OpenMS
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SageAdapter

Identifies peptides in MS/MS spectra via sage.

pot. predecessor tools → SageAdapter → pot. successor tools
any signal-/preprocessing tool
(in mzML format)
IDFilter or
any protein/peptide processing tool

Sage must be installed before this wrapper can be used.

Only the closed-search identification mode of Sage is supported by this adapter. Currently, also neither "wide window" (= open or DIA) mode, nor "chimeric" mode is supported, because of limitations in OpenMS' data structures and file formats.

The command line parameters of this tool are:

INI file documentation of this tool: