitialized in this function [-Wmaybe-uninitialized]
653 | delete distrib;
| ^~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:652:12: warning: 'generator' may be used uninitialized in this function [-Wmaybe-uninitialized]
652 | delete generator;
| ^~~~~~~~~
[ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Metal.cpp
[ 99%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap.h:20,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/Metal.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'embedPoints':
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:653:12: warning: 'distrib' may be used uninitialized in this function [-Wmaybe-uninitialized]
653 | delete distrib;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:591:26: note: 'distrib' was declared here
591 | RDKit::uniform_double *distrib;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:652:12: warning: 'generator' may be used uninitialized in this function [-Wmaybe-uninitialized]
652 | delete generator;
| ^
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp:590:20: note: 'generator' was declared here
590 | RDKit::rng_type *generator;
| ^
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 99%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 99%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/testMMFFForceField.cpp
[ 99%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitMolStandardize.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitChemReactions.so.1.2019.03.3 ../../../../lib/libRDKitFilterCatalog.so.1.2019.03.3 ../../../../lib/libRDKitCatalogs.so.1.2019.03.3 ../../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitFingerprints.so.1.2019.03.3 ../../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitChemTransforms.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_serialization
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 99%] Built target rdMolStandardize
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 99%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
[100%] Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
[100%] Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target testMMFFForceField
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
[100%] Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
[100%] Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
In file included from /usr/include/boost/bind.hpp:30,
from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/python.h:3,
from /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[100%] Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread -lboost_system -lboost_iostreams -lboost_regex
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../../lib/libRDKitRDBoost.so.1.2019.03.3 -lpython3.9 -lboost_python39 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/g++ -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.9 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/boost-numeric-bindings -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -std=gnu++11 -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/testMolAlign.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target testDistGeomHelpers
[100%] Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/lib ../../../lib/libRDKitMolAlign.so.1.2019.03.3 ../../../lib/libRDKitDescriptors.so.1.2019.03.3 ../../../lib/libRDKitFileParsers.so.1.2019.03.3 ../../../lib/libRDKitDistGeomHelpers.so.1.2019.03.3 ../../../lib/libRDKitDistGeometry.so.1.2019.03.3 ../../../lib/libRDKitDepictor.so.1.2019.03.3 -lboost_system -lboost_iostreams -lboost_regex ../../../lib/libRDKitMolTransforms.so.1.2019.03.3 ../../../lib/libRDKitPartialCharges.so.1.2019.03.3 ../../../lib/libRDKitSubgraphs.so.1.2019.03.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2019.03.3 ../../../lib/libRDKitSmilesParse.so.1.2019.03.3 ../../../lib/libRDKitSubstructMatch.so.1.2019.03.3 ../../../lib/libRDKitForceField.so.1.2019.03.3 ../../../lib/libRDKitOptimizer.so.1.2019.03.3 ../../../lib/libRDKitTrajectory.so.1.2019.03.3 ../../../lib/libRDKitGraphMol.so.1.2019.03.3 ../../../lib/libRDKitEigenSolvers.so.1.2019.03.3 ../../../lib/libRDKitAlignment.so.1.2019.03.3 ../../../lib/libRDKitRDGeometryLib.so.1.2019.03.3 ../../../lib/libRDKitDataStructs.so.1.2019.03.3 ../../../lib/libRDKitRDGeneral.so.1.2019.03.3 -lpthread
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target testMolAlign
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles 0
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
+ chrpath -d librdkit.so
+ popd
~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
~/build/BUILD/rdkit-Release_2019_03_3
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.mLkypc
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64
++ dirname /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64
+ cd rdkit-Release_2019_03_3
~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
+ pushd python3
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64
/usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 -B/builddir/build/BUILD/rdkit-Release_2019_03_3/python3 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2019_03_3/python3//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 0%] Built target catch
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 10%] Built target GraphMol
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 10%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 10%] Built target MolTransforms
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 10%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 10%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 11%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 11%] Built target RDInchiLib
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 15%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 15%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 15%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target testInchi
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/rdkit/Chem/inchi.py
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target inchi_support
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target rdinchi
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target coordgen_support
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 17%] Built target testRDValue
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 18%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Built target rdBase
make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/RDStreams/CMakeFiles/RDStreams.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Built target RDStreams
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Built target testMultiFPB
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 19%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 20%] Built target testDataStructs
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 22%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 22%] Built target testGrid
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 23%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Built target rdAlignment
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 24%] Built target Trajectory
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 25%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 26%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 29%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 30%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 30%] Built target testUFFForceField
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Built target DistGeomHelpers
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 31%] Built target MolAlign
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 32%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 32%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 32%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 33%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 33%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 33%] Built target graphmolSGroupCatch
make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 34%] Built target graphmolTestsCatch
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/testSGroup.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/testSGroup.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target testSGroup
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 35%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 36%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 37%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 38%] Built target hanoiTest
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target graphmolMemTest1
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target smaTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target smiTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target smiTestCatch
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 39%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target smiTest2
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target testExtendedStereoParsing
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 40%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target fileParsersCatchTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target testPropertyLists
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target testSubstructMatch
make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 41%] Built target substructTestCatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 42%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 44%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 47%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 48%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 48%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 49%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 50%] Built target rxnTestCatch
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 50%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 51%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 52%] Built target testSubgraphs2
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 52%] Built target testSubgraphs1
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 52%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 53%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 54%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 55%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 56%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 57%] Built target fpTestCatch
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 57%] Built target testFingerprintGenerators
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 57%] Built target testFingerprints
make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Built target rdFingerprintGenerator
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 58%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 59%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 60%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 60%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 61%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 62%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 62%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 62%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 63%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 64%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 65%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 65%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 66%] Built target moldraw2DTestCatch
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 67%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 67%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 68%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 69%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 70%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 71%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 71%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 71%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 73%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 74%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 74%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 74%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 75%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 76%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 76%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 77%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 78%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 79%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 80%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 80%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 82%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 82%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 83%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 85%] Built target rdtrajectory
make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target MolStandardize
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target molStandardizeTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target molNormalizeTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target molValidateTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target molChargeTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 88%] Built target molFragmentTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 89%] Built target molTautomerTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 90%] Built target molStandardizeCatchTest
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 90%] Built target molStandardizeSmallTest
make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 91%] Built target rdMolStandardize
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 92%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 93%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 94%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 95%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 96%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 97%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 97%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[ 98%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3 /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
[100%] Built target rdkit
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2019_03_3/python3'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/cmake/rdkit/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/cmake/rdkit/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/cmake/rdkit/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/cmake/rdkit/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/CTestTestfile.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDConfig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDLogger.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDRandom.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/TestRunner.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/_py2_pickle.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/six.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/cactvs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/chemdraw.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/chemdraw_qax.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/chemutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/comhack.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/fileutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/listutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/spiral.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/test3.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/test2.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/test1.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/retest.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/utils/12h.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Filter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Node.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/VLib/NodeLib/__init__.py
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-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/RDBoost/boost_numpy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDataStructs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDataStructs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/base64.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/BitOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/DatastructsStreamOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRDGeometryLib.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/point.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitAlignment.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitAlignment.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitEigenSolvers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitEigenSolvers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitOptimizer.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitOptimizer.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitOptimizer.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitOptimizer.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceField.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceField.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceField.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeometry.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeometry.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitCatalogs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitCatalogs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitGraphMol.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitGraphMol.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitGraphMol.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitGraphMol.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SubstanceGroup.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StereoGroup.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDepictor.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDepictor.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDepictor.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSmilesParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSmilesParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFileParsers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFileParsers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructMatch.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructMatch.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemReactions.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemReactions.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemReactions.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubgraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubgraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFilterCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFilterCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFragCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFragCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDescriptors.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDescriptors.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFingerprints.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFingerprints.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFingerprints.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFingerprints.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitPartialCharges.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitPartialCharges.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitForceFieldHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeomHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdDistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolAlign.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolAlign.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolAlign.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolAlign.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolAlign.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitShapeHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitShapeHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolDraw2D.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolDraw2D.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFMCS.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFMCS.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdFMCS.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolHash.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolHash.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolHash.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolHash.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMolHash.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMMPA.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMMPA.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMMPA.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMMPA.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdMMPA.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitStructChecker.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitStructChecker.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitStructChecker.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitStructChecker.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdStructChecker.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitReducedGraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitReducedGraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitTrajectory.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitTrajectory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitTrajectory.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitTrajectory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSubstructLibrary.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitRGroupDecomposition.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSLNParse.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSLNParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSLNParse.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSLNParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdSLNParse.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdchem.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolStandardize.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitMolStandardize.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Metal.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Validate.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Charge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSimDivPickers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKithc.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKithc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitInfoTheory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitInfoTheory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/RDPaths.py
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/pgsql/rdkit.so
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit--3.7.sql /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/pgsql/extension/rdkit--3.7.sql
+ popd
~/build/BUILD/rdkit-Release_2019_03_3/python3 ~/build/BUILD/rdkit-Release_2019_03_3
~/build/BUILD/rdkit-Release_2019_03_3
+ popd
+ rm -r /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64//usr/share/RDKit
+ FMCS=/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/fmcs/fmcs
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2019.03.3-13.fc34 --unique-debug-suffix -2019.03.3-13.fc34.x86_64 --unique-debug-src-base rdkit-2019.03.3-13.fc34.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2019_03_3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitAlignment.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/RDStreams/libRDKitRDStreams.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitCatalogs.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemReactions.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDataStructs.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDepictor.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDescriptors.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFMCS.so.1.2019.03.3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/libRDKitFileParsers.so.1.2019.03.3
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolfiles.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdmolops.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdqueries.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Chem/rdtrajectory.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ForceField/rdForceField.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Geometry/rdGeometry.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/Data/cQuantize.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/Numerics/rdAlignment.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9/site-packages/rdkit/rdBase.so
original debug info size: 442528kB, size after compression: 330840kB
/usr/lib/rpm/sepdebugcrcfix: Updated 90 CRC32s, 0 CRC32s did match.
14500 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib/debug/usr/lib64/python3.9 using /usr/bin/python3.9
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/lib64/python3.9 using /usr/bin/python3.9
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/share/pgsql/extension/rdkit--3.7.sql is executable but has no shebang, removing executable bit
*** WARNING: ./usr/share/pgsql/extension/rdkit.control is executable but has no shebang, removing executable bit
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.jD5utP
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2019_03_3
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: rdkit-2019.03.3-13.fc34.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VHHtJ0
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2019_03_3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/doc/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/doc/rdkit
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/doc/rdkit
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.NihsOP
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2019_03_3
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/licenses/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/licenses/rdkit
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/licenses/rdkit
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2019.03.3-13.fc34 rdkit(x86-64) = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_iostreams.so.1.73.0()(64bit) libboost_python39.so.1.73.0()(64bit) libboost_serialization.so.1.73.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.9.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2019.03.3-13.fc34.x86_64
Provides: cmake(rdkit) = 1.2019.03.3 rdkit-devel = 2019.03.3-13.fc34 rdkit-devel(x86-64) = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: cmake-filesystem(x86-64) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit)
Processing files: rdkit-doc-2019.03.3-13.fc34.noarch
Processing files: python3-rdkit-2019.03.3-13.fc34.x86_64
Provides: python-rdkit = 2019.03.3-13.fc34 python3-rdkit = 2019.03.3-13.fc34 python3-rdkit(x86-64) = 2019.03.3-13.fc34 python3.9-rdkit = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python39.so.1.73.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.9.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.9 rtld(GNU_HASH)
Obsoletes: python-rdkit < 2019.03.3-13.fc34
Processing files: rdkit-postgresql-2019.03.3-13.fc34.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lilywq
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2019_03_3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/doc/rdkit-postgresql
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/doc/rdkit-postgresql
+ cp -pr python3/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64/usr/share/doc/rdkit-postgresql
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: librdkit.so()(64bit) rdkit-postgresql = 2019.03.3-13.fc34 rdkit-postgresql(x86-64) = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debugsource-2019.03.3-13.fc34.x86_64
Provides: rdkit-debugsource = 2019.03.3-13.fc34 rdkit-debugsource(x86-64) = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: rdkit-debuginfo-2019.03.3-13.fc34.x86_64
Provides: debuginfo(build-id) = 0afa8cd1de0235014b58a7ff8592036b5bc4a7d3 debuginfo(build-id) = 0dd148e2da4b5924acdd87ce7c1a1913e3c0b8b4 debuginfo(build-id) = 15d788c10271002198fe120cd6d1547caac81e6f debuginfo(build-id) = 19644c7d0abd03aa0b2ad28ad6aa187bc7341d6c debuginfo(build-id) = 19da440d6b2089e0b83e5b9b28b81ccabd039431 debuginfo(build-id) = 1ae9e9c6c81c346436d1a9685b37fc1fe93421f5 debuginfo(build-id) = 1e6113f7e35ce75400d1a74e1b923841d7ab7307 debuginfo(build-id) = 1e83781db3cb5508a6d8d838b63b842843839d7f debuginfo(build-id) = 25ee4053c6aa7bb2539d1e5d7858517e810a5e1d debuginfo(build-id) = 2a199c46f36b9d8ff41f3921d6c1d501164505f8 debuginfo(build-id) = 2d130722484f4fa68db8cda4aa816713bc3deb69 debuginfo(build-id) = 3135302945afe7445f2e8c32b11eec77afb27067 debuginfo(build-id) = 36b0f740a7679ea73babf00e548f4c89f8eeebf4 debuginfo(build-id) = 3e80ca0ea1190a34e98b933314551f73183c6627 debuginfo(build-id) = 3fc86a396f7e64b5cb2a14c82405cad50a2d50c6 debuginfo(build-id) = 55376a4ea4219ac6995816be913a14a1ba645edc debuginfo(build-id) = 5a0d8fdaa28f1180df7aae68b5ce01caf3f7e38a debuginfo(build-id) = 617754910f69b63e640671cc224f0285ecae1cff debuginfo(build-id) = 623b3286a08e4a09e08ee3a13befbc094eb4302c debuginfo(build-id) = 6e14a9e70431afedf1e016a583942b714a960287 debuginfo(build-id) = 6ff38a58b8f27e7d824ce0d5a49b90329e3625ef debuginfo(build-id) = 73576f9f48f81a5bf42390f32930181467fc9f11 debuginfo(build-id) = 745b6542e1de20970f2b75c4474bd421f6e68b99 debuginfo(build-id) = 752a6147ed4ab32c5b5cd15620cebf65edd596b6 debuginfo(build-id) = 81576da2ebaa41af6161f9b19be516b447644337 debuginfo(build-id) = 8c30826c9567a3b06fa5dc35fd1650fefbf43a0c debuginfo(build-id) = 93c9a85cebd9d761ee25894607ced2dcddbd74a4 debuginfo(build-id) = 9ac36a5687b45944c52a0a0c8a4375671a916238 debuginfo(build-id) = 9df4d655d8c6280b0ab41ab73ee28e5a50e9069c debuginfo(build-id) = 9e12d2201ca5c16ba24e55fd044b4f4e8df3b96b debuginfo(build-id) = 9fdf2d1a75bbcaaa3f154d0d935facf4356a3923 debuginfo(build-id) = b618dfd41ad57aa265605f8c3338bbc6b2d4743c debuginfo(build-id) = bae29855f2005e1011235ffc925136ecd58ed68f debuginfo(build-id) = bbb3779a5b05c0038acd5aede1accbaa94965533 debuginfo(build-id) = bec53cefe130035e7a9a8e3fc888b86d13caeec1 debuginfo(build-id) = c051816bf52bc526817d8bb99fe04c7f92b8d3c0 debuginfo(build-id) = c15fca18d3eb6e7b11ff6b2086d0c3e2ec696084 debuginfo(build-id) = c32222e2852e649acf8765b2d3f0821b7c332202 debuginfo(build-id) = c4b63118f313d33244c49e46971d8d027c35df79 debuginfo(build-id) = c711518f1c1fa167f4596e68a0c7a9dd0213e91f debuginfo(build-id) = cad747b32139774798d5002f74bdf6422d00c488 debuginfo(build-id) = d265b195fd624e26060e7b2252f2ca3e08b4e82d debuginfo(build-id) = d3e421e201d07ca774ee7cf77b277073d687ab9f debuginfo(build-id) = e18bbe7c731a315e1bfa7afd07a9dc7a4696b5c7 debuginfo(build-id) = e6da6d0d62be695c533fde7d1788d706f083d9f4 debuginfo(build-id) = e8a4205353e237cf2cf878c10f0186c634919d1d debuginfo(build-id) = e8c2126c93174a41a17e4ada04f2448818cbb22c rdkit-debuginfo = 2019.03.3-13.fc34 rdkit-debuginfo(x86-64) = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2019.03.3-13.fc34
Processing files: python3-rdkit-debuginfo-2019.03.3-13.fc34.x86_64
Provides: debuginfo(build-id) = 0036bb54f0a91bdf17a94aa7dcdec620a0a489a3 debuginfo(build-id) = 01241206385be8562416a66b7853e62e50d352e7 debuginfo(build-id) = 0ba65827abe0a7724432a67de1bcbc08a19b24be debuginfo(build-id) = 0bc021bf148b863e16e6f0ab84ce8bafe892e4a2 debuginfo(build-id) = 19710f9109217d34b822b83314b3fdc6a9a974d6 debuginfo(build-id) = 1c349337b6d0ae85a113a13e662460c71cf359c5 debuginfo(build-id) = 25d7a4b418778e03dae38fa43473ac859570bb0d debuginfo(build-id) = 289ca6d88972ec5e9329b13e73eab963d79bf689 debuginfo(build-id) = 2f3995de58b1989b1eb9bfeb49f924c9e7bc5ae2 debuginfo(build-id) = 2f6605f0e7fce95d13b462a9fa8dadd1311049f8 debuginfo(build-id) = 32810e5e8399cc693c0f52a732540dccec6e60dd debuginfo(build-id) = 33143cf59b1004045c8186a79aa336e139f46e7f debuginfo(build-id) = 443707746cfdd9624cbc54cb91962e69ffc3937f debuginfo(build-id) = 5553abded0deeb82ba8e758d8852a449e07fac87 debuginfo(build-id) = 602342b4b560dbf6aafd890d4c8a02961ac092e9 debuginfo(build-id) = 60823477c0ecb04e7060bcc036835b063ea6e71b debuginfo(build-id) = 64d02bdee417140bae29feccbc53158574444fa0 debuginfo(build-id) = 67ceab94256bae319e90de019e926f7fedb64a23 debuginfo(build-id) = 67d360c165db6e59580787c6902212d8a621bb61 debuginfo(build-id) = 7ebb30d5004a486ca6891da2e4da0939a735f6f0 debuginfo(build-id) = 8203da5f248a3f221a40bd13d728595e14d07724 debuginfo(build-id) = 85fe9050f902aa81effa0ce28fa3c4c9b81cdfe7 debuginfo(build-id) = 87f217981ca817d1e9b14b26e6adbd23b9c702ec debuginfo(build-id) = 9a432924078f05f46be6fc927c28023453e644e6 debuginfo(build-id) = 9c48588fad427dd76d43245e166ce54e470a1841 debuginfo(build-id) = 9d86e771f752e9c607bc72b7b18c80723a2653b2 debuginfo(build-id) = 9e7ab3fac719be4c49eb01ad43803dfd4d5335f8 debuginfo(build-id) = b4b5ed9bf99a2748b53c1aafaa760101a8f0d855 debuginfo(build-id) = c1ccc68bf22f54efa3672e148645e526c14e007a debuginfo(build-id) = cab60255ab3e308d1313bf68cae69415d2a20c93 debuginfo(build-id) = db6b1138c2584b6f1cba4b2615be4ed1dcb83ba9 debuginfo(build-id) = db86044a65a283903499907e5da00a93b0c0f4a1 debuginfo(build-id) = dd7acaf674c2a30140dc1529bc9a8787469acc0a debuginfo(build-id) = de096e1975b97183746b23e75328d37e46d8fc51 debuginfo(build-id) = e1cec772508d3857f8d186e0d94cc67c645ea056 debuginfo(build-id) = e2d6fd6e77297d534a5f2ec0f1fbdf0e74cb176b debuginfo(build-id) = e4ddd8e1b64cade5d51a443f1aa3d86e34516873 debuginfo(build-id) = eae1ba41269c889e87ce1a7e3236a20a65c60b7e debuginfo(build-id) = f03b41f4b4448a76805ab9ecad5593bd0d4bf260 debuginfo(build-id) = f09b3eda911d6aeea3a0767aff84d8e5f60ac788 debuginfo(build-id) = f40bc2417e438dde2e55ca53f6b2763ec9979afd debuginfo(build-id) = f51d5bbbc4b25b57b30446a7f05e556c9bdbde5a python-rdkit-debuginfo = 2019.03.3-13.fc34 python3-rdkit-debuginfo = 2019.03.3-13.fc34 python3-rdkit-debuginfo(x86-64) = 2019.03.3-13.fc34 python3.9-rdkit-debuginfo = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2019.03.3-13.fc34
Processing files: rdkit-postgresql-debuginfo-2019.03.3-13.fc34.x86_64
Provides: debuginfo(build-id) = d24431d3eb9ff4cbe2a661eb16f37dec79116e73 rdkit-postgresql-debuginfo = 2019.03.3-13.fc34 rdkit-postgresql-debuginfo(x86-64) = 2019.03.3-13.fc34
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2019.03.3-13.fc34
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debugsource-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2019.03.3-13.fc34.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2019.03.3-13.fc34.noarch.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2019.03.3-13.fc34.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.D1CGhO
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2019_03_3
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2019.03.3-13.fc34.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild rdkit-2019.03.3-13.fc34.src.rpm
Finish: build phase for rdkit-2019.03.3-13.fc34.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1611737408.650207/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1611737408.650207/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1611737408.650207/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/rdkit-2019.03.3-13.fc34.src.rpm) Config(child) 74 minutes 25 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
INFO: unmounting tmpfs.