OpenMS
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OpenSwathAnalyzer

Executes a peak-picking and scoring algorithm on MRM/SRM data.

potential predecessor tools → OpenSwathAnalyzer → potential successor tools
OpenSwathChromatogramExtractor OpenSwathFeatureXMLToTSV
MRMMapper OpenSwathConfidenceScoring

The idea of the OpenSwath Analyzer is to analyze a series of chromatograms together with the associated meta information (stored in TraML format) in order to determine likely places of elution of a peptide in targeted proteomics data (derived from SWATH-MS or MRM/SRM). This tool will perform peak picking on the chromatograms and scoring in a single tool, if you only want the peak picking look at TOPP_MRMTransitionGroupPicker tool.

The command line parameters of this tool are:

INI file documentation of this tool: