OpenMS
Loading...
Searching...
No Matches
NucleicAcidSearchEngine Member List

This is the complete list of members for NucleicAcidSearchEngine, including all inherited members.

ambiguous_mods_NucleicAcidSearchEngineprotected
calculateAndFilterFDR_(IdentificationData &id_data, bool only_top_hits)NucleicAcidSearchEngineinlineprotected
calculatePrecursorMass_(double mz, Int charge, Int isotope, double adduct_mass, bool negative_mode)NucleicAcidSearchEngineinlineprotected
ConstRibonucleotidePtr typedefNucleicAcidSearchEngineprivate
deisotopeAndSingleChargeMSSpectrum_(MSSpectrum &in, Int min_charge, Int max_charge, double fragment_tolerance, bool fragment_unit_ppm, bool keep_only_deisotoped=false, Size min_isopeaks=3, Size max_isopeaks=10, bool make_single_charged=true)NucleicAcidSearchEngineinlineprotected
fragment_ion_codes_NucleicAcidSearchEngineprotected
generateLFQInput_(IdentificationData &id_data, const String &out_file)NucleicAcidSearchEngineinlineprotected
getModifications_(const set< String > &mod_names)NucleicAcidSearchEngineinlineprotected
HitsByScore typedefNucleicAcidSearchEngineprotected
main_(int, const char **) overrideNucleicAcidSearchEngineinlineprotected
NucleicAcidSearchEngine()NucleicAcidSearchEngineinline
parseAdduct_(const String &adduct)NucleicAcidSearchEngineinlineprotected
postProcessHits_(const PeakMap &exp, vector< HitsByScore > &annotated_hits, IdentificationData &id_data, bool negative_mode)NucleicAcidSearchEngineinlineprotected
preprocessSpectra_(PeakMap &exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, bool single_charge_spectra, bool negative_mode, Int min_charge, Int max_charge, bool include_unknown_charge)NucleicAcidSearchEngineinlineprotected
registerOptionsAndFlags_() overrideNucleicAcidSearchEngineinlineprotected
resolve_ambiguous_mods_NucleicAcidSearchEngineprotected
resolveAmbiguousMods_(HitsByScore &hits)NucleicAcidSearchEngineinlineprotected