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QCImporter

Will import several quality parameter from a tabular (text) format into a qcML file - counterpart to QCExporter.

pot. predecessor tools → QCEmbedder → pot. successor tools
QCExporter QCMerger
XTandemAdapter QCShrinker

If there is additional data from external tools in tabular format containing additional quality parameter (qp) to runs or sets, or even new runs, these can be imported into the qcML file. For an example see the examples in the share directory.

  • table The table containing the additional qp values in the columns. First row is considered containing the header. The target run or set names/ids are indicated by column "raw data file", so each row after the header will contain the values of qps for that run.
  • mapping The mapping of the table header to the according qp cvs, also in csv format. The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions.

The command line parameters of this tool are:

INI file documentation of this tool: