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QCEmbedder

This application is used to embed tables or plots generated externally as attachments to existing quality parameters in qcML files.

pot. predecessor tools → QCEmbedder → pot. successor tools
QCExporter QCMerger
XTandemAdapter QCShrinker

If there is additional data from external tools to a certain quality parameter (qp) in the qcML file at in, it can be attached in tabluar (csv) format or as png image file. If no corresponding quality parameter is present an empty value one will be generated with the name of "default set name"/"default mzML file".

  • qp_att_acc defines the qp cv accession of the qp to which the table/image is attached.
  • cv_acc defines the cv accession of the attachment.
  • run the file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name.
  • name if no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given.
  • plot if a plot image is to be attached to a qp, this has to be specified here.
  • table if a table is to be attached to a qp, this has to be specified here.

Output is in qcML format (see parameter out) which can be viewed directly in a modern browser (chromium, firefox, safari).

The command line parameters of this tool are:

INI file documentation of this tool: