Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c111' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6745477-fedora-rawhide-i386 --chroot fedora-rawhide-i386


Version: 0.70
PID: 9163
Logging PID: 9164
Task:
{'appstream': False,
 'background': True,
 'build_id': 6745477,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '6d6c47192c97f2eb47c4560eb5b8289ef5db1103',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/avogadro2-libs',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'avogadro2-libs',
 'package_version': '1.98.1-1',
 'project_dirname': 'boost-1.83-all-arches',
 'project_name': 'boost-1.83-all-arches',
 'project_owner': 'ppalka',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ppalka/boost-1.83-all-arches/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ppalka/boost-1.83-all-arches--ppalka',
 'source_json': {},
 'source_type': None,
 'submitter': 'ppalka',
 'tags': [],
 'task_id': '6745477-fedora-rawhide-i386',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs'...

Running: git checkout 6d6c47192c97f2eb47c4560eb5b8289ef5db1103 --

cmd: ['git', 'checkout', '6d6c47192c97f2eb47c4560eb5b8289ef5db1103', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs
rc: 0
stdout: 
stderr: Note: switching to '6d6c47192c97f2eb47c4560eb5b8289ef5db1103'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 6d6c471 automatic import of avogadro2-libs

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs
rc: 0
stdout: 
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading avogadrolibs-1.98.1.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o avogadrolibs-1.98.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83-all-arches/avogadro2-libs/avogadrolibs-1.98.1.tar.gz/md5/6e8d34caae91cbd1031a194893066cae/avogadrolibs-1.98.1.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 4494k  100 4494k    0     0  11.5M      0 --:--:-- --:--:-- --:--:-- 11.5M
INFO: Reading stdout from command: md5sum avogadrolibs-1.98.1.tar.gz
INFO: Downloading avogenerators-1.98.0.tar.gz
INFO: Calling: curl -H Pragma: -o avogenerators-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83-all-arches/avogadro2-libs/avogenerators-1.98.0.tar.gz/md5/74b508114f30f469256a19ebc4996f87/avogenerators-1.98.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 15676  100 15676    0     0   203k      0 --:--:-- --:--:-- --:--:--  206k
INFO: Reading stdout from command: md5sum avogenerators-1.98.0.tar.gz
INFO: Downloading crystals-1.98.0.tar.gz
INFO: Calling: curl -H Pragma: -o crystals-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83-all-arches/avogadro2-libs/crystals-1.98.0.tar.gz/md5/07733a52b8a6572adb353abb6044d6f6/crystals-1.98.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 53.3M  100 53.3M    0     0  6325k      0  0:00:08  0:00:08 --:--:-- 5362k
INFO: Reading stdout from command: md5sum crystals-1.98.0.tar.gz
INFO: Downloading molecules-1.98.0.tar.gz
INFO: Calling: curl -H Pragma: -o molecules-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83-all-arches/avogadro2-libs/molecules-1.98.0.tar.gz/md5/789264f5a03f37bf336d2904abe9cd3d/molecules-1.98.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 9720k  100 9720k    0     0  27.8M      0 --:--:-- --:--:-- --:--:-- 27.8M
INFO: Reading stdout from command: md5sum molecules-1.98.0.tar.gz

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1702407566.442991 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1702407566.442991 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs/avogadro2-libs.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.2
INFO: Mock Version: 5.2
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1702407566.442991/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1702407566.442991/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/ef7f879f9a7c8f3b179a505bc57c531f411bc8d830c8c86540e47c3fe4f37c04/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/ef7f879f9a7c8f3b179a505bc57c531f411bc8d830c8c86540e47c3fe4f37c04/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 4.1 MB/s | 559 kB     00:00    
local                                            64 MB/s |  71 MB     00:01    
Package python3-dnf-4.18.2-1.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch       Version                Repo       Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch     4.4.4-1.fc40           local     302 k
Installing dependencies:
 dbus-libs                    x86_64     1:1.14.10-1.fc40       local     155 k
 python3-dateutil             noarch     1:2.8.2-11.fc40        local     345 k
 python3-dbus                 x86_64     1.3.2-4.fc39           local     146 k
 python3-distro               noarch     1.8.0-6.fc39           local      44 k
 python3-six                  noarch     1.16.0-12.fc39         local      41 k
 python3-systemd              x86_64     235-5.fc39             local     101 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.1 M
Installed size: 3.6 M
Downloading Packages:
(1/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm     2.0 MB/s | 146 kB     00:00    
(2/7): python3-distro-1.8.0-6.fc39.noarch.rpm   4.1 MB/s |  44 kB     00:00    
(3/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm      1.7 MB/s | 155 kB     00:00    
(4/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 3.5 MB/s | 345 kB     00:00    
(5/7): python3-six-1.16.0-12.fc39.noarch.rpm    3.4 MB/s |  41 kB     00:00    
(6/7): python3-dnf-plugins-core-4.4.4-1.fc40.no  14 MB/s | 302 kB     00:00    
(7/7): python3-systemd-235-5.fc39.x86_64.rpm    7.2 MB/s | 101 kB     00:00    
--------------------------------------------------------------------------------
Total                                           9.7 MB/s | 1.1 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.x86_64                      1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-11.fc40.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.x86_64                      5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.x86_64                       6/7 
  Installing       : python3-dnf-plugins-core-4.4.4-1.fc40.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.4-1.fc40.noarch           7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.x86_64                                             
  python3-dateutil-1:2.8.2-11.fc40.noarch                                       
  python3-dbus-1.3.2-4.fc39.x86_64                                              
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.4-1.fc40.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.x86_64                                             

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1702407566.442991/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 5.0 MB/s | 559 kB     00:00    
local                                            26 MB/s |  60 MB     00:02    
Dependencies resolved.
================================================================================
 Package                       Arch   Version                       Repo   Size
================================================================================
Installing group/module packages:
 bash                          i686   5.2.21-2.fc40                 local 1.8 M
 bzip2                         i686   1.0.8-16.fc39                 local  53 k
 coreutils                     i686   9.4-1.fc40                    local 1.2 M
 cpio                          i686   2.14-5.fc40                   local 278 k
 diffutils                     i686   3.10-3.fc39                   local 394 k
 fedora-release                noarch 40-0.20                       local 9.3 k
 findutils                     i686   1:4.9.0-6.fc40                local 492 k
 gawk                          i686   5.2.2-2.fc39                  local 1.0 M
 glibc-minimal-langpack        i686   2.38.9000-26.fc40             local  85 k
 grep                          i686   3.11-5.fc40                   local 294 k
 gzip                          i686   1.12-6.fc39                   local 158 k
 info                          i686   7.1-1.fc40                    local 187 k
 patch                         i686   2.7.6-22.fc39                 local 138 k
 redhat-rpm-config             noarch 271-1.fc40                    local  74 k
 rpm-build                     i686   4.19.1-1.fc40                 local  72 k
 sed                           i686   4.8-14.fc39                   local 300 k
 shadow-utils                  i686   2:4.14.0-2.fc40               local 1.2 M
 tar                           i686   2:1.35-2.fc40                 local 864 k
 unzip                         i686   6.0-62.fc39                   local 180 k
 util-linux                    i686   2.39.2-1.fc40                 local 1.2 M
 which                         i686   2.21-40.fc39                  local  42 k
 xz                            i686   5.4.5-1.fc40                  local 535 k
Installing dependencies:
 alternatives                  i686   1.25-1.fc39                   local  39 k
 ansible-srpm-macros           noarch 1-11.fc39                     local  21 k
 audit-libs                    i686   3.1.2-5.fc40                  local 125 k
 authselect                    i686   1.4.3-1.fc40                  local 145 k
 authselect-libs               i686   1.4.3-1.fc40                  local 237 k
 basesystem                    noarch 11-18.fc39                    local 7.2 k
 binutils                      i686   2.41-16.fc40                  local 5.9 M
 binutils-gold                 i686   2.41-16.fc40                  local 863 k
 bzip2-libs                    i686   1.0.8-16.fc39                 local  41 k
 ca-certificates               noarch 2023.2.62_v7.0.401-4.fc40     local 863 k
 coreutils-common              i686   9.4-1.fc40                    local 2.1 M
 cracklib                      i686   2.9.11-2.fc39                 local  83 k
 crypto-policies               noarch 20231204-1.git1e3a2e4.fc40    local  69 k
 curl                          i686   8.5.0-1.fc40                  local 375 k
 cyrus-sasl-lib                i686   2.1.28-11.fc39                local 857 k
 debugedit                     i686   5.0-12.fc40                   local  80 k
 dwz                           i686   0.15-3.fc39                   local 139 k
 ed                            i686   1.19-4.fc39                   local  78 k
 efi-srpm-macros               noarch 5-9.fc39                      local  22 k
 elfutils                      i686   0.190-4.fc40                  local 568 k
 elfutils-debuginfod-client    i686   0.190-4.fc40                  local  38 k
 elfutils-default-yama-scope   noarch 0.190-4.fc40                  local  13 k
 elfutils-libelf               i686   0.190-4.fc40                  local 201 k
 elfutils-libs                 i686   0.190-4.fc40                  local 290 k
 fedora-gpg-keys               noarch 40-0.2                        local 119 k
 fedora-release-common         noarch 40-0.20                       local  20 k
 fedora-release-identity-basic noarch 40-0.20                       local  10 k
 fedora-repos                  noarch 40-0.2                        local 9.3 k
 fedora-repos-rawhide          noarch 40-0.2                        local 8.9 k
 file                          i686   5.45-1.fc40                   local  49 k
 file-libs                     i686   5.45-1.fc40                   local 770 k
 filesystem                    i686   3.18-6.fc39                   local 1.1 M
 fonts-srpm-macros             noarch 1:2.0.5-12.fc39               local  26 k
 forge-srpm-macros             noarch 0.2.0-1.fc40                  local  18 k
 fpc-srpm-macros               noarch 1.3-8.fc39                    local 7.4 k
 gdb-minimal                   i686   14.1-1.fc40                   local 4.6 M
 gdbm                          i686   1:1.23-4.fc39                 local 150 k
 gdbm-libs                     i686   1:1.23-4.fc39                 local  60 k
 ghc-srpm-macros               noarch 1.6.1-3.fc40                  local 8.1 k
 glibc                         i686   2.38.9000-26.fc40             local 2.0 M
 glibc-common                  i686   2.38.9000-26.fc40             local 374 k
 glibc-gconv-extra             i686   2.38.9000-26.fc40             local 1.7 M
 gmp                           i686   1:6.2.1-5.fc39                local 306 k
 gnat-srpm-macros              noarch 6-3.fc39                      local 8.8 k
 go-srpm-macros                noarch 3.3.1-1.fc40                  local  28 k
 jansson                       i686   2.13.1-7.fc39                 local  46 k
 kernel-srpm-macros            noarch 1.0-20.fc39                   local  10 k
 keyutils-libs                 i686   1.6.1-7.fc39                  local  32 k
 krb5-libs                     i686   1.21.2-2.fc40                 local 804 k
 libacl                        i686   2.3.1-11.fc40                 local  25 k
 libarchive                    i686   3.7.2-1.fc40                  local 450 k
 libattr                       i686   2.5.1-9.fc40                  local  18 k
 libblkid                      i686   2.39.2-1.fc40                 local 127 k
 libbrotli                     i686   1.1.0-1.fc40                  local 340 k
 libcap                        i686   2.69-1.fc40                   local  84 k
 libcap-ng                     i686   0.8.3-8.fc40                  local  33 k
 libcom_err                    i686   1.47.0-2.fc39                 local  26 k
 libcurl                       i686   8.5.0-1.fc40                  local 372 k
 libeconf                      i686   0.5.2-1.fc40                  local  32 k
 libevent                      i686   2.1.12-9.fc39                 local 277 k
 libfdisk                      i686   2.39.2-1.fc40                 local 175 k
 libffi                        i686   3.4.4-4.fc39                  local  38 k
 libgcc                        i686   13.2.1-6.fc40                 local 121 k
 libgomp                       i686   13.2.1-6.fc40                 local 324 k
 libidn2                       i686   2.3.4-3.fc39                  local 111 k
 libmount                      i686   2.39.2-1.fc40                 local 161 k
 libnghttp2                    i686   1.58.0-1.fc40                 local  82 k
 libnsl2                       i686   2.0.0-6.fc39                  local  31 k
 libpkgconf                    i686   1.9.5-2.fc39                  local  41 k
 libpsl                        i686   0.21.2-4.fc39                 local  63 k
 libpwquality                  i686   1.4.5-6.fc39                  local 109 k
 libselinux                    i686   3.6-0.rc2.1.fc40              local  93 k
 libsemanage                   i686   3.6-0.rc2.1.fc40              local 125 k
 libsepol                      i686   3.6-0.rc2.1.fc40              local 352 k
 libsigsegv                    i686   2.14-5.fc39                   local  27 k
 libsmartcols                  i686   2.39.2-1.fc40                 local  69 k
 libssh                        i686   0.10.5-2.fc39                 local 226 k
 libssh-config                 noarch 0.10.5-2.fc39                 local 9.2 k
 libstdc++                     i686   13.2.1-6.fc40                 local 931 k
 libtasn1                      i686   4.19.0-3.fc39                 local  75 k
 libtirpc                      i686   1.3.4-0.fc40                  local 101 k
 libunistring                  i686   1.1-5.fc40                    local 551 k
 libutempter                   i686   1.2.1-10.fc39                 local  27 k
 libuuid                       i686   2.39.2-1.fc40                 local  29 k
 libverto                      i686   0.3.2-6.fc39                  local  21 k
 libxcrypt                     i686   4.4.36-2.fc39                 local 123 k
 libxml2                       i686   2.12.3-1.fc40                 local 729 k
 libzstd                       i686   1.5.5-4.fc39                  local 290 k
 lua-libs                      i686   5.4.6-3.fc39                  local 149 k
 lua-srpm-macros               noarch 1-9.fc39                      local 8.6 k
 lz4-libs                      i686   1.9.4-4.fc39                  local  70 k
 mpfr                          i686   4.2.1-1.fc40                  local 380 k
 ncurses-base                  noarch 6.4-8.20231001.fc40           local  63 k
 ncurses-libs                  i686   6.4-8.20231001.fc40           local 359 k
 ocaml-srpm-macros             noarch 9-1.fc40                      local 9.0 k
 openblas-srpm-macros          noarch 2-14.fc39                     local 7.5 k
 openldap                      i686   2.6.6-1.fc39                  local 273 k
 openssl-libs                  i686   1:3.1.4-1.fc40                local 2.1 M
 p11-kit                       i686   0.25.3-1.fc40                 local 490 k
 p11-kit-trust                 i686   0.25.3-1.fc40                 local 140 k
 package-notes-srpm-macros     noarch 0.5-9.fc39                    local  11 k
 pam                           i686   1.5.3-8.fc40                  local 528 k
 pam-libs                      i686   1.5.3-8.fc40                  local  60 k
 pcre2                         i686   10.42-2.fc40                  local 231 k
 pcre2-syntax                  noarch 10.42-2.fc40                  local 143 k
 perl-srpm-macros              noarch 1-51.fc39                     local 8.0 k
 pkgconf                       i686   1.9.5-2.fc39                  local  43 k
 pkgconf-m4                    noarch 1.9.5-2.fc39                  local  14 k
 pkgconf-pkg-config            i686   1.9.5-2.fc39                  local 9.6 k
 popt                          i686   1.19-3.fc39                   local  62 k
 publicsuffix-list-dafsa       noarch 20230812-1.fc40               local  57 k
 pyproject-srpm-macros         noarch 1.10.0-1.fc40                 local  14 k
 python-srpm-macros            noarch 3.12-5.fc40                   local  25 k
 qt5-srpm-macros               noarch 5.15.11-1.fc40                local 8.3 k
 qt6-srpm-macros               noarch 6.6.1-1.fc40                  local 8.6 k
 readline                      i686   8.2-4.fc39                    local 218 k
 rpm                           i686   4.19.1-1.fc40                 local 507 k
 rpm-build-libs                i686   4.19.1-1.fc40                 local 102 k
 rpm-libs                      i686   4.19.1-1.fc40                 local 341 k
 rpm-sequoia                   i686   1.5.0-2.fc40                  local 945 k
 rust-srpm-macros              noarch 25.2-2.fc40                   local  13 k
 setup                         noarch 2.14.5-1.fc40                 local 148 k
 sqlite-libs                   i686   3.44.2-1.fc40                 local 733 k
 systemd-libs                  i686   255-1.fc40                    local 743 k
 util-linux-core               i686   2.39.2-1.fc40                 local 491 k
 xxhash-libs                   i686   0.8.2-1.fc39                  local  49 k
 xz-libs                       i686   5.4.5-1.fc40                  local 118 k
 zip                           i686   3.0-39.fc40                   local 267 k
 zlib                          i686   1.2.13-5.fc40                 local  93 k
 zstd                          i686   1.5.5-4.fc39                  local 451 k
Installing Groups:
 build                                                                         

Transaction Summary
================================================================================
Install  152 Packages

Total download size: 53 M
Installed size: 175 M
Downloading Packages:
(1/152): ansible-srpm-macros-1-11.fc39.noarch.r 245 kB/s |  21 kB     00:00    
(2/152): alternatives-1.25-1.fc39.i686.rpm      371 kB/s |  39 kB     00:00    
(3/152): audit-libs-3.1.2-5.fc40.i686.rpm       1.1 MB/s | 125 kB     00:00    
(4/152): authselect-1.4.3-1.fc40.i686.rpm       4.2 MB/s | 145 kB     00:00    
(5/152): basesystem-11-18.fc39.noarch.rpm       628 kB/s | 7.2 kB     00:00    
(6/152): authselect-libs-1.4.3-1.fc40.i686.rpm  6.9 MB/s | 237 kB     00:00    
(7/152): bash-5.2.21-2.fc40.i686.rpm             26 MB/s | 1.8 MB     00:00    
(8/152): binutils-gold-2.41-16.fc40.i686.rpm     13 MB/s | 863 kB     00:00    
(9/152): bzip2-1.0.8-16.fc39.i686.rpm           2.4 MB/s |  53 kB     00:00    
(10/152): bzip2-libs-1.0.8-16.fc39.i686.rpm     1.9 MB/s |  41 kB     00:00    
(11/152): ca-certificates-2023.2.62_v7.0.401-4.  20 MB/s | 863 kB     00:00    
(12/152): coreutils-9.4-1.fc40.i686.rpm          11 MB/s | 1.2 MB     00:00    
(13/152): coreutils-common-9.4-1.fc40.i686.rpm   24 MB/s | 2.1 MB     00:00    
(14/152): binutils-2.41-16.fc40.i686.rpm         26 MB/s | 5.9 MB     00:00    
(15/152): cpio-2.14-5.fc40.i686.rpm              11 MB/s | 278 kB     00:00    
(16/152): cracklib-2.9.11-2.fc39.i686.rpm       4.7 MB/s |  83 kB     00:00    
(17/152): crypto-policies-20231204-1.git1e3a2e4 4.9 MB/s |  69 kB     00:00    
(18/152): curl-8.5.0-1.fc40.i686.rpm             19 MB/s | 375 kB     00:00    
(19/152): debugedit-5.0-12.fc40.i686.rpm        3.9 MB/s |  80 kB     00:00    
(20/152): cyrus-sasl-lib-2.1.28-11.fc39.i686.rp  29 MB/s | 857 kB     00:00    
(21/152): diffutils-3.10-3.fc39.i686.rpm         20 MB/s | 394 kB     00:00    
(22/152): dwz-0.15-3.fc39.i686.rpm              9.4 MB/s | 139 kB     00:00    
(23/152): efi-srpm-macros-5-9.fc39.noarch.rpm   1.7 MB/s |  22 kB     00:00    
(24/152): ed-1.19-4.fc39.i686.rpm               4.7 MB/s |  78 kB     00:00    
(25/152): elfutils-0.190-4.fc40.i686.rpm         24 MB/s | 568 kB     00:00    
(26/152): elfutils-debuginfod-client-0.190-4.fc 2.2 MB/s |  38 kB     00:00    
(27/152): elfutils-default-yama-scope-0.190-4.f 792 kB/s |  13 kB     00:00    
(28/152): fedora-gpg-keys-40-0.2.noarch.rpm     9.5 MB/s | 119 kB     00:00    
(29/152): elfutils-libelf-0.190-4.fc40.i686.rpm  12 MB/s | 201 kB     00:00    
(30/152): elfutils-libs-0.190-4.fc40.i686.rpm    16 MB/s | 290 kB     00:00    
(31/152): fedora-release-40-0.20.noarch.rpm     838 kB/s | 9.3 kB     00:00    
(32/152): fedora-release-common-40-0.20.noarch. 1.8 MB/s |  20 kB     00:00    
(33/152): fedora-release-identity-basic-40-0.20 906 kB/s |  10 kB     00:00    
(34/152): fedora-repos-40-0.2.noarch.rpm        901 kB/s | 9.3 kB     00:00    
(35/152): fedora-repos-rawhide-40-0.2.noarch.rp 791 kB/s | 8.9 kB     00:00    
(36/152): file-5.45-1.fc40.i686.rpm             3.5 MB/s |  49 kB     00:00    
(37/152): file-libs-5.45-1.fc40.i686.rpm         35 MB/s | 770 kB     00:00    
(38/152): findutils-4.9.0-6.fc40.i686.rpm        19 MB/s | 492 kB     00:00    
(39/152): fonts-srpm-macros-2.0.5-12.fc39.noarc 1.4 MB/s |  26 kB     00:00    
(40/152): forge-srpm-macros-0.2.0-1.fc40.noarch 1.2 MB/s |  18 kB     00:00    
(41/152): filesystem-3.18-6.fc39.i686.rpm        20 MB/s | 1.1 MB     00:00    
(42/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 569 kB/s | 7.4 kB     00:00    
(43/152): gdbm-1.23-4.fc39.i686.rpm             7.2 MB/s | 150 kB     00:00    
(44/152): gawk-5.2.2-2.fc39.i686.rpm             29 MB/s | 1.0 MB     00:00    
(45/152): gdbm-libs-1.23-4.fc39.i686.rpm        2.7 MB/s |  60 kB     00:00    
(46/152): ghc-srpm-macros-1.6.1-3.fc40.noarch.r 466 kB/s | 8.1 kB     00:00    
(47/152): glibc-common-2.38.9000-26.fc40.i686.r  12 MB/s | 374 kB     00:00    
(48/152): glibc-2.38.9000-26.fc40.i686.rpm       24 MB/s | 2.0 MB     00:00    
(49/152): glibc-gconv-extra-2.38.9000-26.fc40.i  22 MB/s | 1.7 MB     00:00    
(50/152): glibc-minimal-langpack-2.38.9000-26.f 2.4 MB/s |  85 kB     00:00    
(51/152): gmp-6.2.1-5.fc39.i686.rpm             9.3 MB/s | 306 kB     00:00    
(52/152): gnat-srpm-macros-6-3.fc39.noarch.rpm  317 kB/s | 8.8 kB     00:00    
(53/152): gdb-minimal-14.1-1.fc40.i686.rpm       22 MB/s | 4.6 MB     00:00    
(54/152): go-srpm-macros-3.3.1-1.fc40.noarch.rp 1.2 MB/s |  28 kB     00:00    
(55/152): grep-3.11-5.fc40.i686.rpm              11 MB/s | 294 kB     00:00    
(56/152): gzip-1.12-6.fc39.i686.rpm             6.9 MB/s | 158 kB     00:00    
(57/152): info-7.1-1.fc40.i686.rpm              8.9 MB/s | 187 kB     00:00    
(58/152): jansson-2.13.1-7.fc39.i686.rpm        3.1 MB/s |  46 kB     00:00    
(59/152): kernel-srpm-macros-1.0-20.fc39.noarch 945 kB/s |  10 kB     00:00    
(60/152): keyutils-libs-1.6.1-7.fc39.i686.rpm   1.5 MB/s |  32 kB     00:00    
(61/152): krb5-libs-1.21.2-2.fc40.i686.rpm       27 MB/s | 804 kB     00:00    
(62/152): libacl-2.3.1-11.fc40.i686.rpm         1.0 MB/s |  25 kB     00:00    
(63/152): libarchive-3.7.2-1.fc40.i686.rpm       15 MB/s | 450 kB     00:00    
(64/152): libattr-2.5.1-9.fc40.i686.rpm         651 kB/s |  18 kB     00:00    
(65/152): libblkid-2.39.2-1.fc40.i686.rpm       4.3 MB/s | 127 kB     00:00    
(66/152): libbrotli-1.1.0-1.fc40.i686.rpm        13 MB/s | 340 kB     00:00    
(67/152): libcap-2.69-1.fc40.i686.rpm           3.8 MB/s |  84 kB     00:00    
(68/152): libcap-ng-0.8.3-8.fc40.i686.rpm       1.5 MB/s |  33 kB     00:00    
(69/152): libcom_err-1.47.0-2.fc39.i686.rpm     1.3 MB/s |  26 kB     00:00    
(70/152): libeconf-0.5.2-1.fc40.i686.rpm        1.6 MB/s |  32 kB     00:00    
(71/152): libcurl-8.5.0-1.fc40.i686.rpm          15 MB/s | 372 kB     00:00    
(72/152): libevent-2.1.12-9.fc39.i686.rpm        12 MB/s | 277 kB     00:00    
(73/152): libfdisk-2.39.2-1.fc40.i686.rpm       9.6 MB/s | 175 kB     00:00    
(74/152): libffi-3.4.4-4.fc39.i686.rpm          2.1 MB/s |  38 kB     00:00    
(75/152): libgcc-13.2.1-6.fc40.i686.rpm         5.9 MB/s | 121 kB     00:00    
(76/152): libgomp-13.2.1-6.fc40.i686.rpm         14 MB/s | 324 kB     00:00    
(77/152): libidn2-2.3.4-3.fc39.i686.rpm         4.7 MB/s | 111 kB     00:00    
(78/152): libmount-2.39.2-1.fc40.i686.rpm       8.2 MB/s | 161 kB     00:00    
(79/152): libnghttp2-1.58.0-1.fc40.i686.rpm     4.5 MB/s |  82 kB     00:00    
(80/152): libnsl2-2.0.0-6.fc39.i686.rpm         1.7 MB/s |  31 kB     00:00    
(81/152): libpkgconf-1.9.5-2.fc39.i686.rpm      1.9 MB/s |  41 kB     00:00    
(82/152): libpsl-0.21.2-4.fc39.i686.rpm         3.1 MB/s |  63 kB     00:00    
(83/152): libpwquality-1.4.5-6.fc39.i686.rpm    5.3 MB/s | 109 kB     00:00    
(84/152): libselinux-3.6-0.rc2.1.fc40.i686.rpm  6.5 MB/s |  93 kB     00:00    
(85/152): libsemanage-3.6-0.rc2.1.fc40.i686.rpm 8.2 MB/s | 125 kB     00:00    
(86/152): libsepol-3.6-0.rc2.1.fc40.i686.rpm     19 MB/s | 352 kB     00:00    
(87/152): libsigsegv-2.14-5.fc39.i686.rpm       1.8 MB/s |  27 kB     00:00    
(88/152): libsmartcols-2.39.2-1.fc40.i686.rpm   4.3 MB/s |  69 kB     00:00    
(89/152): libssh-0.10.5-2.fc39.i686.rpm          13 MB/s | 226 kB     00:00    
(90/152): libssh-config-0.10.5-2.fc39.noarch.rp 780 kB/s | 9.2 kB     00:00    
(91/152): libtasn1-4.19.0-3.fc39.i686.rpm       3.9 MB/s |  75 kB     00:00    
(92/152): libstdc++-13.2.1-6.fc40.i686.rpm       32 MB/s | 931 kB     00:00    
(93/152): libtirpc-1.3.4-0.fc40.i686.rpm        5.1 MB/s | 101 kB     00:00    
(94/152): libunistring-1.1-5.fc40.i686.rpm       26 MB/s | 551 kB     00:00    
(95/152): libutempter-1.2.1-10.fc39.i686.rpm    1.4 MB/s |  27 kB     00:00    
(96/152): libuuid-2.39.2-1.fc40.i686.rpm        1.5 MB/s |  29 kB     00:00    
(97/152): libverto-0.3.2-6.fc39.i686.rpm        1.6 MB/s |  21 kB     00:00    
(98/152): libxcrypt-4.4.36-2.fc39.i686.rpm      9.1 MB/s | 123 kB     00:00    
(99/152): libxml2-2.12.3-1.fc40.i686.rpm         33 MB/s | 729 kB     00:00    
(100/152): libzstd-1.5.5-4.fc39.i686.rpm         12 MB/s | 290 kB     00:00    
(101/152): lua-libs-5.4.6-3.fc39.i686.rpm       6.0 MB/s | 149 kB     00:00    
(102/152): lua-srpm-macros-1-9.fc39.noarch.rpm  459 kB/s | 8.6 kB     00:00    
(103/152): lz4-libs-1.9.4-4.fc39.i686.rpm       4.4 MB/s |  70 kB     00:00    
(104/152): mpfr-4.2.1-1.fc40.i686.rpm            19 MB/s | 380 kB     00:00    
(105/152): ncurses-base-6.4-8.20231001.fc40.noa 3.6 MB/s |  63 kB     00:00    
(106/152): ncurses-libs-6.4-8.20231001.fc40.i68  17 MB/s | 359 kB     00:00    
(107/152): ocaml-srpm-macros-9-1.fc40.noarch.rp 523 kB/s | 9.0 kB     00:00    
(108/152): openblas-srpm-macros-2-14.fc39.noarc 438 kB/s | 7.5 kB     00:00    
(109/152): openldap-2.6.6-1.fc39.i686.rpm        15 MB/s | 273 kB     00:00    
(110/152): p11-kit-0.25.3-1.fc40.i686.rpm        20 MB/s | 490 kB     00:00    
(111/152): p11-kit-trust-0.25.3-1.fc40.i686.rpm 5.1 MB/s | 140 kB     00:00    
(112/152): package-notes-srpm-macros-0.5-9.fc39 401 kB/s |  11 kB     00:00    
(113/152): openssl-libs-3.1.4-1.fc40.i686.rpm    30 MB/s | 2.1 MB     00:00    
(114/152): pam-1.5.3-8.fc40.i686.rpm             15 MB/s | 528 kB     00:00    
(115/152): pam-libs-1.5.3-8.fc40.i686.rpm       2.2 MB/s |  60 kB     00:00    
(116/152): patch-2.7.6-22.fc39.i686.rpm         5.8 MB/s | 138 kB     00:00    
(117/152): pcre2-syntax-10.42-2.fc40.noarch.rpm 6.4 MB/s | 143 kB     00:00    
(118/152): pcre2-10.42-2.fc40.i686.rpm          8.7 MB/s | 231 kB     00:00    
(119/152): perl-srpm-macros-1-51.fc39.noarch.rp 423 kB/s | 8.0 kB     00:00    
(120/152): pkgconf-1.9.5-2.fc39.i686.rpm        2.4 MB/s |  43 kB     00:00    
(121/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm   929 kB/s |  14 kB     00:00    
(122/152): pkgconf-pkg-config-1.9.5-2.fc39.i686 664 kB/s | 9.6 kB     00:00    
(123/152): popt-1.19-3.fc39.i686.rpm            4.6 MB/s |  62 kB     00:00    
(124/152): publicsuffix-list-dafsa-20230812-1.f 4.6 MB/s |  57 kB     00:00    
(125/152): pyproject-srpm-macros-1.10.0-1.fc40. 1.2 MB/s |  14 kB     00:00    
(126/152): python-srpm-macros-3.12-5.fc40.noarc 2.2 MB/s |  25 kB     00:00    
(127/152): qt5-srpm-macros-5.15.11-1.fc40.noarc 761 kB/s | 8.3 kB     00:00    
(128/152): qt6-srpm-macros-6.6.1-1.fc40.noarch. 823 kB/s | 8.6 kB     00:00    
(129/152): redhat-rpm-config-271-1.fc40.noarch. 6.5 MB/s |  74 kB     00:00    
(130/152): readline-8.2-4.fc39.i686.rpm          15 MB/s | 218 kB     00:00    
(131/152): rpm-4.19.1-1.fc40.i686.rpm            26 MB/s | 507 kB     00:00    
(132/152): rpm-build-4.19.1-1.fc40.i686.rpm     3.8 MB/s |  72 kB     00:00    
(133/152): rpm-build-libs-4.19.1-1.fc40.i686.rp 5.4 MB/s | 102 kB     00:00    
(134/152): rpm-libs-4.19.1-1.fc40.i686.rpm       16 MB/s | 341 kB     00:00    
(135/152): rust-srpm-macros-25.2-2.fc40.noarch. 801 kB/s |  13 kB     00:00    
(136/152): sed-4.8-14.fc39.i686.rpm              12 MB/s | 300 kB     00:00    
(137/152): setup-2.14.5-1.fc40.noarch.rpm       6.0 MB/s | 148 kB     00:00    
(138/152): rpm-sequoia-1.5.0-2.fc40.i686.rpm     16 MB/s | 945 kB     00:00    
(139/152): shadow-utils-4.14.0-2.fc40.i686.rpm   24 MB/s | 1.2 MB     00:00    
(140/152): sqlite-libs-3.44.2-1.fc40.i686.rpm    13 MB/s | 733 kB     00:00    
(141/152): systemd-libs-255-1.fc40.i686.rpm      12 MB/s | 743 kB     00:00    
(142/152): tar-1.35-2.fc40.i686.rpm              23 MB/s | 864 kB     00:00    
(143/152): unzip-6.0-62.fc39.i686.rpm           5.3 MB/s | 180 kB     00:00    
(144/152): util-linux-core-2.39.2-1.fc40.i686.r  13 MB/s | 491 kB     00:00    
(145/152): which-2.21-40.fc39.i686.rpm          1.1 MB/s |  42 kB     00:00    
(146/152): util-linux-2.39.2-1.fc40.i686.rpm     18 MB/s | 1.2 MB     00:00    
(147/152): xxhash-libs-0.8.2-1.fc39.i686.rpm    1.7 MB/s |  49 kB     00:00    
(148/152): xz-5.4.5-1.fc40.i686.rpm              15 MB/s | 535 kB     00:00    
(149/152): xz-libs-5.4.5-1.fc40.i686.rpm        3.8 MB/s | 118 kB     00:00    
(150/152): zip-3.0-39.fc40.i686.rpm             8.3 MB/s | 267 kB     00:00    
(151/152): zlib-1.2.13-5.fc40.i686.rpm          3.3 MB/s |  93 kB     00:00    
(152/152): zstd-1.5.5-4.fc39.i686.rpm            14 MB/s | 451 kB     00:00    
--------------------------------------------------------------------------------
Total                                            34 MB/s |  53 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.i686                            1/1 
  Preparing        :                                                        1/1 
  Installing       : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc     1/152 
  Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc     1/152 
  Installing       : fedora-release-identity-basic-40-0.20.noarch         2/152 
  Installing       : fedora-repos-rawhide-40-0.2.noarch                   3/152 
  Installing       : fedora-gpg-keys-40-0.2.noarch                        4/152 
  Installing       : fedora-repos-40-0.2.noarch                           5/152 
  Installing       : fedora-release-common-40-0.20.noarch                 6/152 
  Installing       : fedora-release-40-0.20.noarch                        7/152 
  Installing       : setup-2.14.5-1.fc40.noarch                           8/152 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.5-1.fc40.noarch                           8/152 
  Installing       : filesystem-3.18-6.fc39.i686                          9/152 
  Installing       : basesystem-11-18.fc39.noarch                        10/152 
  Installing       : rust-srpm-macros-25.2-2.fc40.noarch                 11/152 
  Installing       : qt6-srpm-macros-6.6.1-1.fc40.noarch                 12/152 
  Installing       : qt5-srpm-macros-5.15.11-1.fc40.noarch               13/152 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      14/152 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      15/152 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   16/152 
  Installing       : pcre2-syntax-10.42-2.fc40.noarch                    17/152 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         18/152 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               19/152 
  Installing       : ocaml-srpm-macros-9-1.fc40.noarch                   20/152 
  Installing       : ncurses-base-6.4-8.20231001.fc40.noarch             21/152 
  Installing       : libssh-config-0.10.5-2.fc39.noarch                  22/152 
  Installing       : kernel-srpm-macros-1.0-20.fc39.noarch               23/152 
  Installing       : gnat-srpm-macros-6-3.fc39.noarch                    24/152 
  Installing       : ghc-srpm-macros-1.6.1-3.fc40.noarch                 25/152 
  Installing       : fpc-srpm-macros-1.3-8.fc39.noarch                   26/152 
  Installing       : coreutils-common-9.4-1.fc40.i686                    27/152 
  Installing       : ansible-srpm-macros-1-11.fc39.noarch                28/152 
  Installing       : libgcc-13.2.1-6.fc40.i686                           29/152 
  Running scriptlet: libgcc-13.2.1-6.fc40.i686                           29/152 
  Installing       : glibc-gconv-extra-2.38.9000-26.fc40.i686            30/152 
  Running scriptlet: glibc-gconv-extra-2.38.9000-26.fc40.i686            30/152 
  Installing       : glibc-minimal-langpack-2.38.9000-26.fc40.i686       31/152 
  Installing       : glibc-common-2.38.9000-26.fc40.i686                 32/152 
  Running scriptlet: glibc-2.38.9000-26.fc40.i686                        33/152 
  Installing       : glibc-2.38.9000-26.fc40.i686                        33/152 
  Running scriptlet: glibc-2.38.9000-26.fc40.i686                        33/152 
  Installing       : ncurses-libs-6.4-8.20231001.fc40.i686               34/152 
  Installing       : bash-5.2.21-2.fc40.i686                             35/152 
  Running scriptlet: bash-5.2.21-2.fc40.i686                             35/152 
  Installing       : zlib-1.2.13-5.fc40.i686                             36/152 
  Installing       : xz-libs-5.4.5-1.fc40.i686                           37/152 
  Installing       : bzip2-libs-1.0.8-16.fc39.i686                       38/152 
  Installing       : readline-8.2-4.fc39.i686                            39/152 
  Installing       : libstdc++-13.2.1-6.fc40.i686                        40/152 
  Installing       : libuuid-2.39.2-1.fc40.i686                          41/152 
  Installing       : libzstd-1.5.5-4.fc39.i686                           42/152 
  Installing       : elfutils-libelf-0.190-4.fc40.i686                   43/152 
  Installing       : popt-1.19-3.fc39.i686                               44/152 
  Installing       : libblkid-2.39.2-1.fc40.i686                         45/152 
  Installing       : gmp-1:6.2.1-5.fc39.i686                             46/152 
  Installing       : libattr-2.5.1-9.fc40.i686                           47/152 
  Installing       : libacl-2.3.1-11.fc40.i686                           48/152 
  Installing       : libxcrypt-4.4.36-2.fc39.i686                        49/152 
  Installing       : gdbm-libs-1:1.23-4.fc39.i686                        50/152 
  Installing       : libeconf-0.5.2-1.fc40.i686                          51/152 
  Installing       : lz4-libs-1.9.4-4.fc39.i686                          52/152 
  Installing       : mpfr-4.2.1-1.fc40.i686                              53/152 
  Installing       : dwz-0.15-3.fc39.i686                                54/152 
  Installing       : unzip-6.0-62.fc39.i686                              55/152 
  Installing       : file-libs-5.45-1.fc40.i686                          56/152 
  Installing       : file-5.45-1.fc40.i686                               57/152 
  Installing       : alternatives-1.25-1.fc39.i686                       58/152 
  Installing       : jansson-2.13.1-7.fc39.i686                          59/152 
  Installing       : libcap-ng-0.8.3-8.fc40.i686                         60/152 
  Installing       : audit-libs-3.1.2-5.fc40.i686                        61/152 
  Installing       : pam-libs-1.5.3-8.fc40.i686                          62/152 
  Installing       : libcap-2.69-1.fc40.i686                             63/152 
  Installing       : systemd-libs-255-1.fc40.i686                        64/152 
  Installing       : libcom_err-1.47.0-2.fc39.i686                       65/152 
  Installing       : libsepol-3.6-0.rc2.1.fc40.i686                      66/152 
  Installing       : libsmartcols-2.39.2-1.fc40.i686                     67/152 
  Installing       : libtasn1-4.19.0-3.fc39.i686                         68/152 
  Installing       : libunistring-1.1-5.fc40.i686                        69/152 
  Installing       : libidn2-2.3.4-3.fc39.i686                           70/152 
  Installing       : lua-libs-5.4.6-3.fc39.i686                          71/152 
  Installing       : pcre2-10.42-2.fc40.i686                             72/152 
  Installing       : elfutils-default-yama-scope-0.190-4.fc40.noarch     73/152 
  Running scriptlet: elfutils-default-yama-scope-0.190-4.fc40.noarch     73/152 
  Installing       : libselinux-3.6-0.rc2.1.fc40.i686                    74/152 
  Installing       : sed-4.8-14.fc39.i686                                75/152 
  Installing       : grep-3.11-5.fc40.i686                               76/152 
  Installing       : findutils-1:4.9.0-6.fc40.i686                       77/152 
  Installing       : xz-5.4.5-1.fc40.i686                                78/152 
  Installing       : libmount-2.39.2-1.fc40.i686                         79/152 
  Installing       : util-linux-core-2.39.2-1.fc40.i686                  80/152 
  Installing       : libsemanage-3.6-0.rc2.1.fc40.i686                   81/152 
  Installing       : shadow-utils-2:4.14.0-2.fc40.i686                   82/152 
  Running scriptlet: libutempter-1.2.1-10.fc39.i686                      83/152 
  Installing       : libutempter-1.2.1-10.fc39.i686                      83/152 
  Installing       : tar-2:1.35-2.fc40.i686                              84/152 
  Installing       : libpsl-0.21.2-4.fc39.i686                           85/152 
  Installing       : zip-3.0-39.fc40.i686                                86/152 
  Installing       : zstd-1.5.5-4.fc39.i686                              87/152 
  Installing       : cyrus-sasl-lib-2.1.28-11.fc39.i686                  88/152 
  Installing       : gdbm-1:1.23-4.fc39.i686                             89/152 
  Installing       : libfdisk-2.39.2-1.fc40.i686                         90/152 
  Installing       : bzip2-1.0.8-16.fc39.i686                            91/152 
  Installing       : libxml2-2.12.3-1.fc40.i686                          92/152 
  Installing       : sqlite-libs-3.44.2-1.fc40.i686                      93/152 
  Installing       : ed-1.19-4.fc39.i686                                 94/152 
  Installing       : patch-2.7.6-22.fc39.i686                            95/152 
  Installing       : cpio-2.14-5.fc40.i686                               96/152 
  Installing       : diffutils-3.10-3.fc39.i686                          97/152 
  Installing       : keyutils-libs-1.6.1-7.fc39.i686                     98/152 
  Installing       : libbrotli-1.1.0-1.fc40.i686                         99/152 
  Installing       : libffi-3.4.4-4.fc39.i686                           100/152 
  Installing       : p11-kit-0.25.3-1.fc40.i686                         101/152 
  Installing       : p11-kit-trust-0.25.3-1.fc40.i686                   102/152 
  Running scriptlet: p11-kit-trust-0.25.3-1.fc40.i686                   102/152 
  Installing       : openssl-libs-1:3.1.4-1.fc40.i686                   103/152 
  Installing       : coreutils-9.4-1.fc40.i686                          104/152 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   105/152 
  Installing       : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   105/152 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   105/152 
  Running scriptlet: authselect-libs-1.4.3-1.fc40.i686                  106/152 
  Installing       : authselect-libs-1.4.3-1.fc40.i686                  106/152 
  Installing       : gzip-1.12-6.fc39.i686                              107/152 
  Installing       : cracklib-2.9.11-2.fc39.i686                        108/152 
  Installing       : libpwquality-1.4.5-6.fc39.i686                     109/152 
  Installing       : authselect-1.4.3-1.fc40.i686                       110/152 
  Installing       : libarchive-3.7.2-1.fc40.i686                       111/152 
  Installing       : libevent-2.1.12-9.fc39.i686                        112/152 
  Installing       : openldap-2.6.6-1.fc39.i686                         113/152 
  Installing       : rpm-sequoia-1.5.0-2.fc40.i686                      114/152 
  Installing       : rpm-libs-4.19.1-1.fc40.i686                        115/152 
  Installing       : libgomp-13.2.1-6.fc40.i686                         116/152 
  Installing       : libnghttp2-1.58.0-1.fc40.i686                      117/152 
  Installing       : libpkgconf-1.9.5-2.fc39.i686                       118/152 
  Installing       : pkgconf-1.9.5-2.fc39.i686                          119/152 
  Installing       : pkgconf-pkg-config-1.9.5-2.fc39.i686               120/152 
  Installing       : libsigsegv-2.14-5.fc39.i686                        121/152 
  Installing       : gawk-5.2.2-2.fc39.i686                             122/152 
  Installing       : libverto-0.3.2-6.fc39.i686                         123/152 
  Installing       : krb5-libs-1.21.2-2.fc40.i686                       124/152 
  Installing       : libtirpc-1.3.4-0.fc40.i686                         125/152 
  Installing       : libnsl2-2.0.0-6.fc39.i686                          126/152 
  Installing       : pam-1.5.3-8.fc40.i686                              127/152 
  Installing       : libssh-0.10.5-2.fc39.i686                          128/152 
  Installing       : libcurl-8.5.0-1.fc40.i686                          129/152 
  Installing       : elfutils-libs-0.190-4.fc40.i686                    130/152 
  Installing       : elfutils-debuginfod-client-0.190-4.fc40.i686       131/152 
  Installing       : binutils-gold-2.41-16.fc40.i686                    132/152 
  Running scriptlet: binutils-gold-2.41-16.fc40.i686                    132/152 
  Installing       : binutils-2.41-16.fc40.i686                         133/152 
  Running scriptlet: binutils-2.41-16.fc40.i686                         133/152 
  Installing       : elfutils-0.190-4.fc40.i686                         134/152 
  Installing       : rpm-build-libs-4.19.1-1.fc40.i686                  135/152 
  Installing       : curl-8.5.0-1.fc40.i686                             136/152 
  Running scriptlet: rpm-4.19.1-1.fc40.i686                             137/152 
  Installing       : rpm-4.19.1-1.fc40.i686                             137/152 
  Installing       : efi-srpm-macros-5-9.fc39.noarch                    138/152 
  Installing       : lua-srpm-macros-1-9.fc39.noarch                    139/152 
  Installing       : xxhash-libs-0.8.2-1.fc39.i686                      140/152 
  Installing       : gdb-minimal-14.1-1.fc40.i686                       141/152 
  Installing       : debugedit-5.0-12.fc40.i686                         142/152 
  Installing       : fonts-srpm-macros-1:2.0.5-12.fc39.noarch           143/152 
  Installing       : forge-srpm-macros-0.2.0-1.fc40.noarch              144/152 
  Installing       : go-srpm-macros-3.3.1-1.fc40.noarch                 145/152 
  Installing       : python-srpm-macros-3.12-5.fc40.noarch              146/152 
  Installing       : redhat-rpm-config-271-1.fc40.noarch                147/152 
  Installing       : rpm-build-4.19.1-1.fc40.i686                       148/152 
  Installing       : pyproject-srpm-macros-1.10.0-1.fc40.noarch         149/152 
  Installing       : util-linux-2.39.2-1.fc40.i686                      150/152 
  Installing       : which-2.21-40.fc39.i686                            151/152 
  Installing       : info-7.1-1.fc40.i686                               152/152 
  Running scriptlet: filesystem-3.18-6.fc39.i686                        152/152 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   152/152 
  Running scriptlet: authselect-libs-1.4.3-1.fc40.i686                  152/152 
  Running scriptlet: rpm-4.19.1-1.fc40.i686                             152/152 
  Running scriptlet: info-7.1-1.fc40.i686                               152/152 

Installed:
  alternatives-1.25-1.fc39.i686                                                 
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-5.fc40.i686                                                  
  authselect-1.4.3-1.fc40.i686                                                  
  authselect-libs-1.4.3-1.fc40.i686                                             
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.21-2.fc40.i686                                                       
  binutils-2.41-16.fc40.i686                                                    
  binutils-gold-2.41-16.fc40.i686                                               
  bzip2-1.0.8-16.fc39.i686                                                      
  bzip2-libs-1.0.8-16.fc39.i686                                                 
  ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch                              
  coreutils-9.4-1.fc40.i686                                                     
  coreutils-common-9.4-1.fc40.i686                                              
  cpio-2.14-5.fc40.i686                                                         
  cracklib-2.9.11-2.fc39.i686                                                   
  crypto-policies-20231204-1.git1e3a2e4.fc40.noarch                             
  curl-8.5.0-1.fc40.i686                                                        
  cyrus-sasl-lib-2.1.28-11.fc39.i686                                            
  debugedit-5.0-12.fc40.i686                                                    
  diffutils-3.10-3.fc39.i686                                                    
  dwz-0.15-3.fc39.i686                                                          
  ed-1.19-4.fc39.i686                                                           
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.190-4.fc40.i686                                                    
  elfutils-debuginfod-client-0.190-4.fc40.i686                                  
  elfutils-default-yama-scope-0.190-4.fc40.noarch                               
  elfutils-libelf-0.190-4.fc40.i686                                             
  elfutils-libs-0.190-4.fc40.i686                                               
  fedora-gpg-keys-40-0.2.noarch                                                 
  fedora-release-40-0.20.noarch                                                 
  fedora-release-common-40-0.20.noarch                                          
  fedora-release-identity-basic-40-0.20.noarch                                  
  fedora-repos-40-0.2.noarch                                                    
  fedora-repos-rawhide-40-0.2.noarch                                            
  file-5.45-1.fc40.i686                                                         
  file-libs-5.45-1.fc40.i686                                                    
  filesystem-3.18-6.fc39.i686                                                   
  findutils-1:4.9.0-6.fc40.i686                                                 
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.2.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.i686                                                        
  gdb-minimal-14.1-1.fc40.i686                                                  
  gdbm-1:1.23-4.fc39.i686                                                       
  gdbm-libs-1:1.23-4.fc39.i686                                                  
  ghc-srpm-macros-1.6.1-3.fc40.noarch                                           
  glibc-2.38.9000-26.fc40.i686                                                  
  glibc-common-2.38.9000-26.fc40.i686                                           
  glibc-gconv-extra-2.38.9000-26.fc40.i686                                      
  glibc-minimal-langpack-2.38.9000-26.fc40.i686                                 
  gmp-1:6.2.1-5.fc39.i686                                                       
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.3.1-1.fc40.noarch                                            
  grep-3.11-5.fc40.i686                                                         
  gzip-1.12-6.fc39.i686                                                         
  info-7.1-1.fc40.i686                                                          
  jansson-2.13.1-7.fc39.i686                                                    
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.i686                                               
  krb5-libs-1.21.2-2.fc40.i686                                                  
  libacl-2.3.1-11.fc40.i686                                                     
  libarchive-3.7.2-1.fc40.i686                                                  
  libattr-2.5.1-9.fc40.i686                                                     
  libblkid-2.39.2-1.fc40.i686                                                   
  libbrotli-1.1.0-1.fc40.i686                                                   
  libcap-2.69-1.fc40.i686                                                       
  libcap-ng-0.8.3-8.fc40.i686                                                   
  libcom_err-1.47.0-2.fc39.i686                                                 
  libcurl-8.5.0-1.fc40.i686                                                     
  libeconf-0.5.2-1.fc40.i686                                                    
  libevent-2.1.12-9.fc39.i686                                                   
  libfdisk-2.39.2-1.fc40.i686                                                   
  libffi-3.4.4-4.fc39.i686                                                      
  libgcc-13.2.1-6.fc40.i686                                                     
  libgomp-13.2.1-6.fc40.i686                                                    
  libidn2-2.3.4-3.fc39.i686                                                     
  libmount-2.39.2-1.fc40.i686                                                   
  libnghttp2-1.58.0-1.fc40.i686                                                 
  libnsl2-2.0.0-6.fc39.i686                                                     
  libpkgconf-1.9.5-2.fc39.i686                                                  
  libpsl-0.21.2-4.fc39.i686                                                     
  libpwquality-1.4.5-6.fc39.i686                                                
  libselinux-3.6-0.rc2.1.fc40.i686                                              
  libsemanage-3.6-0.rc2.1.fc40.i686                                             
  libsepol-3.6-0.rc2.1.fc40.i686                                                
  libsigsegv-2.14-5.fc39.i686                                                   
  libsmartcols-2.39.2-1.fc40.i686                                               
  libssh-0.10.5-2.fc39.i686                                                     
  libssh-config-0.10.5-2.fc39.noarch                                            
  libstdc++-13.2.1-6.fc40.i686                                                  
  libtasn1-4.19.0-3.fc39.i686                                                   
  libtirpc-1.3.4-0.fc40.i686                                                    
  libunistring-1.1-5.fc40.i686                                                  
  libutempter-1.2.1-10.fc39.i686                                                
  libuuid-2.39.2-1.fc40.i686                                                    
  libverto-0.3.2-6.fc39.i686                                                    
  libxcrypt-4.4.36-2.fc39.i686                                                  
  libxml2-2.12.3-1.fc40.i686                                                    
  libzstd-1.5.5-4.fc39.i686                                                     
  lua-libs-5.4.6-3.fc39.i686                                                    
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.i686                                                    
  mpfr-4.2.1-1.fc40.i686                                                        
  ncurses-base-6.4-8.20231001.fc40.noarch                                       
  ncurses-libs-6.4-8.20231001.fc40.i686                                         
  ocaml-srpm-macros-9-1.fc40.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.i686                                                    
  openssl-libs-1:3.1.4-1.fc40.i686                                              
  p11-kit-0.25.3-1.fc40.i686                                                    
  p11-kit-trust-0.25.3-1.fc40.i686                                              
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-8.fc40.i686                                                         
  pam-libs-1.5.3-8.fc40.i686                                                    
  patch-2.7.6-22.fc39.i686                                                      
  pcre2-10.42-2.fc40.i686                                                       
  pcre2-syntax-10.42-2.fc40.noarch                                              
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.i686                                                     
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.i686                                          
  popt-1.19-3.fc39.i686                                                         
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.10.0-1.fc40.noarch                                    
  python-srpm-macros-3.12-5.fc40.noarch                                         
  qt5-srpm-macros-5.15.11-1.fc40.noarch                                         
  qt6-srpm-macros-6.6.1-1.fc40.noarch                                           
  readline-8.2-4.fc39.i686                                                      
  redhat-rpm-config-271-1.fc40.noarch                                           
  rpm-4.19.1-1.fc40.i686                                                        
  rpm-build-4.19.1-1.fc40.i686                                                  
  rpm-build-libs-4.19.1-1.fc40.i686                                             
  rpm-libs-4.19.1-1.fc40.i686                                                   
  rpm-sequoia-1.5.0-2.fc40.i686                                                 
  rust-srpm-macros-25.2-2.fc40.noarch                                           
  sed-4.8-14.fc39.i686                                                          
  setup-2.14.5-1.fc40.noarch                                                    
  shadow-utils-2:4.14.0-2.fc40.i686                                             
  sqlite-libs-3.44.2-1.fc40.i686                                                
  systemd-libs-255-1.fc40.i686                                                  
  tar-2:1.35-2.fc40.i686                                                        
  unzip-6.0-62.fc39.i686                                                        
  util-linux-2.39.2-1.fc40.i686                                                 
  util-linux-core-2.39.2-1.fc40.i686                                            
  which-2.21-40.fc39.i686                                                       
  xxhash-libs-0.8.2-1.fc39.i686                                                 
  xz-5.4.5-1.fc40.i686                                                          
  xz-libs-5.4.5-1.fc40.i686                                                     
  zip-3.0-39.fc40.i686                                                          
  zlib-1.2.13-5.fc40.i686                                                       
  zstd-1.5.5-4.fc39.i686                                                        

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.i686
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-5.fc40.i686
authselect-1.4.3-1.fc40.i686
authselect-libs-1.4.3-1.fc40.i686
basesystem-11-18.fc39.noarch
bash-5.2.21-2.fc40.i686
binutils-2.41-16.fc40.i686
binutils-gold-2.41-16.fc40.i686
bzip2-1.0.8-16.fc39.i686
bzip2-libs-1.0.8-16.fc39.i686
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-1.fc40.i686
coreutils-common-9.4-1.fc40.i686
cpio-2.14-5.fc40.i686
cracklib-2.9.11-2.fc39.i686
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-1.fc40.i686
cyrus-sasl-lib-2.1.28-11.fc39.i686
debugedit-5.0-12.fc40.i686
diffutils-3.10-3.fc39.i686
dwz-0.15-3.fc39.i686
ed-1.19-4.fc39.i686
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.i686
elfutils-debuginfod-client-0.190-4.fc40.i686
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.i686
elfutils-libs-0.190-4.fc40.i686
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.20.noarch
fedora-release-common-40-0.20.noarch
fedora-release-identity-basic-40-0.20.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-1.fc40.i686
file-libs-5.45-1.fc40.i686
filesystem-3.18-6.fc39.i686
findutils-4.9.0-6.fc40.i686
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.i686
gdb-minimal-14.1-1.fc40.i686
gdbm-1.23-4.fc39.i686
gdbm-libs-1.23-4.fc39.i686
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-26.fc40.i686
glibc-common-2.38.9000-26.fc40.i686
glibc-gconv-extra-2.38.9000-26.fc40.i686
glibc-minimal-langpack-2.38.9000-26.fc40.i686
gmp-6.2.1-5.fc39.i686
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
grep-3.11-5.fc40.i686
gzip-1.12-6.fc39.i686
info-7.1-1.fc40.i686
jansson-2.13.1-7.fc39.i686
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.i686
krb5-libs-1.21.2-2.fc40.i686
libacl-2.3.1-11.fc40.i686
libarchive-3.7.2-1.fc40.i686
libattr-2.5.1-9.fc40.i686
libblkid-2.39.2-1.fc40.i686
libbrotli-1.1.0-1.fc40.i686
libcap-2.69-1.fc40.i686
libcap-ng-0.8.3-8.fc40.i686
libcom_err-1.47.0-2.fc39.i686
libcurl-8.5.0-1.fc40.i686
libeconf-0.5.2-1.fc40.i686
libevent-2.1.12-9.fc39.i686
libfdisk-2.39.2-1.fc40.i686
libffi-3.4.4-4.fc39.i686
libgcc-13.2.1-6.fc40.i686
libgomp-13.2.1-6.fc40.i686
libidn2-2.3.4-3.fc39.i686
libmount-2.39.2-1.fc40.i686
libnghttp2-1.58.0-1.fc40.i686
libnsl2-2.0.0-6.fc39.i686
libpkgconf-1.9.5-2.fc39.i686
libpsl-0.21.2-4.fc39.i686
libpwquality-1.4.5-6.fc39.i686
libselinux-3.6-0.rc2.1.fc40.i686
libsemanage-3.6-0.rc2.1.fc40.i686
libsepol-3.6-0.rc2.1.fc40.i686
libsigsegv-2.14-5.fc39.i686
libsmartcols-2.39.2-1.fc40.i686
libssh-0.10.5-2.fc39.i686
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-6.fc40.i686
libtasn1-4.19.0-3.fc39.i686
libtirpc-1.3.4-0.fc40.i686
libunistring-1.1-5.fc40.i686
libutempter-1.2.1-10.fc39.i686
libuuid-2.39.2-1.fc40.i686
libverto-0.3.2-6.fc39.i686
libxcrypt-4.4.36-2.fc39.i686
libxml2-2.12.3-1.fc40.i686
libzstd-1.5.5-4.fc39.i686
lua-libs-5.4.6-3.fc39.i686
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.i686
mpfr-4.2.1-1.fc40.i686
ncurses-base-6.4-8.20231001.fc40.noarch
ncurses-libs-6.4-8.20231001.fc40.i686
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.i686
openssl-libs-3.1.4-1.fc40.i686
p11-kit-0.25.3-1.fc40.i686
p11-kit-trust-0.25.3-1.fc40.i686
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-8.fc40.i686
pam-libs-1.5.3-8.fc40.i686
patch-2.7.6-22.fc39.i686
pcre2-10.42-2.fc40.i686
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.i686
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.i686
popt-1.19-3.fc39.i686
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.10.0-1.fc40.noarch
python-srpm-macros-3.12-5.fc40.noarch
qt5-srpm-macros-5.15.11-1.fc40.noarch
qt6-srpm-macros-6.6.1-1.fc40.noarch
readline-8.2-4.fc39.i686
redhat-rpm-config-271-1.fc40.noarch
rpm-4.19.1-1.fc40.i686
rpm-build-4.19.1-1.fc40.i686
rpm-build-libs-4.19.1-1.fc40.i686
rpm-libs-4.19.1-1.fc40.i686
rpm-sequoia-1.5.0-2.fc40.i686
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.i686
setup-2.14.5-1.fc40.noarch
shadow-utils-4.14.0-2.fc40.i686
sqlite-libs-3.44.2-1.fc40.i686
systemd-libs-255-1.fc40.i686
tar-1.35-2.fc40.i686
unzip-6.0-62.fc39.i686
util-linux-2.39.2-1.fc40.i686
util-linux-core-2.39.2-1.fc40.i686
which-2.21-40.fc39.i686
xxhash-libs-0.8.2-1.fc39.i686
xz-5.4.5-1.fc40.i686
xz-libs-5.4.5-1.fc40.i686
zip-3.0-39.fc40.i686
zlib-1.2.13-5.fc40.i686
zstd-1.5.5-4.fc39.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1699056000
Wrote: /builddir/build/SRPMS/avogadro2-libs-1.98.1-1.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1702407566.442991/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1702407566.442991/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1702407566.442991/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-muw_q9lq/avogadro2-libs/avogadro2-libs.spec) Config(child) 1 minutes 5 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.98.1-1.fc40.src.rpm)  Config(fedora-rawhide-i686)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1702407566.442991/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1702407566.442991/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1702407566.442991/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.0-3.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  python3-dnf-plugins-core-4.4.4-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
Start: build phase for avogadro2-libs-1.98.1-1.fc40.src.rpm
Start: build setup for avogadro2-libs-1.98.1-1.fc40.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1699056000
Wrote: /builddir/build/SRPMS/avogadro2-libs-1.98.1-1.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  13 kB/s | 1.5 kB     00:00    
local                                            94 kB/s | 3.8 kB     00:00    
Dependencies resolved.
===========================================================================================
 Package                                Arch    Version                    Repo        Size
===========================================================================================
Installing:
 boost-devel                            i686    1.83.0-0.fc40              copr_base   12 M
 chrpath                                i686    0.16-21.fc39               local       30 k
 cmake                                  i686    3.27.7-1.fc40              local       10 M
 doxygen                                i686    2:1.9.8-1.fc40             local      5.5 M
 eigen3-devel                           noarch  3.4.0-12.fc39              local      1.1 M
 gcc                                    i686    13.2.1-6.fc40              local       34 M
 gcc-c++                                i686    13.2.1-6.fc40              local       13 M
 glew-devel                             i686    2.2.0-5.fc39               local      217 k
 graphviz                               i686    9.0.0-3.fc40               local      5.1 M
 hdf5-devel                             i686    1.12.1-15.fc40             local      1.3 M
 jsoncpp-devel                          i686    1.9.5-5.fc39               local       29 k
 libarchive-devel                       i686    3.7.2-1.fc40               local      126 k
 make                                   i686    1:4.4.1-2.fc39             local      589 k
 mesa-libGLU-devel                      i686    9.0.3-1.fc39               local       12 k
 mmtf-cpp-devel                         i686    1.1.0-3.fc39               local       30 k
 openbabel-devel                        i686    3.1.1-21.fc39              local      191 k
 python3-devel                          i686    3.12.1-1.fc40              local      274 k
 qt5-qtbase-devel                       i686    5.15.11-7.fc40             local      3.3 M
 qt5-qtsvg-devel                        i686    5.15.11-1.fc40             local       26 k
 qt5-qttools-devel                      i686    5.15.11-1.fc40             local      190 k
 spglib-devel                           i686    2.0.2-3.fc39               local       14 k
Installing dependencies:
 abattis-cantarell-vf-fonts             noarch  0.301-10.fc39              local      121 k
 adobe-mappings-cmap                    noarch  20230622-1.fc39            local      2.1 M
 adobe-mappings-cmap-deprecated         noarch  20230622-1.fc39            local      113 k
 adobe-mappings-pdf                     noarch  20190401-5.fc39            local      689 k
 annobin-docs                           noarch  12.33-1.fc40               local       91 k
 annobin-plugin-gcc                     i686    12.33-1.fc40               local      959 k
 avahi-libs                             i686    0.8-24.fc39                local       73 k
 boost                                  i686    1.83.0-0.fc40              copr_base   14 k
 boost-atomic                           i686    1.83.0-0.fc40              copr_base   20 k
 boost-chrono                           i686    1.83.0-0.fc40              copr_base   28 k
 boost-container                        i686    1.83.0-0.fc40              copr_base   41 k
 boost-context                          i686    1.83.0-0.fc40              copr_base   17 k
 boost-contract                         i686    1.83.0-0.fc40              copr_base   49 k
 boost-coroutine                        i686    1.83.0-0.fc40              copr_base   21 k
 boost-date-time                        i686    1.83.0-0.fc40              copr_base   16 k
 boost-fiber                            i686    1.83.0-0.fc40              copr_base   45 k
 boost-filesystem                       i686    1.83.0-0.fc40              copr_base   73 k
 boost-graph                            i686    1.83.0-0.fc40              copr_base  159 k
 boost-iostreams                        i686    1.83.0-0.fc40              copr_base   45 k
 boost-json                             i686    1.83.0-0.fc40              copr_base  160 k
 boost-locale                           i686    1.83.0-0.fc40              copr_base  235 k
 boost-log                              i686    1.83.0-0.fc40              copr_base  532 k
 boost-math                             i686    1.83.0-0.fc40              copr_base  216 k
 boost-nowide                           i686    1.83.0-0.fc40              copr_base   22 k
 boost-numpy3                           i686    1.83.0-0.fc40              copr_base   31 k
 boost-program-options                  i686    1.83.0-0.fc40              copr_base  118 k
 boost-python3                          i686    1.83.0-0.fc40              copr_base  104 k
 boost-random                           i686    1.83.0-0.fc40              copr_base   25 k
 boost-regex                            i686    1.83.0-0.fc40              copr_base  116 k
 boost-serialization                    i686    1.83.0-0.fc40              copr_base  145 k
 boost-stacktrace                       i686    1.83.0-0.fc40              copr_base   32 k
 boost-system                           i686    1.83.0-0.fc40              copr_base   16 k
 boost-test                             i686    1.83.0-0.fc40              copr_base  257 k
 boost-thread                           i686    1.83.0-0.fc40              copr_base   66 k
 boost-timer                            i686    1.83.0-0.fc40              copr_base   23 k
 boost-type_erasure                     i686    1.83.0-0.fc40              copr_base   35 k
 boost-wave                             i686    1.83.0-0.fc40              copr_base  231 k
 cairo                                  i686    1.18.0-1.fc40              local      755 k
 cairo-gobject                          i686    1.18.0-1.fc40              local       17 k
 clang-libs                             i686    17.0.6-1.fc40              local       24 M
 clang-resource-filesystem              noarch  17.0.6-1.fc40              local       14 k
 cmake-data                             noarch  3.27.7-1.fc40              local      1.7 M
 cmake-filesystem                       i686    3.27.7-1.fc40              local       19 k
 cmake-rpm-macros                       noarch  3.27.7-1.fc40              local       19 k
 cpp                                    i686    13.2.1-6.fc40              local       11 M
 crypto-policies-scripts                noarch  20231204-1.git1e3a2e4.fc40 local      105 k
 cups-libs                              i686    1:2.4.7-4.fc40             local      284 k
 dbus-libs                              i686    1:1.14.10-1.fc40           local      167 k
 default-fonts-core-sans                noarch  4.0-9.fc40                 local       25 k
 double-conversion                      i686    3.1.5-9.fc39               local       52 k
 duktape                                i686    2.7.0-5.fc39               local      176 k
 emacs-filesystem                       noarch  1:29.1-14.fc40             local      7.4 k
 expat                                  i686    2.5.0-3.fc39               local      114 k
 flexiblas                              i686    3.3.1-5.fc39               local       33 k
 flexiblas-netlib                       i686    3.3.1-5.fc39               local      3.1 M
 flexiblas-openblas-openmp              i686    3.3.1-5.fc39               local       17 k
 fontconfig                             i686    2.14.2-5.fc40              local      293 k
 fonts-filesystem                       noarch  1:2.0.5-12.fc39            local      8.2 k
 freetype                               i686    2.13.1-2.fc39              local      419 k
 fribidi                                i686    1.0.13-2.fc39              local       92 k
 gc                                     i686    8.2.2-4.fc39               local      113 k
 gcc-gfortran                           i686    13.2.1-6.fc40              local       12 M
 gcc-plugin-annobin                     i686    13.2.1-6.fc40              local       50 k
 gd                                     i686    2.3.3-12.fc39              local      145 k
 gdk-pixbuf2                            i686    2.42.10-5.fc39             local      470 k
 gl-manpages                            noarch  1.1-29.20190306.fc40       local      1.0 M
 glib2                                  i686    2.78.3-1.fc40              local      2.9 M
 glibc-devel                            i686    2.38.9000-26.fc40          local       96 k
 glibc-headers-x86                      noarch  2.38.9000-26.fc40          local      510 k
 glx-utils                              i686    9.0.0-4.fc40               local       74 k
 gnutls                                 i686    3.8.2-2.fc40               local      1.1 M
 google-droid-sans-fonts                noarch  20200215-17.fc40           local      2.7 M
 google-noto-fonts-common               noarch  20230801-4.fc40            local       17 k
 google-noto-sans-vf-fonts              noarch  20230801-4.fc40            local      583 k
 graphite2                              i686    1.3.14-13.fc40             local       96 k
 groff-base                             i686    1.23.0-3.fc40              local      1.1 M
 gts                                    i686    0.7.6-46.20121130.fc39     local      246 k
 guile22                                i686    2.2.7-9.fc39               local      6.5 M
 harfbuzz                               i686    8.3.0-2.fc40               local      1.0 M
 hdf5                                   i686    1.12.1-15.fc40             local      2.1 M
 highway                                i686    1.0.7-1.fc40               local      302 k
 hwdata                                 noarch  0.377-2.fc40               local      1.6 M
 inchi-libs                             i686    1.0.6-7.fc39               local      664 k
 jbig2dec-libs                          i686    0.20-1.fc40                local       76 k
 jbigkit-libs                           i686    2.1-27.fc40                local       53 k
 jsoncpp                                i686    1.9.5-5.fc39               local      109 k
 kernel-headers                         i686    6.7.0-0.rc5.41.fc40        local      1.4 M
 lasi                                   i686    1.1.3-11.fc39              local       57 k
 lcms2                                  i686    2.15-2.fc39                local      193 k
 libGLEW                                i686    2.2.0-5.fc39               local      177 k
 libICE                                 i686    1.1.1-1.fc40               local       77 k
 libSM                                  i686    1.2.4-1.fc40               local       44 k
 libX11                                 i686    1.8.7-1.fc40               local      672 k
 libX11-common                          noarch  1.8.7-1.fc40               local      144 k
 libX11-devel                           i686    1.8.7-1.fc40               local      912 k
 libX11-xcb                             i686    1.8.7-1.fc40               local       12 k
 libXau                                 i686    1.0.11-4.fc40              local       32 k
 libXau-devel                           i686    1.0.11-4.fc40              local       13 k
 libXext                                i686    1.3.5-4.fc40               local       42 k
 libXfixes                              i686    6.0.1-1.fc40               local       20 k
 libXft                                 i686    2.3.8-4.fc40               local       73 k
 libXpm                                 i686    3.5.17-1.fc40              local       66 k
 libXrender                             i686    0.9.11-4.fc40              local       29 k
 libXt                                  i686    1.3.0-1.fc40               local      189 k
 libXxf86vm                             i686    1.1.5-4.fc40               local       19 k
 libaec                                 i686    1.0.6-5.fc39               local       44 k
 libaec-devel                           i686    1.0.6-5.fc39               local       12 k
 libaom                                 i686    3.7.1-1.fc40               local      1.3 M
 libasan                                i686    13.2.1-6.fc40              local      509 k
 libatomic                              i686    13.2.1-6.fc40              local       36 k
 libavif                                i686    0.11.1-11.fc39             local       88 k
 libb2                                  i686    0.98.1-9.fc39              local       28 k
 libdatrie                              i686    0.2.13-7.fc39              local       33 k
 libdav1d                               i686    1.2.1-2.fc39               local      385 k
 libdrm                                 i686    2.4.117-1.fc40             local      172 k
 libedit                                i686    3.1-48.20230828cvs.fc40    local      110 k
 libevdev                               i686    1.13.1-2.fc39              local       40 k
 libgfortran                            i686    13.2.1-6.fc40              local      843 k
 libglvnd                               i686    1:1.7.0-1.fc40             local      125 k
 libglvnd-core-devel                    i686    1:1.7.0-1.fc40             local       17 k
 libglvnd-devel                         i686    1:1.7.0-1.fc40             local      157 k
 libglvnd-egl                           i686    1:1.7.0-1.fc40             local       38 k
 libglvnd-gles                          i686    1:1.7.0-1.fc40             local       30 k
 libglvnd-glx                           i686    1:1.7.0-1.fc40             local      137 k
 libglvnd-opengl                        i686    1:1.7.0-1.fc40             local       39 k
 libgs                                  i686    10.02.1-4.fc40             local      3.5 M
 libgudev                               i686    238-2.fc39                 local       35 k
 libicu                                 i686    73.2-2.fc39                local       11 M
 libicu-devel                           i686    73.2-2.fc39                local      849 k
 libijs                                 i686    0.35-19.fc39               local       30 k
 libimagequant                          i686    4.0.3-2.fc40               local      343 k
 libinput                               i686    1.24.0-1.fc40              local      217 k
 libjpeg-turbo                          i686    2.1.4-3.fc39               local      198 k
 libjxl                                 i686    1:0.8.2-3.fc40             local      957 k
 liblerc                                i686    4.0.0-4.fc39               local      217 k
 libmpc                                 i686    1.3.1-3.fc39               local       77 k
 libpaper                               i686    1:2.1.1-1.fc39             local       27 k
 libpciaccess                           i686    0.16-9.fc39                local       29 k
 libpng                                 i686    2:1.6.40-1.fc40            local      127 k
 libproxy                               i686    0.5.3-3.fc40               local       50 k
 libquadmath                            i686    13.2.1-6.fc40              local      245 k
 libquadmath-devel                      i686    13.2.1-6.fc40              local       39 k
 librsvg2                               i686    2.57.0-3.fc40              local      1.7 M
 libstdc++-devel                        i686    13.2.1-6.fc40              local      2.5 M
 libthai                                i686    0.1.29-6.fc39              local      214 k
 libtiff                                i686    4.5.0-3.fc40               local      335 k
 libtool-ltdl                           i686    2.4.7-8.fc40               local       38 k
 libubsan                               i686    13.2.1-6.fc40              local      237 k
 libuv                                  i686    1:1.47.0-3.fc40            local      257 k
 libwacom                               i686    2.9.0-1.fc40               local       45 k
 libwacom-data                          noarch  2.9.0-1.fc40               local      118 k
 libwayland-client                      i686    1.22.0-2.fc39              local       33 k
 libwayland-server                      i686    1.22.0-2.fc39              local       44 k
 libwebp                                i686    1.3.2-2.fc40               local      295 k
 libxcb                                 i686    1.16-2.fc40                local      253 k
 libxcb-devel                           i686    1.16-2.fc40                local      1.1 M
 libxcrypt-devel                        i686    4.4.36-2.fc39              local       30 k
 libxkbcommon                           i686    1.6.0-1.fc40               local      147 k
 libxkbcommon-x11                       i686    1.6.0-1.fc40               local       22 k
 libxshmfence                           i686    1.3.2-1.fc40               local       12 k
 llvm-libs                              i686    17.0.6-1.fc40              local       27 M
 mesa-libEGL                            i686    23.3.0-1.fc40              local      145 k
 mesa-libEGL-devel                      i686    23.3.0-1.fc40              local       21 k
 mesa-libGL                             i686    23.3.0-1.fc40              local      188 k
 mesa-libGLU                            i686    9.0.3-1.fc39               local      164 k
 mesa-libgbm                            i686    23.3.0-1.fc40              local       47 k
 mesa-libglapi                          i686    23.3.0-1.fc40              local       51 k
 mpdecimal                              i686    2.5.1-7.fc39               local       91 k
 msgpack                                i686    3.1.0-13.fc39              local       30 k
 msgpack-devel                          i686    3.1.0-13.fc39              local      313 k
 mtdev                                  i686    1.1.6-6.fc39               local       21 k
 ncurses                                i686    6.4-8.20231001.fc40        local      414 k
 netpbm                                 i686    11.02.00-3.fc40            local      194 k
 nettle                                 i686    3.9.1-2.fc39               local      439 k
 nspr                                   i686    4.35.0-16.fc40             local      148 k
 nss                                    i686    3.95.0-1.fc40              local      752 k
 nss-softokn                            i686    3.95.0-1.fc40              local      440 k
 nss-softokn-freebl                     i686    3.95.0-1.fc40              local      373 k
 nss-sysinit                            i686    3.95.0-1.fc40              local       19 k
 nss-util                               i686    3.95.0-1.fc40              local       90 k
 openbabel-libs                         i686    3.1.1-21.fc39              local      3.9 M
 openblas                               i686    0.3.25-1.fc40              local       38 k
 openblas-openmp                        i686    0.3.25-1.fc40              local      3.9 M
 openjpeg2                              i686    2.5.0-5.fc40               local      188 k
 openssl-devel                          i686    1:3.1.4-1.fc40             local      2.5 M
 pango                                  i686    1.51.0-1.fc40              local      359 k
 pcre2-utf16                            i686    10.42-2.fc40               local      213 k
 perl-AutoLoader                        noarch  5.74-503.fc40              local       21 k
 perl-B                                 i686    1.88-503.fc40              local      181 k
 perl-Carp                              noarch  1.54-500.fc39              local       29 k
 perl-Class-Struct                      noarch  0.68-503.fc40              local       22 k
 perl-Data-Dumper                       i686    2.188-501.fc39             local       58 k
 perl-Digest                            noarch  1.20-500.fc39              local       25 k
 perl-Digest-MD5                        i686    2.58-501.fc40              local       36 k
 perl-DynaLoader                        i686    1.54-503.fc40              local       26 k
 perl-Encode                            i686    4:3.20-501.fc40            local      1.2 M
 perl-English                           noarch  1.11-503.fc40              local       14 k
 perl-Errno                             i686    1.37-503.fc40              local       15 k
 perl-Exporter                          noarch  5.77-500.fc39              local       31 k
 perl-Fcntl                             i686    1.15-503.fc40              local       21 k
 perl-File-Basename                     noarch  2.86-503.fc40              local       17 k
 perl-File-Find                         noarch  1.43-503.fc40              local       26 k
 perl-File-Path                         noarch  2.18-501.fc40              local       35 k
 perl-File-Temp                         noarch  1:0.231.100-501.fc40       local       59 k
 perl-File-stat                         noarch  1.13-503.fc40              local       17 k
 perl-FileHandle                        noarch  2.05-503.fc40              local       16 k
 perl-Getopt-Long                       noarch  1:2.57-1.fc40              local       63 k
 perl-Getopt-Std                        noarch  1.13-503.fc40              local       16 k
 perl-HTTP-Tiny                         noarch  0.088-3.fc39               local       56 k
 perl-IO                                i686    1.52-503.fc40              local       79 k
 perl-IO-Socket-IP                      noarch  0.42-1.fc39                local       42 k
 perl-IO-Socket-SSL                     noarch  2.084-1.fc40               local      221 k
 perl-IPC-Open3                         noarch  1.22-503.fc40              local       22 k
 perl-MIME-Base64                       i686    3.16-501.fc40              local       30 k
 perl-Mozilla-CA                        noarch  20230821-1.fc40            local       13 k
 perl-Net-SSLeay                        i686    1.92-10.fc39               local      350 k
 perl-POSIX                             i686    2.13-503.fc40              local      101 k
 perl-PathTools                         i686    3.89-500.fc39              local       83 k
 perl-Pod-Escapes                       noarch  1:1.07-501.fc40            local       19 k
 perl-Pod-Perldoc                       noarch  3.28.01-501.fc39           local       80 k
 perl-Pod-Simple                        noarch  1:3.45-4.fc39              local      208 k
 perl-Pod-Usage                         noarch  4:2.03-500.fc39            local       39 k
 perl-Scalar-List-Utils                 i686    5:1.63-500.fc39            local       75 k
 perl-SelectSaver                       noarch  1.02-503.fc40              local       12 k
 perl-Socket                            i686    4:2.037-3.fc39             local       56 k
 perl-Storable                          i686    1:3.32-500.fc39            local      101 k
 perl-Symbol                            noarch  1.09-503.fc40              local       14 k
 perl-Term-ANSIColor                    noarch  5.01-502.fc40              local       47 k
 perl-Term-Cap                          noarch  1.18-500.fc39              local       22 k
 perl-Text-ParseWords                   noarch  3.31-500.fc39              local       16 k
 perl-Text-Tabs+Wrap                    noarch  2023.0511-3.fc39           local       22 k
 perl-Time-Local                        noarch  2:1.350-3.fc39             local       34 k
 perl-URI                               noarch  5.21-1.fc40                local      113 k
 perl-base                              noarch  2.27-503.fc40              local       16 k
 perl-constant                          noarch  1.33-501.fc39              local       22 k
 perl-if                                noarch  0.61.000-503.fc40          local       14 k
 perl-interpreter                       i686    4:5.38.2-503.fc40          local       72 k
 perl-libnet                            noarch  3.15-501.fc39              local      122 k
 perl-libs                              i686    4:5.38.2-503.fc40          local      2.3 M
 perl-locale                            noarch  1.10-503.fc40              local       14 k
 perl-mro                               i686    1.28-503.fc40              local       30 k
 perl-overload                          noarch  1.37-503.fc40              local       46 k
 perl-overloading                       noarch  0.02-503.fc40              local       13 k
 perl-parent                            noarch  1:0.241-500.fc39           local       14 k
 perl-podlators                         noarch  1:5.01-500.fc39            local      120 k
 perl-vars                              noarch  1.05-503.fc40              local       13 k
 pixman                                 i686    0.42.2-2.fc39              local      298 k
 poppler                                i686    23.08.0-1.fc39             local      1.3 M
 poppler-data                           noarch  0.4.11-5.fc39              local      2.0 M
 poppler-glib                           i686    23.08.0-1.fc39             local      195 k
 pyproject-rpm-macros                   noarch  1.10.0-1.fc40              local       41 k
 python-pip-wheel                       noarch  23.2.1-1.fc39              local      1.5 M
 python-rpm-macros                      noarch  3.12-5.fc40                local       19 k
 python3                                i686    3.12.1-1.fc40              local       26 k
 python3-libs                           i686    3.12.1-1.fc40              local      9.0 M
 python3-numpy                          i686    1:1.26.0-2.fc40            local      6.8 M
 python3-packaging                      noarch  23.2-2.fc40                local      115 k
 python3-rpm-generators                 noarch  14-8.fc40                  local       30 k
 python3-rpm-macros                     noarch  3.12-5.fc40                local       14 k
 qt-settings                            noarch  39.0-2.fc40                local      9.5 k
 qt5-designer                           i686    5.15.11-1.fc40             local      176 k
 qt5-doctools                           i686    5.15.11-1.fc40             local      755 k
 qt5-linguist                           i686    5.15.11-1.fc40             local      937 k
 qt5-qtbase                             i686    5.15.11-7.fc40             local      3.8 M
 qt5-qtbase-common                      noarch  5.15.11-7.fc40             local       12 k
 qt5-qtbase-gui                         i686    5.15.11-7.fc40             local      7.1 M
 qt5-qtdeclarative                      i686    5.15.11-2.fc40             local      4.7 M
 qt5-qtsvg                              i686    5.15.11-1.fc40             local      202 k
 qt5-qttools                            i686    5.15.11-1.fc40             local       44 k
 qt5-qttools-common                     noarch  5.15.11-1.fc40             local       11 k
 qt5-qttools-libs-designer              i686    5.15.11-1.fc40             local      2.8 M
 qt5-qttools-libs-designercomponents    i686    5.15.11-1.fc40             local      862 k
 qt5-qttools-libs-help                  i686    5.15.11-1.fc40             local      176 k
 qt5-rpm-macros                         noarch  5.15.11-1.fc40             local       10 k
 rav1e-libs                             i686    0.6.6-4.fc40               local      781 k
 rhash                                  i686    1.4.3-3.fc39               local      210 k
 rsvg-pixbuf-loader                     i686    2.57.0-3.fc40              local       16 k
 shared-mime-info                       i686    2.3-2.fc40                 local      392 k
 spglib                                 i686    2.0.2-3.fc39               local      215 k
 svt-av1-libs                           i686    1.4.1-3.fc39               local      1.1 M
 tzdata                                 noarch  2023c-4.fc40               local      433 k
 urw-base35-bookman-fonts               noarch  20200910-18.fc39           local      847 k
 urw-base35-c059-fonts                  noarch  20200910-18.fc39           local      874 k
 urw-base35-d050000l-fonts              noarch  20200910-18.fc39           local       76 k
 urw-base35-fonts                       noarch  20200910-18.fc39           local       10 k
 urw-base35-fonts-common                noarch  20200910-18.fc39           local       21 k
 urw-base35-gothic-fonts                noarch  20200910-18.fc39           local      643 k
 urw-base35-nimbus-mono-ps-fonts        noarch  20200910-18.fc39           local      795 k
 urw-base35-nimbus-roman-fonts          noarch  20200910-18.fc39           local      856 k
 urw-base35-nimbus-sans-fonts           noarch  20200910-18.fc39           local      1.3 M
 urw-base35-p052-fonts                  noarch  20200910-18.fc39           local      974 k
 urw-base35-standard-symbols-ps-fonts   noarch  20200910-18.fc39           local       42 k
 urw-base35-z003-fonts                  noarch  20200910-18.fc39           local      276 k
 vim-filesystem                         noarch  2:9.0.2153-1.fc40          local       18 k
 vulkan-headers                         noarch  1.3.268.0-1.fc40           local      1.2 M
 vulkan-loader                          i686    1.3.268.0-1.fc40           local      158 k
 vulkan-loader-devel                    i686    1.3.268.0-1.fc40           local       11 k
 xapian-core-libs                       i686    1.4.23-1.fc39              local      829 k
 xcb-util                               i686    0.4.1-3.fc39               local       19 k
 xcb-util-image                         i686    0.4.1-3.fc39               local       19 k
 xcb-util-keysyms                       i686    0.4.1-3.fc39               local       14 k
 xcb-util-renderutil                    i686    0.3.10-3.fc39              local       18 k
 xcb-util-wm                            i686    0.4.2-3.fc39               local       34 k
 xkeyboard-config                       noarch  2.40-2.fc40                local      917 k
 xml-common                             noarch  0.6.3-62.fc40              local       31 k
 xorg-x11-proto-devel                   noarch  2023.2-3.fc40              local      263 k
 zlib-devel                             i686    1.2.13-5.fc40              local       44 k

Transaction Summary
===========================================================================================
Install  328 Packages

Total download size: 310 M
Installed size: 1.2 G
Downloading Packages:
(1/328): boost-1.83.0-0.fc40.i686.rpm           447 kB/s |  14 kB     00:00    
(2/328): boost-atomic-1.83.0-0.fc40.i686.rpm    465 kB/s |  20 kB     00:00    
(3/328): boost-chrono-1.83.0-0.fc40.i686.rpm    636 kB/s |  28 kB     00:00    
(4/328): boost-container-1.83.0-0.fc40.i686.rpm 3.5 MB/s |  41 kB     00:00    
(5/328): boost-context-1.83.0-0.fc40.i686.rpm   1.8 MB/s |  17 kB     00:00    
(6/328): boost-contract-1.83.0-0.fc40.i686.rpm  3.0 MB/s |  49 kB     00:00    
(7/328): boost-coroutine-1.83.0-0.fc40.i686.rpm 1.3 MB/s |  21 kB     00:00    
(8/328): boost-date-time-1.83.0-0.fc40.i686.rpm 1.7 MB/s |  16 kB     00:00    
(9/328): boost-fiber-1.83.0-0.fc40.i686.rpm     1.2 MB/s |  45 kB     00:00    
(10/328): boost-filesystem-1.83.0-0.fc40.i686.r 2.0 MB/s |  73 kB     00:00    
(11/328): boost-graph-1.83.0-0.fc40.i686.rpm    2.2 MB/s | 159 kB     00:00    
(12/328): boost-iostreams-1.83.0-0.fc40.i686.rp 627 kB/s |  45 kB     00:00    
(13/328): boost-devel-1.83.0-0.fc40.i686.rpm     73 MB/s |  12 MB     00:00    
(14/328): boost-json-1.83.0-0.fc40.i686.rpm     3.0 MB/s | 160 kB     00:00    
(15/328): boost-locale-1.83.0-0.fc40.i686.rpm   4.4 MB/s | 235 kB     00:00    
(16/328): boost-log-1.83.0-0.fc40.i686.rpm       37 MB/s | 532 kB     00:00    
(17/328): boost-math-1.83.0-0.fc40.i686.rpm      14 MB/s | 216 kB     00:00    
(18/328): boost-nowide-1.83.0-0.fc40.i686.rpm   1.4 MB/s |  22 kB     00:00    
(19/328): boost-numpy3-1.83.0-0.fc40.i686.rpm   3.3 MB/s |  31 kB     00:00    
(20/328): boost-program-options-1.83.0-0.fc40.i  11 MB/s | 118 kB     00:00    
(21/328): boost-python3-1.83.0-0.fc40.i686.rpm  9.1 MB/s | 104 kB     00:00    
(22/328): boost-random-1.83.0-0.fc40.i686.rpm   2.8 MB/s |  25 kB     00:00    
(23/328): boost-regex-1.83.0-0.fc40.i686.rpm     11 MB/s | 116 kB     00:00    
(24/328): boost-serialization-1.83.0-0.fc40.i68  13 MB/s | 145 kB     00:00    
(25/328): boost-stacktrace-1.83.0-0.fc40.i686.r 3.5 MB/s |  32 kB     00:00    
(26/328): boost-system-1.83.0-0.fc40.i686.rpm   1.7 MB/s |  16 kB     00:00    
(27/328): boost-test-1.83.0-0.fc40.i686.rpm      21 MB/s | 257 kB     00:00    
(28/328): boost-thread-1.83.0-0.fc40.i686.rpm   6.8 MB/s |  66 kB     00:00    
(29/328): boost-timer-1.83.0-0.fc40.i686.rpm    2.1 MB/s |  23 kB     00:00    
(30/328): boost-type_erasure-1.83.0-0.fc40.i686 3.7 MB/s |  35 kB     00:00    
(31/328): boost-wave-1.83.0-0.fc40.i686.rpm      19 MB/s | 231 kB     00:00    
(32/328): abattis-cantarell-vf-fonts-0.301-10.f 1.8 MB/s | 121 kB     00:00    
(33/328): adobe-mappings-cmap-deprecated-202306 1.6 MB/s | 113 kB     00:00    
(34/328): annobin-docs-12.33-1.fc40.noarch.rpm  7.8 MB/s |  91 kB     00:00    
(35/328): adobe-mappings-pdf-20190401-5.fc39.no  18 MB/s | 689 kB     00:00    
(36/328): adobe-mappings-cmap-20230622-1.fc39.n  19 MB/s | 2.1 MB     00:00    
(37/328): avahi-libs-0.8-24.fc39.i686.rpm       5.4 MB/s |  73 kB     00:00    
(38/328): annobin-plugin-gcc-12.33-1.fc40.i686.  22 MB/s | 959 kB     00:00    
(39/328): cairo-1.18.0-1.fc40.i686.rpm           37 MB/s | 755 kB     00:00    
(40/328): cairo-gobject-1.18.0-1.fc40.i686.rpm  1.1 MB/s |  17 kB     00:00    
(41/328): clang-resource-filesystem-17.0.6-1.fc 1.1 MB/s |  14 kB     00:00    
(42/328): chrpath-0.16-21.fc39.i686.rpm         568 kB/s |  30 kB     00:00    
(43/328): cmake-data-3.27.7-1.fc40.noarch.rpm    27 MB/s | 1.7 MB     00:00    
(44/328): cmake-filesystem-3.27.7-1.fc40.i686.r 661 kB/s |  19 kB     00:00    
(45/328): cmake-3.27.7-1.fc40.i686.rpm           64 MB/s |  10 MB     00:00    
(46/328): cmake-rpm-macros-3.27.7-1.fc40.noarch 674 kB/s |  19 kB     00:00    
(47/328): crypto-policies-scripts-20231204-1.gi 6.7 MB/s | 105 kB     00:00    
(48/328): cups-libs-2.4.7-4.fc40.i686.rpm       9.0 MB/s | 284 kB     00:00    
(49/328): dbus-libs-1.14.10-1.fc40.i686.rpm     4.4 MB/s | 167 kB     00:00    
(50/328): default-fonts-core-sans-4.0-9.fc40.no 683 kB/s |  25 kB     00:00    
(51/328): double-conversion-3.1.5-9.fc39.i686.r 1.2 MB/s |  52 kB     00:00    
(52/328): cpp-13.2.1-6.fc40.i686.rpm             60 MB/s |  11 MB     00:00    
(53/328): duktape-2.7.0-5.fc39.i686.rpm         7.0 MB/s | 176 kB     00:00    
(54/328): eigen3-devel-3.4.0-12.fc39.noarch.rpm  31 MB/s | 1.1 MB     00:00    
(55/328): emacs-filesystem-29.1-14.fc40.noarch. 353 kB/s | 7.4 kB     00:00    
(56/328): expat-2.5.0-3.fc39.i686.rpm           5.4 MB/s | 114 kB     00:00    
(57/328): flexiblas-3.3.1-5.fc39.i686.rpm       1.0 MB/s |  33 kB     00:00    
(58/328): doxygen-1.9.8-1.fc40.i686.rpm          31 MB/s | 5.5 MB     00:00    
(59/328): flexiblas-openblas-openmp-3.3.1-5.fc3 689 kB/s |  17 kB     00:00    
(60/328): flexiblas-netlib-3.3.1-5.fc39.i686.rp  44 MB/s | 3.1 MB     00:00    
(61/328): fontconfig-2.14.2-5.fc40.i686.rpm      12 MB/s | 293 kB     00:00    
(62/328): clang-libs-17.0.6-1.fc40.i686.rpm      40 MB/s |  24 MB     00:00    
(63/328): fonts-filesystem-2.0.5-12.fc39.noarch 270 kB/s | 8.2 kB     00:00    
(64/328): freetype-2.13.1-2.fc39.i686.rpm        14 MB/s | 419 kB     00:00    
(65/328): fribidi-1.0.13-2.fc39.i686.rpm        6.4 MB/s |  92 kB     00:00    
(66/328): gc-8.2.2-4.fc39.i686.rpm              7.9 MB/s | 113 kB     00:00    
(67/328): gcc-gfortran-13.2.1-6.fc40.i686.rpm    35 MB/s |  12 MB     00:00    
(68/328): gcc-plugin-annobin-13.2.1-6.fc40.i686 2.0 MB/s |  50 kB     00:00    
(69/328): gd-2.3.3-12.fc39.i686.rpm             5.4 MB/s | 145 kB     00:00    
(70/328): gdk-pixbuf2-2.42.10-5.fc39.i686.rpm    15 MB/s | 470 kB     00:00    
(71/328): gcc-c++-13.2.1-6.fc40.i686.rpm         28 MB/s |  13 MB     00:00    
(72/328): gl-manpages-1.1-29.20190306.fc40.noar  29 MB/s | 1.0 MB     00:00    
(73/328): glew-devel-2.2.0-5.fc39.i686.rpm      4.6 MB/s | 217 kB     00:00    
(74/328): glibc-devel-2.38.9000-26.fc40.i686.rp 4.4 MB/s |  96 kB     00:00    
(75/328): glibc-headers-x86-2.38.9000-26.fc40.n  20 MB/s | 510 kB     00:00    
(76/328): glib2-2.78.3-1.fc40.i686.rpm           36 MB/s | 2.9 MB     00:00    
(77/328): glx-utils-9.0.0-4.fc40.i686.rpm       3.8 MB/s |  74 kB     00:00    
(78/328): gnutls-3.8.2-2.fc40.i686.rpm           38 MB/s | 1.1 MB     00:00    
(79/328): google-noto-fonts-common-20230801-4.f 896 kB/s |  17 kB     00:00    
(80/328): gcc-13.2.1-6.fc40.i686.rpm             50 MB/s |  34 MB     00:00    
(81/328): google-noto-sans-vf-fonts-20230801-4.  10 MB/s | 583 kB     00:00    
(82/328): google-droid-sans-fonts-20200215-17.f  27 MB/s | 2.7 MB     00:00    
(83/328): graphite2-1.3.14-13.fc40.i686.rpm     7.4 MB/s |  96 kB     00:00    
(84/328): gts-0.7.6-46.20121130.fc39.i686.rpm   9.2 MB/s | 246 kB     00:00    
(85/328): groff-base-1.23.0-3.fc40.i686.rpm      24 MB/s | 1.1 MB     00:00    
(86/328): graphviz-9.0.0-3.fc40.i686.rpm         52 MB/s | 5.1 MB     00:00    
(87/328): harfbuzz-8.3.0-2.fc40.i686.rpm         21 MB/s | 1.0 MB     00:00    
(88/328): guile22-2.2.7-9.fc39.i686.rpm          52 MB/s | 6.5 MB     00:00    
(89/328): hdf5-devel-1.12.1-15.fc40.i686.rpm     17 MB/s | 1.3 MB     00:00    
(90/328): highway-1.0.7-1.fc40.i686.rpm          14 MB/s | 302 kB     00:00    
(91/328): hdf5-1.12.1-15.fc40.i686.rpm           21 MB/s | 2.1 MB     00:00    
(92/328): hwdata-0.377-2.fc40.noarch.rpm         45 MB/s | 1.6 MB     00:00    
(93/328): jbig2dec-libs-0.20-1.fc40.i686.rpm    4.3 MB/s |  76 kB     00:00    
(94/328): jbigkit-libs-2.1-27.fc40.i686.rpm     3.9 MB/s |  53 kB     00:00    
(95/328): jsoncpp-1.9.5-5.fc39.i686.rpm         7.1 MB/s | 109 kB     00:00    
(96/328): inchi-libs-1.0.6-7.fc39.i686.rpm       11 MB/s | 664 kB     00:00    
(97/328): kernel-headers-6.7.0-0.rc5.41.fc40.i6  50 MB/s | 1.4 MB     00:00    
(98/328): jsoncpp-devel-1.9.5-5.fc39.i686.rpm   931 kB/s |  29 kB     00:00    
(99/328): lasi-1.1.3-11.fc39.i686.rpm           3.8 MB/s |  57 kB     00:00    
(100/328): lcms2-2.15-2.fc39.i686.rpm            12 MB/s | 193 kB     00:00    
(101/328): libICE-1.1.1-1.fc40.i686.rpm         4.0 MB/s |  77 kB     00:00    
(102/328): libSM-1.2.4-1.fc40.i686.rpm          3.1 MB/s |  44 kB     00:00    
(103/328): libX11-1.8.7-1.fc40.i686.rpm          35 MB/s | 672 kB     00:00    
(104/328): libGLEW-2.2.0-5.fc39.i686.rpm        4.4 MB/s | 177 kB     00:00    
(105/328): libX11-common-1.8.7-1.fc40.noarch.rp  11 MB/s | 144 kB     00:00    
(106/328): libX11-xcb-1.8.7-1.fc40.i686.rpm     1.0 MB/s |  12 kB     00:00    
(107/328): libX11-devel-1.8.7-1.fc40.i686.rpm    40 MB/s | 912 kB     00:00    
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(158/328): libtool-ltdl-2.4.7-8.fc40.i686.rpm   2.7 MB/s |  38 kB     00:00    
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(166/328): libwebp-1.3.2-2.fc40.i686.rpm         16 MB/s | 295 kB     00:00    
(167/328): libxcb-1.16-2.fc40.i686.rpm           16 MB/s | 253 kB     00:00    
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(171/328): libxkbcommon-x11-1.6.0-1.fc40.i686.r 1.5 MB/s |  22 kB     00:00    
(172/328): libxshmfence-1.3.2-1.fc40.i686.rpm   769 kB/s |  12 kB     00:00    
(173/328): mesa-libEGL-23.3.0-1.fc40.i686.rpm    11 MB/s | 145 kB     00:00    
(174/328): make-4.4.1-2.fc39.i686.rpm            28 MB/s | 589 kB     00:00    
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(176/328): mesa-libEGL-devel-23.3.0-1.fc40.i686 951 kB/s |  21 kB     00:00    
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(178/328): mesa-libGLU-devel-9.0.3-1.fc39.i686. 720 kB/s |  12 kB     00:00    
(179/328): mesa-libgbm-23.3.0-1.fc40.i686.rpm   3.5 MB/s |  47 kB     00:00    
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(185/328): ncurses-6.4-8.20231001.fc40.i686.rpm  24 MB/s | 414 kB     00:00    
(186/328): msgpack-devel-3.1.0-13.fc39.i686.rpm 6.3 MB/s | 313 kB     00:00    
(187/328): netpbm-11.02.00-3.fc40.i686.rpm       13 MB/s | 194 kB     00:00    
(188/328): nettle-3.9.1-2.fc39.i686.rpm          24 MB/s | 439 kB     00:00    
(189/328): nspr-4.35.0-16.fc40.i686.rpm          11 MB/s | 148 kB     00:00    
(190/328): nss-3.95.0-1.fc40.i686.rpm            38 MB/s | 752 kB     00:00    
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(195/328): openbabel-devel-3.1.1-21.fc39.i686.r 4.4 MB/s | 191 kB     00:00    
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(200/328): pango-1.51.0-1.fc40.i686.rpm          16 MB/s | 359 kB     00:00    
(201/328): openssl-devel-3.1.4-1.fc40.i686.rpm   47 MB/s | 2.5 MB     00:00    
(202/328): pcre2-utf16-10.42-2.fc40.i686.rpm    6.7 MB/s | 213 kB     00:00    
(203/328): perl-AutoLoader-5.74-503.fc40.noarch 1.6 MB/s |  21 kB     00:00    
(204/328): perl-B-1.88-503.fc40.i686.rpm         11 MB/s | 181 kB     00:00    
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(209/328): perl-Digest-MD5-2.58-501.fc40.i686.r 2.4 MB/s |  36 kB     00:00    
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(215/328): perl-Fcntl-1.15-503.fc40.i686.rpm    1.5 MB/s |  21 kB     00:00    
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(229/328): llvm-libs-17.0.6-1.fc40.i686.rpm      40 MB/s |  27 MB     00:00    
(230/328): perl-MIME-Base64-3.16-501.fc40.i686. 735 kB/s |  30 kB     00:00    
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(232/328): perl-POSIX-2.13-503.fc40.i686.rpm    7.4 MB/s | 101 kB     00:00    
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(234/328): perl-PathTools-3.89-500.fc39.i686.rp 4.6 MB/s |  83 kB     00:00    
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(259/328): perl-libs-5.38.2-503.fc40.i686.rpm    61 MB/s | 2.3 MB     00:00    
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(263/328): pixman-0.42.2-2.fc39.i686.rpm         18 MB/s | 298 kB     00:00    
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(267/328): pyproject-rpm-macros-1.10.0-1.fc40.n 3.1 MB/s |  41 kB     00:00    
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(277/328): qt5-designer-5.15.11-1.fc40.i686.rpm 4.2 MB/s | 176 kB     00:00    
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(286/328): qt5-qtsvg-5.15.11-1.fc40.i686.rpm    9.0 MB/s | 202 kB     00:00    
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(294/328): qt5-rpm-macros-5.15.11-1.fc40.noarch 716 kB/s |  10 kB     00:00    
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Total                                            74 MB/s | 310 MB     00:04     
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Installed:
  abattis-cantarell-vf-fonts-0.301-10.fc39.noarch                               
  adobe-mappings-cmap-20230622-1.fc39.noarch                                    
  adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch                         
  adobe-mappings-pdf-20190401-5.fc39.noarch                                     
  annobin-docs-12.33-1.fc40.noarch                                              
  annobin-plugin-gcc-12.33-1.fc40.i686                                          
  avahi-libs-0.8-24.fc39.i686                                                   
  boost-1.83.0-0.fc40.i686                                                      
  boost-atomic-1.83.0-0.fc40.i686                                               
  boost-chrono-1.83.0-0.fc40.i686                                               
  boost-container-1.83.0-0.fc40.i686                                            
  boost-context-1.83.0-0.fc40.i686                                              
  boost-contract-1.83.0-0.fc40.i686                                             
  boost-coroutine-1.83.0-0.fc40.i686                                            
  boost-date-time-1.83.0-0.fc40.i686                                            
  boost-devel-1.83.0-0.fc40.i686                                                
  boost-fiber-1.83.0-0.fc40.i686                                                
  boost-filesystem-1.83.0-0.fc40.i686                                           
  boost-graph-1.83.0-0.fc40.i686                                                
  boost-iostreams-1.83.0-0.fc40.i686                                            
  boost-json-1.83.0-0.fc40.i686                                                 
  boost-locale-1.83.0-0.fc40.i686                                               
  boost-log-1.83.0-0.fc40.i686                                                  
  boost-math-1.83.0-0.fc40.i686                                                 
  boost-nowide-1.83.0-0.fc40.i686                                               
  boost-numpy3-1.83.0-0.fc40.i686                                               
  boost-program-options-1.83.0-0.fc40.i686                                      
  boost-python3-1.83.0-0.fc40.i686                                              
  boost-random-1.83.0-0.fc40.i686                                               
  boost-regex-1.83.0-0.fc40.i686                                                
  boost-serialization-1.83.0-0.fc40.i686                                        
  boost-stacktrace-1.83.0-0.fc40.i686                                           
  boost-system-1.83.0-0.fc40.i686                                               
  boost-test-1.83.0-0.fc40.i686                                                 
  boost-thread-1.83.0-0.fc40.i686                                               
  boost-timer-1.83.0-0.fc40.i686                                                
  boost-type_erasure-1.83.0-0.fc40.i686                                         
  boost-wave-1.83.0-0.fc40.i686                                                 
  cairo-1.18.0-1.fc40.i686                                                      
  cairo-gobject-1.18.0-1.fc40.i686                                              
  chrpath-0.16-21.fc39.i686                                                     
  clang-libs-17.0.6-1.fc40.i686                                                 
  clang-resource-filesystem-17.0.6-1.fc40.noarch                                
  cmake-3.27.7-1.fc40.i686                                                      
  cmake-data-3.27.7-1.fc40.noarch                                               
  cmake-filesystem-3.27.7-1.fc40.i686                                           
  cmake-rpm-macros-3.27.7-1.fc40.noarch                                         
  cpp-13.2.1-6.fc40.i686                                                        
  crypto-policies-scripts-20231204-1.git1e3a2e4.fc40.noarch                     
  cups-libs-1:2.4.7-4.fc40.i686                                                 
  dbus-libs-1:1.14.10-1.fc40.i686                                               
  default-fonts-core-sans-4.0-9.fc40.noarch                                     
  double-conversion-3.1.5-9.fc39.i686                                           
  doxygen-2:1.9.8-1.fc40.i686                                                   
  duktape-2.7.0-5.fc39.i686                                                     
  eigen3-devel-3.4.0-12.fc39.noarch                                             
  emacs-filesystem-1:29.1-14.fc40.noarch                                        
  expat-2.5.0-3.fc39.i686                                                       
  flexiblas-3.3.1-5.fc39.i686                                                   
  flexiblas-netlib-3.3.1-5.fc39.i686                                            
  flexiblas-openblas-openmp-3.3.1-5.fc39.i686                                   
  fontconfig-2.14.2-5.fc40.i686                                                 
  fonts-filesystem-1:2.0.5-12.fc39.noarch                                       
  freetype-2.13.1-2.fc39.i686                                                   
  fribidi-1.0.13-2.fc39.i686                                                    
  gc-8.2.2-4.fc39.i686                                                          
  gcc-13.2.1-6.fc40.i686                                                        
  gcc-c++-13.2.1-6.fc40.i686                                                    
  gcc-gfortran-13.2.1-6.fc40.i686                                               
  gcc-plugin-annobin-13.2.1-6.fc40.i686                                         
  gd-2.3.3-12.fc39.i686                                                         
  gdk-pixbuf2-2.42.10-5.fc39.i686                                               
  gl-manpages-1.1-29.20190306.fc40.noarch                                       
  glew-devel-2.2.0-5.fc39.i686                                                  
  glib2-2.78.3-1.fc40.i686                                                      
  glibc-devel-2.38.9000-26.fc40.i686                                            
  glibc-headers-x86-2.38.9000-26.fc40.noarch                                    
  glx-utils-9.0.0-4.fc40.i686                                                   
  gnutls-3.8.2-2.fc40.i686                                                      
  google-droid-sans-fonts-20200215-17.fc40.noarch                               
  google-noto-fonts-common-20230801-4.fc40.noarch                               
  google-noto-sans-vf-fonts-20230801-4.fc40.noarch                              
  graphite2-1.3.14-13.fc40.i686                                                 
  graphviz-9.0.0-3.fc40.i686                                                    
  groff-base-1.23.0-3.fc40.i686                                                 
  gts-0.7.6-46.20121130.fc39.i686                                               
  guile22-2.2.7-9.fc39.i686                                                     
  harfbuzz-8.3.0-2.fc40.i686                                                    
  hdf5-1.12.1-15.fc40.i686                                                      
  hdf5-devel-1.12.1-15.fc40.i686                                                
  highway-1.0.7-1.fc40.i686                                                     
  hwdata-0.377-2.fc40.noarch                                                    
  inchi-libs-1.0.6-7.fc39.i686                                                  
  jbig2dec-libs-0.20-1.fc40.i686                                                
  jbigkit-libs-2.1-27.fc40.i686                                                 
  jsoncpp-1.9.5-5.fc39.i686                                                     
  jsoncpp-devel-1.9.5-5.fc39.i686                                               
  kernel-headers-6.7.0-0.rc5.41.fc40.i686                                       
  lasi-1.1.3-11.fc39.i686                                                       
  lcms2-2.15-2.fc39.i686                                                        
  libGLEW-2.2.0-5.fc39.i686                                                     
  libICE-1.1.1-1.fc40.i686                                                      
  libSM-1.2.4-1.fc40.i686                                                       
  libX11-1.8.7-1.fc40.i686                                                      
  libX11-common-1.8.7-1.fc40.noarch                                             
  libX11-devel-1.8.7-1.fc40.i686                                                
  libX11-xcb-1.8.7-1.fc40.i686                                                  
  libXau-1.0.11-4.fc40.i686                                                     
  libXau-devel-1.0.11-4.fc40.i686                                               
  libXext-1.3.5-4.fc40.i686                                                     
  libXfixes-6.0.1-1.fc40.i686                                                   
  libXft-2.3.8-4.fc40.i686                                                      
  libXpm-3.5.17-1.fc40.i686                                                     
  libXrender-0.9.11-4.fc40.i686                                                 
  libXt-1.3.0-1.fc40.i686                                                       
  libXxf86vm-1.1.5-4.fc40.i686                                                  
  libaec-1.0.6-5.fc39.i686                                                      
  libaec-devel-1.0.6-5.fc39.i686                                                
  libaom-3.7.1-1.fc40.i686                                                      
  libarchive-devel-3.7.2-1.fc40.i686                                            
  libasan-13.2.1-6.fc40.i686                                                    
  libatomic-13.2.1-6.fc40.i686                                                  
  libavif-0.11.1-11.fc39.i686                                                   
  libb2-0.98.1-9.fc39.i686                                                      
  libdatrie-0.2.13-7.fc39.i686                                                  
  libdav1d-1.2.1-2.fc39.i686                                                    
  libdrm-2.4.117-1.fc40.i686                                                    
  libedit-3.1-48.20230828cvs.fc40.i686                                          
  libevdev-1.13.1-2.fc39.i686                                                   
  libgfortran-13.2.1-6.fc40.i686                                                
  libglvnd-1:1.7.0-1.fc40.i686                                                  
  libglvnd-core-devel-1:1.7.0-1.fc40.i686                                       
  libglvnd-devel-1:1.7.0-1.fc40.i686                                            
  libglvnd-egl-1:1.7.0-1.fc40.i686                                              
  libglvnd-gles-1:1.7.0-1.fc40.i686                                             
  libglvnd-glx-1:1.7.0-1.fc40.i686                                              
  libglvnd-opengl-1:1.7.0-1.fc40.i686                                           
  libgs-10.02.1-4.fc40.i686                                                     
  libgudev-238-2.fc39.i686                                                      
  libicu-73.2-2.fc39.i686                                                       
  libicu-devel-73.2-2.fc39.i686                                                 
  libijs-0.35-19.fc39.i686                                                      
  libimagequant-4.0.3-2.fc40.i686                                               
  libinput-1.24.0-1.fc40.i686                                                   
  libjpeg-turbo-2.1.4-3.fc39.i686                                               
  libjxl-1:0.8.2-3.fc40.i686                                                    
  liblerc-4.0.0-4.fc39.i686                                                     
  libmpc-1.3.1-3.fc39.i686                                                      
  libpaper-1:2.1.1-1.fc39.i686                                                  
  libpciaccess-0.16-9.fc39.i686                                                 
  libpng-2:1.6.40-1.fc40.i686                                                   
  libproxy-0.5.3-3.fc40.i686                                                    
  libquadmath-13.2.1-6.fc40.i686                                                
  libquadmath-devel-13.2.1-6.fc40.i686                                          
  librsvg2-2.57.0-3.fc40.i686                                                   
  libstdc++-devel-13.2.1-6.fc40.i686                                            
  libthai-0.1.29-6.fc39.i686                                                    
  libtiff-4.5.0-3.fc40.i686                                                     
  libtool-ltdl-2.4.7-8.fc40.i686                                                
  libubsan-13.2.1-6.fc40.i686                                                   
  libuv-1:1.47.0-3.fc40.i686                                                    
  libwacom-2.9.0-1.fc40.i686                                                    
  libwacom-data-2.9.0-1.fc40.noarch                                             
  libwayland-client-1.22.0-2.fc39.i686                                          
  libwayland-server-1.22.0-2.fc39.i686                                          
  libwebp-1.3.2-2.fc40.i686                                                     
  libxcb-1.16-2.fc40.i686                                                       
  libxcb-devel-1.16-2.fc40.i686                                                 
  libxcrypt-devel-4.4.36-2.fc39.i686                                            
  libxkbcommon-1.6.0-1.fc40.i686                                                
  libxkbcommon-x11-1.6.0-1.fc40.i686                                            
  libxshmfence-1.3.2-1.fc40.i686                                                
  llvm-libs-17.0.6-1.fc40.i686                                                  
  make-1:4.4.1-2.fc39.i686                                                      
  mesa-libEGL-23.3.0-1.fc40.i686                                                
  mesa-libEGL-devel-23.3.0-1.fc40.i686                                          
  mesa-libGL-23.3.0-1.fc40.i686                                                 
  mesa-libGLU-9.0.3-1.fc39.i686                                                 
  mesa-libGLU-devel-9.0.3-1.fc39.i686                                           
  mesa-libgbm-23.3.0-1.fc40.i686                                                
  mesa-libglapi-23.3.0-1.fc40.i686                                              
  mmtf-cpp-devel-1.1.0-3.fc39.i686                                              
  mpdecimal-2.5.1-7.fc39.i686                                                   
  msgpack-3.1.0-13.fc39.i686                                                    
  msgpack-devel-3.1.0-13.fc39.i686                                              
  mtdev-1.1.6-6.fc39.i686                                                       
  ncurses-6.4-8.20231001.fc40.i686                                              
  netpbm-11.02.00-3.fc40.i686                                                   
  nettle-3.9.1-2.fc39.i686                                                      
  nspr-4.35.0-16.fc40.i686                                                      
  nss-3.95.0-1.fc40.i686                                                        
  nss-softokn-3.95.0-1.fc40.i686                                                
  nss-softokn-freebl-3.95.0-1.fc40.i686                                         
  nss-sysinit-3.95.0-1.fc40.i686                                                
  nss-util-3.95.0-1.fc40.i686                                                   
  openbabel-devel-3.1.1-21.fc39.i686                                            
  openbabel-libs-3.1.1-21.fc39.i686                                             
  openblas-0.3.25-1.fc40.i686                                                   
  openblas-openmp-0.3.25-1.fc40.i686                                            
  openjpeg2-2.5.0-5.fc40.i686                                                   
  openssl-devel-1:3.1.4-1.fc40.i686                                             
  pango-1.51.0-1.fc40.i686                                                      
  pcre2-utf16-10.42-2.fc40.i686                                                 
  perl-AutoLoader-5.74-503.fc40.noarch                                          
  perl-B-1.88-503.fc40.i686                                                     
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-503.fc40.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.i686                                          
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-501.fc40.i686                                            
  perl-DynaLoader-1.54-503.fc40.i686                                            
  perl-Encode-4:3.20-501.fc40.i686                                              
  perl-English-1.11-503.fc40.noarch                                             
  perl-Errno-1.37-503.fc40.i686                                                 
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-503.fc40.i686                                                 
  perl-File-Basename-2.86-503.fc40.noarch                                       
  perl-File-Find-1.43-503.fc40.noarch                                           
  perl-File-Path-2.18-501.fc40.noarch                                           
  perl-File-Temp-1:0.231.100-501.fc40.noarch                                    
  perl-File-stat-1.13-503.fc40.noarch                                           
  perl-FileHandle-2.05-503.fc40.noarch                                          
  perl-Getopt-Long-1:2.57-1.fc40.noarch                                         
  perl-Getopt-Std-1.13-503.fc40.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-503.fc40.i686                                                    
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.084-1.fc40.noarch                                        
  perl-IPC-Open3-1.22-503.fc40.noarch                                           
  perl-MIME-Base64-3.16-501.fc40.i686                                           
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.i686                                             
  perl-POSIX-2.13-503.fc40.i686                                                 
  perl-PathTools-3.89-500.fc39.i686                                             
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.i686                                   
  perl-SelectSaver-1.02-503.fc40.noarch                                         
  perl-Socket-4:2.037-3.fc39.i686                                               
  perl-Storable-1:3.32-500.fc39.i686                                            
  perl-Symbol-1.09-503.fc40.noarch                                              
  perl-Term-ANSIColor-5.01-502.fc40.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-503.fc40.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-if-0.61.000-503.fc40.noarch                                              
  perl-interpreter-4:5.38.2-503.fc40.i686                                       
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.2-503.fc40.i686                                              
  perl-locale-1.10-503.fc40.noarch                                              
  perl-mro-1.28-503.fc40.i686                                                   
  perl-overload-1.37-503.fc40.noarch                                            
  perl-overloading-0.02-503.fc40.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-vars-1.05-503.fc40.noarch                                                
  pixman-0.42.2-2.fc39.i686                                                     
  poppler-23.08.0-1.fc39.i686                                                   
  poppler-data-0.4.11-5.fc39.noarch                                             
  poppler-glib-23.08.0-1.fc39.i686                                              
  pyproject-rpm-macros-1.10.0-1.fc40.noarch                                     
  python-pip-wheel-23.2.1-1.fc39.noarch                                         
  python-rpm-macros-3.12-5.fc40.noarch                                          
  python3-3.12.1-1.fc40.i686                                                    
  python3-devel-3.12.1-1.fc40.i686                                              
  python3-libs-3.12.1-1.fc40.i686                                               
  python3-numpy-1:1.26.0-2.fc40.i686                                            
  python3-packaging-23.2-2.fc40.noarch                                          
  python3-rpm-generators-14-8.fc40.noarch                                       
  python3-rpm-macros-3.12-5.fc40.noarch                                         
  qt-settings-39.0-2.fc40.noarch                                                
  qt5-designer-5.15.11-1.fc40.i686                                              
  qt5-doctools-5.15.11-1.fc40.i686                                              
  qt5-linguist-5.15.11-1.fc40.i686                                              
  qt5-qtbase-5.15.11-7.fc40.i686                                                
  qt5-qtbase-common-5.15.11-7.fc40.noarch                                       
  qt5-qtbase-devel-5.15.11-7.fc40.i686                                          
  qt5-qtbase-gui-5.15.11-7.fc40.i686                                            
  qt5-qtdeclarative-5.15.11-2.fc40.i686                                         
  qt5-qtsvg-5.15.11-1.fc40.i686                                                 
  qt5-qtsvg-devel-5.15.11-1.fc40.i686                                           
  qt5-qttools-5.15.11-1.fc40.i686                                               
  qt5-qttools-common-5.15.11-1.fc40.noarch                                      
  qt5-qttools-devel-5.15.11-1.fc40.i686                                         
  qt5-qttools-libs-designer-5.15.11-1.fc40.i686                                 
  qt5-qttools-libs-designercomponents-5.15.11-1.fc40.i686                       
  qt5-qttools-libs-help-5.15.11-1.fc40.i686                                     
  qt5-rpm-macros-5.15.11-1.fc40.noarch                                          
  rav1e-libs-0.6.6-4.fc40.i686                                                  
  rhash-1.4.3-3.fc39.i686                                                       
  rsvg-pixbuf-loader-2.57.0-3.fc40.i686                                         
  shared-mime-info-2.3-2.fc40.i686                                              
  spglib-2.0.2-3.fc39.i686                                                      
  spglib-devel-2.0.2-3.fc39.i686                                                
  svt-av1-libs-1.4.1-3.fc39.i686                                                
  tzdata-2023c-4.fc40.noarch                                                    
  urw-base35-bookman-fonts-20200910-18.fc39.noarch                              
  urw-base35-c059-fonts-20200910-18.fc39.noarch                                 
  urw-base35-d050000l-fonts-20200910-18.fc39.noarch                             
  urw-base35-fonts-20200910-18.fc39.noarch                                      
  urw-base35-fonts-common-20200910-18.fc39.noarch                               
  urw-base35-gothic-fonts-20200910-18.fc39.noarch                               
  urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch                       
  urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch                         
  urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch                          
  urw-base35-p052-fonts-20200910-18.fc39.noarch                                 
  urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch                  
  urw-base35-z003-fonts-20200910-18.fc39.noarch                                 
  vim-filesystem-2:9.0.2153-1.fc40.noarch                                       
  vulkan-headers-1.3.268.0-1.fc40.noarch                                        
  vulkan-loader-1.3.268.0-1.fc40.i686                                           
  vulkan-loader-devel-1.3.268.0-1.fc40.i686                                     
  xapian-core-libs-1.4.23-1.fc39.i686                                           
  xcb-util-0.4.1-3.fc39.i686                                                    
  xcb-util-image-0.4.1-3.fc39.i686                                              
  xcb-util-keysyms-0.4.1-3.fc39.i686                                            
  xcb-util-renderutil-0.3.10-3.fc39.i686                                        
  xcb-util-wm-0.4.2-3.fc39.i686                                                 
  xkeyboard-config-2.40-2.fc40.noarch                                           
  xml-common-0.6.3-62.fc40.noarch                                               
  xorg-x11-proto-devel-2023.2-3.fc40.noarch                                     
  zlib-devel-1.2.13-5.fc40.i686                                                 

Complete!
Finish: build setup for avogadro2-libs-1.98.1-1.fc40.src.rpm
Start: rpmbuild avogadro2-libs-1.98.1-1.fc40.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1699056000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dQNMnm
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf avogadrolibs-1.98.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.98.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd avogadrolibs-1.98.1
+ rm -rf /builddir/build/BUILD/avogadrolibs-1.98.1-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/avogadrolibs-1.98.1-SPECPARTS
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogenerators-1.98.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ tar -xf /builddir/build/SOURCES/molecules-1.98.0.tar.gz
+ mv molecules-1.98.0 molecules
+ tar -xf /builddir/build/SOURCES/crystals-1.98.0.tar.gz
+ mv crystals-1.98.0 crystals
+ mv molecules/LICENSE molecules/LICENSE-molecules
Patch #0 (avogadro2-libs-set_pythonpath.patch):
+ echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0
patching file avogadro/qtplugins/quantuminput/CMakeLists.txt
Hunk #1 succeeded at 34 (offset -7 lines).
patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -4 lines).
Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):
+ echo 'Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0
patching file avogadro/qtplugins/insertfragment/CMakeLists.txt
Hunk #1 succeeded at 11 (offset -2 lines).
+ mv avogenerators-1.98.0 avogadrogenerators
+ mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md
+ sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt
+ mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ox3Xc8
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd avogadrolibs-1.98.1
+ mkdir -p build
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.12 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DSPGLIB_LIBRARY:FILEPATH=/usr/lib/libsymspg.so -DSPGLIB_INCLUDE_DIR:PATH=/usr/include/spglib -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF
-- The C compiler identification is GNU 13.2.1
-- The CXX compiler identification is GNU 13.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Could not use git to determine source version, using version 1.98.1
-- Found Eigen3: /usr/include/eigen3 (found version "3.4.0") 
-- Found SPGLIB: /usr/include/spglib  
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found HDF5: /usr/lib/libhdf5.so (found version "1.12.1") found components: C 
-- Found MMTF: /usr/include  
-- Found OpenGL: /usr/lib/libOpenGL.so   
-- Found GLEW: /usr/include (found version "2.2.0") 
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.1", minimum required is "3") 
We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py
We have /builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/terachem.py
-- Found LibArchive: /usr/lib/libarchive.so (found version "3.7.2") 
-- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot 
-- Configuring done (1.8s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    ENABLE_GLSL
    ENABLE_PYTHON
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
    USE_BOOST_PYTHON
    USE_MOLEQUEUE


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In file included from /usr/include/eigen3/Eigen/Core:257,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:8:
In member function ‘Eigen::internal::mul_assign_op<double, double>::assignCoeff(double&, double const&) const’,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeff(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeffByOuterInner(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16,
    inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35,
    inlined from ‘Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92,
    inlined from ‘Eigen::internal::call_dense_assignment_loop<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37,
    inlined from ‘Eigen::internal::Assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from ‘Eigen::internal::call_assignment_no_alias<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from ‘Eigen::internal::call_assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&, Eigen::internal::enable_if<!Eigen::internal::evaluator_assume_aliasing<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator_traits<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27,
    inlined from ‘Eigen::DenseBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:113:18:
/usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
   92 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; }
      |                                                                                                    ~~^~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(double &)&pos3d + 16]’ was declared here
   70 |   Vector3 pos3d;
      |           ^~~~~
In file included from /usr/include/c++/13/istream:41,
                 from /usr/include/c++/13/sstream:40,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:6:
In member function ‘std::basic_ostream<char, std::char_traits<char> >::operator<<(double)’,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:173:76:
/usr/include/c++/13/ostream:223:25: warning: ‘MEM[(Scalar &)&fpos3d]’ may be used uninitialized [-Wmaybe-uninitialized]
  223 |       { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d]’ was declared here
   71 |   Vector3 fpos3d;
      |           ^~~~~~
In member function ‘std::basic_ostream<char, std::char_traits<char> >::operator<<(double)’,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:181:76:
/usr/include/c++/13/ostream:223:25: warning: ‘MEM[(Scalar &)&fpos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
  223 |       { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 8]’ was declared here
   71 |   Vector3 fpos3d;
      |           ^~~~~~
In member function ‘std::basic_ostream<char, std::char_traits<char> >::operator<<(double)’,
    inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:189:76:
/usr/include/c++/13/ostream:223:25: warning: ‘MEM[(Scalar &)&fpos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
  223 |       { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 16]’ was declared here
   71 |   Vector3 fpos3d;
      |           ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[  3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/cube.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/cube.cpp.o -MF CMakeFiles/Core.dir/cube.cpp.o.d -o CMakeFiles/Core.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[  3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -MF CMakeFiles/Core.dir/crystaltools.cpp.o.d -o CMakeFiles/Core.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp
In file included from /usr/include/c++/13/vector:66,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:6:
In member function ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::resize(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::resize(unsigned int const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:177:19,
    inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:676:16,
    inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:666:6:
/usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
 1034 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72:
/usr/include/c++/13/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’:
/usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > > >, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  529 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:676:16: note: ‘<anonymous>’ declared here
  676 |   output.resize(coords.size());
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In member function ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::resize(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::resize(unsigned int const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:177:19,
    inlined from ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:647:16,
    inlined from ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:640:6:
/usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
 1034 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)’:
/usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > > >, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  529 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.cpp:647:16: note: ‘<anonymous>’ declared here
  647 |   coords.resize(molecule.atomCount());
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::removeEdge(unsigned int, unsigned int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:311:5: warning: ‘edgeIndex’ may be used uninitialized [-Wmaybe-uninitialized]
  311 |     if (m_edgeMap[b][i] == edgeIndex) {
      |     ^~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:299:10: note: ‘edgeIndex’ was declared here
  299 |   size_t edgeIndex;
      |          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::swapEdgeIndices(unsigned int, unsigned int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:421:17: warning: ‘MEM[(unsigned int * &)&changeTo2]’ may be used uninitialized [-Wmaybe-uninitialized]
  421 |   *changeTo2[0] = edgeIndex2;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:392:26: note: ‘MEM[(unsigned int * &)&changeTo2]’ was declared here
  392 |   std::array<size_t*, 2> changeTo2;
      |                          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:422:17: warning: ‘MEM[(unsigned int * &)&changeTo2 + 4]’ may be used uninitialized [-Wmaybe-uninitialized]
  422 |   *changeTo2[1] = edgeIndex2;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:392:26: note: ‘MEM[(unsigned int * &)&changeTo2 + 4]’ was declared here
  392 |   std::array<size_t*, 2> changeTo2;
      |                          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:423:17: warning: ‘MEM[(unsigned int * &)&changeTo1]’ may be used uninitialized [-Wmaybe-uninitialized]
  423 |   *changeTo1[0] = edgeIndex1;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:405:26: note: ‘MEM[(unsigned int * &)&changeTo1]’ was declared here
  405 |   std::array<size_t*, 2> changeTo1;
      |                          ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:424:17: warning: ‘MEM[(unsigned int * &)&changeTo1 + 4]’ may be used uninitialized [-Wmaybe-uninitialized]
  424 |   *changeTo1[1] = edgeIndex1;
      |   ~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/graph.cpp:405:26: note: ‘MEM[(unsigned int * &)&changeTo1 + 4]’ was declared here
  405 |   std::array<size_t*, 2> changeTo1;
      |                          ^~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o -MF CMakeFiles/Core.dir/layermanager.cpp.o.d -o CMakeFiles/Core.dir/layermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o -MF CMakeFiles/Core.dir/mesh.cpp.o.d -o CMakeFiles/Core.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.h:15,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Core::Mesh::smooth(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp:189:46:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.195304].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp: In member function ‘Avogadro::Core::Mesh::smooth(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mesh.cpp:189:46: note: ‘<anonymous>’ declared here
  189 |   Array<Vector3> planarList(m_vertices.size());
      |                                              ^
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o -MF CMakeFiles/Core.dir/mutex.cpp.o.d -o CMakeFiles/Core.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/mutex.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o -MF CMakeFiles/Core.dir/nameatomtyper.cpp.o.d -o CMakeFiles/Core.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/nameatomtyper.cpp
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[  5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o -MF CMakeFiles/Core.dir/neighborperceiver.cpp.o.d -o CMakeFiles/Core.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.cpp
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[  4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/spglib -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o -MF CMakeFiles/Core.dir/molecule.cpp.o.d -o CMakeFiles/Core.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h: In copy constructor ‘Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:793:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder]
  793 |   Array<unsigned char> m_atomicNumbers;
      |                        ^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786:19: warning:   ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder]
  786 |   Eigen::VectorXd m_frozenAtomMask;
      |                   ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:35:1: warning:   when initialized here [-Wreorder]
   35 | Molecule::Molecule(const Molecule& other)
      | ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h: In constructor ‘Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:793:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder]
  793 |   Array<unsigned char> m_atomicNumbers;
      |                        ^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786:19: warning:   ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder]
  786 |   Eigen::VectorXd m_frozenAtomMask;
      |                   ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:77:1: warning:   when initialized here [-Wreorder]
   77 | Molecule::Molecule(Molecule&& other) noexcept
      | ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtom(Avogadro::Index, bool)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:281:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare]
  281 |   if (m_frozenAtomMask.rows() != 3*m_atomicNumbers.size())
      |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:285:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
  285 |   if (m_frozenAtomMask.rows() > size)
      |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:286:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
  286 |     for (unsigned int i = size; i < m_frozenAtomMask.rows(); ++i)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:290:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
  290 |   if (atomId * 3 <= m_frozenAtomMask.rows() - 3) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp: In member function ‘bool Avogadro::Core::Molecule::frozenAtom(Avogadro::Index) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:300:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
  300 |   if (atomId * 3 <= m_frozenAtomMask.rows() - 3) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtomAxis(Avogadro::Index, int, bool)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:312:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare]
  312 |   if (m_frozenAtomMask.rows() != 3*m_atomicNumbers.size())
      |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:316:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
  316 |   if (m_frozenAtomMask.rows() > size)
      |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:317:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
  317 |     for (unsigned int i = size; i < m_frozenAtomMask.rows(); ++i)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.cpp:321:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
  321 |   if (atomId * 3 <= m_frozenAtomMask.rows() - 3) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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  162 | } // namespace Avogadro
      | ^
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.98.1 CMakeFiles/Core.dir/angleiterator.cpp.o CMakeFiles/Core.dir/atomutilities.cpp.o CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o CMakeFiles/Core.dir/crystaltools.cpp.o CMakeFiles/Core.dir/cube.cpp.o CMakeFiles/Core.dir/elements.cpp.o CMakeFiles/Core.dir/dihedraliterator.cpp.o CMakeFiles/Core.dir/gaussianset.cpp.o CMakeFiles/Core.dir/gaussiansettools.cpp.o CMakeFiles/Core.dir/graph.cpp.o CMakeFiles/Core.dir/layer.cpp.o CMakeFiles/Core.dir/layermanager.cpp.o CMakeFiles/Core.dir/mesh.cpp.o CMakeFiles/Core.dir/molecule.cpp.o CMakeFiles/Core.dir/mutex.cpp.o CMakeFiles/Core.dir/nameatomtyper.cpp.o CMakeFiles/Core.dir/neighborperceiver.cpp.o CMakeFiles/Core.dir/residue.cpp.o CMakeFiles/Core.dir/ringperceiver.cpp.o CMakeFiles/Core.dir/secondarystructure.cpp.o CMakeFiles/Core.dir/slaterset.cpp.o CMakeFiles/Core.dir/slatersettools.cpp.o CMakeFiles/Core.dir/spacegroups.cpp.o CMakeFiles/Core.dir/symbolatomtyper.cpp.o CMakeFiles/Core.dir/unitcell.cpp.o CMakeFiles/Core.dir/variantmap.cpp.o CMakeFiles/Core.dir/version.cpp.o CMakeFiles/Core.dir/sharedmutex.cpp.o CMakeFiles/Core.dir/avospglib.cpp.o  -Wl,-rpath,:::::::: /usr/lib/libsymspg.so 
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  162 | } // namespace Avogadro
      | ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o -MF CMakeFiles/Calc.dir/chargemodel.cpp.o.d -o CMakeFiles/Calc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.cpp: In member function ‘virtual double Avogadro::Calc::ChargeModel::potential(Avogadro::Core::Molecule&, const Avogadro::Vector3&) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.cpp:38:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, -1> >::Index’ {aka ‘int’} [-Wsign-compare]
   38 |   for (unsigned int i = 0; i < charges.size(); ++i) {
      |                            ~~^~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o -MF CMakeFiles/Calc.dir/energycalculator.cpp.o.d -o CMakeFiles/Calc.dir/energycalculator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.cpp: In member function ‘void Avogadro::Calc::EnergyCalculator::cleanGradients(cppoptlib::Problem<double>::TVector&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.cpp:29:21: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   29 |   if (m_mask.rows() == size)
      |       ~~~~~~~~~~~~~~^~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -MF CMakeFiles/Calc.dir/lennardjones.cpp.o.d -o CMakeFiles/Calc.dir/lennardjones.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h: In constructor ‘Avogadro::Calc::LennardJones::LennardJones()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:56:7: warning: ‘Avogadro::Calc::LennardJones::m_exponent’ will be initialized after [-Wreorder]
   56 |   int m_exponent;
      |       ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:52:19: warning:   ‘Avogadro::Core::UnitCell* Avogadro::Calc::LennardJones::m_cell’ [-Wreorder]
   52 |   Core::UnitCell* m_cell;
      |                   ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:14:1: warning:   when initialized here [-Wreorder]
   14 | LennardJones::LennardJones()
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Calc::LennardJones::m_cell’ will be initialized after [-Wreorder]
   52 |   Core::UnitCell* m_cell;
      |                   ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:51:19: warning:   ‘Avogadro::Core::Molecule* Avogadro::Calc::LennardJones::m_molecule’ [-Wreorder]
   51 |   Core::Molecule* m_molecule;
      |                   ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:14:1: warning:   when initialized here [-Wreorder]
   14 | LennardJones::LennardJones()
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::setMolecule(Avogadro::Core::Molecule*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:46:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   46 |   for (Index i = 0; i < numAtoms; ++i) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:55:29: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   55 |     for (Index j = i + 1; j < numAtoms; ++j) {
      |                           ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp: In member function ‘virtual Avogadro::Real Avogadro::Calc::LennardJones::value(const Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:84:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   84 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:86:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   86 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   98 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:100:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  100 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:128:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  128 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:130:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  130 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:154:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  154 |     for (Index i = 0; i < numAtoms; ++i) {
      |                       ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.cpp:156:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  156 |       for (Index j = i + 1; j < numAtoms; ++j) {
      |                             ~~^~~~~~~~~~
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In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp:28:33:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.203552].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp: In member function ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.cpp:28:33: note: ‘<anonymous>’ declared here
   28 |   Array<Vector3f> verts(numVerts);
      |                                 ^
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[  9%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o -MF CMakeFiles/IO.dir/cmlformat.cpp.o.d -o CMakeFiles/IO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/cmlformat.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -MF CMakeFiles/Rendering.dir/arcstrip.cpp.o.d -o CMakeFiles/Rendering.dir/arcstrip.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float, float)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp:23:39:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.204960].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp: In member function ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float, float, float)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.cpp:23:39: note: ‘<anonymous>’ declared here
   23 |   Core::Array<Vector3f> verts(numVerts);
      |                                       ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/Rendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o -MF CMakeFiles/IO.dir/dcdformat.cpp.o.d -o CMakeFiles/IO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/dcdformat.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o -MF CMakeFiles/IO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/IO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/Rendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp
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In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:46:21:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert1].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here
   43 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:46:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here
   43 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:46:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here
   43 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:51:21:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert2].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here
   48 |     ColorNormalVertex vert2;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:51:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here
   48 |     ColorNormalVertex vert2;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:51:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here
   48 |     ColorNormalVertex vert2;
      |                       ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o -MF CMakeFiles/IO.dir/gromacsformat.cpp.o.d -o CMakeFiles/IO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/gromacsformat.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o -MF CMakeFiles/IO.dir/mdlformat.cpp.o.d -o CMakeFiles/IO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/mdlformat.cpp
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[ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -MF CMakeFiles/Rendering.dir/camera.cpp.o.d -o CMakeFiles/Rendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.cpp
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[ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -MF CMakeFiles/Rendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:6:
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:63:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here
   59 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:63:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here
   59 |     ColorNormalVertex vert1;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:69:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here
   65 |     ColorNormalVertex vert2;
      |                       ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:69:21:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform<float, 3, 2, 0> const&, Eigen::Transform<float, 3, 2, 0> const&, bool) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here
   65 |     ColorNormalVertex vert2;
      |                       ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:253,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:12:
In member function ‘Eigen::internal::scalar_difference_op<float, float>::operator()(float const&, float const&) const’,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22,
    inlined from ‘Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const>, Eigen::internal::IndexBased, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 3, 2>::run<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&, Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::redux<Eigen::internal::scalar_sum_op<float, float> >(Eigen::internal::scalar_sum_op<float, float> const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31,
    inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:97:45:
/usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous]’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
      |                                                                                                                                  ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous]’ was declared here
   87 |   Vector3f previous;
      |            ^~~~~~~~
In member function ‘Eigen::internal::scalar_difference_op<float, float>::operator()(float const&, float const&) const’,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22,
    inlined from ‘Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const>, Eigen::internal::IndexBased, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 3, 2>::run<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&, Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::redux<Eigen::internal::scalar_sum_op<float, float> >(Eigen::internal::scalar_sum_op<float, float> const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31,
    inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:97:45:
/usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 4]’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
      |                                                                                                                                  ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 4]’ was declared here
   87 |   Vector3f previous;
      |            ^~~~~~~~
In member function ‘Eigen::internal::scalar_difference_op<float, float>::operator()(float const&, float const&) const’,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22,
    inlined from ‘Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const>, Eigen::internal::IndexBased, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96,
    inlined from ‘Eigen::internal::redux_novec_unroller<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<float, float>, Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >, 3, 2>::run<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> > const&, Eigen::internal::scalar_sum_op<float, float> const&, Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::redux<Eigen::internal::scalar_sum_op<float, float> >(Eigen::internal::scalar_sum_op<float, float> const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46,
    inlined from ‘Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const, Eigen::Matrix<float, 3, 1, 0, 3, 1> const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31,
    inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:97:45:
/usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 8]’ may be used uninitialized [-Wmaybe-uninitialized]
  359 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
      |                                                                                                                                  ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 8]’ was declared here
   87 |   Vector3f previous;
      |            ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o -MF CMakeFiles/IO.dir/vaspformat.cpp.o.d -o CMakeFiles/IO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/vaspformat.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/Rendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:9:
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:119:35:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:112:25: note: ‘vert’ declared here
  112 |       ColorNormalVertex vert(itCylinder->color, -direction, position1);
      |                         ^~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:119:35:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:112:25: note: ‘vert’ declared here
  112 |       ColorNormalVertex vert(itCylinder->color, -direction, position1);
      |                         ^~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:122:35:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:113:25: note: ‘vert2’ declared here
  113 |       ColorNormalVertex vert2(itCylinder->color2, -direction, position1);
      |                         ^~~~~
In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorNormalVertex>::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorNormalVertex> >::construct<Avogadro::Rendering::ColorNormalVertex, Avogadro::Rendering::ColorNormalVertex const&>(std::allocator<Avogadro::Rendering::ColorNormalVertex>&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorNormalVertex, std::allocator<Avogadro::Rendering::ColorNormalVertex> >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:122:35:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized]
   67 | struct ColorNormalVertex
      |        ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.cpp:113:25: note: ‘vert2’ declared here
  113 |       ColorNormalVertex vert2(itCylinder->color2, -direction, position1);
      |                         ^~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o -MF CMakeFiles/IO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/IO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/turbomoleformat.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -MF CMakeFiles/Rendering.dir/plyvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/plyvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/Rendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.cpp
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[ 18%] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o -MF CMakeFiles/IO.dir/lammpsformat.cpp.o.d -o CMakeFiles/IO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp: In member function ‘Avogadro::Io::LammpsTrajectoryFormat::read(std::basic_istream<char, std::char_traits<char> >&, Avogadro::Core::Molecule&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp:268:5: warning: ‘numAtoms2’ may be used uninitialized [-Wmaybe-uninitialized]
  268 |     if (numAtoms2 != numAtoms) {
      |     ^~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.cpp:231:10: note: ‘numAtoms2’ was declared here
  231 |   size_t numAtoms2;
      |          ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -MF CMakeFiles/Rendering.dir/quad.cpp.o.d -o CMakeFiles/Rendering.dir/quad.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp:20:26:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.206010].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp: In member function ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.cpp:20:26: note: ‘<anonymous>’ declared here
   20 |   Array<Vector3f> verts(4);
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -MF CMakeFiles/Rendering.dir/quadoutline.cpp.o.d -o CMakeFiles/Rendering.dir/quadoutline.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp:16:26:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.204669].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp: In member function ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, float)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.cpp:16:26: note: ‘<anonymous>’ declared here
   16 |   Array<Vector3f> verts(5);
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 19%] Building CXX object avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/struct -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/IO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/IO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o -MF CMakeFiles/Rendering.dir/scene.cpp.o.d -o CMakeFiles/Rendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o -MF CMakeFiles/Rendering.dir/shader.cpp.o.d -o CMakeFiles/Rendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:9:
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:94:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:92:26: note: ‘vert’ declared here
   92 |       ColorTextureVertex vert(itSphere->center, itSphere->color,
      |                          ^~~~
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:96:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:92:26: note: ‘vert’ declared here
   92 |       ColorTextureVertex vert(itSphere->center, itSphere->color,
      |                          ^~~~
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:98:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:92:26: note: ‘vert’ declared here
   92 |       ColorTextureVertex vert(itSphere->center, itSphere->color,
      |                          ^~~~
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:100:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.cpp:92:26: note: ‘vert’ declared here
   92 |       ColorTextureVertex vert(itSphere->center, itSphere->color,
      |                          ^~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:9:
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1156:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here
 1150 |       ColorTextureVertex vert(
      |                          ^~~~
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1158:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here
 1150 |       ColorTextureVertex vert(
      |                          ^~~~
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1160:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here
 1150 |       ColorTextureVertex vert(
      |                          ^~~~
In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’,
    inlined from ‘std::__new_allocator<Avogadro::Rendering::ColorTextureVertex>::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::Rendering::ColorTextureVertex> >::construct<Avogadro::Rendering::ColorTextureVertex, Avogadro::Rendering::ColorTextureVertex const&>(std::allocator<Avogadro::Rendering::ColorTextureVertex>&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::Rendering::ColorTextureVertex, std::allocator<Avogadro::Rendering::ColorTextureVertex> >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1154:31:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized]
   40 | struct ColorTextureVertex
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here
 1150 |       ColorTextureVertex vert(
      |                          ^~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/IO.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.98.1 CMakeFiles/IO.dir/cjsonformat.cpp.o CMakeFiles/IO.dir/cmlformat.cpp.o CMakeFiles/IO.dir/dcdformat.cpp.o CMakeFiles/IO.dir/fileformat.cpp.o CMakeFiles/IO.dir/fileformatmanager.cpp.o CMakeFiles/IO.dir/gromacsformat.cpp.o CMakeFiles/IO.dir/mdlformat.cpp.o CMakeFiles/IO.dir/vaspformat.cpp.o CMakeFiles/IO.dir/pdbformat.cpp.o CMakeFiles/IO.dir/xyzformat.cpp.o CMakeFiles/IO.dir/trrformat.cpp.o CMakeFiles/IO.dir/turbomoleformat.cpp.o CMakeFiles/IO.dir/lammpsformat.cpp.o CMakeFiles/IO.dir/hdf5dataformat.cpp.o CMakeFiles/IO.dir/mmtfformat.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: /usr/lib/libhdf5.so ../../lib/libAvogadroCore.so.1.98.1 ../../thirdparty/libstruct.a ../../thirdparty/libpugixml.a 
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp: In member function ‘void Avogadro::QuantumIO::GaussianFchk::processLine(std::istream&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:194:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  194 |     for (unsigned int i = 0; i < m_normalModes; ++i) {
      |                              ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:211:23: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  211 |     if (tmpVec.size() == m_numAtoms * 3 * m_normalModes) {
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.cpp:212:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  212 |       for (unsigned int i = 0; i < m_normalModes; ++i) {
      |                                ~~^~~~~~~~~~~~~~~
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  214 |         for (unsigned int j = 0; j < m_numAtoms; ++j) {
      |                                  ~~^~~~~~~~~~~~
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AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h"
AutoGen: Parsing "SRC:/build/avogadro/qtgui/avogadroqtguiexport.h"
AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp"
AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/backgroundfileformat.h
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementtranslator.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacewidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictableview.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h"
/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d"
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/usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc.d"
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AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenUsed.txt"
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/lib/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/qtgui.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -MF CMakeFiles/QuantumIO.dir/genericoutput.cpp.o.d -o CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o -MF CMakeFiles/QuantumIO.dir/molden.cpp.o.d -o CMakeFiles/QuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.cpp
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[ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/QtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementitem_p.cpp.o -MF CMakeFiles/QtGui.dir/elementitem_p.cpp.o.d -o CMakeFiles/QtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp
In file included from /usr/include/eigen3/Eigen/Core:257,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/matrix.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:13,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp:8:
In member function ‘Eigen::internal::mul_assign_op<double, double>::assignCoeff(double&, double const&) const’,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeff(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26,
    inlined from ‘Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>::assignCoeffByOuterInner(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16,
    inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35,
    inlined from ‘Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >, Eigen::internal::mul_assign_op<double, double>, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92,
    inlined from ‘Eigen::internal::call_dense_assignment_loop<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37,
    inlined from ‘Eigen::internal::Assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from ‘Eigen::internal::call_assignment_no_alias<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from ‘Eigen::internal::call_assignment<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::mul_assign_op<double, double> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::internal::mul_assign_op<double, double> const&, Eigen::internal::enable_if<!Eigen::internal::evaluator_assume_aliasing<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >, Eigen::internal::evaluator_traits<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27,
    inlined from ‘Eigen::DenseBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28,
    inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream<char, std::char_traits<char> >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp:138:21:
/usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&position + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
   92 |   EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; }
      |                                                                                                    ~~^~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream<char, std::char_traits<char> >&, Avogadro::Core::Molecule&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM[(double &)&position + 16]’ was declared here
  133 |       Vector3 position;
      |               ^~~~~~~~
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp: In member function ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:651:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  651 |           while (idx < orcaOrbitals.size()) {
      |                  ~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:654:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  654 |                 if (idx + 1 >= columns[i].size())
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:660:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  660 |                 if (idx + 1 >= columns[i].size())
      |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:730:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  730 |             while (idx < orcaOrbitals.size()) {
      |                    ~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:733:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  733 |                   if (idx + 1 >= columns[i].size())
      |                       ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:739:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  739 |                   if (idx + 1 >= columns[i].size())
      |                       ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:118:9: warning: variable ‘vibScaling’ set but not used [-Wunused-but-set-variable]
  118 |   float vibScaling = 1.0f;
      |         ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:398:39: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
  398 |           m_vibDisplacements[i].resize(m_atomNums.size());
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:174:8: note: by argument 3 of type ‘const struct ValueType &’ to ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::resize(unsigned int const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  174 |   void resize(const size_t& sz, const ValueType& t = ValueType())
      |        ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:398:39: note: ‘<anonymous>’ declared here
  398 |           m_vibDisplacements[i].resize(m_atomNums.size());
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:400:44: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
  400 |             m_vibDisplacements[i].push_back(Eigen::Vector3d());
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:247:8: note: by argument 2 of type ‘const struct ValueType &’ to ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::push_back(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ declared here
  247 |   void push_back(const ValueType& v)
      |        ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.cpp:400:61: note: ‘<anonymous>’ declared here
  400 |             m_vibDisplacements[i].push_back(Eigen::Vector3d());
      |                                                             ^
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[ 33%] Linking CXX shared library ../../lib/libAvogadroQtGui.so
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtGui.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.98.1 CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o CMakeFiles/QtGui.dir/colorbutton.cpp.o CMakeFiles/QtGui.dir/containerwidget.cpp.o CMakeFiles/QtGui.dir/customelementdialog.cpp.o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o CMakeFiles/QtGui.dir/elementitem_p.cpp.o CMakeFiles/QtGui.dir/elementtranslator.cpp.o CMakeFiles/QtGui.dir/extensionplugin.cpp.o CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o CMakeFiles/QtGui.dir/generichighlighter.cpp.o CMakeFiles/QtGui.dir/hydrogentools.cpp.o CMakeFiles/QtGui.dir/interfacescript.cpp.o CMakeFiles/QtGui.dir/interfacewidget.cpp.o CMakeFiles/QtGui.dir/jsonwidget.cpp.o CMakeFiles/QtGui.dir/layermodel.cpp.o CMakeFiles/QtGui.dir/rwlayermanager.cpp.o CMakeFiles/QtGui.dir/meshgenerator.cpp.o CMakeFiles/QtGui.dir/molecule.cpp.o CMakeFiles/QtGui.dir/moleculemodel.cpp.o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o CMakeFiles/QtGui.dir/periodictableview.cpp.o CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o CMakeFiles/QtGui.dir/pythonscript.cpp.o CMakeFiles/QtGui.dir/rwmolecule.cpp.o CMakeFiles/QtGui.dir/sceneplugin.cpp.o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o CMakeFiles/QtGui.dir/scriptloader.cpp.o CMakeFiles/QtGui.dir/toolplugin.cpp.o CMakeFiles/QtGui.dir/utilities.cpp.o CMakeFiles/QtGui.dir/viewfactory.cpp.o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/libAvogadroIO.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.98.1 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target QtGui
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target QtOpenGL
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h"
AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h"
AutoGen: Parsing "SRC:/build/avogadro/qtopengl/avogadroqtopenglexport.h"
AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp"
AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/activeobjects.h
AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target QtOpenGL_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target QTAIMScenePlugin
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimengine.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target QTAIMScenePlugin_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target MoleQueue
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h"
AutoGen: Parsing "SRC:/build/avogadro/molequeue/avogadromolequeueexport.h"
AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp"
AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h"
/usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Built target MoleQueue_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 33%] Automatic MOC for target ThreeDMol
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmol.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmoldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target ThreeDMol_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target ApplyColors
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors/applycolors.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target ApplyColors_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Bonding
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding/bonding.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/BondingPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Bonding_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Cartoons
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons/cartoons.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Cartoons_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Centroid
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/centroid/centroid.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid/centroid.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Centroid_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target CopyPaste
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste/copypaste.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target CopyPaste_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target CrystalScene
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target CrystalScene_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Crystal
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystal.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/importcrystaldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/supercelldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/unitcelldialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/volumescalingdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Crystal_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target CustomElements
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements/customelements.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target CustomElements_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target FetchPDB
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb/fetchpdb.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target FetchPDB_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Hydrogens
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens/hydrogens.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Hydrogens_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Forcefield
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefield.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefielddialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Forcefield_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target ImportPQR
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/importpqr.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrrequest.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target ImportPQR_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target NucleicInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna/insertdna.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target NucleicInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target LineFormatInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target LineFormatInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target Label
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/label.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target Label_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Automatic MOC for target NetworkDatabases
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases/networkdatabases.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Built target NetworkDatabases_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Automatic MOC for target PLY
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ply/PLYPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ply/ply.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply/ply.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ply/PLYPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLYPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Built target PLY_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Automatic MOC for target OpenBabel
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obprocess.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obforcefielddialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/openbabel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obfileformat.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Built target OpenBabel_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Automatic MOC for target POVRay
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray/povray.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRayPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 35%] Built target POVRay_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target Select
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select/select.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/SelectPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target Select_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target PropertyTables
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertymodel.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertytables.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target PropertyTables_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target SpaceGroup
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup/spacegroup.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target SpaceGroup_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target LammpsInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target LammpsInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target OpenMMInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target OpenMMInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target CoordinateEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditor.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target CoordinateEditor_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target InsertFragment
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragmentdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target InsertFragment_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target MolecularProperties
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularproperties.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target MolecularProperties_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target Spectra
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/spectra.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/spectra.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/vibrationdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target Spectra_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target VRML
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml/vrml.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target VRML_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target commands
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts/command.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target commands_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target ScriptCharges
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptcharges.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Built target ScriptCharges_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 36%] Automatic MOC for target ScriptFileFormats
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats/scriptfileformats.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target ScriptFileFormats_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target PluginDownloader
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/downloaderwidget.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/plugindownloader.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target PluginDownloader_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target BallStick
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick/ballandstick.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target BallStick_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Force
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force/force.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/ForcePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target Force_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target CloseContacts
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts/closecontacts.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target CloseContacts_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Licorice
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice/licorice.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target Licorice_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Meshes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target Meshes_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target NonCovalent
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent/noncovalent.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target NonCovalent_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target VanDerWaals
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals/vanderwaals.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target VanDerWaals_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Automatic MOC for target Wireframe
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe/wireframe.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Built target Wireframe_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Automatic MOC for target QTAIMExtension
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimextension.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Built target QTAIMExtension_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Generating ui_molequeuewidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Generating ui_inputgeneratordialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Generating ui_inputgeneratorwidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Generating ui_molequeuedialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.98.1 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratorwidget.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimengine.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmol.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.cpp
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[ 43%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol/3dmoldialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o -MF CMakeFiles/MoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/client.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp
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[ 44%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jobobject.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors/applycolors.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Built target ApplyColors
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 45%] Automatic MOC for target AlignTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/aligntool/aligntool.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 45%] Built target AlignTool_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Automatic MOC for target BondCentric
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool/bondcentrictool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt"
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[ 44%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/MoleQueue.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.98.1 CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/MoleQueue.dir/batchjob.cpp.o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/MoleQueue.dir/client/client.cpp.o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/libAvogadroQtGui.so.1.98.1 ../../lib/libAvogadroIO.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 /usr/lib/libQt5Network.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.98.1 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so
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[ 46%] Built target BondCentric_autogen
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/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding/bondingdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color="
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[ 46%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 46%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 46%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding/bonding.cpp
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[ 46%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/BondingPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons/cartoons.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o -MF CMakeFiles/Centroid.dir/centroid.cpp.o.d -o CMakeFiles/Centroid.dir/centroid.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid/centroid.cpp
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[ 48%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -MF CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o.d -o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp
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[ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Centroid.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/cmake -P CMakeFiles/Centroid.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_link_script CMakeFiles/Centroid.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Centroid.a CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o CMakeFiles/Centroid.dir/centroid.cpp.o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Centroid.a
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[ 48%] Built target Centroid
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[ 48%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp
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[ 49%] Generating ui_volumescalingdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/volumescalingdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/importcrystaldialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/supercelldialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/unitcelldialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color="
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[ 48%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste/copypaste.cpp
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[ 49%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a
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[ 49%] Built target CopyPaste
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystal.cpp
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[ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
In file included from /usr/include/c++/13/vector:66,
                 from /usr/include/c++/13/functional:64,
                 from /usr/include/eigen3/Eigen/Core:85,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp:6:
In member function ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::resize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::resize(unsigned int const&, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:177:19,
    inlined from ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp:79:17:
/usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘<anonymous>’ may be used uninitialized [-Wmaybe-uninitialized]
 1034 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72:
/usr/include/c++/13/bits/vector.tcc: In member function ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’:
/usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > > >, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ declared here
  529 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: note: ‘<anonymous>’ declared here
   79 |     strip.resize(2);
      |     ~~~~~~~~~~~~^~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/importcrystaldialog.cpp
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[ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp
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[ 50%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color="
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[ 50%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements/customelements.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Built target CustomElements
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Automatic MOC for target Editor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editor.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editortoolwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/EditorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Built target Editor_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/unitcelldialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb/fetchpdb.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Built target FetchPDB
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal/volumescalingdialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Automatic MOC for target Focus
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus/focus.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/FocusPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Built target Focus_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Generating ui_forcefielddialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/ui_forcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefielddialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -MF CMakeFiles/Forcefield.dir/forcefield.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefield.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::optimize()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  215 |     for (Index i = 0; i < 3 * n; ++i) {
      |                       ~~^~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:267:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  267 |       for (size_t i = 0; i < n; ++i) {
      |                          ~~^~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:265:12: warning: variable ‘isFinite’ set but not used [-Wunused-but-set-variable]
  265 |       bool isFinite = true;
      |            ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::freezeSelected()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:367:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  367 |   for (Index i = 0; i < numAtoms; ++i) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::unfreezeSelected()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:381:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  381 |   for (Index i = 0; i < numAtoms; ++i) {
      |                     ~~^~~~~~~~~~
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefield.cpp:22:
/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/avogadropython.h: At global scope:
/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable]
    2 | static const char *pythonInterpreterPath = "/usr/bin/python3";
      |                    ^~~~~~~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/importpqr.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -MF CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/forcefielddialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr/pqrwidget.cpp
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[ 54%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obmmenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::ProcessListener::ProcessListener(QProcess*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:61:8: warning: ‘Avogadro::QtPlugins::OBMMEnergy::ProcessListener::m_finished’ will be initialized after [-Wreorder]
   61 |   bool m_finished;
      |        ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:60:13: warning:   ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::ProcessListener::m_process’ [-Wreorder]
   60 |   QProcess* m_process;
      |             ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:23:3: warning:   when initialized here [-Wreorder]
   23 |   ProcessListener(QProcess* proc)
      |   ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.h: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::OBMMEnergy(const std::string&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.h:86:15: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_name’ will be initialized after [-Wreorder]
   86 |   std::string m_name;
      |               ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.h:81:13: warning:   ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::m_process’ [-Wreorder]
   81 |   QProcess* m_process;
      |             ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:65:1: warning:   when initialized here [-Wreorder]
   65 | OBMMEnergy::OBMMEnergy(const std::string& method)
      | ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::OBMMEnergy::value(const Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:261:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘int’} [-Wsign-compare]
  261 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBMMEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/obmmenergy.cpp:317:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘int’} [-Wsign-compare]
  317 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -MF CMakeFiles/Forcefield.dir/scriptenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.h: In constructor ‘Avogadro::QtPlugins::ScriptEnergy::ScriptEnergy(const QString&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.h:91:8: warning: ‘Avogadro::QtPlugins::ScriptEnergy::m_valid’ will be initialized after [-Wreorder]
   91 |   bool m_valid;
      |        ^~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.h:86:10: warning:   ‘Avogadro::QtPlugins::ScriptEnergy::Format Avogadro::QtPlugins::ScriptEnergy::m_inputFormat’ [-Wreorder]
   86 |   Format m_inputFormat;
      |          ^~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:29:1: warning:   when initialized here [-Wreorder]
   29 | ScriptEnergy::ScriptEnergy(const QString& scriptFileName_)
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::ScriptEnergy::value(const Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:116:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘int’} [-Wsign-compare]
  116 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::ScriptEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:149:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘int’} [-Wsign-compare]
  149 |   for (Index i = 0; i < x.size(); i += 3) {
      |                     ~~^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield/scriptenergy.cpp:176:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘int’} [-Wsign-compare]
  176 |       if (i > x.size())
      |           ~~^~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/label.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna/insertdna.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target NucleicInput
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 58%] Built target Label
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Generating ui_lineformatinputdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Automatic MOC for target LabelEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/labeleditor.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target LabelEditor_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Automatic MOC for target Manipulator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulator.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target Manipulator_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 59%] Automatic MOC for target MeasureTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 59%] Built target MeasureTool_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 59%] Automatic MOC for target Navigator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator/navigator.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 59%] Built target Navigator_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 60%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp
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[ 59%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinput.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 60%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases/networkdatabases.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp
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[ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a
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[ 61%] Built target NetworkDatabases
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/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend
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[ 61%] Generating ui_obforcefielddialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obforcefielddialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color="
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/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a
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[ 61%] Built target LineFormatInput
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Automatic MOC for target PlayerTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool/playertool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Built target PlayerTool_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 61%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o
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In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.h: In constructor ‘Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: ‘Avogadro::QtPlugins::OBCharges::m_identifier’ will be initialized after [-Wreorder]
   65 |   std::string m_identifier;
      |               ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning:   base ‘Avogadro::Calc::ChargeModel’ [-Wreorder]
   65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel()
      |                                                                             ^
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning:   when initialized here [-Wreorder]
   65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel()
      | ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::OBCharges::partialCharges(Avogadro::Core::Molecule&) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/obcharges.cpp:172:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
  172 |   for (unsigned int i = 0; i < charges.rows(); ++i) {
      |                            ~~^~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/POVRayPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel/openbabel.cpp
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[ 63%] Built target OpenBabel
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/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Automatic MOC for target ResetView
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview/resetview.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Built target ResetView_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertymodel.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select/select.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/SelectPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Built target Select
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Automatic MOC for target Selection
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Built target Selection_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h: In constructor ‘Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h:35:20: warning: ‘Avogadro::PropertyView::m_molecule’ will be initialized after [-Wreorder]
   35 |   QtGui::Molecule* m_molecule;
      |                    ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.h:34:16: warning:   ‘Avogadro::PropertyType Avogadro::PropertyView::m_type’ [-Wreorder]
   34 |   PropertyType m_type;
      |                ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:25:1: warning:   when initialized here [-Wreorder]
   25 | PropertyView::PropertyView(PropertyType type, QWidget* parent)
      | ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp: In member function ‘virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘unsigned int’} [-Wsign-compare]
  100 |       if (rowNum >= m_molecule->atomCount())
      |           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables/propertyview.cpp:105:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘unsigned int’} [-Wsign-compare]
  105 |       if (rowNum >= m_molecule->bondCount())
      |           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
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[ 64%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 64%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 65%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 65%] Built target PropertyTables
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/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Automatic MOC for target Surfaces
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/slatersetconcurrent.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfacedialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Built target Surfaces_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Generating ui_lammpsinputdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp
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[ 65%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup/spacegroup.cpp
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[ 66%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminputdialog.ui
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[ 66%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp
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[ 66%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp
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[ 66%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput/lammpsinput.cpp
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[ 66%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color="
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[ 66%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminputdialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp
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[ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp
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[ 66%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput/openmminput.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 67%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a
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[ 68%] Built target OpenMMInput
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/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend
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[ 68%] Generating ui_insertfragmentdialog.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragmentdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color="
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[ 68%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 67%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘void Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:413:15: warning: unused variable ‘index’ [-Wunused-variable]
  413 |           int index = tokenCursor.selectedText().toInt(&isInt);
      |               ^~~~~
In member function ‘__ct ’,
    inlined from ‘QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:793:13,
    inlined from ‘QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:293:13,
    inlined from ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:509:28:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: ‘atom.atomicNumber’ may be used uninitialized [-Wmaybe-uninitialized]
   93 | struct AtomStruct
      |        ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: ‘atom.atomicNumber’ was declared here
  341 |     AtomStruct atom;
      |                ^~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp
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[ 68%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor ‘Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:50:25: warning: ‘Avogadro::QtPlugins::InsertFragment::m_crystalDialog’ will be initialized after [-Wreorder]
   50 |   InsertFragmentDialog* m_crystalDialog;
      |                         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:49:25: warning:   ‘Avogadro::QtPlugins::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog’ [-Wreorder]
   49 |   InsertFragmentDialog* m_moleculeDialog;
      |                         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning:   when initialized here [-Wreorder]
   28 | InsertFragment::InsertFragment(QObject* parent_)
      | ^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: ‘Avogadro::QtPlugins::InsertFragment::m_reader’ will be initialized after [-Wreorder]
   55 |   Io::FileFormat* m_reader;
      |                   ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning:   ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule’ [-Wreorder]
   54 |   QtGui::Molecule* m_molecule;
      |                    ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning:   when initialized here [-Wreorder]
   28 | InsertFragment::InsertFragment(QObject* parent_)
      | ^~~~~~~~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 70%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularproperties.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a
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[ 70%] Built target InsertFragment
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/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color="
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/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target SVG
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
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/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVGPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt"
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/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/ui_vibrationdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/vibrationdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color="
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[ 70%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 71%] Built target MolecularProperties
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Automatic MOC for target TemplateTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetool.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetool.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetoolwidget.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Built target TemplateTool_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -MF CMakeFiles/Spectra.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/vibrationdialog.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -MF CMakeFiles/Spectra.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/vibrationmodel.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml/vrml.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Built target VRML
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Automatic MOC for target apbs
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbs.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsoutputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbsPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Built target apbs_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Automatic MOC for target Cp2kInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Built target Cp2kInput_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Automatic MOC for target GamessInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp"
AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamesshighlighter.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinput.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.h
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 72%] Built target GamessInput_autogen
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/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 72%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 72%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -MF CMakeFiles/Spectra.dir/spectra.cpp.o.d -o CMakeFiles/Spectra.dir/spectra.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra/spectra.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 73%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -MF CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o.d -o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Spectra.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -P CMakeFiles/Spectra.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/Spectra.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Spectra.a CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o CMakeFiles/Spectra.dir/spectra.cpp.o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Spectra.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 73%] Built target Spectra
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Automatic MOC for target QuantumInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput/quantuminput.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt"
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts/command.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -P CMakeFiles/commands.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/commands.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/commands.a CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o CMakeFiles/commands.dir/command.cpp.o CMakeFiles/commands.dir/commandsPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp
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[ 73%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor ‘Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics’ will be initialized after [-Wreorder]
   86 |   bool m_electrostatics;
      |        ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning:   ‘Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat’ [-Wreorder]
   82 |   Format m_inputFormat;
      |          ^~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning:   when initialized here [-Wreorder]
   28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_)
      | ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:58:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare]
   58 |   for (unsigned int i = 0; i < charges.rows(); ++i) {
      |                            ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   95 |   for (unsigned int i = 0; i < lines.size(); ++i) {
      |                            ~~^~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges/scriptcharges.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp
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[ 76%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/plugindownloader.cpp
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[ 76%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick/ballandstick.cpp
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[ 76%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o
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[ 76%] Built target BallStick
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color="
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[ 76%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp
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[ 76%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/zipextracter.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function ‘QList<QString> Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable ‘itrCount’ [-Wunused-variable]
  110 |   long itrCount = 0;
      |        ^~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp
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[ 77%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/ForcePlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a
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[ 78%] Built target Force
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color="
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[ 78%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp
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[ 78%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice/licorice.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 78%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 78%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 78%] Built target Licorice
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/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color="
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[ 78%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >(Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >&)Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp:88:51:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.389055].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp: In member function ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes/meshes.cpp:88:51: note: ‘<anonymous>’ declared here
   88 |     Core::Array<Vector3ub> colorsRGB(colors.size());
      |                                                   ^
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp
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[ 78%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a
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/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp
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[ 79%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent/noncovalent.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals/vanderwaals.cpp
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[ 80%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target VanDerWaals
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target NonCovalent
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Automatic MOC for target OverlayAxes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist.
/usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include
AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h"
AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp"
AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp"
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.h
AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp"
/usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/i686-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/i686-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d"
AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d"
AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt"
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target OverlayAxes_autogen
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 81%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe/wireframe.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o -MF CMakeFiles/AlignTool.dir/aligntool.cpp.o.d -o CMakeFiles/AlignTool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp
In file included from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:6:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h: In constructor ‘Avogadro::QtPlugins::AlignTool::AlignTool(QObject*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:87:20: warning: ‘Avogadro::QtPlugins::AlignTool::m_toolWidget’ will be initialized after [-Wreorder]
   87 |   mutable QWidget* m_toolWidget;
      |                    ^~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:81:26: warning:   ‘Avogadro::Rendering::GLRenderer* Avogadro::QtPlugins::AlignTool::m_renderer’ [-Wreorder]
   81 |   Rendering::GLRenderer* m_renderer;
      |                          ^~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning:   when initialized here [-Wreorder]
   48 | AlignTool::AlignTool(QObject* parent_)
      | ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:85:7: warning: ‘Avogadro::QtPlugins::AlignTool::m_alignType’ will be initialized after [-Wreorder]
   85 |   int m_alignType;
      |       ^~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:84:7: warning:   ‘int Avogadro::QtPlugins::AlignTool::m_axis’ [-Wreorder]
   84 |   int m_axis;
      |       ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning:   when initialized here [-Wreorder]
   48 | AlignTool::AlignTool(QObject* parent_)
      | ^~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘void Avogadro::QtPlugins::AlignTool::alignAtomToAxis(Avogadro::Index, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:159:11: warning: variable ‘align’ set but not used [-Wunused-but-set-variable]
  159 |   Vector3 align = m_molecule->atom(atomIndex).position3d();
      |           ^~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:163:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable]
  163 |   double alpha, beta, gamma;
      |          ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:14,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:15,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.h:11:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:148:47:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.480423].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:148:47: note: ‘<anonymous>’ declared here
  148 |   Core::Array<Vector3> newCoords(coords.size());
      |                                               ^
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1,
    inlined from ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:272:55:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.482112].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:272:54: note: ‘<anonymous>’ declared here
  272 |   QVector<Vector3> positions(m_atoms.size(), Vector3());
      |                                                      ^
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:161:47:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.480448].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:161:47: note: ‘<anonymous>’ declared here
  161 |   Core::Array<Vector3> newCoords(coords.size());
      |                                               ^
In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:346,
                 from /usr/include/eigen3/Eigen/Core:22:
In function ‘_mm_loadu_pd’,
    inlined from ‘Eigen::internal::ploadu<double __vector(2)>(Eigen::internal::unpacket_traits<double __vector(2)>::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:746:22,
    inlined from ‘Eigen::internal::ploadt<double __vector(2), 0>(Eigen::internal::unpacket_traits<double __vector(2)>::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26,
    inlined from ‘Eigen::internal::evaluator<Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::packet<0, double __vector(2)>(int, int) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42,
    inlined from ‘Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::packet<0, double __vector(2)>(int, int) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:782:80,
    inlined from ‘Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >::packetByOuterInner<0, double __vector(2)>(int, int) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54,
    inlined from ‘Eigen::internal::redux_vec_unroller<Eigen::internal::scalar_sum_op<double, double>, Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >, 0, 1>::run<double __vector(2)>(Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> > const&, Eigen::internal::scalar_sum_op<double, double> const&)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66,
    inlined from ‘Eigen::internal::redux_impl<Eigen::internal::scalar_sum_op<double, double>, Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >, 3, 2>::run<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >(Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> > const&, Eigen::internal::scalar_sum_op<double, double> const&, Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >::redux<Eigen::internal::scalar_sum_op<double, double> >(Eigen::internal::scalar_sum_op<double, double> const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56,
    inlined from ‘Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const, Eigen::Matrix<double, 3, 1, 0, 3, 1> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25,
    inlined from ‘Eigen::internal::dot_nocheck<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1>, false>::run(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&, Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51,
    inlined from ‘Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::dot<Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&) constEigen::ScalarBinaryOpTraits<double, Eigen::internal::traits<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Scalar, Eigen::internal::scalar_product_op<double, Eigen::internal::traits<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:178:22:
/usr/lib/gcc/i686-redhat-linux/13/include/emmintrin.h:134:24: warning: ‘MEM[(__m128d_u * {ref-all})&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized]
  134 |   return *(__m128d_u *)__P;
      |                        ^~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:168:11: note: ‘axisVector’ declared here
  168 |   Vector3 axisVector;
      |           ^~~~~~~~~~
In file included from /usr/include/eigen3/Eigen/Geometry:36,
                 from /usr/include/eigen3/Eigen/Dense:6:
In member function ‘Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::cross<Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&) constEigen::MatrixBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::cross_product_return_type<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::type’,
    inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:181:32:
/usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:45:61: warning: ‘MEM[(double &)&axisVector + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
   45 |     numext::conj(lhs.coeff(1) * rhs.coeff(2) - lhs.coeff(2) * rhs.coeff(1)),
      |                                                ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool/aligntool.cpp:168:11: note: ‘MEM[(double &)&axisVector + 16]’ was declared here
  168 |   Vector3 axisVector;
      |           ^~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o -MF CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o.d -o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/qrc_aligntool.cpp
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[ 82%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -MF CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -P CMakeFiles/AlignTool.dir/cmake_clean_target.cmake
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/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/AlignTool.a CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o CMakeFiles/AlignTool.dir/aligntool.cpp.o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp
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[ 83%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
  267 |   yp[2] = gradient(2) / normGradient;
      |           ~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here
  196 |   Matrix<qreal, 3, 1> gradient;
      |                       ^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: ‘n_step’ may be used uninitialized [-Wmaybe-uninitialized]
   56 |   qint64 n_step;
      |          ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: ‘abserr’ may be used uninitialized [-Wmaybe-uninitialized]
  151 |     flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr,
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  152 |                                         flag);
      |                                         ~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: ‘abserr’ was declared here
   53 |   qreal abserr;
      |         ^~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: ‘t_stop’ may be used uninitialized [-Wmaybe-uninitialized]
  145 |       ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) /
      |                                                 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: ‘t_stop’ was declared here
   61 |   qreal t_stop;
      |         ^~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/lib/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editor.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp
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[ 84%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp
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[ 84%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:242:25: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized]
  242 |   ydot[3] = gradient(2) / normGradient;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here
  171 |   Matrix<qreal, 3, 1> gradient;
      |                       ^~~~~~~~
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editor.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor/editortoolwidget.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/qrc_editor.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/EditorPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o
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/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/lib/qt5/bin/rcc --name label --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/qrc_label.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/label.qrc
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[ 85%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp
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[ 85%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus/focus.cpp
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[ 85%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/FocusPlugin.cpp
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[ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/ui_manipulatewidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulatewidget.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulator.qrc
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[ 85%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF CMakeFiles/LabelEditor.dir/labeleditor.cpp.o.d -o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label/labeleditor.cpp
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[ 87%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/qrc_label.cpp
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[ 87%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp
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[ 88%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator/manipulator.cpp
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[ 89%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp
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[ 89%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp
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[ 89%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o
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[ 89%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp:11:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13,
    inlined from ‘QVector<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::QVector(int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1,
    inlined from ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp:157:55:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.476196].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp: In member function ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool/measuretool.cpp:157:54: note: ‘<anonymous>’ declared here
  157 |   QVector<Vector3> positions(m_atoms.size(), Vector3());
      |                                                      ^
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[ 89%] Built target Manipulator
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/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 89%] Generating qrc_navigator.cpp
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/lib/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator/navigator.qrc
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 89%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp
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[ 89%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/lib/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool/playertool.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/qrc_navigator.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool/playertool.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/qrc_playertool.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake
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[ 91%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o
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/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend
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[ 91%] Generating ui_selectiontoolwidget.h
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'.
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 91%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp
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[ 91%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 91%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.h:13,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp:203:26:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.480270].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontool.cpp:203:26: note: ‘<anonymous>’ declared here
  203 |   Array<Vector3f> verts(4);
      |                          ^
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp: In member function ‘void Avogadro::QtPlugins::SelectionToolWidget::setDropDown(size_t, size_t)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp:36:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   36 |   if (current != m_ui->changeLayerDropDown->currentIndex())
      |       ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp
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[ 92%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview/resetview.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfacedialog.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 93%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/matrix.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemanager.h:12,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp:19:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<double, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1>, Eigen::Matrix<double, 3, 1, 0, 3, 1> >(Eigen::Matrix<double, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> >&)Eigen::Matrix<double, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<double, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<double, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<double, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp:776:51:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.510707].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces/surfaces.cpp:776:51: note: ‘<anonymous>’ declared here
  776 |   Core::Array<Vector3> positions(positionsf.size());
      |                                                   ^
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[ 94%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp
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[ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/lib/qt5/bin/rcc --name template --output /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/qrc_template.cpp /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/template.qrc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h:9,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.h:47:10,
    inlined from ‘std::__new_allocator<Avogadro::QtPlugins::SVG::SVGAtom>::construct<Avogadro::QtPlugins::SVG::SVGAtom, Avogadro::QtPlugins::SVG::SVGAtom const&>(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4,
    inlined from ‘std::allocator_traits<std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::construct<Avogadro::QtPlugins::SVG::SVGAtom, Avogadro::QtPlugins::SVG::SVGAtom const&>(std::allocator<Avogadro::QtPlugins::SVG::SVGAtom>&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17,
    inlined from ‘std::vector<Avogadro::QtPlugins::SVG::SVGAtom, std::allocator<Avogadro::QtPlugins::SVG::SVGAtom> >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30,
    inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:154:22:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here
  152 |     SVGAtom atom(atomPositions[i].cast<float>(), pos, i,
      |             ^~~~
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/SVGPlugin.cpp
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[ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -P CMakeFiles/SVG.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsoutputdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsdialog.ui
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbs.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsdialog.cpp
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[ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/apbsoutputdialog.cpp
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[ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs/opendxreader.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/apbsPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui
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[ 96%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp
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[ 95%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetool.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetool.cpp
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[ 96%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp
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[ 97%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool/templatetoolwidget.cpp
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[ 98%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -MF CMakeFiles/TemplateTool.dir/qrc_template.cpp.o.d -o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/qrc_template.cpp
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[ 98%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinput.cpp
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[ 98%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp
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[ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/TemplateTool.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -P CMakeFiles/TemplateTool.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_link_script CMakeFiles/TemplateTool.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/TemplateTool.a CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o CMakeFiles/TemplateTool.dir/templatetool.cpp.o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/TemplateTool.a
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.ui
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[ 98%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp
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[ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a
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[ 98%] Built target Cp2kInput
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput/quantuminput.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinput.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o
/usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a
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[ 99%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp
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[ 99%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp
In file included from /usr/include/eigen3/Eigen/Core:294,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:11,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:14,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:15,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.h:10,
                 from /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6:
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.465159].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: ‘<anonymous>’ declared here
  145 |   Array<Vector3f> vertices(numVertices);
      |                                       ^
In member function ‘Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::PlainObjectBase(Eigen::PlainObjectBase<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’,
    inlined from ‘Eigen::Matrix<float, 3, 1, 0, 3, 1>::Matrix(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65,
    inlined from ‘std::_Construct<Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&>(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7,
    inlined from ‘std::__do_uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21,
    inlined from ‘std::__uninitialized_fill_n<false>::__uninit_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34,
    inlined from ‘std::uninitialized_fill_n<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17,
    inlined from ‘std::__uninitialized_fill_n_a<Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1>, Eigen::Matrix<float, 3, 1, 0, 3, 1> >(Eigen::Matrix<float, 3, 1, 0, 3, 1>*, unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> >&)Eigen::Matrix<float, 3, 1, 0, 3, 1>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::_M_fill_initialize(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33,
    inlined from ‘std::vector<Eigen::Matrix<float, 3, 1, 0, 3, 1>, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > >::vector(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, std::allocator<Eigen::Matrix<float, 3, 1, 0, 3, 1> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27,
    inlined from ‘Avogadro::Core::internal::ArrayRefContainer<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::ArrayRefContainer(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:46:17,
    inlined from ‘Avogadro::Core::Array<Eigen::Matrix<float, 3, 1, 0, 3, 1> >::Array(unsigned int, Eigen::Matrix<float, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:120:9,
    inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’ at /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38:
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.465161].m_storage’ is used uninitialized [-Wuninitialized]
  512 |       : Base(), m_storage(other.m_storage) { }
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix<float, 3, 1, 0, 3, 1> const&, Eigen::Matrix<unsigned char, 3, 1, 0, 3, 1> const&)’:
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: ‘<anonymous>’ declared here
  146 |   Array<Vector3f> normals(numVertices);
      |                                      ^
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro -I/builddir/build/BUILD/avogadrolibs-1.98.1 -I/builddir/build/BUILD/avogadrolibs-1.98.1/build -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/pluginmanager.cpp
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtPlugins.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.98.1 CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o  -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.98.1/build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/AlignTool.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/Centroid.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Forcefield.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PLY.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/Spectra.a ../../lib/avogadro2/staticplugins/TemplateTool.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroCalc.so.1.98.1 ../../thirdparty/libgwavi/libgwavi.a /usr/lib/libQt5Svg.so.5.15.11 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 ../../lib/libAvogadroMoleQueue.so.1.98.1 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 /usr/lib/libQt5Network.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 ../../lib/libAvogadroQuantumIO.so.1.98.1 /usr/lib/libQt5Network.so.5.15.11 /usr/lib/libarchive.so ../../lib/libAvogadroQtOpenGL.so.1.98.1 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 /usr/lib/libGLX.so /usr/lib/libOpenGL.so /usr/lib/libGLEW.so /usr/lib/libQt5Concurrent.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 ../../lib/libAvogadroQtGui.so.1.98.1 ../../lib/libAvogadroIO.so.1.98.1 /usr/lib/libQt5Widgets.so.5.15.11 /usr/lib/libQt5Gui.so.5.15.11 /usr/lib/libQt5Core.so.5.15.11 ../../lib/libAvogadroRendering.so.1.98.1 ../../lib/libAvogadroCore.so.1.98.1 
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.98.1 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61: warning: type ‘Avogadro::QtPlugins::BasisOption’ violates the C++ One Definition Rule [-Wodr]
   61 | enum BasisOption
      | 
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59: note: an enum with different value name is defined in another translation unit
   59 | enum BasisOption
      | 
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63: note: name ‘BasisSZVGTH’ differs from name ‘BasisSTO3G’ defined in another translation unit
   63 |   BasisSZVGTH = 0,
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61: note: mismatching definition
   61 |   BasisSTO3G = 0,
      | 
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40: warning: type ‘Avogadro::QtPlugins::CalculateOption’ violates the C++ One Definition Rule [-Wodr]
   40 | enum CalculateOption
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37: note: an enum with different value name is defined in another translation unit
   37 | enum CalculateOption
      | 
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42: note: name ‘CalculateEnergy’ differs from name ‘CalculateSinglePoint’ defined in another translation unit
   42 |   CalculateEnergy = 0,
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/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39: note: mismatching definition
   39 |   CalculateSinglePoint = 0,
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Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands
1.98.1/avogadro/molequeue/molequeuewidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/backgroundfileformat.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/backgroundfileformat.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementtranslator.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementtranslator.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacewidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacewidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictableview.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictableview.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/utilities.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/utilities.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/viewfactory.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/viewfactory.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/activeobjects.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/activeobjects.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/qttextrenderstrategy.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/qttextrenderstrategy.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussiancube.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussiancube.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemjson.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcsector.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arcstrip.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrogl.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrogl.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrorendering.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/avogadrorendering.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/g/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands
lrendervisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quad.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/quadoutline.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel2d.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel2d.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel3d.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabel3d.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textrenderstrategy.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textrenderstrategy.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/transformnode.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/transformnode.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogad/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.h:24: warning: Compound Avogadro::Calc::EnergyCalculator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:21: warning: Compound Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:23: warning: Compound Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomutilities.h:22: warning: Compound Avogadro::Core::AtomUtilities is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:23: warning: Compound Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:88: warning: Compound Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:36: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:22: warning: Compound Avogadro::Core::hBondRecord is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:671: warning: Compound Avogadro::QtGui::RWAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:678: warning: Compound Avogadro::QtGui::RWBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:27: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h:20: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/genericoutput.h:18: warning: Compound Avogadro::QuantumIO::GenericOutput is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h:19: warning: Compound Avogadro::QuantumIO::MopacAux is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/orca.h:20: warning: Compound Avogadro::QuantumIO::ORCAOutput is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:64: warning: Compound Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:12: warning: Compound Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:26: warning: Compound Avogadro::TypeTraits is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:37: warning: Compound Avogadro::TypeTraits< char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:114: warning: Compound Avogadro::TypeTraits< double > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< float > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:81: warning: Compound Avogadro::TypeTraits< int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:59: warning: Compound Avogadro::TypeTraits< short > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:48: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:92: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:70: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:14: warning: Compound Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:24: warning: Compound Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h:14: warning: Compound Avogadro::VTK::QVTKWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h:38: warning: Compound Avogadro::VTK::vtkGLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:217: warning: no matching class member found for 
  template < Molecule_T >
  BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const
Possible candidates:
  'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h
  'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:44: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:121: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:110: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:88: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented.
ro/rendering/volumegeometry.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/volumegeometry.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkAvogadroActor.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h...
Preprocessing /builddir/build/BUILD/avogadrolibs-1.98.1/docs/mainpage.dox...
Parsing file /builddir/build/BUILD/avogadrolibs-1.98.1/docs/mainpage.dox...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Distributing member group documentation.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating file documentation...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound vtkAvogadroActor...
Generating concept documentation...
Generating module documentation...
Generating namespace documentation...
Generating docs for compound Avogadro::Frustrum...
Generating docs for compound Avogadro::TypeTraits...
Generating docs for compound Avogadro::TypeTraits< char >...
Generating docs for compound Avogadro::TypeTraits< double >...
Generating docs for compound Avogadro::TypeTraits< float >...
Generating docs for compound Avogadro::TypeTraits< int >...
Generating docs for compound Avogadro::TypeTraits< short >...
Generating docs for compound Avogadro::TypeTraits< unsigned char /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:55: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:99: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/types.h:77: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemanager.h:97: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented:
  parameter 'points'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:42: warning: Member value(const Eigen::VectorXd &x) override (function) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:43: warning: Member gradient(const Eigen::VectorXd &x, Eigen::VectorXd &grad) override (function) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:51: warning: Member m_molecule (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:52: warning: Member m_cell (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:53: warning: Member m_radii (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:54: warning: Member m_vdw (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:55: warning: Member m_depth (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:56: warning: Member m_exponent (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/lennardjones.h:58: warning: Member m_elements (variable) of class Avogadro::Calc::LennardJones is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:21: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:21: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/avogadrocore.h:63: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:194: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:71: warning: Member valence_electrons[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:83: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:226: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/elementdata.h:267: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:37: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:39: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/angleiterator.h:45: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:801: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:808: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateblockgenerator.h:83: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:40: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented:
  parameter 'molecule'
  parameter 'newVolume'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented:
  parameter 'molecule'
  parameter 'newCellColMatrix'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:124: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:227: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:228: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:230: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:231: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:239: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:240: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:240: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:240: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:241: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:242: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:242: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:243: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:244: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:245: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented:
  parameter 'value'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:37: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:39: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/dihedraliterator.h:45: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:229: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:230: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:231: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:232: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:233: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:234: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:235: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:236: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:237: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:238: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:239: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:240: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:241: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:242: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:248: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:256: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:264: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:272: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:280: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:288: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:296: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:304: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:312: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussianset.h:313: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/gaussiansettools.h:35: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:31: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:32: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:33: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:34: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layer.h:35: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:34: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:49: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:50: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:51: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:213: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:214: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:274: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:275: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:276: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:309: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:407: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:408: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:410: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:412: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:420: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:421: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:423: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:425: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:432: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:487: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:508: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:509: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:510: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:511: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:512: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:513: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:514: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:515: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:536: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:544: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:545: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:546: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:547: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:553: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:584: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:585: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:586: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:588: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:589: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:714: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:721: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:722: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:726: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:728: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:732: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:734: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:736: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:738: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:739: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:724: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:752: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:755: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:758: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:759: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:760: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:762: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:763: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:764: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:765: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:766: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:768: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:769: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:770: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:771: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:774: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:776: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:777: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:779: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:780: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:781: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:784: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented.
>...
Generating docs for compound Avogadro::TypeTraits< unsigned int >...
Generating docs for compound Avogadro::TypeTraits< unsigned short >...
Generating docs for compound Avogadro::Calc::ChargeManager...
Generating docs for compound Avogadro::Calc::ChargeModel...
Generating docs for compound Avogadro::Calc::DefaultModel...
Generating docs for compound Avogadro::Calc::EnergyCalculator...
Generating docs for compound Avogadro::Calc::EnergyManager...
Generating docs for compound Avogadro::Calc::LennardJones...
Generating docs for namespace Avogadro::Core
Generating docs for compound Avogadro::Core::AngleIterator...
Generating docs for compound Avogadro::Core::Array...
Generating docs for compound Avogadro::Core::ArraySet...
Generating docs for nested compound Avogadro::Core::ArraySet::Holder...
Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder...
Generating docs for compound Avogadro::Core::Atom...
Generating docs for compound Avogadro::Core::AtomTemplate...
Generating docs for compound Avogadro::Core::AtomTyper...
Generating docs for compound Avogadro::Core::AtomUtilities...
Generating docs for compound Avogadro::Core::AvoSpglib...
Generating docs for compound Avogadro::Core::BasisSet...
Generating docs for compound Avogadro::Core::Bond...
Generating docs for compound Avogadro::Core::BondTemplate...
Generating docs for compound Avogadro::Core::Color3f...
Generating docs for compound Avogadro::Core::CoordinateBlockGenerator...
Generating docs for compound Avogadro::Core::CoordinateSet...
Generating docs for compound Avogadro::Core::CrystalTools...
Generating docs for compound Avogadro::Core::Cube...
Generating docs for compound Avogadro::Core::DihedralIterator...
Generating docs for compound Avogadro::Core::Elements...
Generating docs for compound Avogadro::Core::GaussianSet...
Generating docs for compound Avogadro::Core::GaussianSetTools...
Generating docs for compound Avogadro::Core::Graph...
Generating docs for compound Avogadro::Core::hBondRecord...
Generating docs for compound Avogadro::Core::Layer...
Generating docs for compound Avogadro::Core::LayerData...
Generating docs for compound Avogadro::Core::LayerManager...
Generating docs for compound Avogadro::Core::Mesh...
Generating docs for compound Avogadro::Core::Molecule...
Generating docs for compound Avogadro::Core::MoleculeInfo...
Generating docs for compound Avogadro::Core::Mutex...
Generating docs for compound Avogadro::Core::NameAtomTyper...
Generating docs for compound Avogadro::Core::NeighborPerceiver...
Generating docs for compound Avogadro::Core::Residue...
Generating docs for compound Avogadro::Core::ResidueData...
Generating docs for compound Avogadro::Core::RingPerceiver...
Generating docs for compound Avogadro::Core::SecondaryStructureAssigner...
Generating docs for compound Avogadro::Core::SharedMutex...
Generating docs for compound Avogadro::Core::SlaterSet...
Generating docs for compound Avogadro::Core::SlaterSetTools...
Generating docs for compound Avogadro::Core::SpaceGroups...
Generating docs for compound Avogadro::Core::SymbolAtomTyper...
Generating docs for compound Avogadro::Core::UnitCell...
Generating docs for compound Avogadro::Core::Variant...
Generating docs for compound Avogadro::Core::VariantMap...
Generating docs for compound Avogadro::Core::internal::ArrayRefContainer...
Generating docs for compound Avogadro::Io::CaseInsensitiveComparator...
Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare...
Generating docs for compound Avogadro::Io::CjsonFormat...
Generating docs for compound Avogadro::Io::CmlFormat...
Generating docs for compound Avogadro::Io::DcdFormat...
Generating docs for compound Avogadro::Io::FileFormat...
Generating docs for compound Avogadro::Io::FileFormatManager...
Generating docs for compound Avogadro::Io::GromacsFormat...
Generating docs for compound Avogadro::Io::Hdf5DataFormat...
Generating docs for compound Avogadro::Io::LammpsDataFormat...
Generating docs for compound Avogadro::Io::LammpsTrajectoryFormat...
Generating docs for compound Avogadro::/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:70: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:76: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:62: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:63: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:64: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:65: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:66: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:67: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:68: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:60: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:61: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:62: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:63: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:64: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:65: warning: Member m_cachedArray (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/neighborperceiver.h:66: warning: Member m_cachedIndex (variable) of class Avogadro::Core::NeighborPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:39: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:55: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:56: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:57: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:59: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:61: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:65: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:67: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:69: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:71: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:73: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:75: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:77: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:82: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:120: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:138: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:139: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:140: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:141: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:142: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:143: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:144: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residue.h:145: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:40: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/secondarystructure.h:43: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/slatersettools.h:33: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant.h:31: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant.h:127: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:62: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:73: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:84: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:95: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:106: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:117: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:128: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:139: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:150: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:156: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:167: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:184: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:195: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:206: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:217: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:234: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:247: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:262: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:277: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:286: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:304: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variant-inline.h:313: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag <rpcMethod> found
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h:459: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="")
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented:
  parameter 'title'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:41: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:42: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:43: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:34: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:35: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:37: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/containerwidget.h:38: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:48: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:45: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented:
  parameter 'atom'
  parameter 'numberOfHydrogens'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:612: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:457: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:31: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:68: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:40: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:55: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:56: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:57: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:58: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:59: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:61: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:63: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:64: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/layermodel.h:65: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented:
  parameter 'reverse'
  parameter 'parent'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented:
  parameter 'reverse'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented:
  parameter 'val2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:96: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:133: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:155: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:228: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:230: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:231: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:233: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:235: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:236: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:213: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:214: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:274: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:275: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:276: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:309: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:407: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:408: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:410: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:412: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:420: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:421: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:423: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:425: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:432: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:487: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:508: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:509: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:510: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:511: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:512: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:513: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:514: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:515: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:536: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:544: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:545: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:546: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:547: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:553: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:584: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:585: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:586: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:588: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:589: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:714: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:721: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:722: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:726: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:728: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:732: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:734: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:736: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:738: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:739: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:724: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:752: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:755: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:758: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:759: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:760: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:762: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:763: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:764: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:765: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:766: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:768: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:769: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:770: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:771: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:774: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:776: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:777: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:779: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:780: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:781: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:784: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/molecule.h:786: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented:
  parameter 'atomId1'
  parameter 'atomId2'
Io::MdlFormat...
Generating docs for compound Avogadro::Io::MMTFFormat...
Generating docs for compound Avogadro::Io::OutcarFormat...
Generating docs for compound Avogadro::Io::PdbFormat...
Generating docs for compound Avogadro::Io::PoscarFormat...
Generating docs for compound Avogadro::Io::TrrFormat...
Generating docs for compound Avogadro::Io::TurbomoleFormat...
Generating docs for compound Avogadro::Io::XyzFormat...
Generating docs for compound Avogadro::MoleQueue::BatchJob...
Generating docs for compound Avogadro::MoleQueue::Client...
Generating docs for compound Avogadro::MoleQueue::InputGenerator...
Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog...
Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget...
Generating docs for compound Avogadro::MoleQueue::JobObject...
Generating docs for compound Avogadro::MoleQueue::JsonRpcClient...
Generating docs for compound Avogadro::MoleQueue::MoleQueueDialog...
Generating docs for compound Avogadro::MoleQueue::MoleQueueManager...
Generating docs for compound Avogadro::MoleQueue::MoleQueueQueueListModel...
Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget...
Generating docs for compound Avogadro::QtGui::BackgroundFileFormat...
Generating docs for compound Avogadro::QtGui::ColorButton...
Generating docs for compound Avogadro::QtGui::ContainerWidget...
Generating docs for compound Avogadro::QtGui::CustomElementDialog...
Generating docs for compound Avogadro::QtGui::ElementDetail...
Generating docs for compound Avogadro::QtGui::ElementItem...
Generating docs for compound Avogadro::QtGui::ElementTranslator...
Generating docs for compound Avogadro::QtGui::ExtensionPlugin...
Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory...
Generating docs for compound Avogadro::QtGui::FileBrowseWidget...
Generating docs for compound Avogadro::QtGui::FileFormatDialog...
Generating docs for compound Avogadro::QtGui::GenericHighlighter...
Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule...
Generating docs for compound Avogadro::QtGui::HydrogenTools...
Generating docs for compound Avogadro::QtGui::InterfaceScript...
Generating docs for compound Avogadro::QtGui::InterfaceWidget...
Generating docs for compound Avogadro::QtGui::JsonWidget...
Generating docs for compound Avogadro::QtGui::LayerModel...
Generating docs for compound Avogadro::QtGui::MeshGenerator...
Generating docs for compound Avogadro::QtGui::Molecule...
Generating docs for compound Avogadro::QtGui::MoleculeModel...
Generating docs for compound Avogadro::QtGui::MoleculeSystem...
Generating docs for compound Avogadro::QtGui::MultiViewWidget...
Generating docs for compound Avogadro::QtGui::PeriodicTableScene...
Generating docs for compound Avogadro::QtGui::PeriodicTableView...
Generating docs for compound Avogadro::QtGui::PersistentAtom...
Generating docs for compound Avogadro::QtGui::PersistentBond...
Generating docs for compound Avogadro::QtGui::PluginLayerManager...
Generating docs for compound Avogadro::QtGui::PythonScript...
Generating docs for compound Avogadro::QtGui::RWAtom...
Generating docs for compound Avogadro::QtGui::RWBond...
Generating docs for compound Avogadro::QtGui::RWLayerManager...
Generating docs for compound Avogadro::QtGui::RWMolecule...
Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand...
Generating docs for compound Avogadro::QtGui::ScenePlugin...
Generating docs for compound Avogadro::QtGui::ScenePluginFactory...
Generating docs for compound Avogadro::QtGui::ScenePluginModel...
Generating docs for compound Avogadro::QtGui::ScriptLoader...
Generating docs for compound Avogadro::QtGui::ToolPlugin...
Generating docs for compound Avogadro::QtGui::ToolPluginFactory...
Generating docs for compound Avogadro::QtGui::ViewFactory...
Generating docs for compound Avogadro::QtOpenGL::ActiveObjects...
Generating docs for compound Avogadro::QtOpenGL::GLWidget...
Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy...
Generating docs for compound Avogadro::QuantumIO::GamessukOut...
Ge/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:54: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:55: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:56: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:50: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:37: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:44: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:46: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/multiviewwidget.h:47: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:139: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:140: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:141: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:142: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:143: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:675: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:682: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:226: warning: Member label(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:227: warning: Member setLabel(Index atomId, const std::string &label, const QString &undoText=tr("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:241: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:243: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:298: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:299: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:656: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:657: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:664: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:666: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented:
  parameter 'atomId'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:30: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:37: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:40: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule_undo.h:41: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:140: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:169: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/toolplugin.h:170: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gaussianfchk.h:54: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/mopacaux.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:94: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:89: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:93: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:97: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:101: warning: Member solidPipeline() (function) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:112: warning: Member m_perspectiveFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrenderer.h:113: warning: Member m_orthographicFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented:
  parameter 'ui'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:60: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:34: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:35: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
nerating docs for compound Avogadro::QuantumIO::GAMESSUSOutput...
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Generating XML output for class Avogadro::Core::CoordinateBlockGenerator
Generating XML output for class Avogadro::Core::CoordinateSet
Generating XML output for class Avogadro::Core::CrystalTools
Generating XML output for class Avogadro::Core::Cube
Generating XML output for class Avogadro::Rendering::CurveGeometry
Generating XML output for class Avogadro::QtGui::CustomElementDialog
Generating XML output for class Avogadro::Rendering::Cylinder
Generating XML output for class Avogadro::Rendering::CylinderColor
Generating XM/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:37: warning: Member PLYVisitor(const Camera &camera) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:40: warning: Member begin() (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:41: warning: Member end() (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:55: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:56: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:59: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:62: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:63: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/plyvisitor.h:64: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::PLYVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:53: warning: Member setAoEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:59: warning: Member setAoStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:65: warning: Member setEdEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/solidpipeline.h:75: warning: Member setEdStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:19: warning: Member ChartDialog(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:22: warning: Member chartWidget() (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:24: warning: Member sizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartdialog.h:25: warning: Member minimumSizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:32: warning: Member Axis (enumeration) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:29: warning: Member ChartWidget(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:38: warning: Member addPlot(const std::vector< float > &x, const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:41: warning: Member addPlots(const std::vector< std::vector< float > > &plotData, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:44: warning: Member clearPlots() (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:46: warning: Member setXAxisTitle(const char *title) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:48: warning: Member setYAxisTitle(const char *title) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:50: warning: Member setTickLabels(Axis a, const std::vector< float > &tickPositions, const std::vector< std::string > &tickLabels) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/chartwidget.h:53: warning: Member setAxisLimits(Axis a, float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/vtkglwidget.h:43: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented.
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented:
  parameter 'points'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag <rpcMethod> found
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="")
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented:
  parameter 'title'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented:
  parameter 'molecule'
  parameter 'newVolume'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented:
  parameter 'molecule'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented:
  parameter 'molecule'
  parameter 'newCellColMatrix'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented:
  parameter 'value'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented:
  parameter 'start'
  parameter 'end'
  parameter 'dashCount'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented:
  parameter 'formatPrefix'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented:
  parameter 'fvec'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented:
  parameter 'ui'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented:
  parameter 'atom'
  parameter 'numberOfHydrogens'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
L output for class Avogadro::Rendering::CylinderGeometry
Generating XML output for class Avogadro::Rendering::DashedLineGeometry
Generating XML output for class Avogadro::Io::DcdFormat
Generating XML output for class Avogadro::Calc::DefaultModel
Generating XML output for class Avogadro::Core::DihedralIterator
Generating XML output for class Avogadro::Rendering::Drawable
Generating XML output for class Avogadro::Rendering::EigenData
Generating XML output for class Avogadro::QtGui::ElementDetail
Generating XML output for class Avogadro::QtGui::ElementItem
Generating XML output for class Avogadro::Core::Elements
Generating XML output for class Avogadro::QtGui::ElementTranslator
Generating XML output for class Avogadro::Calc::EnergyCalculator
Generating XML output for class Avogadro::Calc::EnergyManager
Generating XML output for class Avogadro::QtGui::ExtensionPlugin
Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory
Generating XML output for class Avogadro::QtGui::FileBrowseWidget
Generating XML output for class Avogadro::Io::FileFormat
Generating XML output for class Avogadro::QtGui::FileFormatDialog
Generating XML output for class Avogadro::Io::FileFormatManager
Generating XML output for class Avogadro::Frustrum
Generating XML output for class Avogadro::QuantumIO::GamessukOut
Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput
Generating XML output for class Avogadro::QuantumIO::GaussianCube
Generating XML output for class Avogadro::QuantumIO::GaussianFchk
Generating XML output for class Avogadro::Core::GaussianSet
Generating XML output for class Avogadro::Core::GaussianSetTools
Generating XML output for class Avogadro::QtGui::GenericHighlighter
Generating XML output for class Avogadro::QuantumIO::GenericOutput
Generating XML output for class Avogadro::Rendering::GeometryNode
Generating XML output for class Avogadro::Rendering::GeometryVisitor
Generating XML output for class Avogadro::Rendering::GLRenderer
Generating XML output for class Avogadro::Rendering::GLRenderVisitor
Generating XML output for class Avogadro::QtOpenGL::GLWidget
Generating XML output for class Avogadro::Core::Graph
Generating XML output for class Avogadro::Io::GromacsFormat
Generating XML output for class Avogadro::Rendering::GroupNode
Generating XML output for class Avogadro::QuantumIO::GUKBasisSet
Generating XML output for class Avogadro::Core::hBondRecord
Generating XML output for class Avogadro::Io::Hdf5DataFormat
Generating XML output for class Avogadro::Core::ArraySet::Holder
Generating XML output for class Avogadro::QtGui::HydrogenTools
Generating XML output for class Avogadro::Rendering::Identifier
Generating XML output for class Avogadro::Rendering::Primitive::Identifier
Generating XML output for class Avogadro::MoleQueue::InputGenerator
Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog
Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget
Generating XML output for class Avogadro::QtGui::InterfaceScript
Generating XML output for class Avogadro::QtGui::InterfaceWidget
Generating XML output for class Avogadro::MoleQueue::JobObject
Generating XML output for class Avogadro::MoleQueue::JsonRpcClient
Generating XML output for class Avogadro::QtGui::JsonWidget
Generating XML output for class Avogadro::Io::LammpsDataFormat
Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat
Generating XML output for class Avogadro::Core::Layer
Generating XML output for class Avogadro::Core::LayerData
Generating XML output for class Avogadro::Core::LayerManager
Generating XML output for class Avogadro::QtGui::LayerModel
Generating XML output for class Avogadro::Calc::LennardJones
Generating XML output for class Avogadro::Rendering::Line
Generating XML output for class Avogadro::Rendering::LineStripGeometry
Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare
Generating XML output for class Avogadro::Io::MdlFormat
Generating XML output for class Avogadro::Core::Mesh
Generating XML output for class Avogadro::QtGui::MeshGenerator
Generating XML output for class Avogadro::Rendering::MeshGeometry
Generating XML output for class Avogadro::Io::MMTFFormat
Generating XML output for class Avogadro::QuantumIO::MoldenFile
Generating XML output for class Avogadro::Core::Molecule
Generating XML output for class Avogadro::QtGui::Molecule
Generating XML output for class Avogadro::Core::MoleculeInfo
Generating XML output for class Avogadro::QtGui::MoleculeModel
Generating XML output for class Avogadro::QtGui::MoleculeSystem
Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog
Generating XML output for class Avogadro::MoleQueue::MoleQueueManager
Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel
Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget
Generating XML output for class Avogadro::QuantumIO::MopacAux
Generating XML output for class Avogadro::QtGui::MultiViewWidget
Generating XML output for class Avogadro::Core::Mutex
Generating XML output for class Avogadro::Core::NameAtomTyper
Generating XML output for class Avogadro::Core::NeighborPerceiver
Generating XML output for class Avogadro::Rendering::Node
Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo
Generating XML output for class Avogadro::QuantumIO::NWChemJson
Generating XML output for class Avogadro::QuantumIO::NWChemLog
Generating XML output for class Avogadro::QuantumIO::ORCAOutput
Generating XML output for class Avogadro::Io::OutcarFormat
Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex
Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex
Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex
Generating XML output for class Avogadro::Io::PdbFormat
Generating XML output for class Avogadro::QtGui::PeriodicTableScene
Generating XML output for class Avogadro::QtGui::PeriodicTableView
Generating XML output for class Avogadro::QtGui::PersistentAtom
Generating XML output for class Avogadro::QtGui::PersistentBond
Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder
Generating XML output for class Avogadro::QtGui::PluginLayerManager
Generating XML output for class Avogadro::Rendering::PLYVisitor
Generating XML output for class Avogadro::Rendering::Point
Generating XML output for class Avogadro::Io::PoscarFormat
Generating XML output for class Avogadro::Rendering::POVRayVisitor
Generating XML output for class Avogadro::Rendering::Primitive
Generating XML output for class Avogadro::QtGui::PythonScript
Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy
Generating XML output for class Avogadro::Rendering::Quad
Generating XML output for class Avogadro::Rendering::QuadOutline
Generating XML output for class Avogadro::VTK::QVTKWidget
Generating XML output for class Avogadro::MoleQueue::BatchJob::Request
Generating XML output for class Avogadro::Core::Residue
Generating XML output for class Avogadro::Core::ResidueData
Generating XML output for class Avogadro::Core::RingPerceiver
Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule
Generating XML output for class Avogadro::QtGui::RWAtom
Generating XML output for class Avogadro::QtGui::RWBond
Generating XML output for class Avogadro::QtGui::RWLayerManager
Generating XML output for class Avogadro::QtGui::RWMolecule
Generating XML output for class Avogadro::Rendering::Scene
Generating XML output for class Avogadro::QtGui::ScenePlugin
Generating XML output for class Avogadro::QtGui::ScenePluginFactory
Generating XML output for class Avogadro::QtGui::ScenePluginModel
Generating XML output for class Avogadro::QtGui::ScriptLoader
Generating XML output for class Avogadro::Core::SecondaryStructureAssigner
Generating XML output for class Avogadro::Rendering::Shader
Generating XML output for class Avogadro::Rendering::ShaderInfo
Generating XML output for class Avogadro::Rendering::ShaderProgram
Generating XML output for class Avogadro::Core::SharedMutex
Generating XML output for class Avogadro::Core::SlaterSet
Generating XML output for class Avogadro::Core::SlaterSetTools
Generating XML output for class Avogadro::Rendering::SolidPipeline
Generating XML output for class Avogadro::Core::SpaceGroups
Generating XML output for class Avogadro::Rendering::Sphere
Generating XML output for class Avogadro::Rendering::SphereColor
Generating XML output for class Avogadro::Rendering::SphereGeometry
Generating XML output for class Avogadro::Core::SymbolAtomTyper
Generating XML output for class Avogadro::Rendering::TextLabel2D
Generating XML output for class Avogadro::Rendering::TextLabel3D
Generating XML output for class Avogadro::Rendering::TextLabelBase
Generating XML output for class Avogadro::Rendering::TextProperties
Generating XML output for class Avogadro::Rendering::TextRenderStrategy
Generating XML output for class Avogadro::Rendering::Texture2D
Generating XML output for class Avogadro::QtGui::ToolPlugin
Generating XML output for class Avogadro::QtGui::ToolPluginFactory
Generating XML output for class Avogadro::Rendering::TransformNode
Generating XML output for class Avogadro::Io::TrrFormat
Generating XML output for class Avogadro::Io::TurbomoleFormat
Generating XML output for class Avogadro::TypeTraits
Generating XML output for class Avogadro::TypeTraits< char >
Generating XML output for class Avogadro::TypeTraits< double >
Generating XML output for class Avogadro::TypeTraits< float >
Generating XML output for class Avogadro::TypeTraits< int >
Generating XML output for class Avogadro::TypeTraits< short >
Generating XML output for class Avogadro::TypeTraits< unsigned char >
Generating XML output for class Avogadro::TypeTraits< unsigned int >
Generating XML output for class Avogadro::TypeTraits< unsigned short >
Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand
Generating XML output for class Avogadro::Core::UnitCell
Generating XML output for class Avogadro::Core::Variant
Generating XML output for class Avogadro::Core::VariantMap
Generating XML output for class Avogadro::QtGui::ViewFactory
Generating XML output for class Avogadro::Rendering::Visitor
Generating XML output for class Avogadro::Rendering::VolumeGeometry
Generating XML output for class Avogadro::Rendering::VRMLVisitor
Generating XML output for class vtkAvogadroActor
Generating XML output for class Avogadro::VTK::vtkGLWidget
Generating XML output for class Avogadro::Io::XyzFormat
Generating XML output for namespace Avogadro
Generating XML output for namespace Avogadro::Calc
Generating XML output for namespace Avogadro::Core
Generating XML output for namespace Avogadro::Core::internal
Generating XML output for namespace Avogadro::Io
Generating XML output for namespace Avogadro::MoleQueue
Generating XML output for namespace Avogadro::MoleQueue::Ui
Generating XML output for namespace Avogadro::QtGui
Generating XML output for namespace Avogadro::QtGui::@110
Generating XML output for namespace Avogadro::QtGui::Ui
Generating XML output for namespace Avogadro::QtGui::Utilities
Generating XML output for namespace Avogadro::QtOpenGL
Generating XML output for namespace Avogadro::QtPlugins
Generating XML output for namespace Avogadro::QuantumIO
Generating XML output for namespace Avogadro::Rendering
Generating XML output for namespace Avogadro::VTK
Generating XML output for namespace cppoptlib
Generating XML output for namespace QtPlugins
Generating XML output for namespace std
Generating XML output for file chargemanager.h
Generating XML output for file chargemodel.h
Generating XML output for file defaultmodel.h
Generating XML output for file energycalculator.h
Generating XML output for file energymanager.h
Generating XML output for file lennardjones.h
Generating XML output for file lennardjonesdata.h
Generating XML output for file angleiterator.h
Generating XML output for file angletools.h
Generating XML output for file array.h
Generating XML output for file atom.h
Generating XML output for file atomtyper-inline.h
Generating XML output for file atomtyper.h
Generating XML output for file atomutilities.h
Generating XML output for file avogadrocore.h
Generating XML output for file avospglib.h
Generating/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented:
  parameter 'reverse'
  parameter 'parent'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented:
  parameter 'reverse'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented:
  parameter 'val2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented:
  parameter 'atomId1'
  parameter 'atomId2'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr)
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented:
  parameter 'parent_'
/builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented:
  parameter 'atomId'
 XML output for file basisset.h
Generating XML output for file bond.h
Generating XML output for file color3f.h
Generating XML output for file coordinateblockgenerator.h
Generating XML output for file coordinateset.h
Generating XML output for file crystaltools.h
Generating XML output for file cube.h
Generating XML output for file dihedraliterator.h
Generating XML output for file elementdata.h
Generating XML output for file elements.h
Generating XML output for file gaussianset.h
Generating XML output for file gaussiansettools.h
Generating XML output for file graph.h
Generating XML output for file layer.h
Generating XML output for file layermanager.h
Generating XML output for file matrix.h
Generating XML output for file mdlvalence_p.h
Generating XML output for file mesh.h
Generating XML output for file mutex.h
Generating XML output for file nameatomtyper.h
Generating XML output for file neighborperceiver.h
Generating XML output for file residue.h
Generating XML output for file residuecolors.h
Generating XML output for file residuedata.h
Generating XML output for file ringperceiver.h
Generating XML output for file secondarystructure.h
Generating XML output for file sharedmutex.h
Generating XML output for file slaterset.h
Generating XML output for file slatersettools.h
Generating XML output for file spacegroupdata.h
Generating XML output for file spacegroups.h
Generating XML output for file symbolatomtyper.h
Generating XML output for file types.h
Generating XML output for file unitcell.h
Generating XML output for file variant-inline.h
Generating XML output for file variant.h
Generating XML output for file variantmap.h
Generating XML output for file vector.h
Generating XML output for file cjsonformat.h
Generating XML output for file cmlformat.h
Generating XML output for file dcdformat.h
Generating XML output for file fileformat.h
Generating XML output for file fileformatmanager.h
Generating XML output for file gromacsformat.h
Generating XML output for file hdf5dataformat.h
Generating XML output for file lammpsformat.h
Generating XML output for file mdlformat.h
Generating XML output for file mmtfformat.h
Generating XML output for file pdbformat.h
Generating XML output for file trrformat.h
Generating XML output for file turbomoleformat.h
Generating XML output for file vaspformat.h
Generating XML output for file xyzformat.h
Generating XML output for file batchjob.h
Generating XML output for file client.h
Generating XML output for file jobobject.h
Generating XML output for file jsonrpcclient.h
Generating XML output for file inputgenerator.h
Generating XML output for file inputgeneratordialog.h
Generating XML output for file inputgeneratorwidget.h
Generating XML output for file molequeuedialog.h
Generating XML output for file molequeuemanager.h
Generating XML output for file molequeuequeuelistmodel.h
Generating XML output for file molequeuewidget.h
Generating XML output for file backgroundfileformat.h
Generating XML output for file colorbutton.h
Generating XML output for file containerwidget.h
Generating XML output for file customelementdialog.h
Generating XML output for file elementdetail_p.h
Generating XML output for file elementitem_p.h
Generating XML output for file elementtranslator.h
Generating XML output for file extensionplugin.h
Generating XML output for file filebrowsewidget.h
Generating XML output for file fileformatdialog.h
Generating XML output for file generichighlighter.h
Generating XML output for file hydrogentools.h
Generating XML output for file interfacescript.h
Generating XML output for file interfacewidget.h
Generating XML output for file jsonwidget.h
Generating XML output for file layermodel.h
Generating XML output for file meshgenerator.h
Generating XML output for file core/molecule.h
Generating XML output for file qtgui/molecule.h
Generating XML output for file moleculemodel.h
Generating XML output for file multiviewwidget.h
Generating XML output for file periodictablescene_p.h
Generating XML output for file periodictableview.h
Generating XML output for file persistentatom.h
Generating XML output for file persistentbond.h
Generating XML output for file pluginlayermanager.h
Generating XML output for file pythonscript.h
Generating XML output for file rwlayermanager.h
Generating XML output for file rwmolecule.h
Generating XML output for file rwmolecule_undo.h
Generating XML output for file sceneplugin.h
Generating XML output for file scenepluginmodel.h
Generating XML output for file scriptloader.h
Generating XML output for file toolplugin.h
Generating XML output for file core/utilities.h
Generating XML output for file qtgui/utilities.h
Generating XML output for file viewfactory.h
Generating XML output for file activeobjects.h
Generating XML output for file glwidget.h
Generating XML output for file qttextrenderstrategy.h
Generating XML output for file gamessukout.h
Generating XML output for file gamessus.h
Generating XML output for file gaussiancube.h
Generating XML output for file gaussianfchk.h
Generating XML output for file genericoutput.h
Generating XML output for file molden.h
Generating XML output for file mopacaux.h
Generating XML output for file nwchemjson.h
Generating XML output for file nwchemlog.h
Generating XML output for file orca.h
Generating XML output for file ambientocclusionspheregeometry.h
Generating XML output for file arcsector.h
Generating XML output for file arcstrip.h
Generating XML output for file arrowgeometry.h
Generating XML output for file avogadrogl.h
Generating XML output for file avogadrorendering.h
Generating XML output for file beziergeometry.h
Generating XML output for file bsplinegeometry.h
Generating XML output for file bufferobject.h
Generating XML output for file camera.h
Generating XML output for file cartoongeometry.h
Generating XML output for file curvegeometry.h
Generating XML output for file cylindergeometry.h
Generating XML output for file dashedlinegeometry.h
Generating XML output for file drawable.h
Generating XML output for file geometrynode.h
Generating XML output for file geometryvisitor.h
Generating XML output for file glrenderer.h
Generating XML output for file glrendervisitor.h
Generating XML output for file groupnode.h
Generating XML output for file linestripgeometry.h
Generating XML output for file meshgeometry.h
Generating XML output for file node.h
Generating XML output for file plyvisitor.h
Generating XML output for file povrayvisitor.h
Generating XML output for file primitive.h
Generating XML output for file quad.h
Generating XML output for file quadoutline.h
Generating XML output for file scene.h
Generating XML output for file shader.h
Generating XML output for file shaderprogram.h
Generating XML output for file solidpipeline.h
Generating XML output for file spheregeometry.h
Generating XML output for file textlabel2d.h
Generating XML output for file textlabel3d.h
Generating XML output for file textlabelbase.h
Generating XML output for file textproperties.h
Generating XML output for file textrenderstrategy.h
Generating XML output for file texture2d.h
Generating XML output for file transformnode.h
Generating XML output for file visitor.h
Generating XML output for file volumegeometry.h
Generating XML output for file vrmlvisitor.h
Generating XML output for file chartdialog.h
Generating XML output for file chartwidget.h
Generating XML output for file qvtkwidget.h
Generating XML output for file vtkAvogadroActor.h
Generating XML output for file vtkglwidget.h
Generating XML output for file mainpage.dox
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/client/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/docs/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering/
Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/vtk/
Generating XML output for the main page
Running plantuml with JAVA...
type lookup cache used 9275/65536 hits=39950 misses=10973
symbol lookup cache used 8448/65536 hits=70232 misses=8448
finished...
~/build/BUILD/avogadrolibs-1.98.1
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Kcnvea
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386
++ dirname /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd avogadrolibs-1.98.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386 'INSTALL=/usr/bin/install -p' -C build
make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.98.1 -B/builddir/build/BUILD/avogadrolibs-1.98.1/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.98.1/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.98.1/build//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/CMakeFiles/pugixml.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'thirdparty/CMakeFiles/pugixml.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[  0%] Built target pugixml
/usr/bin/make  -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/CMakeFiles/struct.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'thirdparty/CMakeFiles/struct.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[  1%] Built target struct
/usr/bin/make  -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.98.1/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'thirdparty/libgwavi/CMakeFiles/gwavi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[  2%] Built target gwavi
/usr/bin/make  -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core/CMakeFiles/Headers.dir/DependInfo.cmake "--color="
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[  2%] Built target Headers
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color="
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/usr/bin/make  -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.98.1/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/core /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/core/CMakeFiles/Core.dir/DependInfo.cmake "--color="
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[  7%] Built target Core
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/calc/CMakeFiles/Calc.dir/DependInfo.cmake "--color="
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[  9%] Built target Calc
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/io /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/io/CMakeFiles/IO.dir/DependInfo.cmake "--color="
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[ 12%] Built target IO
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/quantumio/CMakeFiles/QuantumIO.dir/DependInfo.cmake "--color="
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[ 14%] Built target QuantumIO
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/command /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/command /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color="
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[ 15%] Built target avobabel
/usr/bin/make  -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/command /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color="
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[ 16%] Built target qube
/usr/bin/make  -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/rendering/CMakeFiles/Rendering.dir/DependInfo.cmake "--color="
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[ 27%] Built target Rendering
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/DependInfo.cmake "--color="
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[ 27%] Automatic MOC for target QtGui
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenInfo.json Release
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[ 27%] Built target QtGui_autogen
/usr/bin/make  -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend
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cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color="
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[ 33%] Built target QtGui
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color="
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[ 33%] Automatic MOC for target QtOpenGL
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release
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[ 33%] Built target QtOpenGL_autogen
/usr/bin/make  -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color="
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[ 34%] Built target QtOpenGL
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color="
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[ 34%] Automatic MOC for target MoleQueue
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 34%] Built target MoleQueue_autogen
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target MoleQueue
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target QTAIMScenePlugin
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target QTAIMScenePlugin_autogen
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target QTAIMScenePlugin
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Automatic MOC for target ThreeDMol
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 37%] Built target ThreeDMol_autogen
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 38%] Built target ThreeDMol
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Automatic MOC for target ApplyColors
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Built target ApplyColors_autogen
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 39%] Built target ApplyColors
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Automatic MOC for target AlignTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Built target AlignTool_autogen
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 40%] Built target AlignTool
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Automatic MOC for target BondCentric
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 41%] Built target BondCentric_autogen
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target BondCentric
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Automatic MOC for target Bonding
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Bonding_autogen
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Bonding
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Automatic MOC for target Cartoons
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Cartoons_autogen
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Cartoons
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Automatic MOC for target Centroid
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 42%] Built target Centroid_autogen
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 43%] Built target Centroid
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 43%] Automatic MOC for target CopyPaste
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 43%] Built target CopyPaste_autogen
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Built target CopyPaste
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Automatic MOC for target Crystal
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 44%] Built target Crystal_autogen
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Built target Crystal
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Automatic MOC for target CrystalScene
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 46%] Built target CrystalScene_autogen
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 47%] Built target CrystalScene
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 47%] Automatic MOC for target CustomElements
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 47%] Built target CustomElements_autogen
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Built target CustomElements
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Automatic MOC for target Editor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 48%] Built target Editor_autogen
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Built target Editor
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Automatic MOC for target FetchPDB
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 49%] Built target FetchPDB_autogen
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Built target FetchPDB
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Automatic MOC for target Focus
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 50%] Built target Focus_autogen
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Built target Focus
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Automatic MOC for target Forcefield
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 51%] Built target Forcefield_autogen
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Built target Forcefield
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Automatic MOC for target Hydrogens
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 52%] Built target Hydrogens_autogen
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Built target Hydrogens
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Automatic MOC for target ImportPQR
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 53%] Built target ImportPQR_autogen
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Built target ImportPQR
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Automatic MOC for target NucleicInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 54%] Built target NucleicInput_autogen
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Built target NucleicInput
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Automatic MOC for target Label
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 55%] Built target Label_autogen
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Built target Label
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Automatic MOC for target LabelEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 56%] Built target LabelEditor_autogen
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Built target LabelEditor
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Automatic MOC for target LineFormatInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 57%] Built target LineFormatInput_autogen
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target LineFormatInput
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Automatic MOC for target Manipulator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 58%] Built target Manipulator_autogen
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 59%] Built target Manipulator
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 60%] Automatic MOC for target MeasureTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 60%] Built target MeasureTool_autogen
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Built target MeasureTool
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Automatic MOC for target Navigator
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 61%] Built target Navigator_autogen
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Built target Navigator
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Automatic MOC for target NetworkDatabases
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 62%] Built target NetworkDatabases_autogen
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 63%] Built target NetworkDatabases
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Automatic MOC for target OpenBabel
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 64%] Built target OpenBabel_autogen
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Built target OpenBabel
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Automatic MOC for target PlayerTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 65%] Built target PlayerTool_autogen
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target PlayerTool
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Automatic MOC for target PLY
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target PLY_autogen
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ply/CMakeFiles/PLY.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target PLY
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Automatic MOC for target POVRay
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 66%] Built target POVRay_autogen
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 67%] Built target POVRay
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Automatic MOC for target PropertyTables
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target PropertyTables_autogen
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target PropertyTables
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Automatic MOC for target ResetView
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target ResetView_autogen
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target ResetView
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Automatic MOC for target Select
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 68%] Built target Select_autogen
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Built target Select
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Automatic MOC for target Selection
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 69%] Built target Selection_autogen
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target Selection
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Automatic MOC for target SpaceGroup
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 70%] Built target SpaceGroup_autogen
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Built target SpaceGroup
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Automatic MOC for target Surfaces
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 71%] Built target Surfaces_autogen
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Built target Surfaces
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Automatic MOC for target LammpsInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 73%] Built target LammpsInput_autogen
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 74%] Built target LammpsInput
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 74%] Automatic MOC for target OpenMMInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 74%] Built target OpenMMInput_autogen
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Built target OpenMMInput
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Automatic MOC for target CoordinateEditor
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 75%] Built target CoordinateEditor_autogen
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Built target CoordinateEditor
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Automatic MOC for target InsertFragment
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 76%] Built target InsertFragment_autogen
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Built target InsertFragment
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Automatic MOC for target MolecularProperties
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 77%] Built target MolecularProperties_autogen
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Built target MolecularProperties
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Automatic MOC for target SVG
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 78%] Built target SVG_autogen
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Built target SVG
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Automatic MOC for target Spectra
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 79%] Built target Spectra_autogen
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target Spectra
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Automatic MOC for target TemplateTool
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 80%] Built target TemplateTool_autogen
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target TemplateTool
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Automatic MOC for target VRML
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 81%] Built target VRML_autogen
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Built target VRML
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Automatic MOC for target apbs
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 82%] Built target apbs_autogen
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 83%] Built target apbs
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 83%] Automatic MOC for target Cp2kInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 83%] Built target Cp2kInput_autogen
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 84%] Built target Cp2kInput
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 84%] Automatic MOC for target GamessInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 84%] Built target GamessInput_autogen
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 85%] Built target GamessInput
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 85%] Automatic MOC for target commands
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 85%] Built target commands_autogen
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target commands
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Automatic MOC for target QuantumInput
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target QuantumInput_autogen
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target QuantumInput
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Automatic MOC for target ScriptCharges
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 86%] Built target ScriptCharges_autogen
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 87%] Built target ScriptCharges
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 87%] Automatic MOC for target ScriptFileFormats
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 87%] Built target ScriptFileFormats_autogen
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 88%] Built target ScriptFileFormats
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 89%] Automatic MOC for target PluginDownloader
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 89%] Built target PluginDownloader_autogen
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target PluginDownloader
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Automatic MOC for target BallStick
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target BallStick_autogen
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target BallStick
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Automatic MOC for target CloseContacts
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 90%] Built target CloseContacts_autogen
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 91%] Built target CloseContacts
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Automatic MOC for target Force
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Built target Force_autogen
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Built target Force
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Automatic MOC for target Licorice
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 92%] Built target Licorice_autogen
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target Licorice
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Automatic MOC for target Meshes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target Meshes_autogen
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target Meshes
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Automatic MOC for target NonCovalent
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 93%] Built target NonCovalent_autogen
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Built target NonCovalent
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Automatic MOC for target VanDerWaals
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 94%] Built target VanDerWaals_autogen
/usr/bin/make  -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Built target VanDerWaals
/usr/bin/make  -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 95%] Automatic MOC for target Wireframe
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 97%] Automatic MOC for target OverlayAxes
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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/usr/bin/make  -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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[ 97%] Built target OverlayAxes
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 98%] Automatic MOC for target QTAIMExtension
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 98%] Built target QTAIMExtension_autogen
/usr/bin/make  -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build'.
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[ 99%] Built target QTAIMExtension
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
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make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Automatic MOC for target QtPlugins
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenInfo.json Release
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
[ 99%] Built target QtPlugins_autogen
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
cd /builddir/build/BUILD/avogadrolibs-1.98.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.98.1 /builddir/build/BUILD/avogadrolibs-1.98.1/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.98.1/build/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/make  -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build
make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build'.
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[100%] Built target QtPlugins
make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.98.1/build/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/libgwavi.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/angletools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/angleiterator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/array.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/avogadrocore.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/color3f.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/coordinateset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/matrix.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/types.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/utilities.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/vector.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCore.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCore.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCore.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCore.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/atom.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/atomtyper.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/atomtyper-inline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/atomutilities.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/basisset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/bond.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/coordinateblockgenerator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/crystaltools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/cube.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/dihedraliterator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/elements.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/gaussianset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/gaussiansettools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/graph.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/layer.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/layermanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/mesh.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/molecule.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/mutex.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/nameatomtyper.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/neighborperceiver.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/residue.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/ringperceiver.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/secondarystructure.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/slaterset.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/slatersettools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/spacegroups.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/symbolatomtyper.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/unitcell.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/variant.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/variant-inline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/variantmap.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/version.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/sharedmutex.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/avospglib.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCalc.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCalc.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCalc.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCalc.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/chargemodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/chargemanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/defaultmodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/energycalculator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/energymanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/lennardjones.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/calc/avogadrocalcexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroIO.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroIO.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroIO.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroIO.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/cjsonformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/cmlformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/dcdformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/fileformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/fileformatmanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/gromacsformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/mdlformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/vaspformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/pdbformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/xyzformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/trrformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/turbomoleformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/lammpsformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/hdf5dataformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/mmtfformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/io/avogadroioexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQuantumIO.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQuantumIO.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQuantumIO.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQuantumIO.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/gamessus.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/gaussianfchk.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/gaussiancube.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/genericoutput.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/molden.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/mopacaux.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/nwchemjson.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/nwchemlog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/orca.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/quantumio/avogadroquantumioexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroRendering.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroRendering.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroRendering.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroRendering.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/arcsector.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/arcstrip.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/arrowgeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/avogadrogl.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/avogadrorendering.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/beziergeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/bsplinegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/bufferobject.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/camera.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/cartoongeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/curvegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/cylindergeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/dashedlinegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/drawable.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/geometrynode.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/geometryvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/groupnode.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/glrenderer.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/glrendervisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/linestripgeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/meshgeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/node.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/plyvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/povrayvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/primitive.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/quad.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/quadoutline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/scene.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/shader.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/shaderprogram.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/solidpipeline.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/spheregeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/textlabel2d.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/textlabel3d.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/textlabelbase.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/textproperties.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/textrenderstrategy.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/texture2d.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/transformnode.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/visitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/volumegeometry.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/vrmlvisitor.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtGui.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtGui.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtGui.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtGui.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/backgroundfileformat.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/colorbutton.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/containerwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/customelementdialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/elementtranslator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/extensionplugin.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/filebrowsewidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/fileformatdialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/generichighlighter.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/hydrogentools.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/interfacescript.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/interfacewidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/jsonwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/layermodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/rwlayermanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/meshgenerator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/molecule.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/moleculemodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/multiviewwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/periodictableview.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/persistentatom.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/persistentbond.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/pluginlayermanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/pythonscript.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/rwmolecule.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/sceneplugin.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/scenepluginmodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/scriptloader.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/toolplugin.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/utilities.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/viewfactory.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtgui/avogadroqtguiexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtOpenGL.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtOpenGL.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtOpenGL.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtOpenGL.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtopengl/activeobjects.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtopengl/glwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtopengl/qttextrenderstrategy.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtopengl/avogadroqtopenglexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroMoleQueue.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroMoleQueue.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroMoleQueue.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroMoleQueue.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/batchjob.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/inputgenerator.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/inputgeneratordialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/inputgeneratorwidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/molequeuedialog.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/molequeuemanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/molequeuequeuelistmodel.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/molequeuewidget.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/molequeue/avogadromolequeueexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/ThreeDMol.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/ApplyColors.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/AlignTool.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/BondCentric.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Bonding.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Cartoons.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Centroid.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/CopyPaste.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Crystal.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/CrystalScene.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/CustomElements.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Editor.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/FetchPDB.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Focus.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Forcefield.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/ani2x.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/gaff.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/gfn1.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/gfn2.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/gfnff.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/mmff94.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts/energy/uff.py
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Hydrogens.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/ImportPQR.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/NucleicInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Label.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/LabelEditor.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/LineFormatInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Manipulator.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/MeasureTool.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Navigator.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/NetworkDatabases.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/OpenBabel.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/PlayerTool.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/PLY.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/POVRay.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/PropertyTables.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/ResetView.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Select.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Selection.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/SpaceGroup.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Surfaces.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/LammpsInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/OpenMMInput.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/CoordinateEditor.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/InsertFragment.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/ZSM-5.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/ZSM-5.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/ZON.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/ZON.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/YUG.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/YUG.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/WEN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/WEN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/WEI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/WEI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VSV.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VSV.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VNI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VNI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VFI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VFI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VET.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/VET.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UWY.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UWY.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UTL.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UTL.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/USI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/USI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UOZ.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UOZ.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UOS.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UOS.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UFI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UFI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UEI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/UEI.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TUN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TUN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TSC.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TSC.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TON.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TON.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TOL.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TOL.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/THO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/THO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TER.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/TER.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/SZR.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/SZR.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/SVR.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/SVR.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/STW.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/STW.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/STT.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/STT.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/STO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/zeolites/STO.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/MnO2-Pyrolusite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/MnO-Manganosite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/MnO-Manganosite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/MgO-Periclase.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/MgO-Periclase.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Li2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Li2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/La2O3-LanthanumOxide-A.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/La2O3-LanthanumOxide-A.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/K2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/K2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/IrO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/IrO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/In2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/In2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/In2O3-IndiumOxide.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/In2O3-IndiumOxide.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/HfO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/HfO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/GeO2.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/GeO2.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/GeO2-Argutite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/GeO2-Argutite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/GeO2-Argutite-tetrag.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/GeO2-Argutite-tetrag.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/FeO-Wustite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/FeO-Wustite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Fe3O4-Magnetite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Fe3O4-Magnetite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Fe2O3-Hematite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Fe2O3-Hematite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CuO-Tenorite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CuO-Tenorite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Cu2O-Cuprite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Cu2O-Cuprite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Cr2O3-Eskolaite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Cr2O3-Eskolaite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CoO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CoO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CoFe2O4.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CoFe2O4.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CeO2-Cerianite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CeO2-Cerianite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CdO-Monteponite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CdO-Monteponite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CaO-Lime.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/CaO-Lime.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/BaO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/BaO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/B6O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/B6O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/B2O3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/B2O3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Al2O3-Corundum.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Al2O3-Corundum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/AgO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/AgO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Ag2O.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/Ag2O.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/(MgAl2)O4-Spinel.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/oxides/(MgAl2)O4-Spinel.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/YBa2Cu3O6.9-YBCO.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/YBa2Cu3O6.9-YBCO.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/LiNbO3-LithiumNiobate.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/LiNbO3-LithiumNiobate.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/LaAlO3.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/LaAlO3.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/H3N-Ammonia.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/H3N-Ammonia.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/FeMnO3-Bixbyite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/FeMnO3-Bixbyite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/C10H10Fe-Ferrocene.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/C10H10Fe-Ferrocene.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/TiN-Osbornite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/TiN-Osbornite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/Si3N4-beta.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/Si3N4-beta.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/InN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/InN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/GaN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/GaN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/BN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/BN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/AlN.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/nitrides/AlN.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/PtBi.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/PtBi.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/FePt-Tetraferroplatinum.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/FePt-Tetraferroplatinum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/Cu2MnAl-Heusler.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/Cu2MnAl-Heusler.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/CoFe-Wairauite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/CoFe-Wairauite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/BiPd-Sobolevskite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/BiPd-Sobolevskite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/AuCu-Tetraauricupride.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/AuCu-Tetraauricupride.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/Au3Cu-Bogdanovite.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/Au3Cu-Bogdanovite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice/H2O-Ice.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice/H2O-Ice.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice/H2O-Ice-VII.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice/H2O-Ice-VII.cif
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice/H2O-Ice-VI.png
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/avogadro2/crystals/ice/H2O-Ice-VI.cif
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-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/VanDerWaals.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/Wireframe.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/OverlayAxes.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/QTAIMExtension.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/staticplugins/QTAIMScenePlugin.a
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtPlugins.so.1.98.1
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtPlugins.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtPlugins.so.1.98.1" to "/usr/lib"
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtPlugins.so
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtplugins/pluginmanager.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtplugins/pluginfactory.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtplugins/avogadrostaticqtplugins.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/include/avogadro2/avogadro/qtplugins/avogadroqtpluginsexport.h
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/AvogadroLibs/avogadrolibs/README.md
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/AvogadroLibs/avogadrolibs/CONTRIBUTING.md
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/AvogadroLibs/avogadrolibs/LICENSE
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/cmake/avogadrolibs/AvogadroLibsConfig.cmake
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/cmake/avogadrolibs/AvogadroLibsConfigVersion.cmake
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/cmake/avogadrolibs/FindEigen3.cmake
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/cmake/avogadrolibs/Findlibmsym.cmake
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/cmake/avogadrolibs/AvogadroLibsTargets.cmake
-- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/cmake/avogadrolibs/AvogadroLibsTargets-release.cmake
make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.98.1/build'
+ cp -a /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/
+ /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/charges/xtb.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/ani2x.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gaff.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfn1.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfn2.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfnff.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/mmff94.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/uff.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/charges/xtb.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/ani2x.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gaff.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfn1.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfn2.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfnff.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/mmff94.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/energy/uff.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py: no change
/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py: no change
+ ln -sf /usr/lib/python3.12/site-packages/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/avogadro2/scripts
+ chrpath -d /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCalc.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroCore.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroMoleQueue.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtGui.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtOpenGL.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQtPlugins.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroQuantumIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/libAvogadroRendering.so
+ rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.98.1-1.fc40 --unique-debug-suffix -1.98.1-1.fc40.i386 --unique-debug-src-base avogadro2-libs-1.98.1-1.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadrolibs-1.98.1
find-debuginfo: starting
Extracting debug info from 9 files
DWARF-compressing 9 files
sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.98.1-1.fc40.i386
17363 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/uff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/mmff94.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/gaff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/uff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/mmff94.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/gaff.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/lib/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: avogadro2-libs-1.98.1-1.fc40.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9h93tn
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/avogadrogenerators/README-avogenerators.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.HgpEbr
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/molecules/LICENSE-molecules /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/lib/avogadro2/scripts/scripts -> /usr/lib/python3.12/site-packages/avogadro2/scripts
Provides: avogadro2-libs = 1.98.1-1.fc40 avogadro2-libs(x86-32) = 1.98.1-1.fc40 avogadro2-libs-static = 0:1.98.1-1.fc40 libAvogadroCalc.so.1 libAvogadroCore.so.1 libAvogadroIO.so.1 libAvogadroMoleQueue.so.1 libAvogadroQtGui.so.1 libAvogadroQtOpenGL.so.1 libAvogadroQtPlugins.so.1 libAvogadroQuantumIO.so.1 libAvogadroRendering.so.1 python-avogadro2-libs = 1.98.1-1.fc40 python3.12-avogadro2-libs = 1.98.1-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux.so.2 ld-linux.so.2(GLIBC_2.3) libAvogadroCalc.so.1 libAvogadroCore.so.1 libAvogadroIO.so.1 libAvogadroMoleQueue.so.1 libAvogadroQtGui.so.1 libAvogadroQtOpenGL.so.1 libAvogadroQuantumIO.so.1 libAvogadroRendering.so.1 libGLEW.so.2.2 libGLX.so.0 libOpenGL.so.0 libQt5Concurrent.so.5 libQt5Concurrent.so.5(Qt_5) libQt5Core.so.5 libQt5Core.so.5(Qt_5) libQt5Core.so.5(Qt_5.15) libQt5Gui.so.5 libQt5Gui.so.5(Qt_5) libQt5Network.so.5 libQt5Network.so.5(Qt_5) libQt5Svg.so.5 libQt5Svg.so.5(Qt_5) libQt5Widgets.so.5 libQt5Widgets.so.5(Qt_5) libarchive.so.13 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgcc_s.so.1(GCC_3.4) libgcc_s.so.1(GCC_4.0.0) libgcc_s.so.1(GLIBC_2.0) libhdf5.so.200 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) libsymspg.so.1 python(abi) = 3.12 rtld(GNU_HASH)
Obsoletes: python-avogadro2-libs < 1.98.1-1.fc40
Processing files: avogadro2-libs-devel-1.98.1-1.fc40.i686
Provides: avogadro2-libs-devel = 1.98.1-1.fc40 avogadro2-libs-devel(x86-32) = 1.98.1-1.fc40 cmake(AvogadroLibs) = 1.98.1 cmake(avogadrolibs) = 1.98.1 libgwavi-static
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: cmake-filesystem(x86-32) libAvogadroCalc.so.1 libAvogadroCore.so.1 libAvogadroIO.so.1 libAvogadroMoleQueue.so.1 libAvogadroQtGui.so.1 libAvogadroQtOpenGL.so.1 libAvogadroQtPlugins.so.1 libAvogadroQuantumIO.so.1 libAvogadroRendering.so.1
Processing files: avogadro2-libs-doc-1.98.1-1.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dcrqIk
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs-doc
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs-doc
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/build/docs/html /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/doc/avogadro2-libs-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.qtzb5e
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs-doc
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs-doc
+ cp -pr /builddir/build/BUILD/avogadrolibs-1.98.1/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386/usr/share/licenses/avogadro2-libs-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: avogadro2-libs-doc = 1.98.1-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: avogadro2-libs-debugsource-1.98.1-1.fc40.i686
Provides: avogadro2-libs-debugsource = 1.98.1-1.fc40 avogadro2-libs-debugsource(x86-32) = 1.98.1-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: avogadro2-libs-debuginfo-1.98.1-1.fc40.i686
Provides: avogadro2-libs-debuginfo = 1.98.1-1.fc40 avogadro2-libs-debuginfo(x86-32) = 1.98.1-1.fc40 debuginfo(build-id) = 081b8b70b4fda27ec829ffb10e6e086eba418a51 debuginfo(build-id) = 17f4dd9533efba03ff5febbbeefa5d2ae1d1288c debuginfo(build-id) = 33bc8968a2ac4e1c5542e0476f37fbc6b6c650cc debuginfo(build-id) = 4f9f96cc622097e097328b5be0d39c9fd8dec582 debuginfo(build-id) = 98d38b70a874e9fb9ef577e016ec4589812c6bf0 debuginfo(build-id) = a60c8e8dbb235388aa9f1c045524b625f0e3f87c debuginfo(build-id) = a643da4806e65cad6725026d85ab7835c5f6c837 debuginfo(build-id) = e8147be05203f09aca7f5d4e6b64e6ffc48febe2 debuginfo(build-id) = fe65c6fd5067e346f54e0872e6572c11d5a232e1 libAvogadroCalc.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroCore.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroIO.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroMoleQueue.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroQtGui.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroQtOpenGL.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroQtPlugins.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroQuantumIO.so.1.98.1-1.98.1-1.fc40.i386.debug libAvogadroRendering.so.1.98.1-1.98.1-1.fc40.i386.debug
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: avogadro2-libs-debugsource(x86-32) = 1.98.1-1.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386
Wrote: /builddir/build/RPMS/avogadro2-libs-1.98.1-1.fc40.i686.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.98.1-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.98.1-1.fc40.i686.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.98.1-1.fc40.i686.rpm
Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.98.1-1.fc40.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.kb7xY8
+ umask 022
+ cd /builddir/build/BUILD
+ cd avogadrolibs-1.98.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.98.1-1.fc40.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.acdXqV
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/avogadrolibs-1.98.1-SPECPARTS
+ rm -rf avogadrolibs-1.98.1 avogadrolibs-1.98.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    absolute symlink: /usr/lib/avogadro2/scripts/scripts -> /usr/lib/python3.12/site-packages/avogadro2/scripts
Finish: rpmbuild avogadro2-libs-1.98.1-1.fc40.src.rpm
Finish: build phase for avogadro2-libs-1.98.1-1.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1702407566.442991/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1702407566.442991/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1702407566.442991/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.98.1-1.fc40.src.rpm) Config(child) 16 minutes 9 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "avogadro2-libs",
            "epoch": null,
            "version": "1.98.1",
            "release": "1.fc40",
            "arch": "i686"
        },
        {
            "name": "avogadro2-libs",
            "epoch": null,
            "version": "1.98.1",
            "release": "1.fc40",
            "arch": "src"
        },
        {
            "name": "avogadro2-libs-debuginfo",
            "epoch": null,
            "version": "1.98.1",
            "release": "1.fc40",
            "arch": "i686"
        },
        {
            "name": "avogadro2-libs-devel",
            "epoch": null,
            "version": "1.98.1",
            "release": "1.fc40",
            "arch": "i686"
        },
        {
            "name": "avogadro2-libs-doc",
            "epoch": null,
            "version": "1.98.1",
            "release": "1.fc40",
            "arch": "noarch"
        },
        {
            "name": "avogadro2-libs-debugsource",
            "epoch": null,
            "version": "1.98.1",
            "release": "1.fc40",
            "arch": "i686"
        }
    ]
}
RPMResults finished