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OpenMS
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A tool for splitting a single SWATH / DIA file into a set of files, each containing one SWATH window (plus one file for the MS1 survey scans).
Will use the input SWATH / DIA file to generate one output file containing the MS1 survey scans and n individual files for each SWATH / DIA window in the input file. The number of windows is read from the input file itself.
The command line parameters of this tool are:
INI file documentation of this tool: