#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/MATH/STATISTICS/StatisticFunctions.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/METADATA/SpectrumSettings.h>
#include <OpenMS/METADATA/ID/IdentificationData.h>
#include <OpenMS/METADATA/ID/IdentificationDataConverter.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/MzTabFile.h>
#include <OpenMS/FORMAT/OMSFile.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/CHEMISTRY/RNaseDigestion.h>
#include <OpenMS/CHEMISTRY/RNaseDB.h>
#include <OpenMS/CHEMISTRY/RibonucleotideDB.h>
#include <OpenMS/CHEMISTRY/ElementDB.h>
#include <OpenMS/CHEMISTRY/ModifiedNASequenceGenerator.h>
#include <OpenMS/CHEMISTRY/NASequence.h>
#include <OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h>
#include <OpenMS/FILTERING/TRANSFORMERS/NLargest.h>
#include <OpenMS/FILTERING/TRANSFORMERS/WindowMower.h>
#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>
#include <OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h>
#include <OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h>
#include <OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/FILTERING/ID/IDFilter.h>
#include <QtCore/QProcess>
#include <algorithm>
#include <iostream>
#include <vector>
#include <map>
#include <regex>
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int | main (int argc, const char **argv) |
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◆ NucleicAcidSearchEngine::AnnotatedHit
struct NucleicAcidSearchEngine::AnnotatedHit |
Class Members |
vector< PeakAnnotation > |
annotations |
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IdentifiedOligoRef |
oligo_ref |
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double |
precursor_error_ppm |
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const PrecursorInfo * |
precursor_ref |
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NASequence |
sequence |
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◆ NUMBER_OF_THREADS
#define NUMBER_OF_THREADS (1) |
◆ main()
int main |
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int |
argc, |
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const char ** |
argv |
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) |
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