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OpenMS
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Computes a protein identification score based on an aggregation of scores of identified peptides.
pot. predecessor tools | → ProteinInterference → | pot. successor tools |
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CometAdapter (or other ID engines) | PeptideIndexer | |
FalseDiscoveryRate | ||
IDFilter |
This tool counts and aggregates the scores of peptide sequences that match a protein accession. Only the top PSM for a peptide is used. By default it also annotates the number of peptides used for the calculation (metavalue "nr_found_peptides") and can be used for further filtering. 0 probability peptides are counted but ignored in aggregation method "multiplication".